Evolution
Evolution
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Contents
Articles
Overview                                          1
    Introduction to evolution                     1
    Evolution                                    16
    Evolution as theory and fact                 47
    Evolutionary history of life                 53
    Timeline of evolution                        83
History                                          92
    History of evolutionary thought              92
    Lamarckism                                  114
    Saltationism                                121
    Orthogenesis                                122
    On the Origin of Species                    126
    Darwinism                                   154
    The Genetical Theory of Natural Selection   158
    Neo-Darwinism                               160
    Modern evolutionary synthesis               162
Mechanisms                                      212
    Adaptation                                  212
    Genetic drift                               223
    Gene flow                                   233
    Mutation                                    236
    Natural selection                           246
    Speciation                                  260
Phylogenetics                                   268
    Phylogenetics                               268
    Cladistics                                 274
    Cladogram                                  284
    Molecular phylogenetics                    287
Fields                                         290
    Evolutionary developmental biology         290
    Molecular evolution                        296
    Human evolution                            299
    Evolutionary psychology                    316
References
    Article Sources and Contributors           444
    Image Sources, Licenses and Contributors   454
Article Licenses
    License                                    458
                                                                                                                                                     1
Overview
Introduction to evolution
If the differences are helpful, the offspring is more likely to survive and reproduce.
This means that more offspring in the next generation will have the helpful difference.
Over time, populations branch off to become new species as they become geographically separated and genetically isolated.
This process is responsible for the many diverse life forms in the world today.
Evolution is the process of change in all forms of life over generations, and evolutionary biology is the study of how
evolution occurs.
The biodiversity of life evolves by means of natural selection, mutations and genetic drift. The process of natural
selection is based on three conditions. First, every individual is supplied with hereditary material in the form of
genes that are received from their parents; then, passed on to their offspring. Second, organisms tend to produce
more offspring than the environment can support. Third, there are variations among offspring as a consequence of
either the random introduction of new genes via mutations or reshuffling of existing genes during sexual
reproduction.[1] [2] [3]
Natural selection will occur when these facts of nature (heredity, overproduction of offspring, and variation) hold
true. Natural selection means individuals do not have equal chances of reproductive success. As a consequence,
some individuals produce more offspring and thus have a higher degree of fitness. Traits that ensure organisms are
Introduction to evolution                                                                                                      2
     better adapted to their living conditions become more common in descendant populations.[2] [3] For this reason,
     populations will never remain exactly the same over successive generations. The forces of evolution are most evident
     when populations become isolated, either through geographic distance or by mechanisms that prevent genetic
     exchange. Over time, isolated populations can branch off into new species.[4] [5]
     Random genetic drift describes another natural process that regulates the evolution of minor mutations in the genes,
     leading to changes in allele frequencies over time. These smaller mutations occur with regular frequency in and
     among populations. The vast majority of genetic mutations neither assist, change the appearance of, nor bring harm
     to individuals. These mutated genes are neutrally sorted among populations and survive across generations by
     chance alone. When species migrate they carry different genetic varieties to different places. When organisms mate
     they exchange genetic material and new individuals are born.
     The outward expression of each unique genetic mixture in different environments, the phenotype, comprises a
     diversity of traits that can be measured and observed as individuals grow and develop. In contrast to genetic drift,
     natural selection is not a random process because it acts on traits that become adaptive for their functional utilities
     that are necessary for survival.[6] Natural selection and random genetic drift are forever constant and dynamic parts
     of life. More than 99.9% of all species have become extinct since life began over 3.5 billion years ago. Evolution is
     more death than survival and over time this has shaped the branching structure in the tree of life.[7]
     The modern understanding of evolution began with the 1859 publication of Charles Darwin's On the Origin of
     Species. In addition, Gregor Mendel's work with plants helped to explain the hereditary patterns of genetics.[8] Fossil
     discoveries in paleontology, advances in population genetics and a global network of scientific research have
     provided further details into the mechanisms of evolution. Scientists now have a good understanding of the origin of
     new species (speciation) and have observed the speciation process in the laboratory and in the wild. Evolution is the
     principal theory that biologists use to understand life and is used in many disciplines, including medicine,
     psychology, conservation biology, anthropology, forensics, agriculture and other social-cultural applications.
     Darwin noted that orchids exhibited a variety of complex adaptations to ensure pollination; all derived from basic
     floral parts.
     Darwin deduced that since organisms produce more offspring than their environment could possibly support, there
     must be a competitive struggle for survival—only a few individuals can survive out of each generation. Darwin
     realized that it was not chance alone that determined survival. Instead, survival depends on the traits of each
     individual and if these traits aid or hinder survival and reproduction. Well-adapted, or "fit", individuals are likely to
     leave more offspring than their less well-adapted competitors. Darwin realized that the unequal ability of individuals
     to survive and reproduce could cause gradual changes in the population. Traits that help an organism survive and
     reproduce would accumulate over generations. On the other hand, traits that hinder survival and reproduction would
     disappear. Darwin used the term natural selection to describe this process.[13]
     Natural selection is commonly equated with survival of the fittest, but this expression originated in Herbert Spencer's
     Principles of Biology in 1864, after Charles Darwin published his original works. Survival of the fittest describes the
     process of natural selection incorrectly, because natural selection is not only about survival and it is not always the
     fittest that survives.[14]
     Observations of variations in animals and plants formed the basis of the theory of natural selection. For example,
     Darwin observed that orchids and insects have a close relationship that allows the pollination of the plants. He noted
     that orchids have a variety of structures that attract insects, so that pollen from the flowers gets stuck to the insects’
     bodies. In this way, insects transport the pollen from a male to a female orchid. In spite of the elaborate appearance
     of orchids, these specialized parts are made from the same basic structures that make up other flowers. In
     Fertilisation of Orchids Darwin proposed that the orchid flowers did not represent the work of an ideal engineer, but
     were adapted from pre-existing parts, through natural selection.[15]
     Darwin was still researching and experimenting with his ideas on natural selection when he received a letter from
     Alfred Wallace describing a theory very similar to his own. This led to an immediate joint publication of both
     theories. Both Wallace and Darwin saw the history of life like a family tree, with each fork in the tree’s limbs being a
     common ancestor. The tips of the limbs represented modern species and the branches represented the common
     ancestors that are shared amongst many different species. To explain these relationships, Darwin said that all living
     things were related, and this meant that all life must be descended from a few forms, or even from a single common
Introduction to evolution                                                                                                        4
     Source of variation
     Darwin’s theory of natural selection laid the groundwork for modern evolutionary theory, and his experiments and
     observations showed that the organisms in populations varied from each other, that some of these variations were
     inherited, and that these differences could be acted on by natural selection. However, he could not explain the source
     of these variations. Like many of his predecessors, Darwin mistakenly thought that heritable traits were a product of
     use and disuse, and that features acquired during an organism's lifetime could be passed on to its offspring. He
     looked for examples, such as large ground feeding birds getting stronger legs through exercise, and weaker wings
     from not flying until, like the ostrich, they could not fly at all.[18] This misunderstanding was called the inheritance
     of acquired characters and was part of the theory of transmutation of species put forward in 1809 by Jean-Baptiste
     Lamarck. In the late 19th century this theory became known as Lamarckism. Darwin produced an unsuccessful
     theory he called pangenesis to try to explain how acquired characteristics could be inherited. In the 1880s August
     Weismann's experiments indicated that changes from use and disuse could not be inherited, and Lamarckism
     gradually fell from favor.[19]
     The missing information needed to help explain how new features could pass from a parent to its offspring was
     provided by the pioneering genetics work of Gregor Mendel. Mendel’s experiments with several generations of pea
     plants demonstrated that inheritance works by separating and reshuffling hereditary information during the formation
     of sex cells and recombining that information during fertilization. This is like mixing different hands of cards, with
     an organism getting a random mix of half of the cards from one parent, and half of the cards from the other. Mendel
     called the information factors; however, they later became known as genes. Genes are the basic units of heredity in
     living organisms. They contain the information that directs the physical development and behavior of organisms.
     Genes are made of DNA, a long molecule that carries information. This information is encoded in the sequence of
     nucleotides in the DNA, just as the sequence of the letters in words carries information on a page. The genes are like
     short instructions built up of the "letters" of the DNA alphabet. Put together, the entire set of these genes gives
     enough information to serve as an "instruction manual" of how to build and run an organism. The instructions
     spelled out by this DNA alphabet can be changed, however, by mutations, and this may alter the instructions carried
     within the genes. Within the cell, the genes are carried in chromosomes, which are packages for carrying the DNA,
     with the genes arranged along them like beads on a string. It is the reshuffling of the chromosomes that results in
     unique combinations of genes in offspring.
     Although such mutations in DNA are random, natural selection is not a process of chance: the environment
     determines the probability of reproductive success. The end products of natural selection are organisms that are
     adapted to their present environments. Natural selection does not involve progress towards an ultimate goal.
     Evolution does not necessarily strive for more advanced, more intelligent, or more sophisticated life forms.[20] For
     example, fleas (wingless parasites) are descended from a winged, ancestral scorpionfly, and snakes are lizards that
     no longer require limbs - although pythons still grow tiny structures that are the remains of their ancestor's hind
     legs.[21] [22] Organisms are merely the outcome of variations that succeed or fail, dependent upon the environmental
     conditions at the time.
     Rapid environmental changes typically cause extinctions.[23] Of all species that have existed on Earth, 99.9 percent
     are now extinct.[24] Since life began on Earth, five major mass extinctions have led to large and sudden drops in the
     variety of species. The most recent, the Cretaceous–Tertiary extinction event, occurred 65 million years ago, and has
Introduction to evolution                                                                                                                   5
attracted more attention than all others because it killed the dinosaurs.[25]
     Modern synthesis
     The modern evolutionary synthesis was the outcome of a merger of several different scientific fields into a cohesive
     understanding of evolutionary theory. In the 1930s and 1940s, efforts were made to merge Darwin's theory of natural
     selection, research in heredity, and understandings of the fossil records into a unified explanatory model.[26] The
     application of the principles of genetics to naturally occurring populations, by scientists such as Theodosius
     Dobzhansky and Ernst Mayr, advanced understanding of the processes of evolution. Dobzhansky's 1937 work
     Genetics and the Origin of Species was an important step in bridging the gap between genetics and field biology.
     Mayr, on the basis of an understanding of genes and direct observations of evolutionary processes from field
     research, introduced the biological species concept, which defined a species as a group of interbreeding or
     potentially interbreeding populations that are reproductively isolated from all other populations. The paleontologist
     George Gaylord Simpson helped to incorporate fossil research, which showed a pattern consistent with the branching
     and non-directional pathway of evolution of organisms predicted by the modern synthesis.
     The modern synthesis emphasizes the importance of populations as the unit of evolution, the central role of natural
     selection as the most important mechanism of evolution, and the idea of gradualism to explain how large changes
     evolve as an accumulation of small changes over long periods of time.
     Fossil record
     Research in the field of paleontology, the study of fossils, supports
     the idea that all living organisms are related. Fossils provide
     evidence that accumulated changes in organisms over long periods
     of time have led to the diverse forms of life we see today. A fossil
     itself reveals the organism's structure and the relationships
     between present and extinct species, allowing paleontologists to
     construct a family tree for all of the life forms on Earth.[27]
     and Charles Lyell who proposed that the Earth’s geological changes were gradual and consistent.[29] However,
     current evidence in the fossil record supports the concept of mass extinctions. As a result, the general idea of
     catastrophism has re-emerged as a valid hypothesis for at least some of the rapid changes in life forms that appear in
     the fossil records.
     A very large number of fossils have now been discovered and identified. These fossils serve as a chronological
     record of evolution. The fossil record provides examples of transitional species that demonstrate ancestral links
     between past and present life forms.[30] One such transitional fossil is Archaeopteryx, an ancient organism that had
     the distinct characteristics of a reptile (such as a long, bony tail and conical teeth) yet also had characteristics of birds
     (such as feathers and a wishbone). The implication from such a find is that modern reptiles and birds arose from a
     common ancestor.[31]
     Comparative anatomy
     The comparison of similarities between organisms of their form or appearance of parts, called their morphology, has
     long been a way to classify life into closely related groups. This can be done by comparing the structure of adult
     organisms in different species or by comparing the patterns of how cells grow, divide and even migrate during an
     organism's development.
     Taxonomy
     Taxonomy is the branch of biology that names and classifies all living things. Scientists use morphological and
     genetic similarities to assist them in categorizing life forms based on ancestral relationships. For example,
     orangutans, gorillas, chimpanzees, and humans all belong to the same taxonomic grouping referred to as a family –
     in this case the family called Hominidae. These animals are grouped together because of similarities in morphology
     that come from common ancestry (called homology).[32]
     Strong evidence for evolution comes from the analysis of homologous structures: structures in different species that
     no longer perform the same task but which share a similar structure.[33] Such is the case of the forelimbs of
     mammals. The forelimbs of a human, cat, whale, and bat all have strikingly similar bone structures. However, each
     of these four species' forelimbs performs a different task. The same bones that construct a bat's wings, which are
     used for flight, also construct a whale's flippers, which are used for swimming. Such a "design" makes little sense if
     they are unrelated and uniquely constructed for their particular tasks. The theory of evolution explains these
     homologous structures: all four animals shared a common ancestor, and each has undergone change over many
     generations. These changes in structure have produced forelimbs adapted for different tasks.[34]
     Embryology
     In some cases, anatomical comparison of structures in the embryos of two or more species provides evidence for a
     shared ancestor that may not be obvious in the adult forms. As the embryo develops, these homologies can be lost to
     view, and the structures can take on different functions. Part of the basis of classifying the vertebrate group (which
     includes humans), is the presence of a tail (extending beyond the anus) and pharyngeal slits. Both structures appear
     during some stage of embryonic development but are not always obvious in the adult form.[35]
     Because of the morphological similarities present in embryos of different species during development, it was once
     assumed that organisms re-enact their evolutionary history as an embryo. It was thought that human embryos passed
     through an amphibian then a reptilian stage before completing their development as mammals. Such a re-enactment,
     (often called Recapitulation theory), is not supported by scientific evidence. What does occur, however, is that the
     first stages of development are similar in broad groups of organisms.[36] At very early stages, for instance, all
     vertebrates appear extremely similar, but do not exactly resemble any ancestral species. As development continues,
     specific features emerge from this basic pattern.
Introduction to evolution                                                                                                          7
     Vestigial structures
     Homology includes a unique group of shared structures referred to as vestigial structures. Vestigial refers to
     anatomical parts that are of minimal, if any, value to the organism that possesses them. These apparently illogical
     structures are remnants of organs that played an important role in ancestral forms. Such is the case in whales, which
     have small vestigial bones that appear to be remnants of the leg bones of their ancestors which walked on land.[37]
     Humans also have vestigial structures, including the ear muscles, the wisdom teeth, the appendix, the tail bone, body
     hair (including goose bumps), and the semilunar fold in the corner of the eye.[38]
Convergent evolution
     Molecular biology
     Every living organism (with the possible exception of RNA viruses) contains
     molecules of DNA, which carries genetic information. Genes are the pieces of
     DNA that carry this information, and they influence the properties of an
     organism. Genes determine an individual's general appearance and to some
     extent their behavior. If two organisms are closely related, their DNA will be
     very similar.[40] On the other hand, the more distantly related two organisms
     are, the more differences they will have. For example, brothers are closely
     related and have very similar DNA, while cousins share a more distant
     relationship and have far more differences in their DNA. Similarities in DNA
     are used to determine the relationships between species in much the same
     manner as they are used to show relationships between individuals. For
     example, comparing chimpanzees with gorillas and humans shows that there is
     as much as a 96 percent similarity between the DNA of humans and chimps.
     Comparisons of DNA indicate that humans and chimpanzees are more closely
     related to each other than either species is to gorillas.[41] [42]
     Co-evolution
     Co-evolution is a process in which two or more species influence the evolution of each other. All organisms are
     influenced by life around them; however, in co-evolution there is evidence that genetically determined traits in each
     species directly resulted from the interaction between the two organisms.[40]
     An extensively documented case of co-evolution is the relationship between Pseudomyrmex, a type of ant, and the
     acacia, a plant that the ant uses for food and shelter. The relationship between the two is so intimate that it has led to
     the evolution of special structures and behaviors in both organisms. The ant defends the acacia against herbivores
     and clears the forest floor of the seeds from competing plants. In response, the plant has evolved swollen thorns that
     the ants use as shelter and special flower parts that the ants eat.[44] Such co-evolution does not imply that the ants
     and the tree choose to behave in an altruistic manner. Rather, across a population small genetic changes in both ant
     and tree benefited each. The benefit gave a slightly higher chance of the characteristic being passed on to the next
     generation. Over time, successive mutations created the relationship we observe today.
Introduction to evolution                                                                                                                   9
     Artificial selection
                                                                 Artificial selection is the controlled breeding of domestic plants
                                                                 and animals. Humans determine which animal or plant will
                                                                 reproduce and which of the offspring will survive; thus, they
                                                                 determine which genes will be passed on to future generations.
                                                                 The process of artificial selection has had a significant impact on
                                                                 the evolution of domestic animals. For example, people have
                                                                 produced different types of dogs by controlled breeding. The
                                                                 differences in size between the Chihuahua and the Great Dane are
                                                                 the result of artificial selection. Despite their dramatically different
                                                                 physical appearance, they and all other dogs evolved from a few
                                                                 wolves domesticated by humans in what is now China less than
      The results of artificial selection: a Chihuahua mix and
                                                                 15,000 years ago.[45]
                            a Great Dane.
     Species
                                                                 Given the right circumstances, and enough time, evolution leads to
                                                                 the emergence of new species. Scientists have struggled to find a
                                                                 precise and all-inclusive definition of species. Ernst Mayr
                                                                 (1904–2005) defined a species as a population or group of
                                                                 populations whose members have the potential to interbreed
                                                                 naturally with one another to produce viable, fertile offspring.
                                                                 (The members of a species cannot produce viable, fertile offspring
           There are numerous species of cichlids that           with members of other species).[50] Mayr's definition has gained
         demonstrate dramatic variations in morphology.          wide acceptance among biologists, but does not apply to
                                                                 organisms such as bacteria, which reproduce asexually.
     Speciation is the lineage-splitting event that results in two separate species forming from a single common ancestral
     population.[13] A widely accepted method of speciation is called allopatric speciation. Allopatric speciation begins
     when a population becomes geographically separated.[33] Geological processes, such as the emergence of mountain
     ranges, the formation of canyons, or the flooding of land bridges by changes in sea level may result in separate
     populations. For speciation to occur, separation must be substantial, so that genetic exchange between the two
Introduction to evolution                                                                                                         10
     populations is completely disrupted. In their separate environments, the genetically isolated groups follow their own
     unique evolutionary pathways. Each group will accumulate different mutations as well as be subjected to different
     selective pressures. The accumulated genetic changes may result in separated populations that can no longer
     interbreed if they are reunited.[13] Barriers that prevent interbreeding are either prezygotic (prevent mating or
     fertilization) or postzygotic (barriers that occur after fertilization). If interbreeding is no longer possible, then they
     will be considered different species.[51]
     Usually the process of speciation is slow, occurring over very long time spans; thus direct observations within
     human life-spans are rare. However speciation has been observed in present day organisms, and past speciation
     events are recorded in fossils.[52] [53] [54] Scientists have documented the formation of five new species of cichlid
     fishes from a single common ancestor that was isolated fewer than 5000 years ago from the parent stock in Lake
     Nagubago.[55] The evidence for speciation in this case was morphology (physical appearance) and lack of natural
     interbreeding. These fish have complex mating rituals and a variety of colorations; the slight modifications
     introduced in the new species have changed the mate selection process and the five forms that arose could not be
     convinced to interbreed.[56]
James Hutton
Richard Dawkins
     The theory of evolution is widely accepted among the scientific community, serving to link the diverse specialty
     areas of biology.[17] Evolution provides the field of biology with a solid scientific base. The significance of
     evolutionary theory is best described by the title of a paper by Theodosius Dobzhansky (1900–1975), published in
     American Biology Teacher; "Nothing in Biology Makes Sense Except in the Light of Evolution".[57] Nevertheless,
     the theory of evolution is not static. There is much discussion within the scientific community concerning the
     mechanisms behind the evolutionary process. For example, the rate at which evolution occurs is still under
     discussion. In addition, there are conflicting opinions as to which is the primary unit of evolutionary change – the
Introduction to evolution                                                                                                                                  11
     Rate of change
     Two views exist concerning the rate of evolutionary change. Darwin and his contemporaries viewed evolution as a
     slow and gradual process. Evolutionary trees are based on the idea that profound differences in species are the result
     of many small changes that accumulate over long periods.
     The view that evolution is gradual had its basis in the works of the geologist James Hutton (1726–1797) and his
     theory called "gradualism". Hutton's theory suggests that profound geological change was the cumulative product of
     a relatively slow continuing operation of processes which can still be seen in operation today, as opposed to
     catastrophism which promoted the idea that sudden changes had causes which can no longer be seen at work. A
     uniformitarian perspective was adopted for biological changes. Such a view can seem to contradict the fossil record,
     which shows evidence of new species appearing suddenly, then persisting in that form for long periods. The
     paleontologist Stephen Jay Gould (1941–2002) developed a model that suggests that evolution, although a slow
     process in human terms, undergoes periods of relatively rapid change over only a few thousand or million years,
     alternating with long periods of relative stability, a model called "punctuated equilibrium" which explains the fossil
     record without contradicting Darwin's ideas.[58]
     Unit of change
     A common unit of selection in evolution is the organism. Natural selection occurs when the reproductive success of
     an individual is improved or reduced by an inherited characteristic, and reproductive success is measured by the
     number of an individual's surviving offspring. The organism view has been challenged by a variety of biologists as
     well as philosophers. Richard Dawkins (born 1941) proposes that much insight can be gained if we look at evolution
     from the gene's point of view; that is, that natural selection operates as an evolutionary mechanism on genes as well
     as organisms.[59] In his 1976 book The Selfish Gene, he explains:
    “ Individuals are not stable things, they are fleeting. Chromosomes too are shuffled to oblivion, like hands of cards soon after they are dealt. But
      the cards themselves survive the shuffling. The cards are the genes. The genes are not destroyed by crossing-over; they merely change partners
      and march on. Of course they march on. That is their business. They are the replicators and we are their survival machines. When we have
      served our purpose we are cast aside. But genes are denizens of geological time: genes are forever.
