Cell Structure and Function
Online ISSN : 1347-3700
Print ISSN : 0386-7196
ISSN-L : 0386-7196
Deep learning-based segmentation of subcellular organelles in high-resolution phase-contrast images
Kentaro ShimasakiYuko Okemoto-NakamuraKyoko SaitoMasayoshi FukasawaKaoru KatohKentaro Hanada
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2024 Volume 49 Issue 2 Pages 57-65

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Abstract

Although quantitative analysis of biological images demands precise extraction of specific organelles or cells, it remains challenging in broad-field grayscale images, where traditional thresholding methods have been hampered due to complex image features. Nevertheless, rapidly growing artificial intelligence technology is overcoming obstacles. We previously reported the fine-tuned apodized phase-contrast microscopy system to capture high-resolution, label-free images of organelle dynamics in unstained living cells (Shimasaki, K. et al. (2024). Cell Struct. Funct., 49: 21–29). We here showed machine learning-based segmentation models for subcellular targeted objects in phase-contrast images using fluorescent markers as origins of ground truth masks. This method enables accurate segmentation of organelles in high-resolution phase-contrast images, providing a practical framework for studying cellular dynamics in unstained living cells.

Key words: label-free imaging, organelle dynamics, apodized phase contrast, deep learning-based segmentation

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