Kanata, an aspiring Drifter, explores the museum ruins with renowned Drifter Tokio, and discovers a Magus with no memories. Then the Enders attack, and Rock Town is in danger.
Kanata returns to the museum ruins where Noir was found searching for clues regarding her past. Range, an executive in Baccarat Nest's criminal syndicate, tries to lure Noir away from Rock Town.
To become a stronger Drifter, Kanata must strengthen his bond with his Magus; Kanata makes his way to the Fes maze with Noir; a group attacking Amasian Type Zero Magus and their Drifters comes to Tokio's attention.
Drifters from nearby Nests rush to Rock Town's aid as they prepare to face off against the Silver Storm. Meanwhile, the mysterious group who are after Noir take advantage of the chaos and order Ciel to eliminate Kanata.
It is the final leg in the battle against the Silver Storm. No one is left unscathed and though Kanata refuses to give up, even the upgraded DAISYOGRE is desperately struggling.
A few days have passed since the heated battle against Silver Storm, but Noir still has not returned to her normal self after transforming into Mystere.
Mystere tells Kanata that Histoire really does exist. As proof, she and her former master had once made contact with Histoire's network during their travels.
Kanata heads to nearby Carthago, which supposedly has an old spaceport, in his search for clues to the legendary Histoire. He tries to gain access, but is suddenly attacked.
Noir learns her personality may disappear once Mystere's self-repair sequence is completed. She accepts her fate, believing Kanata is better served with Mystere at his side.
Noir's reckless behavior causes both her and Mystere to stop functioning. When neither will wake up, Kanata turns to Alba for help. However, Alba tells Kanata he will need another Type Zero Magus in order to save them.
Betrayed by a trusted ally, Kanata is taken prisoner. To make matters worse, two more of his friends are seen standing among Ideal's members. With a final twist of the proverbial knife, Weisheit reveals a shocking past.
Ellie comes looking for Kanata, fearing for his safety. She finds him in a state of shock, cradling a motionless Ciel and blaming himself. Time is running out for Noir and Mystere, but he still cannot make a choice.
Pascale left a message detailing Noir and Mystere's past. It was a story that began when they first made contact with Histoire. Meanwhile, Macht reminisces about the time he entered into his contract with Schnee.
With the battle against Ideal on the horizon, Kanata is busy enhancing DAISYOGRE ALTER. Meanwhile, Noir still cannot accept that Ciel was the one who saved her. Wandering around, she comes across one of Ciel's fans.
With Maria's rocket completed, Kanata can finally travel to Histoire. However, Ideal has other ideas and tries to stop him. It is open warfare as Weisheit orders Macht to steal Mystere from under Kanata's nose.
Kanata decides to chase Weisheit down in the last remaining rocket to get Mystere back. He and Noir say their goodbyes to the people of Rock Town before finally arriving at Histoire, where Weisheit is eagerly waiting for them.
Everything went just as Weisheit planned and every Magus has ceased functioning. However, Noir is the only Magus unaffected due to her unique origins. Now all hope rests on her shoulders.