                                                                                                           [60]
                                                                                                                                                     ”
     Others view selection working on many levels, not just at a single level of organism or gene; for example, Stephen
     Jay Gould called for a hierarchical perspective on selection.[61]
     Summary
     Several basic observations establish the theory of evolution, which explains the variety and relationship of all living
     things. There are genetic variations within a population of individuals. Some individuals, by chance, have features
     that allow them to survive and thrive better than their kind. The individuals that survive will be more likely to have
     offspring of their own. The offspring might inherit the useful feature.
     Evolution is not a random process. While mutations are random, natural selection is not. Evolution is an inevitable
     result of imperfectly copying, self-replicating organisms reproducing over billions of years under the selective
     pressure of the environment. The outcome of evolution is not a perfectly designed organism. The outcome is simply
     an individual that can survive better and reproduce more successfully than its neighbors in a particular environment.
     Fossils, the genetic code, and the peculiar distribution of life on Earth provide a record of evolution and demonstrate
     the common ancestry of all organisms, both living and long dead. Evolution can be directly observed in artificial
     selection, the selective breeding for certain traits of domestic animals and plants. The diverse breeds of cats, dogs,
     horses, and agricultural plants serve as examples of evolution.
Introduction to evolution                                                                                                                               12
     Although some groups raise objections to the theory of evolution, the evidence of observation and experiments over
     a hundred years by thousands of scientists supports evolution.[16] The result of four billion years of evolution is the
     diversity of life around us, with an estimated 1.75 million different species in existence today.[5] [62]
     See also
     •   Creation-evolution controversy
     •   Evidence of common descent
     •   Evolution as theory and fact
     •   Level of support for evolution
     •   Misconceptions about evolution
     Notes
     [1] Darwin, Charles (1859). On the Origin of Species (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F373& viewtype=text&
         pageseq=16) (1st ed.). London: John Murray. p. 1. .. Related earlier ideas were acknowledged in Darwin, Charles (1861). On the Origin of
         Species (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F381& viewtype=text& pageseq=20) (3rd ed.). London: John Murray. xiii. .
     [2] Gould, Stephen J. (2002). The Structure of Evolutionary Theory. Harvard University Press. pp. 1433. ISBN 0674006135, 9780674006133.
     [3] Gregory, T. R. (2009). "Understanding Natural Selection: Essential Concepts and Common Misconceptions" (http:/ / www. springerlink.
         com/ content/ 2331741806807x22/ ). Evolution: Education and Outreach 2 (2): 156–175. doi:10.1007/s12052-009-0128-1. .
     [4] "An introduction to evolution" (http:/ / evolution. berkeley. edu/ evolibrary/ article/ 0_0_0/ evo_02) (web resource). Understanding
         Evolution: your one-stop source for information on evolution (http:/ / evolution. berkeley. edu/ evolibrary/ article/ 0_0_0/ evo_01). The
         University of California Museum of Paleontology, Berkeley. 2008. . Retrieved 2008-01-23
     [5] Cavalier-Smith T (2006). "Cell evolution and Earth history: stasis and revolution" (http:/ / www. ncbi. nlm. nih. gov/ pubmed/ 16754610).
         Philos Trans R Soc Lond B Biol Sci 361 (1470): 969–1006. doi:10.1098/rstb.2006.1842. PMID 16754610. PMC 1578732. . Retrieved
         2008-01-24.
     [6] Garvin-Doxas, K.; Klymkowsky, M. W. (2008). "Understanding Randomness and its Impact on Student Learning: Lessons Learned from
         Building the Biology Concept Inventory (BCI)" (http:/ / www. ncbi. nlm. nih. gov/ pmc/ articles/ PMC2424310/ ). CBE Life Sci Educ. 7 (2):
         227–233. doi:10.1187/cbe.07-08-0063. PMID 18519614. PMC 2424310. .
     [7] Raup, D. M. (1992). Extinction: bad genes or bad luck. (http:/ / books. google. com/ ?id=8klou91MwJoC& printsec=frontcover&
         dq=Extinction:+ bad+ genes+ or+ bad+ luck& cd=1#v=onepage& q=). New York, W. W.: Norton and Co.. pp. 210. ISBN 978-0393309270. .
     [8] Rhee, Sue Yon (1999). "Gregor Mendel" (http:/ / www. accessexcellence. org/ RC/ AB/ BC/ Gregor_Mendel. html). Access Excellence.
         National Health Museum. . Retrieved 2008-01-05.
     [9] Farber, P. L. (2000). Finding Order in Nature: The Natualist Tradition from Linnaeus to E. O. Wilson (http:/ / books. google. com/
         ?id=tyG4pfKJ8WEC& printsec=frontcover& dq=Finding+ Order+ in+ Nature:+ The+ Natualist+ Tradition+ from+ Linnaeus+ to+ E. + O. +
         Wilson& cd=1#v=onepage& q=). Baltimore and London: The Johns Hopkins University Press. pp. 136. ISBN 0-8018-6389-9. .
     [10] Watson, J. D. (2005). Darwin, The Indelible Stamp: The Evolution of an Idea (http:/ / books. google. com/ ?id=LEWfWf0mUJIC&
         printsec=frontcover& dq=Darwin:+ The+ Indelible+ Stamp:+ The+ Evolution+ of+ an+ Idea& cd=1#v=onepage& q=). Philadelphia and
         London: Running Press. pp. 1257. ISBN 13-978-0-7624-2136-7. .
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Introduction to evolution                                                                                                                               13
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Introduction to evolution                                                                                                                                 14
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     References
     • Carroll, SB; Grenier, J; Weatherbee, SD (2000). From DNA to Diversity: Molecular Genetics and the Evolution
       of Animal Design (2nd ed.). Oxford: Blackwell Publishing. ISBN 1-4051-1950-0
     • Darwin, Charles (1872). [[On the Origin of Species|The Origin of Species (http://darwin-online.org.uk/content/
       frameset?itemID=F391&viewtype=text&pageseq=1)]] (6th ed.). London: John Murray
     • Dawkins, Richard (1976). The Selfish Gene (http://www.scribd.com/doc/104123/
       Richard-Dawkins-The-Selfish-Gene-Original-Ed) (1st ed.). Oxford University Press. pp. 33. ISBN 0192860925
     • Diamond, Jared (1992). The Third Chimpanzee: the evolution and future of the human animal. New York:
       HarperCollins. ISBN 0060183071
     • Gould (a), Stephen Jay (1981). The Panda's Thumb: More Reflections in Natural History. New York: W.W,
       Norton & Company. ISBN 0393308197
     • Gould (b), Stephen Jay (1995). Dinosaur in a Haystack. New York: Harmony Books. ISBN 0517703939
     • Lyell, Charles (1830). Principles of geology (http://www.esp.org/books/lyell/principles/facsimile/). New
       York: Penguin Books. ISBN 014043528X
     • Mayr, Ernst (1970). Populations, Species, and Evolution. Cambridge, MA: Belknap Press of Harvard University
       Press. ISBN 0674690109
     • Mayr, Ernst (2001). What evolution is. New York: Basic Books. ISBN 0-465-04425-5
     • Tattersall, Ian (1995). The Fossil Trail: How We Know What We Think We Know About Human Evolution. New
       York: Oxford University Press. ISBN 0195061012
     • Weichert, Charles; Presch, William (1975). Elements of Chordate Anatomy. New York: McGraw-Hill.
       ISBN 0070690081
Introduction to evolution                                                                                                   15
     Further reading
     • Liam Neeson (narrator). (2001-11-20) (web resource). Evolution: a journey into where we're from and where
       we're going (http://www.pbs.org/wgbh/evolution/index.html). [DVD]. South Burlington, VT: WGBH Boston
       / PBS television series Nova. ASIN: B00005RG6J. Retrieved 2008-01-24. - Age level: Grade 7+
     • Horvitz, Leslie Alan (2002). The complete idiot's guide to evolution. Indianapolis: Alpha Books.
       ISBN 0028642260.
     • Charlesworth, Deborah; Charlesworth, Brian (2003). Evolution: a very short introduction. Oxford: Oxford
       University Press. ISBN 0192802518.
     • Sis, Peter (2003). The tree of life: a book depicting the life of Charles Darwin, naturalist, geologist & thinker.
       New York: Farrar Straus Giroux. ISBN 0-374-45628-3.
     • Thomson, Keith Stewart (2005). Fossils: a very short introduction. Oxford: Oxford University Press.
       ISBN 0192805045.
     • Greg Krukonis (2008). Evolution For Dummies (For Dummies (Math & Science)). For Dummies.
       ISBN 0-470-11773-7.
     • Darwin, Charles (2008). Quammen, David. ed. On the Origin of Species: The Illustrated Edition. Sterling.
       ISBN 1402756399
     • Pallan, Mark (2009). The Rough Guide to Evolution. Rough Guides. ISBN 1858289467
     • Zimmer, Carl (2009). The Tangled Bank: An Introduction to Evolution. Roberts and Company Publishers.
       ISBN 0981519474
     • Ellis, R. John (2010). How Science Works: Evolution. Springer. ISBN 9048131820
     External links
     • Brain, Marshall. "How Stuff Works: Evolution Library" (http://science.howstuffworks.com/evolution-channel.
       htm) (web resource). Howstuffworks.com. Retrieved 2008-01-24
     • Carl Sagan. (2006-07-06) (Google video). Carl Sagan on evolution (http://video.google.com/
       videoplay?docid=-522726029201501667&q=carl+sagan). [streaming video]. Google. Retrieved 2008-01-24.
     • Carl Sagan. (2006-10-21) (Youtube video). Theory of Evolution Explained (http://www.youtube.com/
       watch?v=E1Y5zMo74cY). [streaming video]. Youtube. Retrieved 2008-01-24.
     • "Evolution Education Wiki: EvoWiki" (http://wiki.cotch.net/) (web resource). Retrieved 2008-01-24
     • "The Big Picture on Evolution (PDF)" (http://www.wellcome.ac.uk/stellent/groups/corporatesite/
       @msh_publishing_group/documents/web_document/wtd026042.pdf). The Big Picture Series (http://www.
       wellcome.ac.uk/Professional-resources/Education-resources/Big-Picture/Evolution/). Wellcome Trust.
       January 2007. Retrieved 2008-01-23
     • "The Talk Origins Archive: Exploring the Creation/Evolution Controversy" (http://www.talkorigins.org/) (web
       resource). Retrieved 2008-01-24
     • (web resource) Understanding Evolution: your one-stop source for information on evolution (http://evolution.
       berkeley.edu/evolibrary/article/0_0_0/evo_01). The University of California Museum of Paleontology,
       Berkeley. Retrieved 2008-01-24
     • "University of Utah Genetics Learning Center animated tour of the basics of genetics" (http://learn.genetics.
       utah.edu/units/basics/tour) (web resource). Howstuffworks.com. Retrieved 2008-01-24
     • "Introduction To Evolution" (http://www.vectorsite.net/taevo.html) (web resource). vectorsite.net. Retrieved
       2010-06-01
Evolution                                                                                                                      16
    Evolution
    Evolution (also known as biological, genetic or organic evolution) is the change in the inherited traits of a
    population of organisms through successive generations.[1] This change results from interactions between processes
    that introduce variation into a population, and other processes that remove it. As a result, variants with particular
    traits become more, or less, common. A trait is a particular characteristic—anatomical, biochemical or
    behavioural—that is the result of gene–environment interaction.
    The main source of variation is mutation, which introduces genetic changes. These changes are heritable (can be
    passed on through reproduction), and may give rise to alternative traits in organisms. Another source of variation is
    genetic recombination, which shuffles the genes into new combinations which can result in organisms exhibiting
    different traits. Under certain circumstances, variation can also be increased by the transfer of genes between
    species,[2] [3] and by the extremely rare, but significant, wholesale incorporation of genomes through
    endosymbiosis.[4] [5]
    Two main processes cause variants to become more common or rarer in a population. One is natural selection,
    through which traits that aid survival and reproduction become more common, while traits that hinder survival and
    reproduction become rarer. Natural selection occurs because only a small proportion of individuals in each
    generation will survive and reproduce, since resources are limited and organisms produce many more offspring than
    their environment can support. Over many generations, heritable variation in traits is filtered by natural selection and
    the beneficial changes are successively retained through differential survival and reproduction. This iterative process
    adjusts traits so they become better suited to an organism's environment: these adjustments are called adaptations.[6]
    However, not all change is adaptive. Another cause of evolution is genetic drift, which leads to random changes in
    how common traits are in a population. Genetic drift is most important when traits do not strongly influence
    survival—particularly so in small populations, in which chance plays a disproportionate role in the frequency of
    traits passed on to the next generation.[7] [8] Genetic drift is important in the neutral theory of molecular evolution,
    and plays a role in the molecular clocks that are used in phylogenetic studies.
    A key process in evolution is speciation, in which a single ancestral species splits and diversifies into multiple new
    species. There are several modes through which this occurs. Ultimately, all living (and extinct) species are descended
    from a common ancestor via a long series of speciation events. These events stretch back in a diverse "tree of life"
    which has grown over the 3.5 billion years during which life has existed on Earth.[9] [10] [11] [12] This is visible in
    anatomical, genetic and other similarities between groups of organisms, geographical distribution of related species,
    the fossil record and the recorded genetic changes in living organisms over many generations.
    Evolutionary biologists document the fact that evolution occurs, and also develop and test theories which explain its
    causes. The study of evolutionary biology began in the mid-nineteenth century, when research into the fossil record
    and the diversity of living organisms convinced most scientists that species changed over time.[13] The mechanism
    driving these changes remained unclear until the theory of natural selection was independently proposed by Charles
    Darwin and Alfred Wallace. In 1859, Darwin's seminal work On the Origin of Species brought the new theory of
    evolution by natural selection to a wide audience,[14] leading to the overwhelming acceptance of evolution among
    scientists.[15] [16] [17] [18] In the 1930s, Darwinian natural selection became understood in combination with
    Mendelian inheritance, forming the modern evolutionary synthesis,[19] which connected the substrate of evolution
    (inherited genetics) and the mechanism of evolution (natural selection). This powerful explanatory and predictive
    theory has become the central organizing principle of modern biology, directing research and providing a unifying
    explanation for the history and diversity of life on Earth.[16] [17] [20] Evolution is applied and studied in fields as
    diverse as agriculture, anthropology, conservation biology, ecology, medicine, paleontology, philosophy, and
    psychology along with other specific topics in the previous listed fields.
Evolution                                                                                                                      17
    Debate about the mechanisms of evolution continued, and Darwin could not explain the source of the heritable
    variations which would be acted on by natural selection.[24] Like Lamarck, he still thought that parents passed on
    adaptations acquired during their lifetimes,[25] a theory which was subsequently dubbed Lamarckism.[26] In the
    1880s, August Weismann's experiments indicated that changes from use and disuse were not heritable, and
    Lamarckism gradually fell from favour.[27] [28] More significantly, Darwin could not account for how traits were
    passed down from generation to generation. In 1865 Gregor Mendel found that traits were inherited in a predictable
    manner.[29] When Mendel's work was rediscovered in 1900s, disagreements over the rate of evolution predicted by
    early geneticists and biometricians led to a rift between the Mendelian and Darwinian models of evolution.
    Yet it was the rediscovery of Gregor Mendel's pioneering work on the fundamentals of genetics (of which Darwin
    and Wallace were unaware) by Hugo de Vries and others in the early 1900s that provided the impetus for a better
    understanding of how variation occurs in plant and animal traits. That variation is the main fuel used by natural
    selection to shape the wide variety of adaptive traits observed in organic life. Even though Hugo de Vries and other
    early geneticists rejected gradual natural selection, their rediscovery of and subsequent work on genetics eventually
    provided a solid basis on which the theory of evolution stood even more convincingly than when it was originally
    proposed.[30]
    The apparent contradiction between Darwin's theory of evolution by natural selection and Mendel's work was
    reconciled in the 1920s and 1930s by evolutionary biologists such as J.B.S. Haldane, Sewall Wright, and particularly
    Ronald Fisher, who set the foundations for the establishment of the field of population genetics. The end result was a
    combination of evolution by natural selection and Mendelian inheritance, the modern evolutionary synthesis.[31] In
    the 1940s, the identification of DNA as the genetic material by Oswald Avery and colleagues and the subsequent
    publication of the structure of DNA by James Watson and Francis Crick in 1953, demonstrated the physical basis for
    inheritance. Since then, genetics and molecular biology have become core parts of evolutionary biology and have
    revolutionised the field of phylogenetics.[19]
    In its early history, evolutionary biology primarily drew in scientists from traditional taxonomically oriented
    disciplines, whose specialist training in particular organisms addressed general questions in evolution. As
    evolutionary biology expanded as an academic discipline, particularly after the development of the modern
    evolutionary synthesis, it began to draw more widely from the biological sciences.[19] Currently the study of
    evolutionary biology involves scientists from fields as diverse as biochemistry, ecology, genetics and physiology,
    and evolutionary concepts are used in even more distant disciplines such as psychology, medicine, philosophy and
Evolution                                                                                                                        18
    computer science. In the 21st century, current research in evolutionary biology deals with several areas where the
    modern evolutionary synthesis may need modification or extension, such as assessing the relative importance of
    various ideas on the unit of selection and evolvability and how to fully incorporate the findings of evolutionary
    developmental biology.[32] [33]
    Heredity
    Evolution in organisms occurs through changes in heritable traits –
    particular characteristics of an organism. In humans, for example, eye
    colour is an inherited characteristic and an individual might inherit the
    "brown-eye trait" from one of their parents.[34] Inherited traits are
    controlled by genes and the complete set of genes within an organism's
    genome is called its genotype.[35]
    The complete set of observable traits that make up the structure and
    behavior of an organism is called its phenotype. These traits come from the
    interaction of its genotype with the environment.[36] As a result, many
    aspects of an organism's phenotype are not inherited. For example,
    suntanned skin comes from the interaction between a person's genotype and
    sunlight; thus, suntans are not passed on to people's children. However,
    some people tan more easily than others, due to differences in their
    genotype; a striking example are people with the inherited trait of albinism,
    who do not tan at all and are very sensitive to sunburn.[37]
    Heritable traits are passed from one generation to the next via DNA, a
    molecule that encodes genetic information.[35] DNA is a long polymer
    composed of four types of bases. The sequence of bases along a particular
    DNA molecule specify the genetic information, in a manner similar to a             DNA structure. Bases are in the center,
    sequence of letters spelling out a sentence. Before a cell divides, the DNA      surrounded by phosphate–sugar chains in a
                                                                                                   double helix.
    is copied, so that each of the resulting two cells will inherit the DNA
    sequence.
    Portions of a DNA molecule that specify a single functional unit are called genes; different genes have different
    sequences of bases. Within cells, the long strands of DNA form condensed structures called chromosomes. The
    specific location of a DNA sequence within a chromosome is known as a locus. If the DNA sequence at a locus
    varies between individuals, the different forms of this sequence are called alleles. DNA sequences can change
    through mutations, producing new alleles. If a mutation occurs within a gene, the new allele may affect the trait that
    the gene controls, altering the phenotype of the organism.
    However, while this simple correspondence between an allele and a trait works in some cases, most traits are more
    complex and are controlled by multiple interacting genes.[38] [39] The study of such complex traits is a major area of
    current genetic research. Another unsolved question in genetics is whether or not epigenetics is important in
    evolution. Epigenetics is when a trait is inherited without there being any change in gene sequences.[40]
Evolution                                                                                                                     19
    Variation
    An individual organism's phenotype results from both its genotype and the influence from the environment it has
    lived in. A substantial part of the variation in phenotypes in a population is caused by the differences between their
    genotypes.[39] The modern evolutionary synthesis defines evolution as the change over time in this genetic variation.
