The eukaryotic pathogen genomes underwent a multi-step cleaning process to remove both contaminating and non-informative sequences (see Fig 1). Each genome was ...

25 июн. 2018 г. · We have developed a bioinformatics system for eliminating contamination as well as low-complexity genomic sequences in the draft genomes of eukaryotic ...

6 февр. 2018 г. · We tested our method for eliminating contamination on the draft genomes contained in EuPathDB release 28 [23], which contains 245 genomes ...

17 авг. 2024 г. · We applied this software to identify and remove human, bacterial, archaeal, and viral sequences present in a comprehensive database of all ...

1 февр. 2024 г. · We present a tool called ContScout which was developed to identify and remove contamination from annotated draft genomes.

The pseudo-reads are then classified using Kraken first against the common contaminating vector sequences and the plant, viral, bacterial, archaeal, human, and ...

To address this problem, we have developed a bioinformatics system for eliminating contamination as well as low-complexity genomic sequences in the draft ...

Removing contaminants from databases of draft genomes. Overview of attention for article published in PLoS Computational Biology, June 2018. Altmetric Badge ...

8 февр. 2018 г. · To address this problem, we have developed a bioinformatics system for eliminating contamination as well as low-complexity genomic sequences in ...

31 янв. 2024 г. · ContScout is a genome-wide method that relies on a reference database and genome annotation data to identify and remove contaminating proteins.