- Posthumously awarded the Presidential Medal of Freedom by President Barack Obama 24 November 2014.
- In 2008, his hometown of Pelham, New York, renamed a section of Harmon Avenue to "Michael Schwerner Way" in his honor.
- Robert Reich, the American political commentator, professor, and author who served in the administrations of Presidents Gerald Ford, Jimmy Carter, and Bill Clinton, says that as a child, he was bullied and sought out the protection from older boys; one of whom was Michael Schwerner. Reich cites this event as an inspiration for his life's work-to "fight the bullies, to protect the powerless, to make sure that the people without a voice have a voice.".
- His murder, along with James Chaney and Andrew Goodman, by the Ku Klux Klan is depicted in the 1965 Norman Rockwell painting entitled, "Murder in Mississippi", which is held in the permanent collection of the Norman Rockwell Museum.
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