    The frequency of one particular allele will fluctuate, becoming more or less prevalent relative to other forms of that
    gene. Evolutionary forces act by driving these changes in allele frequency in one direction or another. Variation
    disappears when a new allele reaches the point of fixation — when it either disappears from the population or
    replaces the ancestral allele entirely.[41]
    Variation comes from mutations in genetic material, migration between populations (gene flow), and the reshuffling
    of genes through sexual reproduction. Variation also comes from exchanges of genes between different species; for
    example, through horizontal gene transfer in bacteria, and hybridization in plants.[42] Despite the constant
    introduction of variation through these processes, most of the genome of a species is identical in all individuals of
    that species.[43] However, even relatively small changes in genotype can lead to dramatic changes in phenotype: for
    example, chimpanzees and humans differ in only about 5% of their genomes.[44]
    Mutation
                                  Random mutations constantly occur in the genomes of organisms; these mutations create
                                  genetic variation. Mutations are changes in the DNA sequence of a cell's genome and are
                                  caused by radiation, viruses, transposons and mutagenic chemicals, as well as errors that
                                  occur during meiosis or DNA replication.[45] [46] [47] These mutations involve several
                                  different types of change in DNA sequences; these can either have no effect, alter the
                                  product of a gene, or prevent the gene from functioning. Studies in the fly Drosophila
                                  melanogaster suggest that if a mutation changes a protein produced by a gene, this will
                                  probably be harmful, with about 70 percent of these mutations having damaging effects,
                                  and the remainder being either neutral or weakly beneficial.[48] Due to the damaging
                                  effects that mutations can have on cells, organisms have evolved mechanisms such as
                                  DNA repair to remove mutations.[45] Therefore, the optimal mutation rate for a species is
                                  a trade-off between costs of a high mutation rate, such as deleterious mutations, and the
                                  metabolic costs of maintaining systems to reduce the mutation rate, such as DNA repair
                                  enzymes.[49] Viruses that use RNA as their genetic material have rapid mutation
                                  rates,[50] which can be an advantage since these viruses will evolve constantly and
                                  rapidly, and thus evade the defensive responses of e.g. the human immune system.[51]
       Duplication of part of a  Mutations can involve large sections of a chromosome becoming duplicated (usually by
           chromosome            genetic recombination), which can introduce extra copies of a gene into a genome.[52]
                                 Extra copies of genes are a major source of the raw material needed for new genes to
            [53]
    evolve.      This is important because most new genes evolve within gene families from pre-existing genes that share
    common ancestors.[54] For example, the human eye uses four genes to make structures that sense light: three for
    colour vision and one for night vision; all four are descended from a single ancestral gene.[55] New genes can be
    created from an ancestral gene when a duplicate copy mutates and acquires a new function. This process is easier
    once a gene has been duplicated because it increases the redundancy of the system; one gene in the pair can acquire a
    new function while the other copy continues to perform its original function.[56] [57] Other types of mutation can
    even create entirely new genes from previously noncoding DNA.[58] [59] The creation of new genes can also involve
    small parts of several genes being duplicated, with these fragments then recombining to form new combinations with
    new functions.[60] [61] When new genes are assembled from shuffling pre-existing parts, domains act as modules
Evolution                                                                                                                       20
    with simple independent functions, which can be mixed together creating new combinations with new and complex
    functions.[62] For example, polyketide synthases are large enzymes that make antibiotics; they contain up to one
    hundred independent domains that each catalyze one step in the overall process, like a step in an assembly line.[63]
    Changes in chromosome number may involve even larger mutations, where segments of the DNA within
    chromosomes break and then rearrange. For example, two chromosomes in the Homo genus fused to produce human
    chromosome 2; this fusion did not occur in the lineage of the other apes, and they retain these separate
    chromosomes.[64] In evolution, the most important role of such chromosomal rearrangements may be to accelerate
    the divergence of a population into new species by making populations less likely to interbreed, and thereby
    preserving genetic differences between these populations.[65]
    Sequences of DNA that can move about the genome, such as transposons, make up a major fraction of the genetic
    material of plants and animals, and may have been important in the evolution of genomes.[66] For example, more
    than a million copies of the Alu sequence are present in the human genome, and these sequences have now been
    recruited to perform functions such as regulating gene expression.[67] Another effect of these mobile DNA sequences
    is that when they move within a genome, they can mutate or delete existing genes and thereby produce genetic
    diversity.[46]
Population genetics
    Gene flow
                                                                    Gene flow is the exchange of genes between
                                                                    populations, which are usually of the same species.[86]
                                                                    Examples of gene flow within a species include the
                                                                    migration and then breeding of organisms, or the
                                                                    exchange of pollen. Gene transfer between species
                                                                    includes the formation of hybrid organisms and
                                                                    horizontal gene transfer.
    Depending on how far two species have diverged since their most recent common ancestor, it may still be possible
    for them to produce offspring, as with horses and donkeys mating to produce mules.[88] Such hybrids are generally
    infertile, due to the two different sets of chromosomes being unable to pair up during meiosis. In this case, closely
    related species may regularly interbreed, but hybrids will be selected against and the species will remain distinct.
    However, viable hybrids are occasionally formed and these new species can either have properties intermediate
    between their parent species, or possess a totally new phenotype.[89] The importance of hybridization in creating new
    species of animals is unclear, although cases have been seen in many types of animals,[90] with the gray tree frog
    being a particularly well-studied example.[91]
    Hybridization is, however, an important means of speciation in plants, since polyploidy (having more than two
    copies of each chromosome) is tolerated in plants more readily than in animals.[92] [93] Polyploidy is important in
    hybrids as it allows reproduction, with the two different sets of chromosomes each being able to pair with an
    identical partner during meiosis.[94] Polyploids also have more genetic diversity, which allows them to avoid
    inbreeding depression in small populations.[95]
    Horizontal gene transfer is the transfer of genetic material from one organism to another organism that is not its
    offspring; this is most common among bacteria.[96] In medicine, this contributes to the spread of antibiotic resistance,
    as when one bacteria acquires resistance genes it can rapidly transfer them to other species.[97] Horizontal transfer of
    genes from bacteria to eukaryotes such as the yeast Saccharomyces cerevisiae and the adzuki bean beetle
    Callosobruchus chinensis may also have occurred.[98] [99] An example of larger-scale transfers are the eukaryotic
    bdelloid rotifers, which appear to have received a range of genes from bacteria, fungi, and plants.[100] Viruses can
    also carry DNA between organisms, allowing transfer of genes even across biological domains.[101] Large-scale gene
    transfer has also occurred between the ancestors of eukaryotic cells and prokaryotes, during the acquisition of
    chloroplasts and mitochondria.[102]
Evolution                                                                                                                        23
    Mechanisms
    The two main mechanisms that produce evolution are natural selection and genetic drift. Natural selection is the
    process which favors genes that aid survival and reproduction. Genetic drift is the random change in the frequency of
    alleles, caused by the random sampling of a generation's genes during reproduction. The relative importance of
    natural selection and genetic drift in a population varies depending on the strength of the selection and the effective
    population size, which is the number of individuals capable of breeding.[103] Natural selection usually predominates
    in large populations, whereas genetic drift dominates in small populations. The dominance of genetic drift in small
    populations can even lead to the fixation of slightly deleterious mutations.[104] As a result, changing population size
    can dramatically influence the course of evolution. Population bottlenecks, where the population shrinks temporarily
    and therefore loses genetic variation, result in a more uniform population.[41]
    Natural selection
    Natural selection is the process by which
    genetic mutations that enhance reproduction
    become, and remain, more common in
    successive generations of a population. It
    has often been called a "self-evident"
    mechanism because it necessarily follows
    from three simple facts:
    The central concept of natural selection is the evolutionary fitness of an organism.[106] Fitness is measured by an
    organism's ability to survive and reproduce, which determines the size of its genetic contribution to the next
    generation.[106] However, fitness is not the same as the total number of offspring: instead fitness is indicated by the
    proportion of subsequent generations that carry an organism's genes.[107] For example, if an organism could survive
    well and reproduce rapidly, but its offspring were all too small and weak to survive, this organism would make little
    genetic contribution to future generations and would thus have low fitness.[106]
    If an allele increases fitness more than the other alleles of that gene, then with each generation this allele will become
    more common within the population. These traits are said to be "selected for". Examples of traits that can increase
    fitness are enhanced survival, and increased fecundity. Conversely, the lower fitness caused by having a less
    beneficial or deleterious allele results in this allele becoming rarer — they are "selected against".[108] Importantly,
    the fitness of an allele is not a fixed characteristic; if the environment changes, previously neutral or harmful traits
    may become beneficial and previously beneficial traits become harmful.[1] However, even if the direction of
    selection does reverse in this way, traits that were lost in the past may not re-evolve in an identical form (see Dollo's
    law).[109] [110]
Evolution                                                                                                                           24
    Natural selection most generally makes nature the measure against which individuals, and individual traits, are more
    or less likely to survive. "Nature" in this sense refers to an ecosystem, that is, a system in which organisms interact
    with every other element, physical as well as biological, in their local environment. Eugene Odum, a founder of
    ecology, defined an ecosystem as: "Any unit that includes all of the organisms...in a given area interacting with the
    physical environment so that a flow of energy leads to clearly defined trophic structure, biotic diversity, and material
    cycles (ie: exchange of materials between living and nonliving parts) within the system."[116] Each population within
    an ecosystem occupies a distinct niche, or position, with distinct relationships to other parts of the system. These
    relationships involve the life history of the organism, its position in the food chain, and its geographic range. This
    broad understanding of nature enables scientists to delineate specific forces which, together, comprise natural
    selection.
    An active area of research is the unit of selection, with natural selection being proposed to work at the level of genes,
    cells, individual organisms, groups of organisms and species.[117] [118] None of these are mutually exclusive and
    selection can act on multiple levels simultaneously.[119] An example of selection occurring below the level of the
    individual organism are genes called transposons, which can replicate and spread throughout a genome.[120]
    Selection at a level above the individual, such as group selection, may allow the evolution of co-operation, as
    discussed below.[121]
Evolution                                                                                                                                  25
    Genetic drift
    Genetic drift is the change in allele frequency from one
    generation to the next that occurs because alleles in
    offspring are a random sample of those in the parents,
    as well as from the role that chance plays in
    determining whether a given individual will survive
    and reproduce. In mathematical terms, alleles are
    subject to sampling error. As a result, when selective
    forces are absent or relatively weak, allele frequencies
    tend to "drift" upward or downward randomly (in a
    random walk). This drift halts when an allele
    eventually becomes fixed, either by disappearing from
    the population, or replacing the other alleles entirely.
    Genetic drift may therefore eliminate some alleles from
    a population due to chance alone. Even in the absence
    of selective forces, genetic drift can cause two separate
    populations that began with the same genetic structure
    to drift apart into two divergent populations with
    different sets of alleles.[122]                              Simulation of genetic drift of 20 unlinked alleles in populations of 10
                                                                  (top) and 100 (bottom). Drift to fixation is more rapid in the smaller
                                                                                               population.
    The time for an allele to become fixed by genetic drift
    depends on population size, with fixation occurring
    more rapidly in smaller populations.[123] The precise measure of population that is important is called the effective
    population size. The effective population is always smaller than the total population since it takes into account
    factors such as the level of inbreeding, the number of animals that are too old or young to breed, and the lower
    probability of animals that live far apart managing to mate with each other.[124]
    An example when genetic drift is probably of central importance in determining a trait is the loss of pigments from
    animals that live in caves, a change that produces no obvious advantage or disadvantage in complete darkness.[125]
    However, it is usually difficult to measure the relative importance of selection and drift,[126] so the comparative
    importance of these two forces in driving evolutionary change is an area of current research.[127] These
    investigations were prompted by the neutral theory of molecular evolution, which proposed that most evolutionary
    changes are the result of the fixation of neutral mutations that do not have any immediate effects on the fitness of an
    organism.[128] Hence, in this model, most genetic changes in a population are the result of constant mutation
    pressure and genetic drift.[129] This form of the neutral theory is now largely abandoned, since it does not seem to fit
    the genetic variation seen in nature.[130] [131] However, a more recent and better-supported version of this model is
    the nearly neutral theory, where most mutations only have small effects on fitness.[105]
    Outcomes
    Evolution influences every aspect of the form and behavior of organisms. Most prominent are the specific behavioral
    and physical adaptations that are the outcome of natural selection. These adaptations increase fitness by aiding
    activities such as finding food, avoiding predators or attracting mates. Organisms can also respond to selection by
    co-operating with each other, usually by aiding their relatives or engaging in mutually beneficial symbiosis. In the
    longer term, evolution produces new species through splitting ancestral populations of organisms into new groups
    that cannot or will not interbreed.
    These outcomes of evolution are sometimes divided into macroevolution, which is evolution that occurs at or above
    the level of species, such as extinction and speciation, and microevolution, which is smaller evolutionary changes,
Evolution                                                                                                                        26
    such as adaptations, within a species or population.[132] In general, macroevolution is regarded as the outcome of
    long periods of microevolution.[133] Thus, the distinction between micro- and macroevolution is not a fundamental
    one – the difference is simply the time involved.[134] However, in macroevolution, the traits of the entire species may
    be important. For instance, a large amount of variation among individuals allows a species to rapidly adapt to new
    habitats, lessening the chance of it going extinct, while a wide geographic range increases the chance of speciation,
    by making it more likely that part of the population will become isolated. In this sense, microevolution and
    macroevolution might involve selection at different levels – with microevolution acting on genes and organisms,
    versus macroevolutionary processes such as species selection acting on entire species and affecting their rates of
    speciation and extinction.[135] [136] [137]
    A common misconception is that evolution has goals or long-term plans; realistically however, evolution has no
    long-term goal and does not necessarily produce greater complexity.[138] [139] Although complex species have
    evolved, they occur as a side effect of the overall number of organisms increasing, and simple forms of life still
    remain more common in the biosphere.[140] For example, the overwhelming majority of species are microscopic
    prokaryotes, which form about half the world's biomass despite their small size,[141] and constitute the vast majority
    of Earth's biodiversity.[142] Simple organisms have therefore been the dominant form of life on Earth throughout its
    history and continue to be the main form of life up to the present day, with complex life only appearing more diverse
    because it is more noticeable.[143] Indeed, the evolution of microorganisms is particularly important to modern
    evolutionary research, since their rapid reproduction allows the study of experimental evolution and the observation
    of evolution and adaptation in real time.[144] [145]
    Adaptation
    Adaptation is one of the basic phenomena of biology,[146] and is the process whereby an organism becomes better
    suited to its habitat.[147] [148] Also, the term adaptation may refer to a trait that is important for an organism's
    survival. For example, the adaptation of horses' teeth to the grinding of grass, or the ability of horses to run fast and
    escape predators. By using the term adaptation for the evolutionary process, and adaptive trait for the product (the
    bodily part or function), the two senses of the word may be distinguished. Adaptations are produced by natural
    selection.[149] The following definitions are due to Theodosius Dobzhansky.
            1. Adaptation is the evolutionary process whereby an organism becomes better able to live in its habitat or
            habitats.[150]
            2. Adaptedness is the state of being adapted: the degree to which an organism is able to live and reproduce in a
            given set of habitats.[151]
            3. An adaptive trait is an aspect of the developmental pattern of the organism which enables or enhances the
            probability of that organism surviving and reproducing.[152]
    Adaptation may cause either the gain of a new feature, or the loss of an ancestral feature. An example that shows
    both types of change is bacterial adaptation to antibiotic selection, with genetic changes causing antibiotic resistance
    by both modifying the target of the drug, or increasing the activity of transporters that pump the drug out of the
    cell.[153] Other striking examples are the bacteria Escherichia coli evolving the ability to use citric acid as a nutrient
    in a long-term laboratory experiment,[154] Flavobacterium evolving a novel enzyme that allows these bacteria to
    grow on the by-products of nylon manufacturing,[155] [156] and the soil bacterium Sphingobium evolving an entirely
    new metabolic pathway that degrades the synthetic pesticide pentachlorophenol.[157] [158] An interesting but still
    controversial idea is that some adaptations might increase the ability of organisms to generate genetic diversity and
    adapt by natural selection (increasing organisms' evolvability).[159] [160]
Evolution                                                                                                                                   27
    During adaptation, some structures may lose their original function and become vestigial structures.[166] Such
    structures may have little or no function in a current species, yet have a clear function in ancestral species, or other
    closely related species. Examples include pseudogenes,[167] the non-functional remains of eyes in blind
    cave-dwelling fish,[168] wings in flightless birds,[169] and the presence of hip bones in whales and snakes.[161]
    Examples of vestigial structures in humans include wisdom teeth,[170] the coccyx,[166] the vermiform appendix,[166]
    and other behavioral vestiges such as goose bumps,[171] and primitive reflexes.[172] [173] [174] [175]
    However, many traits that appear to be simple adaptations are in fact exaptations: structures originally adapted for
    one function, but which coincidentally became somewhat useful for some other function in the process.[176] One
    example is the African lizard Holaspis guentheri, which developed an extremely flat head for hiding in crevices, as
    can be seen by looking at its near relatives. However, in this species, the head has become so flattened that it assists
    in gliding from tree to tree—an exaptation.[176] Within cells, molecular machines such as the bacterial flagella[177]
    and protein sorting machinery[178] evolved by the recruitment of several pre-existing proteins that previously had
    different functions.[132] Another example is the recruitment of enzymes from glycolysis and xenobiotic metabolism
    to serve as structural proteins called crystallins within the lenses of organisms' eyes.[179] [180]
    A critical principle of ecology is that of competitive exclusion: no two species can occupy the same niche in the
    same environment for a long time.[181] Consequently, natural selection will tend to force species to adapt to different
    ecological niches. This may mean that, for example, two species of cichlid fish adapt to live in different habitats,
    which will minimise the competition between them for food.[182]
    An area of current investigation in evolutionary developmental biology is the developmental basis of adaptations and
    exaptations.[183] This research addresses the origin and evolution of embryonic development and how modifications
    of development and developmental processes produce novel features.[184] These studies have shown that evolution
    can alter development to create new structures, such as embryonic bone structures that develop into the jaw in other
    animals instead forming part of the middle ear in mammals.[185] It is also possible for structures that have been lost
    in evolution to reappear due to changes in developmental genes, such as a mutation in chickens causing embryos to
    grow teeth similar to those of crocodiles.[186] It is now becoming clear that most alterations in the form of organisms
    are due to changes in a small set of conserved genes.[187]
Evolution                                                                                                                        28
    Co-evolution
    Interactions between organisms can produce both conflict and
    co-operation. When the interaction is between pairs of species, such as
    a pathogen and a host, or a predator and its prey, these species can
    develop matched sets of adaptations. Here, the evolution of one species
    causes adaptations in a second species. These changes in the second
    species then, in turn, cause new adaptations in the first species. This
    cycle of selection and response is called co-evolution.[188] An example
    is the production of tetrodotoxin in the rough-skinned newt and the
    evolution of tetrodotoxin resistance in its predator, the common garter
    snake. In this predator-prey pair, an evolutionary arms race has
                                                                                    Common garter snake (Thamnophis sirtalis
    produced high levels of toxin in the newt and correspondingly high               sirtalis) which has evolved resistance to
    levels of toxin resistance in the snake.[189]                                       tetrodotoxin in its amphibian prey.
    Co-operation
    However, not all interactions between species involve conflict.[190] Many cases of mutually beneficial interactions
    have evolved. For instance, an extreme cooperation exists between plants and the mycorrhizal fungi that grow on
    their roots and aid the plant in absorbing nutrients from the soil.[191] This is a reciprocal relationship as the plants
    provide the fungi with sugars from photosynthesis. Here, the fungi actually grow inside plant cells, allowing them to
    exchange nutrients with their hosts, while sending signals that suppress the plant immune system.[192]
    Coalitions between organisms of the same species have also evolved. An extreme case is the eusociality found in
    social insects, such as bees, termites and ants, where sterile insects feed and guard the small number of organisms in
    a colony that are able to reproduce. On an even smaller scale, the somatic cells that make up the body of an animal
    limit their reproduction so they can maintain a stable organism, which then supports a small number of the animal's
    germ cells to produce offspring. Here, somatic cells respond to specific signals that instruct them whether to grow,
    remain as they are, or die. If cells ignore these signals and multiply inappropriately, their uncontrolled growth causes
    cancer.[45]
    Such cooperation within species may have evolved through the process of kin selection, which is where one
    organism acts to help raise a relative's offspring.[193] This activity is selected for because if the helping individual
    contains alleles which promote the helping activity, it is likely that its kin will also contain these alleles and thus
    those alleles will be passed on.[194] Other processes that may promote cooperation include group selection, where
    cooperation provides benefits to a group of organisms.[195]
Evolution                                                                                                                       29
    Speciation
                                                                                  Speciation is the process where a
                                                                                  species diverges into two or more
                                                                                  descendant species.[196] Evolutionary
                                                                                  biologists view species as statistical
                                                                                  phenomena and not categories or
                                                                                  types. This view is counterintuitive
                                                                                  since the classical idea of species is
                                                                                  still widely held, with a species seen as
                                                                                  a class of organisms exemplified by a
                                                                                  "type specimen" that bears all the traits
                                                                                  common to this species. Instead, a
                                                                                  species is now defined as a separately
                                                                                  evolving lineage that forms a single
                                                                                  gene pool. Although properties such as
                                                                                  genetics and morphology are used to
                                                                                  help separate closely related lineages,
                                                                                  this      definition       has      fuzzy
                                                                                               [197]
                                                                                  boundaries.         Indeed, the exact
                            The four mechanisms of speciation.                    definition  of the term  "species" is still
                                                                                  controversial,        particularly      in
                 [198]                                         [199]
    prokaryotes,       and this is called the species problem.       Biologists have proposed a range of more precise
    definitions, but the definition used is a pragmatic choice that depends on the particularities of the species
    concerned.[199] Typically the actual focus on biological study is the population, an observable interacting group of
    organisms, rather than a species, an observable similar group of individuals.
    Speciation has been observed multiple times under both controlled laboratory conditions and in nature.[200] In
    sexually reproducing organisms, speciation results from reproductive isolation followed by genealogical divergence.
    There are four mechanisms for speciation. The most common in animals is allopatric speciation, which occurs in
    populations initially isolated geographically, such as by habitat fragmentation or migration. Selection under these
    conditions can produce very rapid changes in the appearance and behaviour of organisms.[201] [202] As selection and
    drift act independently on populations isolated from the rest of their species, separation may eventually produce
    organisms that cannot interbreed.[203]
    The second mechanism of speciation is peripatric speciation, which occurs when small populations of organisms
    become isolated in a new environment. This differs from allopatric speciation in that the isolated populations are
    numerically much smaller than the parental population. Here, the founder effect causes rapid speciation through both
    rapid genetic drift and selection on a small gene pool.[204]
    The third mechanism of speciation is parapatric speciation. This is similar to peripatric speciation in that a small
    population enters a new habitat, but differs in that there is no physical separation between these two populations.
    Instead, speciation results from the evolution of mechanisms that reduce gene flow between the two populations.[196]
    Generally this occurs when there has been a drastic change in the environment within the parental species' habitat.
    One example is the grass Anthoxanthum odoratum, which can undergo parapatric speciation in response to localised
    metal pollution from mines.[205] Here, plants evolve that have resistance to high levels of metals in the soil. Selection
    against interbreeding with the metal-sensitive parental population produced a gradual change in the flowering time of
    the metal-resistant plants, which eventually produced complete reproductive isolation. Selection against hybrids
    between the two populations may cause reinforcement, which is the evolution of traits that promote mating within a
    species, as well as character displacement, which is when two species become more distinct in appearance.[206]
Evolution                                                                                                                         30
    Speciation events are important in the theory of punctuated equilibrium, which accounts for the pattern in the fossil
    record of short "bursts" of evolution interspersed with relatively long periods of stasis, where species remain
    relatively unchanged.[214] In this theory, speciation and rapid evolution are linked, with natural selection and genetic
    drift acting most strongly on organisms undergoing speciation in novel habitats or small populations. As a result, the
    periods of stasis in the fossil record correspond to the parental population, and the organisms undergoing speciation
    and rapid evolution are found in small populations or geographically restricted habitats, and therefore rarely being
    preserved as fossils.[215]
    Extinction
                                                                 Extinction is the disappearance of an entire species.
                                                                 Extinction is not an unusual event, as species regularly
                                                                 appear through speciation, and disappear through
                                                                 extinction.[216] Nearly all animal and plant species that have
                                                                 lived on Earth are now extinct,[217] and extinction appears
                                                                 to be the ultimate fate of all species.[218] These extinctions
                                                                 have happened continuously throughout the history of life,
                                                                 although the rate of extinction spikes in occasional mass
                                                                 extinction events.[219] The Cretaceous–Tertiary extinction
                                                                 event, during which the non-avian dinosaurs went extinct, is
         Tyrannosaurus rex. Non-avian dinosaurs died out in the
          Cretaceous–Tertiary extinction event at the end of the the most well-known, but the earlier Permian–Triassic
                          Cretaceous period.                     extinction event was even more severe, with approximately
                                                                 96 percent of species driven to extinction.[219] The
    Holocene extinction event is an ongoing mass extinction associated with humanity's expansion across the globe over
    the past few thousand years. Present-day extinction rates are 100–1000 times greater than the background rate, and
Evolution                                                                                                                     31
    up to 30 percent of species may be extinct by the mid 21st century.[220] Human activities are now the primary cause
    of the ongoing extinction event;[221] global warming may further accelerate it in the future.[222]
    The role of extinction in evolution is not very well understood and may depend on which type of extinction is
    considered.[219] The causes of the continuous "low-level" extinction events, which form the majority of extinctions,
    may be the result of competition between species for limited resources (competitive exclusion).[19] If one species can
    out-compete another, this could produce species selection, with the fitter species surviving and the other species
    being driven to extinction.[117] The intermittent mass extinctions are also important, but instead of acting as a
    selective force, they drastically reduce diversity in a nonspecific manner and promote bursts of rapid evolution and
    speciation in survivors.[223]
    Origin of life
    The origin of life is a necessary precursor for biological evolution, but understanding that evolution occurred once
    organisms appeared and investigating how this happens does not depend on understanding exactly how life
    began.[224] The current scientific consensus is that the complex biochemistry that makes up life came from simpler
    chemical reactions, but it is unclear how this occurred.[225] Not much is certain about the earliest developments in
    life, the structure of the first living things, or the identity and nature of any last universal common ancestor or
    ancestral gene pool.[226] [227] Consequently, there is no scientific consensus on how life began, but proposals include
    self-replicating molecules such as RNA,[228] and the assembly of simple cells.[229]
    Common descent
    All organisms on Earth are descended
    from a common ancestor or ancestral
    gene pool.[163] [230] Current species are
    a stage in the process of evolution, with
    their diversity the product of a long
    series of speciation and extinction
    events.[231] The common descent of
    organisms was first deduced from four
    simple facts about organisms: First,
    they have geographic distributions that
    cannot be explained by local adaptation.
    Second, the diversity of life is not a set                The hominoids are descendants of a common ancestor.
    of completely unique organisms, but
    organisms that share morphological similarities. Third, vestigial traits with no clear purpose resemble functional
    ancestral traits, and finally, that organisms can be classified using these similarities into a hierarchy of nested
    groups – similar to a family tree.[14] However, modern research has suggested that, due to horizontal gene transfer,
    this "tree of life" may be more complicated than a simple branching tree since some genes have spread independently
    between distantly related species.[232] [233]
    Past species have also left records of their evolutionary history. Fossils, along with the comparative anatomy of
    present-day organisms, constitute the morphological, or anatomical, record.[234] By comparing the anatomies of both
    modern and extinct species, paleontologists can infer the lineages of those species. However, this approach is most
    successful for organisms that had hard body parts, such as shells, bones or teeth. Further, as prokaryotes such as
    bacteria and archaea share a limited set of common morphologies, their fossils do not provide information on their
    ancestry.
Evolution                                                                                                                                  32
    More recently, evidence for common descent has come from the study of biochemical similarities between
    organisms. For example, all living cells use the same basic set of nucleotides and amino acids.[235] The development
    of molecular genetics has revealed the record of evolution left in organisms' genomes: dating when species diverged
    through the molecular clock produced by mutations.[236] For example, these DNA sequence comparisons have
    revealed that humans and chimpanzees share 96% of their genomes and analyzing the few areas where they differ
    helps shed light on when the common ancestor of these species existed.[237]
    Evolution of life
                                                                                           Despite the uncertainty on how life
                                                                                           began, it is generally accepted that
                                                                                           prokaryotes inhabited the Earth from
                                                                                           approximately 3–4 billion years
                                                                                           ago.[238] [239] No obvious changes in
                                                                                           morphology or cellular organization
                                                                                           occurred in these organisms over the
                                                                                           next few billion years.[240]
    The history of life was that of the unicellular eukaryotes, prokaryotes, and archaea until about 610 million years ago
    when multicellular organisms began to appear in the oceans in the Ediacaran period.[238] [244] The evolution of
    multicellularity occurred in multiple independent events, in organisms as diverse as sponges, brown algae,
    cyanobacteria, slime moulds and myxobacteria.[245]
    Soon after the emergence of these first multicellular organisms, a remarkable amount of biological diversity
    appeared over approximately 10 million years, in an event called the Cambrian explosion. Here, the majority of
    types of modern animals appeared in the fossil record, as well as unique lineages that subsequently became
    extinct.[246] Various triggers for the Cambrian explosion have been proposed, including the accumulation of oxygen
    in the atmosphere from photosynthesis.[247] About 500 million years ago, plants and fungi colonised the land, and
    were soon followed by arthropods and other animals.[248] Insects were particularly successful and even today make
    up the majority of animal species.[249] Amphibians first appeared around 300 million years ago, followed by early
    amniotes, then mammals around 200 million years ago and birds around 100 million years ago (both from
    "reptile"-like lineages). However, despite the evolution of these large animals, smaller organisms similar to the types
    that evolved early in this process continue to be highly successful and dominate the Earth, with the majority of both
    biomass and species being prokaryotes.[142]
Evolution                                                                                                                           33
    Applications
    Evolutionary biology, and in particular the understanding of how organisms evolve through natural selection, is an
    area of science with many practical applications.[250] A major technological application of evolution is artificial
    selection, which is the intentional selection of certain traits in a population of organisms. Humans have used artificial
    selection for thousands of years in the domestication of plants and animals.[251] More recently, such selection has
    become a vital part of genetic engineering, with selectable markers such as antibiotic resistance genes being used to
    manipulate DNA in molecular biology. It is also possible to use repeated rounds of mutation and selection to evolve
    proteins with particular properties, such as modified enzymes or new antibodies, in a process called directed
    evolution.[252]
    Understanding the changes that have occurred during organism's evolution can reveal the genes needed to construct
    parts of the body, genes which may be involved in human genetic disorders.[253] For example, the Mexican tetra is
    an albino cavefish that lost its eyesight during evolution. Breeding together different populations of this blind fish
    produced some offspring with functional eyes, since different mutations had occurred in the isolated populations that
    had evolved in different caves.[254] This helped identify genes required for vision and pigmentation, such as
    crystallins and the melanocortin 1 receptor.[255] Similarly, comparing the genome of the Antarctic icefish, which
    lacks red blood cells, to close relatives such as the Antarctic rockcod revealed genes needed to make these blood
    cells.[256]
    As evolution can produce highly optimised processes and networks, it has many applications in computer science.
    Here, simulations of evolution using evolutionary algorithms and artificial life started with the work of Nils Aall
    Barricelli in the 1960s, and was extended by Alex Fraser, who published a series of papers on simulation of artificial
    selection.[257] Artificial evolution became a widely recognised optimization method as a result of the work of Ingo
    Rechenberg in the 1960s and early 1970s, who used evolution strategies to solve complex engineering problems.[258]
    Genetic algorithms in particular became popular through the writing of John Holland.[259] As academic interest
    grew, dramatic increases in the power of computers allowed practical applications, including the automatic evolution
    of computer programs.[260] Evolutionary algorithms are now used to solve multi-dimensional problems more
    efficiently than software produced by human designers, and also to optimise the design of systems.[261]
    While various religions and denominations have reconciled their beliefs with
    evolution through concepts such as theistic evolution, there are creationists
    who believe that evolution is contradicted by the creation myths found in their
    respective religions and who raise various objections to evolution.[132] [264]
    [265]
          As had been demonstrated by responses to the publication of Vestiges of
    the Natural History of Creation in 1844, the most controversial aspect of            As evolution became widely accepted in
    evolutionary biology is the implication of human evolution that human mental         the 1870s, caricatures of Charles Darwin
    and moral faculties, which had been thought purely spiritual, are not distinctly     with an ape or monkey body symbolised
                                                                                                                 [262]
                                                                                                      evolution.
Evolution                                                                                                                                              34
    separated from those of other animals.[13] In some countries—notably the United States—these tensions between
    science and religion have fueled the current creation-evolution controversy, a religious conflict focusing on politics
    and public education.[266] While other scientific fields such as cosmology[267] and Earth science[268] also conflict
    with literal interpretations of many religious texts, evolutionary biology experiences significantly more opposition
    from religious literalists.
    The teaching of evolution in American secondary school biology classes was uncommon in most of the first half of
    the 20th century. The Scopes Trial decision of 1925 caused the subject to become very rare in American secondary
    biology textbooks for a generation, but it was gradually re-introduced about a generation later and legally protected
    with the 1968 Epperson v. Arkansas decision. Since then, the competing religious belief of creationism was legally
    disallowed in secondary school curricula in various decisions in the 1970s and 1980s, but it returned in the form of
    intelligent design, to be excluded once again in the 2005 Kitzmiller v. Dover Area School District case.[269]
    Another example somewhat associated with evolutionary theory that is now widely regarded as unwarranted is
    "Social Darwinism", a derogatory term associated with the 19th century Malthusian theory developed by Whig
    philosopher Herbert Spencer. It was later expanded by others into ideas about "survival of the fittest" in commerce
    and human societies as a whole, and led to claims that social inequality, sexism, racism, and imperialism were
    justified.[270] However, these ideas contradict Darwin's own views, and contemporary scientists and philosophers
    consider these ideas to be neither mandated by evolutionary theory nor supported by data.[271] [272] [273]
    See also
    • Current research in evolutionary biology
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    [265] Hameed, Salman (2008-12-12). "Science and Religion: Bracing for Islamic Creationism" (http:/ / helios. hampshire. edu/ ~sahCS/
       Hameed-Science-Creationism. pdf). Science 322 (5908): 1637–1638. doi:10.1126/science.1163672. PMID 19074331. . Retrieved 2009.
    [266] Spergel D. N.; Scott, EC; Okamoto, S (2006). "Science communication. Public acceptance of evolution". Science 313 (5788): 765–66.
       doi:10.1126/science.1126746. PMID 16902112.
    [267] Spergel, D. N.; Verde, L.; Peiris, H. V.; Komatsu, E.; Nolta, M. R.; Bennett, C. L.; Halpern, M.; Hinshaw, G. et al. (2003). "First-Year
       Wilkinson Microwave Anisotropy Probe (WMAP) Observations: Determination of Cosmological Parameters". The Astrophysical Journal
       Supplement Series 148: 175–94. doi:10.1086/377226.
    [268] Wilde SA, Valley JW, Peck WH, Graham CM (2001). "Evidence from detrital zircons for the existence of continental crust and oceans on
       the Earth 4.4 Gyr ago". Nature 409 (6817): 175–78. doi:10.1038/35051550. PMID 11196637.
    [269] Understanding Creationism after Kitzmiller (http:/ / www. bioone. org/ doi/ full/ 10. 1641/ B570313) 2007
    [270] On the history of eugenics and evolution, see Kevles, D (1998). In the Name of Eugenics: Genetics and the Uses of Human Heredity.
       Harvard University Press. ISBN 978-0674445574.
    [271] Darwin strongly disagreed with attempts by Herbert Spencer and others to extrapolate evolutionary ideas to all possible subjects; see
       Midgley, M (2004). The Myths we Live By. Routledge. p. 62. ISBN 978-0415340779.
    [272] Allhoff F (2003). "Evolutionary ethics from Darwin to Moore". History and philosophy of the life sciences 25 (1): 51–79.
       doi:10.1080/03919710312331272945. PMID 15293515.
    [273] Gowaty, Patricia Adair (1997). Feminism and evolutionary biology: boundaries, intersections, and frontiers. London: Chapman & Hall.
       ISBN 0-412-07361-7.
Evolution                                                                                                                45
    Further reading
    Introductory reading
    • Carroll, S. (2005). Endless Forms Most Beautiful. New York: W.W. Norton. ISBN 0-393-06016-0.
    • Charlesworth, C.B. and Charlesworth, D. (2003). Evolution. Oxfordshire: Oxford University Press.
      ISBN 0-192-80251-8.
    • Dawkins, R. (2006). The Selfish Gene: 30th Anniversary Edition. Oxford University Press. ISBN 0199291152.
    • Gould, S.J. (1989). Wonderful Life: The Burgess Shale and the Nature of History. New York: W.W. Norton.
      ISBN 0-393-30700-X.
    • Jones, S. (2001). Almost Like a Whale: The Origin of Species Updated. (American title: Darwin's Ghost). New
      York: Ballantine Books. ISBN 0-345-42277-5.
    • Mader, Sylvia S. (2007). Biology. Murray P. Pendarvis (9th ed.). McGraw Hill. ISBN 9780073258393.
    • Maynard Smith, J. (1993). The Theory of Evolution: Canto Edition. Cambridge University Press.
      ISBN 0-521-45128-0.
    • Pallen, M.J. (2009). The Rough Guide to Evolution. Rough Guides. ISBN 978-1-85828-946-5.
    • Smith, C.B. and Sullivan, C. (2007). The Top 10 Myths about Evolution. Prometheus Books.
      ISBN 978-1-59102-479-8.
    History of evolutionary thought
    • Darwin, Charles (1859). On the Origin of Species (http://darwin-online.org.uk/content/
      frameset?itemID=F373&viewtype=text&pageseq=1) (1st ed.). London: John Murray. ISBN 0801413192.
    • Larson, E.J. (2004). Evolution: The Remarkable History of a Scientific Theory. New York: Modern Library.
      ISBN 0-679-64288-9.
    • Zimmer, C. (2001). Evolution: The Triumph of an Idea. London: HarperCollins. ISBN 0-060-19906-7.
    Advanced reading
    • Barton, N.H., Briggs, D.E.G., Eisen, J.A., Goldstein, D.B. and Patel, N.H. (2007). Evolution. Cold Spring Harbor
      Laboratory Press. ISBN 0-879-69684-2.
    • Coyne, J.A. and Orr, H.A. (2004). Speciation. Sunderland: Sinauer Associates. ISBN 0-878-93089-2.
    • Futuyma, D.J. (2005). Evolution. Sunderland: Sinauer Associates. ISBN 0-878-93187-2.
    • Gould, S.J. (2002). The Structure of Evolutionary Theory. Cambridge: Belknap Press (Harvard University Press).
      ISBN 0-674-00613-5.
    • Maynard Smith, J. and Szathmáry, E. (1997). The Major Transitions in Evolution. Oxfordshire: Oxford
      University Press. ISBN 0-198-50294-X.
    • Mayr, E. (2001). What Evolution Is. New York: Basic Books. ISBN 0-465-04426-3.
    • Olson, Wendy; Hall, Brian Keith (2003). Keywords and concepts in evolutionary developmental biology.
      Cambridge: Harvard University Press. ISBN 0-674-02240-8.
Evolution                                                                                                           46
    External links
    General information
    • Evolution (http://www.bbc.co.uk/programmes/p00545gl) on In Our Time at the BBC. ( listen now (http://
      www.bbc.co.uk/iplayer/console/p00545gl/In_Our_Time_Evolution))
    • Everything you wanted to know about evolution by New Scientist (http://www.newscientist.com/topic/
      evolution)
    • Howstuffworks.com — How Evolution Works (http://science.howstuffworks.com/evolution/evolution.htm)
    • National Academies Evolution Resources (http://nationalacademies.org/evolution/)
    • Synthetic Theory Of Evolution: An Introduction to Modern Evolutionary Concepts and Theories (http://anthro.
      palomar.edu/synthetic/)
    • Understanding Evolution from University of California, Berkeley (http://evolution.berkeley.edu/)
    • Evolution of Evolution - 150 Years of Darwin's "On the Origin of Species" (http://www.nsf.gov/news/
      special_reports/darwin/textonly/index.jsp)
    History of evolutionary thought
    • The Complete Work of Charles Darwin Online (http://darwin-online.org.uk/)
    • Understanding Evolution: History, Theory, Evidence, and Implications (http://www.rationalrevolution.net/
      articles/understanding_evolution.htm)
    On-line lectures
    • What Genomes Can Tell Us About the Past (http://ascb.org/ibioseminars/brenner/brenner1.cfm) – lecture by
      Sydney Brenner
    • The Origin of Vertebrates (http://ascb.org/ibioseminars/kirschner/kirschner1.cfm) – lecture by Marc
      Kirschner
    • The Making of the Fittest (http://www.molbio.wisc.edu/carroll/Fittest.html) – lecture by Sean B. Carroll
Evolution as theory and fact                                                                                                       47
     Evolution
     Evolution is usually defined simply as changes in trait or gene frequency in a population of organisms from one
     generation to the next. However, "evolution" is often used to include the following additional claims:
     1. Differences in trait composition between isolated populations over many generations may result in the origin of
        new species.
     2. All living organisms alive today have descended from a common ancestor (or ancestral gene pool).
     According to Douglas Futuyma:
            Biological evolution may be slight or substantial; it embraces everything from slight changes in the proportion
            of different alleles within a population (such as those determining blood types) to the successive alterations
            that led from the earliest proto-organism to snails, bees, giraffes, and dandelions.[11]
     The term "evolution", especially when referred to as a "theory", is also used more broadly to incorporate processes
     such as natural selection and genetic drift.
     Fact
     Fact is often used by scientists to refer to experimental or empirical data or objective verifiable observations.[12] [13]
     [14] [15]
               "Fact" is also used in a wider sense to mean any theory for which there is overwhelming evidence.
            A fact is a hypothesis that is so firmly supported by evidence that we assume it is true, and act as if it were
            true. —Douglas Futyuma[16]
     Evolution is a fact in the sense that it is overwhelmingly validated by the evidence. Frequently, evolution is said to
     be a fact in the same way as the Earth revolving around the Sun is a fact.[16] [17] The following quotation from H. J.
     Muller, "One Hundred Years Without Darwin Are Enough" explains the point.
            There is no sharp line between speculation, hypothesis, theory, principle, and fact, but only a difference along
            a sliding scale, in the degree of probability of the idea. When we say a thing is a fact, then, we only mean that
            its probability is an extremely high one: so high that we are not bothered by doubt about it and are ready to
            act accordingly. Now in this use of the term fact, the only proper one, evolution is a fact.[3]
Evolution as theory and fact                                                                                                      48
     Theory
     A scientific theory is a well-supported body of interconnected statements that explains observations and can be used
     to make testable predictions. Scientific theories describe the coherent framework into which observable data fit. The
     "theory of evolution" is the framework that best explains observed changes of species over time and best predicts the
     new observations that continue to be made in evolutionary biology and related sciences.
     The scientific definition of the word "theory" is different from the colloquial sense of the word. Colloquially,
     "theory" can mean a conjecture, an opinion, or a speculation that does not have to be based on facts or make testable
     predictions. In science, the meaning of theory is more rigorous: a theory must be based on observed facts and make
     testable predictions. In science, a current theory is a theory that has no equally acceptable or more acceptable
     alternative theory.
       fact."[25]
     • Neil Campbell wrote in his 1990 biology textbook, "Today, nearly all biologists acknowledge that evolution is a
       fact. The term theory is no longer appropriate except when referring to the various models that attempt to explain
       how life evolves... it is important to understand that the current questions about how life evolves in no way implies
       any disagreement over the fact of evolution."[4]
     Predictive power
     A central tenet in science is that a scientific theory is supposed to have predictive power, and verification of
     predictions are seen as an important and necessary support for the theory. The theory of evolution has provided such
     predictions. Four examples are:
     • Genetic information must be transmitted in a molecular way that will be almost exact but permit slight changes.
       Since this prediction was made, biologists have discovered the existence of DNA, which has a mutation rate of
       roughly 10−9 per nucleotide per cell division; this provides just such a mechanism.[26]
     • Some DNA sequences are shared by very different organisms. It has been predicted by the theory of evolution
       that the differences in such DNA sequences between two organisms should roughly resemble both the biological
       difference between them according to their anatomy and the time that had passed since these two organisms have
       separated in the course of evolution, as seen in fossil evidence. The rate of accumulating such changes should be
       low for some sequences, namely those that code for critical RNA or proteins, and high for others that code for less
       critical RNA or proteins; but for every specific sequence, the rate of change should be roughly constant over time.
       These results have been experimentally confirmed. Two examples are DNA sequences coding for rRNA, which is
       highly conserved, and DNA sequences coding for fibrinopeptides (amino acid chains that are discarded during the
       formation of fibrin), which are highly non-conserved.[26]
     • Prior to 2004, paleontologists had found fossils of amphibians with necks, ears, and four legs, in rock no older
       than 365 million years old. In rocks more than 385 million years old they could only find fish, without these
       amphibian characteristics. Evolutionary theory predicted that since amphibians evolved from fish, an intermediate
       form should be found in rock dated between 365 and 385 million years ago. Such an intermediate form should
       have many fish-like characteristics, conserved from 385 million years ago or more, but also have many amphibian
       characteristics as well. In 2004, an expedition to islands in the Canadian arctic searching specifically for this
       fossil form in rocks that were 375 million years old discovered fossils of Tiktaalik.[27]
     • Evolutionary theory predicts that novel inventions can arise, while creationists predict that new "information"
       cannot arise, and that the Second Law of Thermodynamics only allows for "information" to be lost.[28] In an
       ongoing experiment, Richard Lenski observed that E. coli evolved the ability to metabolize citrate, which
       constitutes a novel invention, and an increase in the information of the DNA of the E. coli.[29]
     See also
     •   Epistemology
     •   Evidence of common descent
     •   Evolution is just a theory, not a fact (in objections to evolution)
     •   Misconceptions about evolution (in List of misconceptions)
     •   Theory vs. Fact (in Creation-evolution controversy)
     Notes
     [1] Moran, Laurence (1993-01-22). "Evolution is a Fact and a Theory" (http:/ / www. talkorigins. org/ faqs/ evolution-fact. html). Talk.origins. .
         Retrieved 2007-10-18.
     [2] Gould, Stephen Jay (1981-05-01). "Evolution as Fact and Theory" (http:/ / www. stephenjaygould. org/ library/ gould_fact-and-theory. html).
         Discover 2 (5): 34–37. . Reprinted in:
         • Vetter, Herbert F. (ed.) (1982). Speak Out Against The New Right. Beacon Press. ISBN 0807004863.
         • Gould, Stephen Jay (1994-04-01). Hen's Teeth and Horse's Toes. New York: Norton. ISBN 0393017168.
     [3] Muller, H. J. (1959). "One hundred years without Darwin are enough" (http:/ / www. skepticfiles. org/ evolut/ 100pcnts. htm). School Science
         and Mathematics 59: 304–305. doi:10.1111/j.1949-8594.1959.tb08235.x. . Reprinted in:
         •   Zetterberg, Peter (ed.) (1983-05-01). Evolution Versus Creationism: The Public Education Controversy. Phoenix AZ: ORYX Press.
             ISBN 0897740610.
     [4] Campbell, Neil A.; Reece, Jane B. (2002-02-05). Biology 6th ed.. Benjamin Cummings. p. 1175. ISBN 0805366245.
     [5] Dobzhansky, Theodosius (1973-03-01). "Nothing in biology makes sense except in the light of evolution" (http:/ / people. delphiforums. com/
         lordorman/ light. htm). American Biology Teacher 35. .
     Reprinted in:
         •    Zetterberg, Peter (ed.) (1983-05-01). Evolution Versus Creationism: The Public Education Controversy. Phoenix AZ: ORYX Press.
              ISBN 0897740610.
     [6] Lenski, Richard E. (2000). "Evolution: Fact and Theory" (http:/ / www. actionbioscience. org/ evolution/ lenski. html). American Institute of
         Biological Sciences. . Retrieved 2007-10-18.
     [7] Mayr, Ernst (1988). Toward a New Philosophy of Biology: Observations of an Evolutionist. Cambridge: Harvard University Press.
         ISBN 0-674-89666-1.
     [8] Cavalier-Smith T (2006). "Cell evolution and Earth history: stasis and revolution" (http:/ / www. pubmedcentral. nih. gov/ articlerender.
         fcgi?tool=pmcentrez& artid=1578732). Philos Trans R Soc Lond B Biol Sci 361 (1470): 969–1006. doi:10.1098/rstb.2006.1842.
         PMID 16754610. PMC 1578732.
     [9] Is "Evolution" a "Theory" or "Fact" or Is This Just a Trivial Game of Semantics? (http:/ / www. discovery. org/ a/ 6401) by Casey Luskin
     [10] Committee for Skeptical Inquiry — Evolution & Creationism: Terminology in Conflict (http:/ / www. csicop. org/ specialarticles/ show/
         evolution_amp_creationism_terminology_in_conflict/ ) by Richard Joltes
     [11] Futuyma, Douglas J. (1997). , Evolutionary Biology, 3rd ed.. Sinauer Associates. p. 751. ISBN 0878931899.
     [12] Wordnet entry for phrase "scientific fact" (http:/ / wordnet. princeton. edu/ perl/ webwn?s=scientific fact)
     [13] United States National Park Service Glossary (http:/ / www2. nature. nps. gov/ views/ System/ Glossary. htm#F)
     [14] Webster's New Millennium Dictionary of English, Preview Edition (v 0.9.6), Copyright © 2003–2006 Lexico Publishing Group, LLC (http:/
         / dictionary. reference. com/ search?q=scientific+ fact& r=66)
     [15] Webster's Encyclopedic Unabridged Dictionary of the English Language (1996) gives a third meaning of the word "fact" as (3) A truth
         known by actual experience or observation; something known to be true: 'Scientists gather facts about plant growth.'
     [16] Hypotheses, Facts, and the Nature of Science, —Douglas Futyuma (http:/ / www. stephenjaygould. org/ library/ futuyma_theory. html)
     [17] Guardian article by Richard Dawkins, Jerry Coyne (http:/ / www. guardian. co. uk/ science/ 2005/ sep/ 01/ schools. research)
     [18] Science and Creationism: A View from the National Academy of Sciences, Second Edition (1999), National Academy of Sciences (NAS),
         National Academy Press, Washington DC, 2006. (http:/ / books. nap. edu/ openbook. php?record_id=6024& page=28)
     [19] Wilkins, JS (1997). "Evolution and Philosophy:Is Evolution Science, and What Does 'Science' Mean?" (http:/ / www. talkorigins. org/ faqs/
         evolphil/ falsify. html). The TalkOrigins Archive (http:/ / www. talkorigins. org). . Retrieved 2009-08-17.
     [20] Gregory, T. Ryan (2007). "Evolution as Fact, Theory, and Path". Evolution: Education and Outreach 1 (1): 46–52.
         doi:10.1007/s12052-007-0001-z.
     [21] Dobzhansky T, Pavlovsky O (1971). "Experimentally created incipient species of Drosophila". Nature 230 (5292): 289–92.
         doi:10.1038/230289a0. PMID 5549403.
     [22] Robinson, B.A. (2005-08-30). "Is the theory of evolution merely a "theory"?" (http:/ / www. religioustolerance. org/ ev_stat. htm). .
         Retrieved 2007-10-18.
     [23] "Miller, Kenneth S. (2007). Finding Darwin's God: A Scientist's Search for Common Ground Between God and Evolution (P.S.). New York,
         N.Y: Harper Perennial. ISBN 0061233501.
Evolution as theory and fact                                                                                                                             52
     [24] Lewontin, R. C. (1981). "Evolution/Creation Debate: a time for truth". Bioscience 31: 559. Reprinted in:
        •    Zetterberg, Peter, ed. (1983-05-01). Evolution Versus Creationism: the public education controversy. Phoenix AZ: Oryx Press.
             ISBN 0897740610.
     [25] Natural History article : The Illusion of Design (http:/ / www. naturalhistorymag. com/ features/ 101500/ the-illusion-of-design) by Richard
         Dawkins
     [26] Bruce Alberts; Alexander Johnson; Julian Lewis; Martin Raff; Keith Roberts; Peter Walter (March, 2002). Molecular Biology of the Cell
         (4th ed.). Routledge. ISBN 0-8153-3218-1.
     [27] "Shubin, Neil. (2008). Your Inner Fish. Pantheon. ISBN 9780375424472.
     [28] TalkOrigins.org (http:/ / www. talkorigins. org/ faqs/ thermo/ probability. html)
     [29] NS:bacteria make major evolutionary shift in the lab (http:/ / www. newscientist. com/ channel/ life/
         dn14094-bacteria-make-major-evolutionary-shift-in-the-lab. htm)
     References
     • J.P. Franck, et al., "Evolution of a satellite DNA family in tilapia." Annual Meeting Canadian Federation of
       Biological Societies. Halifax, (1990).
     • M. Losseau-Hoebeke, "The biology of four haplochromine species of Lake Kivu (Zaire) with evolutionary
       implications." Thesis, Dept. Ichthyology, Rhodes University, Grahamstown, (1992).
     External links
     • Not Just a Theory (http://www.notjustatheory.com) Discredits the assertion that evolution is "just a theory",
       with an explanation of the meaning of the word 'theory' in a scientific context.
     • Talk Origins (http://www.talkorigins.org/indexcc/CB/CB910.html) Response to the claim that no examples
       of speciation have been observed.
     • Glenn Branch; Louise S. Mead (2008-06-06). "“Theory” in Theory and Practice" (http://www.springerlink.com/
       content/fr258627q2x3t378/fulltext.pdf) (pdf). Evo Edu Outreach (2008) 1:287–289. Springer Science +
       Business Media. Retrieved 2008-07-21.
Evolutionary history of life                                                                                                   53
                                                           Hadean
                                                           Archean
                                                           Protero
                                                            -zoic
                                                           Phanero
                                                            -zoic
                                                              Eo
                                                            Paleo
                                                            Meso
                                                             Neo
                                                            Paleo
                                                            Meso
                                                             Neo
                                                            Paleo
                                                            Meso
                                                            Ceno
                                                           Scale:
                                                      Millions of years
     The oldest meteorite fragments found on Earth are about 4540 [32] million years old, this, coupled primarily with the
     dating of ancient lead deposits, has put the estimated age of Earth at around that time.[33] About 40 million years
     later a planetoid struck the Earth, throwing into orbit the material that formed the Moon.[34]
Evolutionary history of life                                                                                                                   55
     Until recently the oldest rocks found on Earth were about 3800 [35] million years old,[33] leading scientists to believe
     for decades that Earth's surface had been molten until then. Accordingly, they named this part of Earth's history the
     Hadean eon, whose name means "hellish".[36] However analysis of zircons formed 4400 to 4000 [37] million years
     ago indicates that Earth's crust solidified about 100 million years after the planet's formation and that the planet
     quickly acquired oceans and an atmosphere, which may have been capable of supporting life.[38]
     Evidence from the Moon indicates that from 4000 to 3800 [39] million years ago it suffered a Late Heavy
     Bombardment by debris that was left over from the formation of the Solar system, and the Earth should have
     experienced an even heavier bombardment due to its stronger gravity.[36] [40] While there is no direct evidence of
     conditions on Earth 4000 to 3800 [39] million years ago, there is no reason to think that the Earth was not also
     affected by this late heavy bombardment.[41] This event may well have stripped away any previous atmosphere and
     oceans; in this case gases and water from comet impacts may have contributed to their replacement, although
     volcanic outgassing on Earth would have contributed at least half.[42]
     Even the simplest members of the three modern domains of life use DNA to record their "recipes" and a complex
     array of RNA and protein molecules to "read" these instructions and use them for growth, maintenance and
     self-replication. This system is far too complex to have emerged directly from non-living materials.[53] The
     discovery that some RNA molecules can catalyze both their own replication and the construction of proteins led to
     the hypothesis of earlier life-forms based entirely on RNA.[65] These ribozymes could have formed an RNA world in
     which there were individuals but no species, as mutations and horizontal gene transfers would have meant that the
     offspring in each generation were quite likely to have different genomes from those that their parents started with.[66]
     RNA would later have been replaced by DNA, which is more stable and therefore can build longer genomes,
     expanding the range of capabilities a single organism can have.[66] [67] [68] Ribozymes remain as the main
     components of ribosomes, modern cells' "protein factories".[69]
     Although short self-replicating RNA molecules have been artificially produced in laboratories,[70] doubts have been
     raised about where natural non-biological synthesis of RNA is possible.[71] The earliest "ribozymes" may have been
     formed of simpler nucleic acids such as PNA, TNA or GNA, which would have been replaced later by RNA.[72] [73]
     In 2003 it was proposed that porous metal sulfide precipitates would assist RNA synthesis at about 100 °C (212 °F)
     and ocean-bottom pressures near hydrothermal vents. In this hypothesis lipid membranes would be the last major cell
Evolutionary history of life                                                                                                       57
components to appear and until then the proto-cells would be confined to the pores.[74]
     It has been suggested that double-walled "bubbles" of lipids like those that form the external membranes of cells may
     have been an essential first step.[76] Experiments that simulated the conditions of the early Earth have reported the
     formation of lipids, and these can spontaneously form liposomes, double-walled "bubbles", and then reproduce
     themselves. Although they are not intrinsically information-carriers as nucleic acids are, they would be subject to
     natural selection for longevity and reproduction. Nucleic acids such as RNA might then have formed more easily
     within the liposomes than they would have outside.[77]
     In modern underwater mats the top layer often consists of photosynthesizing cyanobacteria which create an
     oxygen-rich environment, while the bottom layer is oxygen-free and often dominated by hydrogen sulfide emitted by
     the organisms living there.[83] It is estimated that the appearance of oxygenic photosynthesis by bacteria in mats
     increased biological productivity by a factor of between 100 and 1,000. The reducing agent used by oxygenic
     photosynthesis is water, which is much more plentiful than the geologically-produced reducing agents required by
     the earlier non-oxygenic photosynthesis.[86] From this point onwards life itself produced significantly more of the
     resources it needed than did geochemical processes.[87] Oxygen is toxic to organisms that are not adapted to it, but
     greatly increases the metabolic efficiency of oxygen-adapted organisms.[88] [89] Oxygen became a significant
     component of Earth's atmosphere about 2400 [4] million years ago.[90] Although eukaryotes may have been present
     much earlier,[91] [92] the oxygenation of the atmosphere was a prerequisite for the evolution of the most complex
     eukaryotic cells, from which all multicellular organisms are built.[93] The boundary between oxygen-rich and
     oxygen-free layers in microbial mats would have moved upwards when photosynthesis shut down overnight, and
     then downwards as it resumed on the next day. This would have created selection pressure for organisms in this
     intermediate zone to acquire the ability to tolerate and then to use oxygen, possibly via endosymbiosis, where one
     organism lives inside another and both of them benefit from their association.[3]
     Cyanobacteria have the most complete biochemical "toolkits" of all the mat-forming organisms. Hence they are the
     most self-sufficient of the mat organisms and were well-adapted to strike out on their own both as floating mats and
     as the first of the phytoplankton, providing the basis of most marine food chains.[3]
Evolutionary history of life                                                                                                   59
Diversification of eukaryotes
Apusozoa
Rhizaria
Excavata
Eukaryotes
Amoebozoa
                                                                 Metazoa (Animals)
                                     Unikonta
                                                Opisthokonta     Choanozoa
Eumycota (Fungi)
     Multicellularity
     The simplest definitions of "multicellular", for example "having
     multiple cells", could include colonial cyanobacteria like Nostoc.
     Even a professional biologist's definition such as "having the same
     genome but different types of cell" would still include some
     genera of the green alga Volvox, which have cells that specialize
     in reproduction.[112] Multicellularity evolved independently in
     organisms as diverse as sponges and other animals, fungi, plants,          A slime mold solves a maze. The mold (yellow)
     brown algae, cyanobacteria, slime moulds and myxobacteria.[8]                explored and filled the maze (left). When the
     [113]                                                                    researchers placed sugar (red) at two separate points,
           For the sake of brevity this article focuses on the organisms
                                                                              the mold concentrated most of its mass there and left
     that show the greatest specialization of cells and variety of cell
                                                                               only the most efficient connection between the two
     types, although this approach to the evolution of complexity could                                        [111]
                                                                                               points (right).
     be regarded as "rather anthropocentric".[114]
     The initial advantages of multicellularity may have included: increased resistance to predators, many of which
     attacked by engulfing; the ability to resist currents by attaching to a firm surface; the ability to reach upwards to
     filter-feed or to obtain sunlight for photosynthesis;[115] the ability to create an internal environment that gives
     protection against the external one;[114] and even the opportunity for a group of cells to behave "intelligently" by
     sharing information.[111] These features would also have provided opportunities for other organisms to diversify, by
     creating more varied environments than flat microbial mats could.[115]
     Multicellularity with differentiated cells is beneficial to the organism as a whole but disadvantageous from the point
     of view of individual cells, most of which lose the opportunity to reproduce themselves. In an asexual multicellular
     organism, rogue cells which retain the ability to reproduce may take over and reduce the organism to a mass of
     undifferentiated cells. Sexual reproduction eliminates such rogue cells from the next generation and therefore
     appears to be a prerequisite for complex multicellularity.[115]
     The available evidence indicates that eukaryotes evolved much earlier but remained inconspicuous until a rapid
     diversification around 1000 [116] million years ago. The only respect in which eukaryotes clearly surpass bacteria and
     archaea is their capacity for variety of forms, and sexual reproduction enabled eukaryotes to exploit that advantage
     by producing organisms with multiple cells that differed in form and function.[115]
     The Red Queen Hypothesis suggests that sexual reproduction provides protection against parasites, because it is
     easier for parasites to evolve means of overcoming the defenses of genetically identical clones than those of sexual
     species that present moving targets, and there is some experimental evidence for this. However there is still doubt
     about whether it would explain the survival of sexual species if multiple similar clone species were present, as one of
     the clones may survive the attacks of parasites for long enough to out-breed the sexual species.[117]
     The Mutation Deterministic Hypothesis assumes that each organism has more than one harmful mutation and the
     combined effects of these mutations are more harmful than the sum of the harm done by each individual mutation. If
     so, sexual recombination of genes will reduce the harm that bad mutations do to offspring and at the same time
     eliminate some bad mutations from the gene pool by isolating them in individuals that perish quickly because they
     have an above-average number of bad mutations. However the evidence suggests that the MDH's assumptions are
     shaky, because many species have on average less than one harmful mutation per individual and no species that has
     been investigated shows evidence of synergy between harmful mutations.[117]
     The random nature of recombination causes the relative abundance of
     alternative traits to vary from one generation to another. This genetic
     drift is insufficient on its own to make sexual reproduction
     advantageous, but a combination of genetic drift and natural selection
     may be sufficient. When chance produces combinations of good traits,
     natural selection gives a large advantage to lineages in which these
     traits become genetically linked. On the other hand the benefits of good
     traits are neutralized if they appear along with bad traits. Sexual
     recombination gives good traits the opportunities to become linked
     with other good traits, and mathematical models suggest this may be
     more than enough to offset the disadvantages of sexual
                                                                                   Horodyskia apparently re-arranged itself into
     reproduction.[121] Other combinations of hypotheses that are                  fewer but larger main masses as the sediment
     inadequate on their own are also being examined.[117]                                grew deeper round its base.
                                                                                                                      [8]
     The Francevillian Group Fossil, dated to 2100 [104] million years ago, is the earliest known fossil organism that is
     clearly multicellular.[] They may have had differentiated cells.[128] Another early multicellular fossil,
     Qingshania,[129] dated to 1700 [9] million years ago, appears to consist of virtually identical cells. The red alga called
     Bangiomorpha, dated at 1200 [13] million years ago, is the earliest known organism which certainly has
     differentiated, specialized cells, and is also the oldest known sexually-reproducing organism.[115] The 1430 [109]
     million-year-old fossils interpreted as fungi appear to have been multicellular with differentiated cells.[110] The
     "string of beads" organism Horodyskia, found in rocks dated from 1500 [106] million years ago to 900.0 [130] million
     years ago, may have been an early metazoan;[8] however it has also been interpreted as a colonial foraminiferan.[127]
Emergence of animals
Acoelomorpha
Placozoa
Choanoflagellata
Mesomycetozoea
     The Ediacara biota, which flourished for the last 40 million years before the start of the Cambrian,[138] were the first
     animals more than a very few centimeters long. Many were flat and had a "quilted" appearance, and seemed so
     strange that there was a proposal to classify them as a separate kingdom, Vendozoa.[139] Others, however, been
     interpreted as early molluscs (Kimberella[140] [141] ), echinoderms (Arkarua[142] ), and arthropods (Spriggina,[143]
     Parvancorina[144] ). There is still debate about the classification of these specimens, mainly because the diagnostic
     features which allow taxonomists to classify more recent organisms, such as similarities to living organisms, are
     generally absent in the Ediacarans. However there seems little doubt that Kimberella was at least a triploblastic
     bilaterian animal, in other words significantly more complex than cnidarians.[145]
     The small shelly fauna are a very mixed collection of fossils found between the Late Ediacaran and Mid Cambrian
     periods. The earliest, Cloudina, shows signs of successful defense against predation and may indicate the start of an
     evolutionary arms race. Some tiny Early Cambrian shells almost certainly belonged to molluscs, while the owners of
     some "armor plates", Halkieria and Microdictyon, were eventually identified when more complete specimens were
     found in Cambrian lagerstätten that preserved soft-bodied animals.[146]
                                                In the 1970s there was already a debate about whether the emergence of the
                                                modern phyla was "explosive" or gradual but hidden by the shortage of
                                                Pre-Cambrian animal fossils.[146] A re-analysis of fossils from the Burgess
                                                Shale lagerstätte increased interest in the issue when it revealed animals, such
                                                as Opabinia, which did not fit into any known phylum. At the time these were
                                                interpreted as evidence that the modern phyla had evolved very rapidly in the
                                                "Cambrian explosion" and that the Burgess Shale's "weird wonders" showed
           Opabinia made the largest single
                                                that the Early Cambrian was a uniquely experimental period of animal
         contribution to modern interest in the evolution.[148] Later discoveries of similar animals and the development of
                                   [147]
               Cambrian explosion.              new theoretical approaches led to the conclusion that many of the "weird
                                                wonders" were evolutionary "aunts" or "cousins" of modern groups[149] – for
     example that Opabinia was a member of the lobopods, a group which includes the ancestors of the arthropods, and
     that it may have been closely related to the modern tardigrades.[150] Nevertheless there is still much debate about
     whether the Cambrian explosion was really explosive and, if so, how and why it happened and why it appears unique
     in the history of animals.[151]
     Colonization of land
     Adaptation to life on land is a major challenge: all land organisms need to avoid drying-out and all those above
     microscopic size have to resist gravity; respiration and gas exchange systems have to change; reproductive systems
     cannot depend on water to carry eggs and sperm towards each other.[157] [158] Although the earliest good evidence of
     land plants and animals dates back to the Ordovician period (488 to 444 [159] million years ago), modern land
     ecosystems only appeared in the late Devonian, about 385 to 359 [160] million years ago.[161]
Evolutionary history of life                                                                                                         64
     Evolution of soil
     Before the colonization of land, soil, a combination of mineral particles and decomposed organic matter, did not
     exist. Land surfaces would have been either bare rock or unstable sand produced by weathering. Water and any
     nutrients in it would have drained away very quickly.[161]
     Films of cyanobacteria, which are not plants but use the same
     photosynthesis mechanisms, have been found in modern deserts,
     and only in areas that are unsuitable for vascular plants. This
     suggests that microbial mats may have been the first organisms to
     colonize dry land, possibly in the Precambrian. Mat-forming
     cyanobacteria could have gradually evolved resistance to
     desiccation as they spread from the seas to tidal zones and then to
     land.[161] Lichens, which are symbiotic combinations of a fungus
     (almost always an ascomycete) and one or more photosynthesizers                    Lichens growing on concrete
     (green algae or cyanobacteria),[162] are also important colonizers
     of lifeless environments,[161] and their ability to break down rocks contributes to soil formation in situations where
     plants cannot survive.[162] The earliest known ascomycete fossils date from 423 to 419 [163] million years ago in the
     Silurian.[161]
     Soil formation would have been very slow until the appearance of burrowing animals, which mix the mineral and
     organic components of soil and whose feces are a major source of the organic components.[161] Burrows have been
     found in Ordovician sediments, and are attributed to annelids ("worms") or arthropods.[161] [164]
Land vertebrates
Osteolepiformes ("fish")
Panderichthyidae
Obruchevichthidae
Acanthostega
Ichthyostega
"Fish" Tulerpeton
Early amphibians
Anthracosauria
Amniotes
     accepted as early relatives of the amniotes, whose water-proof skins and eggs enable them to live and breed far from
     water.[183]
Extinct pelycosaurs
                                                                                                Extinct therapsids
                                  Synapsids
                                               Pelycosaurs
                                                               Therapsids                         Extinct mammaliformes
                                                                            Mammaliformes
                                                                                                  Mammals
                                                                                                   [188]
                                               Anapsids; whether turtles belong here is debated
Araeoscelidia (extinct)
Extinct archosaurs
Crocodilians
Pterosaurs (extinct)
Sauropsids
                                                Diapsids
                                                                                                           Extinct
                                                              Archosaurs                    Theropods      theropods
                                                                                                           Birds
                                                                             Dinosaurs
                                                                                                           Sauropods
                                                                                                           (extinct)
                                                                                           Ornithischians (extinct)
Evolutionary history of life                                                                                                       68
Flowering plants
                                                                                         Angiosperms
                                                                                         (flowering plants)
                                                   Gnetales
                                                   (gymnosperm)
                                                   Welwitschia                              Cycads
                                                   (gymnosperm)                             (gymnosperm)
                                Gymnosperms                                                 Bennettitales
                                                  Ephedra
                                                                       Gymnosperms
                                                  (gymnosperm)
                                                                                           Gingko
Bennettitales
                                                 Angiosperms                               Gnetales
                                                 (flowering plants)                        (gymnosperm)
                                                                                           Conifers
                                                                                           (gymnosperm)
                                                                                                    [217]
                                                                       Another possible family tree.
     The 250,000 to 400,000 species of flowering plants outnumber all other ground plants combined, and are the
     dominant vegetation in most terrestrial ecosystems. There is fossil evidence that flowering plants diversified rapidly
     in the Early Cretaceous, between 130 [28] million years ago and 90 [29] million years ago,[216] [217] and that their rise
     was associated with that of pollinating insects.[217] Among modern flowering plants Magnolias are thought to be
     close to the common ancestor of the group.[216] However paleontologists have not succeeded in identifying the
     earliest stages in the evolution of flowering plants.[216] [217]
     Social insects
     The social insects are remarkable because the great majority of individuals in each colony are sterile. This appears
     contrary to basic concepts of evolution such as natural selection and the selfish gene. In fact there are very few
     eusocial insect species: only 15 out of approximately 2,600 living families of insects contain eusocial species, and it
     seems that eusociality has evolved independently only 12 times among arthropods, although some eusocial lineages
     have diversified into several families. Nevertheless social insects have been spectacularly successful; for example
     although ants and termites account for only about 2% of known insect species, they form over 50% of the total mass
     of insects. Their ability to control a territory appears to be the foundation of their success.[218]
Evolutionary history of life                                                                                                       70
     Humans
     Modern humans evolved from a lineage of upright-walking apes that has been traced back over 6 [30] million years
     ago to Sahelanthropus.[224] The first known stone tools were made about 2.5 [225] million years ago, apparently by
     Australopithecus garhi, and were found near animal bones that bear scratches made by these tools.[226] The earliest
     hominines had chimp-sized brains, but there has been a fourfold increase in the last 3 million years; a statistical
     analysis suggests that hominine brain sizes depend almost completely on the date of the fossils, while the species to
     which they are assigned has only slight influence.[227] There is a long-running debate about whether modern humans
     evolved all over the world simultaneously from existing advanced hominines or are descendants of a single small
     population in Africa, which then migrated all over the world less than 200,000 years ago and replaced previous
     hominine species.[228] There is also debate about whether anatomically-modern humans had an intellectual, cultural
     and technological "Great Leap Forward" under 100,000 years ago and, if so, whether this was due to neurological
     changes that are not visible in fossils.[229]
Evolutionary history of life                                                                                                                71
Mass extinctions
     K–T
     Tr–J
     P–Tr
     Late D
     O–S
     Millions of years ago
     Apparent extinction intensity, i.e. the fraction of genera going extinct at any given time, as reconstructed from the fossil record.
     (Graph not meant to include recent epoch of Holocene extinction event)
     Life on earth has suffered occasional mass extinctions at least since 542 [230] million years ago. Although they are
     disasters at the time, mass extinctions have sometimes accelerated the evolution of life on earth. When dominance of
     particular ecological niches passes from one group of organisms to another, it is rarely because the new dominant
     group is "superior" to the old and usually because an extinction event eliminates the old dominant group and makes
     way for the new one.[231] [232]
     The fossil record appears to show that the gaps between mass extinctions are becoming longer and the average and
     background rates of extinction are decreasing. Both of these phenomena could be explained in one or more
     ways:[233]
     • The oceans may have become more hospitable to life over the last 500 million years and less vulnerable to mass
       extinctions: dissolved oxygen became more widespread and penetrated to greater depths; the development of life
       on land reduced the run-off of nutrients and hence the risk of eutrophication and anoxic events; and marine
       ecosystems became more diversified so that food chains were less likely to be disrupted.[234] [235]
     • Reasonably complete fossils are very rare, most extinct organisms are represented only by partial fossils, and
       complete fossils are rarest in the oldest rocks. So paleontologists have mistakenly assigned parts of the same
       organism to different genera which were often defined solely to accommodate these finds – the story of
       Anomalocaris is an example of this. The risk of this mistake is higher for older fossils because these are often
       unlike parts of any living organism. Many of the "superfluous" genera are represented by fragments which are not
       found again and the "superfluous" genera appear to become extinct very quickly.[233]
Evolutionary history of life                                                                                                    72
     All genera
     "Well-defined" genera
     Trend line
     "Big Five" mass extinctions
     Other mass extinctions
     Million years ago
     Thousands of genera
     Phanerozoic biodiversity as shown by the fossil record
     The present
     Oxygenic photosynthesis accounts for virtually all of the production of organic matter from non-organic ingredients.
     Production is split about evenly between land and marine plants, and phytoplankton are the dominant marine
     producers.[240]
     The processes that drive evolution are still operating. Well-known examples include the changes in coloration of the
     peppered moth over the last 200 years and the more recent appearance of pathogens that are resistant to
     antibiotics.[241] [242] There is even evidence that humans are still evolving, and possibly at an accelerating rate over
     the last 40,000 years.[243]
Evolutionary history of life                                                                                                                             73
     See also
     •   Evolution
     •   Evolutionary history of plants
     •   Timeline of evolution
     •   History of evolutionary thought
     Footnotes
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     [2] Futuyma, Douglas J. (2005). Evolution. Sunderland, Massachusetts: Sinuer Associates, Inc. ISBN 0-87893-187-2.
     [3] Nisbet, E.G., and Fowler, C.M.R. (December 7, 1999). "Archaean metabolic evolution of microbial mats" (http:/ / www. pubmedcentral. nih.
         gov/ articlerender. fcgi?tool=pmcentrez& artid=1690475). Proceedings of the Royal Society: Biology 266 (1436): 2375.
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     [4] http:/ / toolserver. org/ ~verisimilus/ Timeline/ Timeline. php?Ma=2400
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        doi:10.1073/pnas.0707650104. PMID 18087044. PMC 2410101. . Retrieved 2008-09-11.
References
     Further reading
     • Cowen, R. (2004). History of Life (4th ed.). Blackwell Publishing Limited. ISBN 978-1405117562.
     • The Ancestor's Tale, A Pilgrimage to the Dawn of Life. Boston: Houghton Mifflin Company. 2004.
       ISBN 0-618-00583-8.
     • Richard Dawkins. (1990). The Selfish Gene. Oxford University Press. ISBN 0192860925.
     • Smith, John Maynard; Eörs Szathmáry (1997). The Major Transitions in Evolution. Oxfordshire: Oxford
       University Press. ISBN 0-198-50294-X.
     External links
     General information
     • General information on evolution- Fossil Museum nav. (http://www.fossilmuseum.net/Evolution.htm)
     • Understanding Evolution from University of California, Berkeley (http://evolution.berkeley.edu/)
     • National Academies Evolution Resources (http://nationalacademies.org/evolution/)
     • Evolution poster- PDF format "tree of life" (http://tellapallet.com/tree_of_life.htm)
     • Everything you wanted to know about evolution by New Scientist (http://www.newscientist.com/channel/life/
       evolution)
     • Howstuffworks.com — How Evolution Works (http://science.howstuffworks.com/evolution.htm/printable)
     • Synthetic Theory Of Evolution: An Introduction to Modern Evolutionary Concepts and Theories (http://anthro.
       palomar.edu/synthetic/)
     History of evolutionary thought
     • The Complete Work of Charles Darwin Online (http://darwin-online.org.uk)
     • Understanding Evolution: History, Theory, Evidence, and Implications (http://www.rationalrevolution.net/
       articles/understanding_evolution.htm)
Timeline of evolution                                                                                                         83
    Timeline of evolution
    This timeline of the evolution of life outlines the major events in the development of life on the planet Earth (See
    Organism). For a thorough explanatory context, see the history of Earth, and geologic time scale. The dates given in
    this article are estimates based on scientific evidence.
    In biology, evolution is the process by which populations of organisms acquire and pass on novel traits from
    generation to generation. Its occurrence over large stretches of time explains the origin of new species and ultimately
    the vast diversity of the biological world. Contemporary species are related to each other through common descent,
    products of evolution and speciation over billions of years.
    Basic timeline
    The basic timeline is a 4.5 billion year old Earth, with (very approximate) dates:
    •   3.8 billion years of simple cells (prokaryotes),
    •   3 billion years of photosynthesis,
    •   2 billion years of complex cells (eukaryotes),
    •   1 billion years of multicellular life,
    •   600 million years of simple animals,
    •   570 million years of arthropods (ancestors of insects, arachnids and crustaceans),
    •   550 million years of complex animals,
    •   500 million years of fish and proto-amphibians,
    •   475 million years of land plants,
    •   400 million years of insects and seeds,
    •   360 million years of amphibians,
    •   300 million years of reptiles,
    •   200 million years of mammals,
    •   150 million years of birds,
    •   130 million years of flowers,
    •   65 million years since the non-avian dinosaurs died out,
    •   2.5 million years since the appearance of the genus Homo,
    •   200,000 years since humans started looking like they do today,
    •   25,000 years since Neanderthals died out.
    Detailed timeline
           Ma, ("megaannum") means "million years ago". ka means "thousand years ago" and ya means "years ago"
    Hadean Eon
    3800 Ma and earlier.
Timeline of evolution                                                                                                                                    84
Date Event
4600 Ma The planet Earth forms from the accretion disc revolving around the young Sun.
            4500 Ma According to one plausible theory, the planet Earth and the planet Theia collide, sending a very large number of moonlets into
                                                                                                              [1]
                    orbit around the young Earth. These moonlets eventually coalesce to form the Moon. The gravitational pull of the new Moon
                                                                                                                         [2]
                    stabilises the Earth's fluctuating axis of rotation and sets up the conditions in which life formed.
4100 Ma The surface of the Earth cools enough for the crust to solidify. The atmosphere and the oceans form.[3] PAH infall,[4] and iron
sulfide synthesis along deep ocean platelet boundaries, may have led to the RNA world of competing organic compounds.
      Between 4500 The earliest life appears, possibly derived from self-reproducing RNA molecules.[5] [6] The replication of these organisms
       and 3500 Ma requires resources like energy, space, and smaller building blocks, which soon become limited, resulting in competition, with
                   natural selection favouring those molecules which are more efficient at replication. DNA molecules then take over as the main
                   replicators and these archaic genomes soon develop inside enclosing membranes which provide a stable physical and chemical
                                                                            [7] [8] [9]
                   environment conducive to their replication: proto-cells.
3900 Ma Late Heavy Bombardment: peak rate of impact events upon the inner planets by meteors. This constant disturbance may have
                    obliterated any life that had evolved to that point, or possibly not, as some early microbes could have survived in hydrothermal
                                                     [10]                                                           [11]
                    vents below the Earth's surface;      or life might have been transported to Earth by a meteor.
        Somewhere Cells resembling prokaryotes appear.[12] These first organisms are chemoautotrophs: they use carbon dioxide as a carbon source
     between 3900 - and oxidize inorganic materials to extract energy. Later, prokaryotes evolve glycolysis, a set of chemical reactions that free the
          2500 Ma energy of organic molecules such as glucose and store it in the chemical bonds of ATP. Glycolysis (and ATP) continue to be
                                                                          [13] [14]
                    used in almost all organisms, unchanged, to this day.
    Archean Eon
    3800 Ma – 2500 Ma
Date Event
    3500 Lifetime of the last universal ancestor;[15] [16] the split between bacteria and archaea occurs.[17]
     Ma                                                                                             [18]
         Bacteria develop primitive forms of photosynthesis which at first do not produce oxygen.        These organisms generate ATP by exploiting
         a proton gradient, a mechanism still used in virtually all organisms.
    3000 Photosynthesizing cyanobacteria evolve; they use water as a reducing agent, thereby producing oxygen as waste product.[19] More recent
     Ma research, however, suggests a later time of 2700 Ma. The oxygen initially oxidizes dissolved iron in the oceans, creating iron ore. The
         oxygen concentration in the atmosphere subsequently rises, acting as a poison for many bacteria. The moon is still very close to the earth
         and causes tides 1000 feet (305 m) high. The earth is continually wracked by hurricane force winds. These extreme mixing influences are
         thought to stimulate evolutionary processes. (See Oxygen catastrophe)
    Proterozoic Eon
    2500 Ma – 542 Ma
Timeline of evolution                                                                                                                                      85
Date Event
      By 1850 Eukaryotic cells appear.[20] [21] Eukaryotes contain membrane-bound organelles with diverse functions, probably derived from
          Ma prokaryotes engulfing each other via phagocytosis. (See Endosymbiosis)
1200 Ma Simple multicellular organisms evolve, mostly consisting of cell colonies of limited complexity.
      850–630 A global glaciation may have occurred.[23] [24] Opinion is divided on whether it increased or decreased biodiversity or the rate of
          Ma evolution.[25] [26] [27]
      580–542 The Ediacaran biota represent the first large, complex multicellular organisms - although their affinities remain a subject of debate.[28]
          Ma
      580–500 Most modern phyla of animals begin to appear in the fossil record during the Cambrian explosion.[29] [30]
          Ma
      580–540 The accumulation of atmospheric oxygen allows the formation of an ozone layer.[31] This blocks ultraviolet radiation, permitting the
          Ma colonisation of the land.[31]
    Phanerozoic Eon
    542 Ma – present
    The Phanerozoic Eon, literally the "period of well-displayed life", marks the appearance in the fossil record of
    abundant, shell-forming and/or trace-making organisms. It is subdivided into three eras, the Paleozoic, Mesozoic and
    Cenozoic, which are divided by major mass extinctions.
    Paleozoic Era
    542 Ma – 251.0 Ma
Date Event
      535 Major diversification of living things in the oceans: chordates, arthropods (e.g. trilobites, crustaceans), echinoderms, mollusks,
      Ma brachiopods, foraminifers and radiolarians, etc.
      530 The first known footprints on land date to 530 Ma, indicating that early animal explorations may have predated the development of
      Ma terrestrial plants.[32]
      450 Land arthropod burrows (millipedes) appear, along with the first complete conodonts and echinoids.
      Ma
      434 The first primitive plants move onto land,[33] having evolved from green algae living along the edges of lakes.[34] They are accompanied
      Ma by fungi, which may have aided the colonisation of land through symbiosis.
Timeline of evolution                                                                                                                                86
      410 First signs of teeth in fish. Earliest nautiid nautiloids, lycophytes, and trimerophytes.
      Ma
      395 First lichens, stoneworts. Earliest harvestman, mites, hexapods (springtails), and ammonoids.
      Ma
      363 By the start of the Carboniferous Period, the Earth begins to be recognisable. Insects roamed the land and would soon take to the skies;
      Ma sharks swam the oceans as top predators,[35] and vegetation covered the land, with seed-bearing plants and forests soon to flourish.
Four-limbed tetrapods gradually gain adaptations which will help them occupy a terrestrial life-habit.
      360 First crabs and ferns. Land flora dominated by seed ferns.
      Ma
      280 Earliest beetles, seed plants and conifers diversify while lepidodendrids and sphenopsids decrease. Terrestrial temnospondyl amphibians
      Ma and pelycosaurs (e.g. Dimetrodon) diversify in species.
     251.4 The Permian-Triassic extinction event eliminates over 90-95% of marine species. Terrestrial organisms were not as seriously affected as
       Ma the marine biota. This "clearing of the slate" may have led to an ensuing diversification, but life on land took 30M years to completely
                    [36]
           recover.
Mesozoic Era
Date Event
      From The Mesozoic Marine Revolution begins: increasingly well-adapted and diverse predators pressurise sessile marine groups; the "balance
      251.4 of power" in the oceans shifts dramatically as some groups of prey adapt more rapidly and effectively than others.
        Ma
225 Ma Earliest dinosaurs (prosauropods), first cardiid bivalves, diversity in cycads, bennettitaleans, and conifers. First teleost fishes.
220 Ma
             Gymnosperm forests dominate the land; herbivores grow to huge sizes in order to accommodate the large guts necessary to digest the
             nutrient-poor plants., first flies and turtles (Odontochelys). First Coelophysoid dinosaurs
200 Ma The first accepted evidence for viruses (at least, the group Geminiviridae) exists.[37] Viruses are still poorly understood and may have
           arisen before "life" itself, or may be a more recent phenomenon. Major extinctions in terrestrial vertebrates and large amphibians. Earliest
           examples of Ankylosaurian dinosaurs
    195 Ma First pterosaurs with specialized feeding (Dorygnathus). First sauropod dinosaurs. Diversification in small, ornithischian dinosaurs:
           heterodontosaurids, fabrosaurids, and scelidosaurids.
    190 Ma Pliosaurs appear in the fossil record. First lepidopteran insects (Archaeolepis), hermit crabs, modern starfish, irregular echinoids, corbulid
           bivalves, and tubulipore bryozoans. Extensive development of sponge reefs.
    170 Ma Earliest salamanders, newts, cryptoclidid & elasmosaurid plesiosaurs, and cladotherian mammals. Cynodonts become extinct while
           sauropod dinosaurs diversify.
    155 Ma First blood-sucking insects (ceratopogonids), rudist bivalves, and cheilosome bryozoans. Archaeopteryx, a possible ancestor to the birds,
           appears in the fossil record, along with triconodontid and symmetrodont mammals. Diversity in stegosaurian and theropod dinosaurs.
    130 Ma The rise of the Angiosperms: These flowering plants boast structures that attract insects and other animals to spread pollen. This
           innovation causes a major burst of animal evolution through co-evolution. First freshwater pelomedusid turtles.
110 Ma First hesperornithes, toothed diving birds. Earliest limopsid, verticordiid, and thyasirid bivalves.
106 Ma Spinosaurus, the largest theropod dinosaur, appears in the fossil record.
     90 Ma Extinction of ichthyosaurs. Earliest snakes and nuculanid bivalves. Large diversification in angiosperms: magnoliids, rosids,
           hamamelidids, monocots, and ginger. Earliest examples of ticks.
     68 Ma Tyrannosaurus, the largest terrestrial predator of North America appears in the fossil record. First species of Triceratops.
Timeline of evolution                                                                                                                                      88
    Cenozoic Era
    65.5 Ma – present
Date Event
       65.5 The Cretaceous–Tertiary extinction event eradicates about half of all animal species, including mosasaurs, pterosaurs, plesiosaurs,
        Ma ammonites, belemnites, rudist and inoceramid bivalves, most planktic foraminifers, and all of the dinosaurs excluding their descendants
                      [38]
            the birds
      From Rapid dominance of conifers and ginkgos in high latitudes, along with mammals becoming the dominant species. First psammobiid
     65 Ma bivalves. Rapid diversification in ants.
     60 Ma Diversification of large, flightless birds. Earliest true primates, along with the first semelid bivalves, edentates, carnivorous and
           lipotyphlan mammals, and owls. The ancestors of the carnivorous mammals (miacids) were alive.
56 Ma Gastornis, a large, flightless bird appears in the fossil record, becoming an apex predator at the time.
     55 Ma Modern bird groups diversify (first song birds, parrots, loons, swifts, woodpeckers), first whale (Himalayacetus), earliest rodents,
           lagomorphs, armadillos, appearance of sirenians, proboscideans, perissodactyl and artiodactyl mammals in the fossil record. Angiosperms
           diversify. The ancestor (according to theory) of the species in Carcharodon, the early mako shark Isurus hastalis, is alive.
     50 Ma Peak diversity of dinoflagellates and nanofossils, increase in diversity of anomalodesmatan and heteroconch bivalves, brontotheres, tapirs,
           rhinoceroses, and camels appear in the fossil record, diversification of primates.
     40 Ma Modern type butterflies and moths appear. Extinction of Gastornis. Basilosaurus, one of the first of the giant whales, appeared in the fossil
           record.
37 Ma First Nimravid carnivores ("False Saber-toothed Cats") - these species are unrelated to modern-type felines
     35 Ma Grasses evolve from among the angiosperms; grasslands begin to expand. Slight increase in diversity of cold-tolerant ostracods and
           foraminifers, along with major extinctions of gastropods, reptiles, and amphibians. Many modern mammal groups begin to appear: first
           glyptodonts, ground sloths, dogs, peccaries, and the first eagles and hawks. Diversity in toothed and baleen whales.
30 Ma First balanids and eucalypts, extinction of embrithopod and brontothere mammals, earliest pigs and cats.
28 Ma Paraceratherium appears in the fossil record, the largest terrestrial mammal that ever lived.
25 Ma First deer.
15 Ma Mammut appears in the fossil record, first bovids and kangaroos, diversity in Australian megafauna.
     10 Ma Grasslands and savannas are established, diversity in insects, especially ants and termites, horses increase in body size and develop
           high-crowned teeth, major diversification in grassland mammals and snakes.
      5 Ma First tree sloths and hippopotami, diversification of grazing herbivores, large carnivorous mammals, burrowing rodents, kangaroos, birds,
           and small carnivores, vultures increase in size, decrease in the number of perissodactyl mammals. Extinction of Nimravid carnivores
4 Ma Evolution of Australopithecus, Stupendemys appears in the fossil record as the largest freshwater turtle.
      3 Ma The Great American Interchange, where various land and freshwater faunas migrated between North and South America. Armadillos,
           opossums, hummingbirds, and vampire bats traveled to North America while horses, tapirs, saber-toothed cats, and deer entered South
           America. The first short-faced bears (Arctodus) appear.
        2 Ma First members of the genus Homo appear in the fossil record. Diversification of conifers in high latitudes. The eventual ancestor of cattle,
             Bos primigenius evolves in India
1.2 Ma Evolution of Homo antecessor. The last members of Paranthropus die out.
300 ka Gigantopithecus, a giant relative of the orangutan dies out from Asia
200 ka Anatomically modern humans appear in Africa.[39] [40] [41] Around 50,000 years before present they start colonising the other
30 ka Extinction of Neanderthals
15 ka The last Woolly rhinoceros (Coelodonta) are believed to have gone extinct
        11 ka The giant short-faced bears (Arctodus) vanish from North America, with the last Giant Ground Sloths dying out. All Equidae become
              extinct in North America
10 ka The Holocene Epoch starts 10,000[42] years ago after the Late Glacial Maximum. The last mainland species of Woolly mammoth
6 ka Small populations of American Mastodon die off in places like Utah and Michigan
        4500 The last members of a dwarf race of Woolly Mammoths vanish from Wrangel Island near Alaska
          ya
37 ya The Thylacine goes extinct in a Tasmanian zoo, the last member of the family Thylacinidae
    See also
    •     Evolutionary history of life
    •     Evolutionary history of plants
    •     Extinction events
    •     Geologic time scale
    •     History of Earth
    •     Natural history
    •     Sociocultural evolution
    •     Timeline of human evolution
    •     Timeline of plant evolution
    Further reading
    • The Ancestor's Tale by Richard Dawkins, for a list of ancestors common to humans and other living species
    References
    [1] Planetary Science Institute page (http:/ / www. psi. edu/ projects/ moon/ moon. html) on the Giant Impact Hypothesis. Hartmann and Davis
        belonged to the PSI. This page also contains several paintings of the impact by Hartmann himself.
    [2] "Because the Moon helps stabilize the tilt of the Earth's rotation, it prevents the Earth from wobbling between climatic extremes. Without the
        Moon, seasonal shifts would likely outpace even the most adaptable forms of life." Making the Moon (http:/ / saturn. astrobio. net/
        pressrelease/ 50/ making-the-moon) Astrobiology Magazine. (URL accessed on August 7, 2010)
    [3] "However, once the Earth cooled sufficiently, sometime in the first 700 million years of its existence, clouds began to form in the atmosphere,
        and the Earth entered a new phase of development." How the Oceans Formed (http:/ / www. oceansonline. com/ ocean_form. htm) (URL
Timeline of evolution                                                                                                                                     90
    [30] The Cambrian Explosion – Timing (http:/ / palaeo. gly. bris. ac. uk/ Palaeofiles/ Cambrian/ timing/ timing. html)
    [31] Formation of the Ozone Layer (http:/ / jcbmac. chem. brown. edu/ myl/ ct7/ ozone/ ozone_formation. html)
    [32] "The oldest fossils of footprints ever found on land hint that animals may have beaten plants out of the primordial seas. Lobster-sized,
        centipede-like or slug like animals such as Protichnites and Climactichnites made the prints wading out of the ocean and scuttling over sand
        dunes about 530 million years ago. Previous fossils indicated that animals didn't take this step until 40 million years later." Oldest fossil
        footprints on land (http:/ / www. innovations-report. com/ html/ reports/ earth_sciences/ report-9641. html)
    [33] "The oldest fossils reveal evolution of non-vascular plants by the middle to late Ordovician Period (~450–440 Ma) on the basis of fossil
        spores" Transition of plants to land (http:/ / www. clas. ufl. edu/ users/ pciesiel/ gly3150/ plant. html)
    [34] "The land plants evolved from the algae, more specifically green algae, as suggested by certain common biochemical traits" The first land
        plants (http:/ / scitec. uwichill. edu. bb/ bcs/ bl14apl/ conq. htm)
    [35] "The ancestry of sharks dates back more than 200 million years before the earliest known dinosaur. Introduction to shark evolution, geologic
        time and age determination (http:/ / www. elasmo-research. org/ education/ evolution/ evol_s_predator. htm)
    [36] Sahney, S. and Benton, M.J. (2008). "Recovery from the most profound mass extinction of all time" (http:/ / journals. royalsociety. org/
        content/ qq5un1810k7605h5/ fulltext. pdf) (PDF). Proceedings of the Royal Society: Biological 275 (1636): 759. doi:10.1098/rspb.2007.1370.
        PMID 18198148. PMC 2596898. .
    [37] "Viruses of nearly all the major classes of organisms—animals, plants, fungi and bacteria/archaea—probably evolved with their hosts in the
        seas, given that most of the evolution of life on this planet has occurred there. This means that viruses also probably emerged from the waters
        with their different hosts, during the successive waves of colonisation of the terrestrial environment." Origins of Viruses (http:/ / www. mcb.
        uct. ac. za/ tutorial/ virorig. html) (URL accessed on January 9, 2005)
    [38] Chiappe, Luis M., & Dyke, Gareth J. (2002). "The Mesozoic Radiation of Birds". Annual Review of Ecology & Systematics 33: 91–124.
        doi:10.1146/annurev.ecolsys.33.010802.150517.
    [39] The Oldest Homo Sapiens: (http:/ / www. sciencedaily. com/ releases/ 2005/ 02/ 050223122209. htm) - URL retrieved May 15, 2009
    [40] Alemseged, Z., Coppens, Y., Geraads, D. (2002). "Hominid cranium from Homo: Description and taxonomy of Homo-323-1976-896". Am J
        Phys Anthropol 117 (2): 103–12. doi:10.1002/ajpa.10032. PMID 11815945.
    [41] Stoneking, Mark; Soodyall, Himla (1996). "Human evolution and the mitochondrial genome". Current Opinion in Genetics & Development
        6 (6): 731–6. doi:10.1016/S0959-437X(96)80028-1.
    [42] "International Stratigraphic Chart" (http:/ / www. stratigraphy. org/ cheu. pdf). International Commission on Stratigraphy. . Retrieved
        2009-02-03.
    External links
    • Berkeley Evolution (http://www.ucmp.berkeley.edu)
    • Tree of Life Web Project (http://tolweb.org/Life_on_Earth/1) - explore complete phylogenetic tree
      interactively
    • A more compact timeline (http://www.talkorigins.org/origins/geo_timeline.html) at the TalkOrigins Archive
    • Palaeos - The Trace of Life on Earth (http://www.palaeos.com)
    • University of Waikato - Sequence of Plant Evolution (http://sci.waikato.ac.nz/evolution/plantEvolution.
      shtml)
    • University of Waikato - Sequence of Animal Evolution (http://sci.waikato.ac.nz/evolution/AnimalEvolution.
      shtml)
    • Graphical Timeline of evolution (http://www.wikitimescale.org/en/wiki/Evolution_on_Earth)
    • History of Life on Earth (http://members.iinet.com.au/~drage/)
    • Exploring Time (http://exploringtime.org/?page=segments) from Planck Time to the lifespan of the universe
    • Interactive Plant Evolution Timeline (http://www.ensemble.ac.uk/projects/plantsci/timeline) - from the
      University of Cambridge Ensemble Project
                                                                                                                                   92
History
Following the establishment of evolutionary biology, studies of mutation and variation in natural populations,
combined with biogeography and systematics, led to sophisticated mathematical and causal models of evolution.
Paleontology and comparative anatomy allowed more detailed reconstructions of the history of life. After the rise of
molecular genetics in the 1950s, the field of molecular evolution developed, based on protein sequences and
immunological tests, and later incorporating RNA and DNA studies. The gene-centered view of evolution rose to
History of evolutionary thought                                                                                                       93
    prominence in the 1960s, followed by the neutral theory of molecular evolution, sparking debates over
    adaptationism, the units of selection, and the relative importance of genetic drift versus natural selection. In the late
    20th century, DNA sequencing led to molecular phylogenetics and the reorganization of the tree of life into the
    three-domain system. In addition, the newly recognized factors of symbiogenesis and horizontal gene transfer
    introduced yet more complexity into evolutionary history.
Antiquity
    Greeks
    Several ancient Greek philosophers discussed ideas that involved change in living organisms over time.
    Anaximander (c.610–546 BC) proposed that the first animals lived in water and animals that live on land were
    generated from them.[1] Empedocles (c. 490–430 BC) wrote of a non-supernatural origin for living things,[2]
    suggesting that adaptation did not require an organizer or final cause. Aristotle summarized his idea: "Wherever then
    all the parts came about just what they would have been if they had come to be for an end, such things survived,
    being organized spontaneously in a fitting way; whereas those which grew otherwise perished and continue to
    perish ..." although Aristotle himself rejected this view.[3]
    Plato (c. 428–348 BC) was, in the words of biologist and historian Ernst Mayr,
    "the great antihero of evolutionism",[4] as he established the philosophy of
    essentialism, which he called the Theory of Forms. This theory holds that objects
    observed in the real world are only reflections of a limited number of essences
    (eide). Variation merely results from an imperfect reflection of these constant
    essences. In his Timaeus, Plato set forth the idea that the Demiurge had created
    the cosmos and everything in it because, being good, and hence, "... free from
    jealousy, He desired that all things should be as like Himself as they could be".
    The creator created all conceivable forms of life, since "... without them the
    universe will be incomplete, for it will not contain every kind of animal which it
    ought to contain, if it is to be perfect". This "plenitude principle"—the idea that
    all potential forms of life are essential to a perfect creation—greatly influenced        Plato (left) and Aristotle (right), a
    Christian thought.[5]                                                                       detail of The School of Athens
    Aristotle (384–322 BC), one of the most influential of the Greek philosophers, is
    the earliest natural historian whose work has been preserved in any real detail. His writings on biology resulted from
    his research into natural history on and around the isle of Lesbos, and have survived in the form of four books,
    usually known by their Latin names, De anima (on the essence of life), Historia animalium (inquiries about
    animals), De generatione animalium (reproduction), and De partibus animalium (anatomy). Aristotle's works contain
    some remarkably astute observations and interpretations—along with sundry myths and mistakes—reflecting the
    uneven state of knowledge during his time.[6] However, for Charles Singer, "Nothing is more remarkable than
    [Aristotle's] efforts to [exhibit] the relationships of living things as a scala naturæ."[6] This scala naturæ, described
    in Historia animalium, classified organisms in relation to a hierarchical "Ladder of Life" or "Chain of Being",
    placing them according to their complexity of structure and function, with organisms that showed greater vitality and
    ability to move described as "higher organisms".[5]
History of evolutionary thought                                                                                                 94
    Chinese
    Ideas on changing biologic species were expressed by ancient Chinese thinkers such as Zhuangzi (Chuang Tzu), a
    Taoist philosopher who lived around the 4th century BC. According to Joseph Needham, Taoism explicitly denies
    the fixity of biological species and Taoist philosophers speculated that species had developed differing attributes in
    response to differing environments.[7] Humans, nature and the heavens are seen as existing in a state of "constant
    transformation" known as the Tao, in contrast with the more static view of nature typical of Western thought.[8]
    Romans
    Titus Lucretius Carus (d. 50 BC), the Roman philosopher and atomist, wrote the poem On the Nature of Things (De
    rerum natura), which provides the best surviving explanation of the ideas of the Greek Epicurean philosophers. It
    describes the development of the cosmos, the Earth, living things, and human society through purely naturalistic
    mechanisms, without any reference to supernatural involvement. On the Nature of things would influence the
    cosmological and evolutionary speculations of philosophers and scientists during and after the Renaissance.[9] [10]
    Augustine of Hippo
    In line with earlier Greek thought, the 4th century bishop and theologian, St. Augustine of Hippo, wrote that the
    creation story in Genesis should not be read too literally. In his book De Genesi ad litteram ("On The Literal
    Interpretation of Genesis"), he stated that in some cases new creatures may have come about through the
    "decomposition" of earlier forms of life.[11] For Augustine, "plant, fowl and animal life are not perfect ... but created
    in a state of potentiality", unlike what he considered the theologically perfect forms of angels, the firmament and the
    human soul.[12] Augustine's idea 'that forms of life had been transformed "slowly over time"' prompted Father
    Giuseppe Tanzella-Nitti, Professor of Theology at the Pontifical Santa Croce University in Rome, to claim that
    Augustine had suggested a form of evolution.[13] [14]
Middle Ages
    Creatures on adjacent steps were expected to closely resemble each other, an idea expressed in the saying: natura
    non facit saltum ("nature does not make leaps").[5] This basic concept of the great chain of being greatly influenced
    the thinking of Western civilization for centuries (and still has an influence today). It formed a part of the argument
    from design presented by natural theology. As a classification system, it became the major organizing principle and
    foundation of the emerging science of biology in the 17th and 18th centuries.[5]
    Later in the 18th century, the French philosopher G. L. L. Buffon, one of the leading 18th century naturalists,
    suggested that what most people referred to as species were really just well-marked varieties, modified from an
    original form by environmental factors. For example, he believed that lions, tigers, leopards and house cats might all
    have a common ancestor. He further speculated that the 200 or so species of mammals then known might have
    descended from as few as 38 original animal forms. Buffon's evolutionary ideas were limited; he believed each of the
    original forms had arisen through spontaneous generation and that each was shaped by "internal moulds" that limited
    the amount of change. Buffon's works, Natural History and The Epochs of Nature, containing well developed
    theories about a completely materialistic origin for the Earth and his ideas questioning the fixity of species, were
    extremely influential.[24] [25] Between 1767 and 1792, James Burnett, Lord Monboddo included in his writings not
    only the concept that man had descended from primates, but also that, in response to the environment, creatures had
    found methods of transforming their characteristics over long time intervals.[26] Charles Darwin's grandfather,
    Erasmus Darwin, published Zoönomia in 1796, which suggested that "all warm-blooded animals have arisen from
    one living filament".[27] In his 1802 poem Temple of Nature, he described the rise of life from minute organisms
    living in mud to all of its modern diversity.[28]
History of evolutionary thought                                                                                                  97
    From 1830 to 1833, Charles Lyell published his multi-volume work Principles of Geology, which, building on
    Hutton's ideas, advocated a uniformitarian alternative to the catastrophic theory of geology. Lyell claimed that, rather
    than being the products of cataclysmic (and possibly supernatural) events, the geologic features of the Earth are
    better explained as the result of the same gradual geologic forces observable in the present day—but acting over
    immensely long periods of time. Although Lyell opposed evolutionary ideas (even questioning the consensus that the
    fossil record demonstrates a true progression), his concept that the Earth was shaped by forces working gradually
    over an extended period, and the immense age of the Earth assumed by his theories, would strongly influence future
    evolutionary thinkers such as Charles Darwin.[35]
History of evolutionary thought                                                                                                     98
    Transmutation of species
    Jean-Baptiste Lamarck proposed, in his Philosophie Zoologique of
    1809, a theory of the transmutation of species. Lamarck did not believe
    that all living things shared a common ancestor but rather that simple
    forms of life were created continuously by spontaneous generation. He
    also believed that an innate life force drove species to become more
    complex over time, advancing up a linear ladder of complexity that
    was related to the great chain of being. Lamarck recognized that
    species were adapted to their environment. He explained this by saying
    that the same innate force driving increasing complexity caused the
    organs of an animal (or a plant) to change based on the use or disuse of
    those organs, just as muscles are affected by exercise. He argued that
    these changes would be inherited by the next generation and produce
    slow adaptation to the environment. It was this secondary mechanism
    of adaptation through the inheritance of acquired characteristics that
    would become known as Lamarckism and would influence discussions
    of evolution into the 20th century.[36] [37]
    In 1844, the Scottish publisher Robert Chambers anonymously published an extremely controversial but widely read
    book entitled Vestiges of the Natural History of Creation. This book proposed an evolutionary scenario for the
    origins of the Solar System and life on Earth. It claimed that the fossil record showed a progressive ascent of animals
    with current animals being branches off a main line that leads progressively to humanity. It implied that the
    transmutations lead to the unfolding of a preordained plan that had been woven into the laws that governed the
    universe. In this sense it was less completely materialistic than the ideas of radicals like Robert Grant, but its
    implication that humans were only the last step in the ascent of animal life incensed many conservative thinkers. The
    high profile of the public debate over Vestiges, with its depiction of evolution as a progressive process, would greatly
    influence the perception of Darwin's theory a decade later.[40] [41]
    Ideas about the transmutation of species were associated with the radical materialism of the Enlightenment and were
    attacked by more conservative thinkers. Georges Cuvier attacked the ideas of Lamarck and Geoffroy Saint-Hilaire,
    agreeing with Aristotle that species were immutable. Cuvier believed that the individual parts of an animal were too
    closely correlated with one another to allow for one part of the anatomy to change in isolation from the others, and
    argued that the fossil record showed patterns of catastrophic extinctions followed by re-population, rather than
    gradual change over time. He also noted that drawings of animals and animal mummies from Egypt, which were
History of evolutionary thought                                                                                                   99
    thousands of years old, showed no signs of change when compared with modern animals. The strength of Cuvier's
    arguments and his scientific reputation helped keep transmutational ideas out of the mainstream for decades.[42]
                                                    In Britain the philosophy of natural theology remained influential.
                                                    William Paley's 1802 book Natural Theology with its famous
                                                    watchmaker analogy had been written at least in part as a response to
                                                    the transmutational ideas of Erasmus Darwin.[43] Geologists influenced
                                                    by natural theology, such as Buckland and Sedgwick, made a regular
                                                    practice of attacking the evolutionary ideas of Lamarck, Grant, and The
       This 1847 diagram by Richard Owen shows his  Vestiges of the Natural History of Creation.[44] [45] Although the
          conceptual archetype for all vertebrates.
                                                    geologist Charles Lyell opposed scriptural geology, he also believed in
                                                    the immutability of species, and in his Principles of Geology
    (1830–1833), he criticized Lamarck's theories of development.[35] Idealists such as Louis Agassiz and Richard Owen
    believed that each species was fixed and unchangeable because it represented an idea in the mind of the creator.
    They believed that relationships between species could be discerned from developmental patterns in embryology, as
    well as in the fossil record, but that these relationships represented an underlying pattern of divine thought, with
    progressive creation leading to increasing complexity and culminating in humanity. Owen developed the idea of
    "archetypes" in the Divine mind that would produce a sequence of species related by anatomical homologies, such as
    vertebrate limbs. Owen led a public campaign that successfully marginalized Robert Grant in the scientific
    community. Darwin would make good use of the homologies analyzed by Owen in his own theory, but the harsh
    treatment of Grant, and the controversy surrounding Vestiges, showed him the need to ensure that his own ideas were
    scientifically sound.[39] [46] [47]
           The suggestion that new species may result from the selective action of external conditions upon the
           variations from their specific type which individuals present and which we call spontaneous because we
           are ignorant of their causation is as wholly unknown to the historian of scientific ideas as it was to
           biological specialists before 1858. But that suggestion is the central idea of the Origin of Species, and
           contains the quintessence of Darwinism.[55]
    Natural selection
    The biogeographical patterns Charles Darwin observed
    in places such as the Galapagos islands during the
    voyage of the Beagle caused him to doubt the fixity of
    species, and in 1837 Darwin started the first of a series
    of secret notebooks on transmutation. Darwin's
    observations led him to view transmutation as a process
    of divergence and branching, rather than the ladder-like
    progression envisioned by Lamarck and others. In 1838
    he read the new 6th edition of An Essay on the
    Principle of Population, written in the late 18th century
    by Thomas Malthus. Malthus' idea of population
    growth leading to a struggle for survival combined with
    Darwin's knowledge on how breeders selected traits,
    led to the inception of Darwin's theory of natural
    selection. Darwin did not publish his ideas on evolution   Darwin's first sketch of an evolutionary tree from his First Notebook
    for 20 years. However he did share them with certain                        on Transmutation of Species (1837)
    Unlike Darwin, Alfred Russel Wallace, influenced by the book Vestiges of the Natural History of Creation, already
    suspected that transmutation of species occurred when he began his career as a naturalist. By 1855 his
    biogeographical observations during his field work in South America and the Malay Archipelago made him
    confident enough in a branching pattern of evolution to publish a paper stating that every species originated in close
    proximity to an already existing closely allied species. Like Darwin, it was Wallace's consideration of how the ideas
    of Malthus might apply to animal populations that led him to conclusions very similar to those reached by Darwin
    about the role of natural selection. In February 1858 Wallace, unaware of Darwin's unpublished ideas, composed his
    thoughts into an essay and mailed them to Darwin, asking for his opinion. The result was the joint publication in July
    of an extract from Darwin's 1844 essay along with Wallace's letter. Darwin also began work on a short abstract
    summarising his theory, which he would publish in 1859 as On the Origin of Species.[58]
History of evolutionary thought                                                                                                 101
    Darwin's theory succeeded in profoundly altering scientific opinion regarding the development of life and in
    producing a small philosophical revolution.[65] However, this theory could not explain several critical components of
    the evolutionary process. Specifically, Darwin was unable to explain the source of variation in traits within a species,
    and could not identify a mechanism that could pass traits faithfully from one generation to the next. Darwin's
    hypothesis of pangenesis, while relying in part on the inheritance of acquired characteristics, proved to be useful for
    statistical models of evolution that were developed by his cousin Francis Galton and the "biometric" school of
    evolutionary thought. However, this idea proved to be of little use to other biologists.[66]
History of evolutionary thought                                                                                                       102
    Application to humans
    Charles Darwin was aware of the severe reaction in
    some parts of the scientific community against the
    suggestion made in Vestiges of the Natural History of
    Creation that humans had arisen from animals by a
    process of transmutation. Therefore he almost
    completely ignored the topic of human evolution in The
    Origin of Species. Despite this precaution, the issue
    featured prominently in the debate that followed the
    book's publication. For most of the first half of the 19th
    century, the scientific community believed that,
                                                                    This illustration was the frontispiece of Thomas Henry Huxley's
    although geology had shown that the Earth and life                     book Evidence as to Man's Place in Nature (1863).
    were very old, human beings had appeared suddenly
    just a few thousand years before the present. However, a series of archaeological discoveries in the 1840s and 1850s
    showed stone tools associated with the remains of extinct animals. By the early 1860s, as summarized in Charles
    Lyell's 1863 book Geological Evidences of the Antiquity of Man, it had become widely accepted that humans had
    existed during a prehistoric period – which stretched many thousands of years before the start of written history.
    This view of human history was more compatible with an evolutionary origin for humanity than was the older view.
    On the other hand, at that time there was no fossil evidence to demonstrate human evolution. The only human fossils
    found before the discovery of Java man in the 1890s were either of anatomically modern humans or of Neanderthals
    that were too close, especially in the critical characteristic of cranial capacity, to modern humans for them to be
    convincing intermediates between humans and other primates.[67]
    Therefore the debate that immediately followed the publication of The Origin of Species centered on the similarities
    and differences between humans and modern apes. Carolus Linnaeus had been criticised in the 18th century for
    grouping humans and apes together as primates in his ground breaking classification system.[68] Richard Owen
    vigorously defended the classification suggested by Cuvier and Johann Friedrich Blumenbach that placed humans in
    a separate order from any of the other mammals, which by the early 19th century had become the orthodox view. On
    the other hand, Thomas Henry Huxley sought to demonstrate a close anatomical relationship between humans and
    apes. In one famous incident, Huxley showed that Owen was mistaken in claiming that the brains of gorillas lacked a
    structure present in human brains. Huxley summarized his argument in his highly influential 1863 book Evidence as
    to Man's Place in Nature. Another viewpoint was advocated by Charles Lyell and Alfred Russel Wallace. They
    agreed that humans shared a common ancestor with apes, but questioned whether any purely materialistic
    mechanism could account for all the differences between humans and apes, especially some aspects of the human
    mind.[67]
    In 1871, Darwin published The Descent of Man, and Selection in Relation to Sex, which contained his views on
    human evolution. Darwin argued that the differences between the human mind and the minds of the higher animals
    were a matter of degree rather than of kind. For example, he viewed morality as a natural outgrowth of instincts that
    were beneficial to animals living in social groups. He argued that all the differences between humans and apes were
    explained by a combination of the selective pressures that came from our ancestors moving from the trees to the
    plains, and sexual selection. The debate over human origins, and over the degree of human uniqueness continued
    well into the 20th century.[67]
History of evolutionary thought                                                                                                     103
    Orthogenesis was the hypothesis that life has an innate tendency to change, in a unilinear fashion, towards
    ever-greater perfection. It had a significant following in the 19th century, and its proponents included the Russian
    biologist Leo Berg and the American paleontologist Henry Fairfield Osborn. Orthogenesis was popular among some
    paleontologists, who believed that the fossil record showed a gradual and constant unidirectional change.
    Saltationism was the idea that new species arise as a result of large mutations. It was seen as a much faster
    alternative to the Darwinian concept of a gradual process of small random variations being acted on by natural
    selection, and was popular with early geneticists such as Hugo de Vries, William Bateson, and early in his career, T.
    H. Morgan. It became the basis of the mutation theory of evolution.[69] [70]
History of evolutionary thought                                                                                                      104
    When T. H. Morgan began experimenting with breeding the fruit fly Drosophila melanogaster, he was a saltationist
    who hoped to demonstrate that a new species could be created in the lab by mutation alone. Instead, the work at his
    lab between 1910 and 1915 reconfirmed Mendelian genetics and provided solid experimental evidence linking it to
    chromosomal inheritance. His work also demonstrated that most mutations had relatively small effects, such as a
    change in eye color, and that rather than creating a new species in a single step, mutations served to increase
    variation within the existing population.[71] [72]
1920s–1940s
    Population genetics
    The Mendelian and biometrician models were eventually reconciled with the development of population genetics. A
    key step was the work of the British biologist and statistician R.A. Fisher. In a series of papers starting in 1918 and
    culminating in his 1930 book The Genetical Theory of Natural Selection, Fisher showed that the continuous variation
    measured by the biometricians could be produced by the combined action of many discrete genes, and that natural
    selection could change gene frequencies in a population, resulting in evolution. In a series of papers beginning in
    1924, another British geneticist, J.B.S. Haldane, applied statistical analysis to real-world examples of natural
    selection, such as the evolution of industrial melanism in peppered moths, and showed that natural selection worked
    at an even faster rate than Fisher assumed.[73] [74]
    The American biologist Sewall Wright, who had a background in animal breeding experiments, focused on
    combinations of interacting genes, and the effects of inbreeding on small, relatively isolated populations that
    exhibited genetic drift. In 1932, Wright introduced the concept of an adaptive landscape and argued that genetic drift
    and inbreeding could drive a small, isolated sub-population away from an adaptive peak, allowing natural selection
    to drive it towards different adaptive peaks. The work of Fisher, Haldane and Wright founded the discipline of
    population genetics. This integrated natural selection with Mendelian genetics, which was the critical first step in
    developing a unified theory of how evolution worked.[73] [74]
    The evolutionary synthesis provided a conceptual core—in particular, natural selection and Mendelian population
    genetics—that tied together many, but not all, biological disciplines. It helped establish the legitimacy of
    evolutionary biology, a primarily historical science, in a scientific climate that favored experimental methods over
    historical ones.[79] The synthesis also resulted in a considerable narrowing of the range of mainstream evolutionary
    thought (what Stephen Jay Gould called the "hardening of the synthesis"): by the 1950s, natural selection acting on
    genetic variation was virtually the only acceptable mechanism of evolutionary change (panselectionism), and
    macroevolution was simply considered the result of extensive microevolution.[80] [81]
    Gene-centered view
    In the mid-1960s, George C. Williams strongly critiqued explanations of adaptations worded in terms of "survival of
    the species" (group selection arguments). Such explanations were largely replaced by a gene-centered view of
    evolution, epitomized by the kin selection arguments of W. D. Hamilton, George R. Price and John Maynard
    Smith.[86] This viewpoint would be summarized and popularized in the influential 1976 book The Selfish Gene by
    Richard Dawkins.[87] Models of the period showed that group selection was severely limited in its strength; though
    newer models do admit the possibility of significant multi-level selection.[88]
    In 1973, Leigh Van Valen proposed the term "Red Queen", which he took from Through the Looking-Glass by
    Lewis Carroll, to describe a scenario where a species involved in one or more evolutionary arms races would have to
    constantly change just to keep pace with the species with which it was co-evolving. Hamilton, Williams and others
    suggested that this idea might explain the evolution of sexual reproduction: the increased genetic diversity caused by
    sexual reproduction would help maintain resistance against rapidly evolving parasites, thus making sexual
    reproduction common, despite the tremendous cost from the gene-centric point of view of a system where only half
    of an organism's genome is passed on during reproduction.[89] [90] The gene-centric view has also led to an increased
    interest in Darwin's old idea of sexual selection,[91] and more recently in topics such as sexual conflict and
    intragenomic conflict.
History of evolutionary thought                                                                                                       107
    Sociobiology
    W. D. Hamilton's work on kin selection contributed to the emergence of the discipline of sociobiology. The
    existence of altruistic behaviors has been a difficult problem for evolutionary theorists from the beginning.[92]
    Significant progress was made in 1964 when Hamilton formulated the inequality in kin selection known as
    Hamilton's rule, which showed how eusociality in insects (the existence of sterile worker classes) and many other
    examples of altruistic behavior could have evolved through kin selection. Other theories followed, some derived
    from game theory, such as reciprocal altruism.[93] In 1975, E.O. Wilson published the influential and highly
    controversial book Sociobiology: The New Synthesis which claimed evolutionary theory could help explain many
    aspects of animal, including human, behavior. Critics of sociobiology, including Stephen Jay Gould and Richard
    Lewontin, claimed that sociobiology greatly overstated the degree to which complex human behaviors could be
    determined by genetic factors. They also claimed that the theories of sociobiologists often reflected their own
    ideological biases. Despite these criticisms, work has continued in sociobiology and the related discipline of
    evolutionary psychology, including work on other aspects of the altruism problem.[94] [95]
    continued to expand, it has been suggested that lateral transfer of genetic material has played an important role in the
    evolution of all organisms.[110] These high levels of horizontal gene transfer have led to suggestions that the family
    tree of today's organisms, the so-called "tree of life", is more similar to an interconnected web or net.[111] [112]
    Indeed, as part of the endosymbiotic theory for the origin of organelles, a form of horizontal gene transfer has been a
    critical step in the evolution of eukaryotes such as fungi, plants, and animals.[113] [114] The endosymbiotic theory
    holds that organelles within the cells of eukorytes such as mitochondria and chloroplasts, had descended from
    independent bacteria that came to live symbiotically within other cells. It had been suggested in the late 19th century
    when similarities between mitochondria and bacteria were noted, but largely dismissed until it was revived and
    championed by Lynn Margulis in the 1960s and 70s; Margulis was able to make use of new evidence that such
    organelles had their own DNA that was inherited independently from that in the cell's nucleus.[115]
21st century
    Epigenetic inheritance
    Yet another area where developmental biology has led to the questioning of some tenets of the modern evolutionary
    synthesis is in the field of epigenetics, the study of how environmental factors affect the way genes express
    themselves during development. By the first decade of the 21st century it had become accepted that in some cases
    such environmental factors could affect the expression of genes in subsequent generations even though the offspring
    were not exposed to the same environmental factors, and there had been no genetic changes. This shows that in some
    cases non genetic changes to an organism can be inherited and it has been suggested that such inheritance can help
    with adaptation to local conditions and affect evolution.[123] [124] Some have suggested that in some cases a form of
History of evolutionary thought                                                                                                                         109
    Omega Point
    Pierre Teilhard de Chardin's metaphysical Omega Point Theory describes the gradual development of the universe
    from subatomic particles to human society, which he viewed as its final stage and goal.
    Gaia hypothesis
    Teilhard de Chardin's ideas have been seen as being connected to the more specific Gaia theory by James Lovelock,
    who proposed that the living and nonliving parts of Earth can be viewed as a complex interacting system with
    similarities to a single organism.[126] The Gaia hypothesis has also been viewed by Lynn Margulis[127] and others as
    an extension of endosymbiosis and exosymbiosis.[128] This modified hypothesis postulates that all living things have
    a regulatory effect on the Earth's environment that promotes life overall.
    Transhumanism
    Futurists have often viewed scientific and technological progress as a continuation of biological evolution. Among
    these, transhumanists often view such technological evolution itself as a goal in their philosophy, possibly in the
    form of a technological singularity.
    See also
    • Faith and rationality
    • Galápagos Islands
    • The Voyage of the Beagle
    Notes
    [1] Couprie, Dirk L.. "Anaximander" (http:/ / www. iep. utm. edu/ anaximan/ #H8). Internet Encyclopedia of Philosophy. . Retrieved
        2010-02-27.
    [2] Campbell, Gordon. "Empedocles" (http:/ / www. iep. utm. edu/ e/ empedocl. htm#H4). Internet Encyclopedia of Philosophy. . Retrieved
        2008-07-15.
    [3] Hardie, R.P.; R. K. Gaye. "Physics by Aristotle" (http:/ / classics. mit. edu/ Aristotle/ physics. 2. ii. html). . Retrieved 2008-07-15.
    [4] Mayr 1982, p. 304
    [5] Johnston, Ian (1999). "Section Three: The Origins of Evolutionary Theory" (http:/ / records. viu. ca/ ~johnstoi/ darwin/ sect3. htm). ... And
        Still We Evolve: A Handbook on the History of Modern Science. Liberal Studies Department, Malaspina University College. . Retrieved
        2007-08-11.
    [6] Singer 1931
    [7] Needham & Ronan 1995, p. 101
    [8] Miller, James (January 8, 2008). "Daoism and Nature" (http:/ / www. jamesmiller. ca/ RAS lecture on daoism and nature. pdf) (PDF). Royal
        Asiatic Society. . Retrieved 2008-07-15.
    [9] Sedley, David (August 4, 2004). "Lucretius" (http:/ / plato. stanford. edu/ entries/ lucretius/ ). Stanford Encyclopedia of Philosophy. .
        Retrieved 2008-07-24.
    [10] Simpson, David (2006). "Lucretius" (http:/ / www. iep. utm. edu/ l/ lucretiu. htm). The Internet Encyclopedia of Philosophy. . Retrieved
        2008-07-24.
    [11] Augustine 1982, pp. 89–90
    [12] Gill 2005, p. 251
    [13] Owen, Richard (2009-02-11). "Vatican buries the hatchet with Charles Darwin" (http:/ / www. timesonline. co. uk/ tol/ comment/ faith/
        article5705331. ece). London: Times Online. . Retrieved 2009-02-12.
    [14] Irvine, Chris (2009-02-12). "The Vatican claims Darwin's theory of evolution is compatible with Christianity" (http:/ / www. telegraph. co.
        uk/ news/ newstopics/ religion/ 4588289/ The-Vatican-claims-Darwins-theory-of-evolution-is-compatible-with-Christianity. html). London:
        Telegraph.co.uk. . Retrieved 2009-02-12.
History of evolutionary thought                                                                                                                           110
    [15] "Medieval and Renaissance Concepts of Evolution and Paleontology" (http:/ / www. ucmp. berkeley. edu/ history/ medieval. html).
        University of California Museum of Paleontology. . Retrieved 11-3-2010.
    [16] Conway Zirkle (1941). Natural Selection before the "Origin of Species", Proceedings of the American Philosophical Society 84 (1), pp.
        71–123.
    [17] Frank N. Egerton, "A History of the Ecological Sciences, Part 6: Arabic Language Science – Origins and Zoological", Bulletin of the
        Ecological Society of America, April 2002: 142–146 [143]
    [18] Lovejoy 1936, pp. 67–80
    [19] Carroll, William E.. "Creation, Evolution, and Thomas Aquinas" (http:/ / www. catholiceducation. org/ articles/ science/ sc0035. html).
        Catholic Education Resource Center. . Retrieved 2010-03-20.
    [20] Thomas Aquinas. "Physica Book 2, Lecture 14" (http:/ / dhspriory. org/ thomas/ Physics2. htm#14). Fathers of the English Dominican
        Province. . Retrieved 2010-03-23.
    [21] Bowler 2003, pp. 33–38
    [22] Schelling, System of Transcendental Idealism, 1800
    [23] Bowler 2003, pp. 73–75
    [24] Bowler 2003, pp. 75–80
    [25] Larson 2004, pp. 14–15
    [26] Henderson 2000
    [27] Darwin 1818, Vol I section XXXIX
    [28] Darwin 1825, p. 15
    [29] Larson 2004, p. 7
    [30] American Museum of Natural History (2000). "James Hutton: The Founder of Modern Geology" (http:/ / www. amnh. org/ education/
        resources/ rfl/ web/ essaybooks/ earth/ p_hutton. html). Earth: Inside and Out. . "we find no vestige of a beginning, no prospect of an end."
    [31] Bowler 2003, p. 113
    [32] Larson 2004, pp. 29–38
    [33] Bowler 2003, pp. 115–116
    [34] "Darwin and design: historical essay" (http:/ / www. darwinproject. ac. uk/ content/ view/ 110/ 104/ ). Darwin Correspondence Project. .
        Retrieved 2008-01-17.
    [35] Bowler 2003, pp. 129–134
    [36] Bowler 2003, pp. 86–94
    [37] Larson 2004, pp. 38–41
    [38] Desmon & Moore 1993, p. 40
    [39] Bowler 2003, pp. 120–129
    [40] Bowler 2003, pp. 134–138
    [41] Bowler & Morus 2005, pp. 142–143
    [42] Larson 2004, pp. 5–24
    [43] Bowler 2003, pp. 103–104
    [44] Larson 2004, pp. 37–38
    [45] Bowler 2003, p. 138
    [46] Larson 2004, pp. 42–46
    [47] van Wyhe, John (27 March 2007). "Mind the gap: Did Darwin avoid publishing his theory for many years?" (http:/ / darwin-online. org. uk/
        content/ frameset?viewtype=text& itemID=A544& pageseq=1). pp. 177–205. doi:10.1098/rsnr.2006.0171. . Retrieved 2009-11-17.
    [48] Darwin 1861, p.  xiii (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F381& viewtype=text& pageseq=20)
    [49] Darwin 1866, p.  xiv (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F385& pageseq=21)
    [50] Bowler 2003, p. 151
    [51] Darwin 1859, pp.  62 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=77)
    [52] Matthew, Patrick (1860). "Nature's law of selection. Gardeners' Chronicle and Agricultural Gazette" (http:/ / darwin-online. org. uk/ content/
        frameset?itemID=A143& viewtype=text& pageseq=1). The Complete Works of Charles Darwin Online. . Retrieved 2007-11-01.
    [53] Darwin 1861, p.  xiv (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F381& viewtype=text& pageseq=21)
    [54] Bowler 2003, p. 158
    [55] Huxley, Thomas Henry (1895). "The Reception of the Origin of Species" (http:/ / infomotions. com/ etexts/ gutenberg/ dirs/ etext00/
        oroos10. htm). Project Gutenberg. . Retrieved 2007-11-02.
    [56] Bowler & Morus 2005, pp. 129–149
    [57] Larson 2004, pp. 55–71
    [58] Bowler 2003, pp. 173–176
    [59] Larson 2004, p. 50
    [60] The centrality of Origin of Species in the rise of widespread evolutionary thinking has been has long been accepted by historians of science.
        However, some scholars have recently begun to challenge this idea. James A. Secord, in his study of the impact of Vestiges of the Natural
        History of Creation, argues that in some ways Vestiges had as much or more impact than Origin, at least into the 1880s. Focusing so much on
        Darwin and Origin, he argues, "obliterates decades of labor by teachers, theologians, technicians, printers, editors, and other researchers,
History of evolutionary thought                                                                                                                            111
        whose work has made evolutionary debates so significant during the past two centuries." Secord 2000, pp. 515–518
    [61] Larson 2004, pp. 79–111
    [62] Larson 2004, pp. 139–40
    [63] Larson 2004, pp. 109–110
    [64] Bowler 2003, pp. 190–191
    [65] Bowler 2003, pp. 177–223
    [66] Larson 2004, pp. 121–123, 152–157
    [67] Bowler 2003, pp. 207–216
    [68] Bowler 2003, pp. 49–51
    [69] Larson 2004, pp. 105–129
    [70] Bowler 2003, pp. 196–253
    [71] Bowler 2003, pp. 256–273
    [72] Larson 2004, pp. 153–174
    [73] Bowler 2003, pp. 325–339
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History of evolutionary thought                                                                                          113
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History of evolutionary thought                                                                                                114
    External links
    • UC Berkeley's History of Evolutionary Thought (http://evolution.berkeley.edu/evolibrary/article/history_01)
    • Darwin's precursors and influences by John Wilkins (http://www.talkorigins.org/faqs/darwin-precursors.
      html). Part of the Talk.Origins Archive.
    • The Alfred Russel Wallace Page (http://www.wku.edu/~smithch/index1.htm)
    Lamarckism
    Lamarckism (or Lamarckian inheritance) is the idea that an organism can pass on characteristics that it acquired
    during its lifetime to its offspring (also known as heritability of acquired characteristics or soft inheritance). It is
    named after the French biologist Jean-Baptiste Lamarck (1744–1829), who incorporated the action of soft
    inheritance into his evolutionary theories. He is often incorrectly cited as the founder of soft inheritance, which
    proposes that individual efforts during the lifetime of the organisms were the main mechanism driving species to
    adaptation, as they supposedly would acquire adaptive changes and pass them on to offspring. After publication of
    Charles Darwin's theory of natural selection, the importance of individual efforts in the generation of adaptation was
    considerably diminished. Later, Mendelian genetics supplanted the notion of inheritance of acquired traits,
    eventually leading to the development of the modern evolutionary synthesis, and the general abandonment of the
    Lamarckian theory of evolution in biology. In a wider context, soft inheritance is of use when examining the
    evolution of cultures and ideas, and is related to the theory of Memetics.
    History
    Between 1794 and 1796 Erasmus Darwin wrote Zoönomia suggesting
    "that all warm-blooded animals have arisen from one living filament...
    with the power of acquiring new parts" in response to stimuli, with
    each round of "improvements" being inherited by successive
    generations. Subsequently Jean-Baptiste Lamarck repeated in his
    Philosophie Zoologique of 1809 the folk wisdom that characteristics
    which were "needed" were acquired (or diminished) during the lifetime
    of an organism then passed on to the offspring. He incorporated this
    mechanism into his thoughts on evolution, seeing it as resulting in the
    adaptation of life to local environments.
    The Vestiges of the Natural History of Creation, authored by Robert Chambers in St Andrews and published
    anonymously in England in 1844, proposed a theory which combined radical phrenology with Lamarckism, causing
    political controversy for its radicalism and unorthodoxy, but exciting popular interest and preparing a huge and
    prosperous audience for Darwin.
Lamarckism                                                                                                                       115
    Darwin's Origin of Species proposed natural selection as the main mechanism for development of species, but did
    not rule out a variant of Lamarckism as a supplementary mechanism.[1] Darwin called his Lamarckian hypothesis
    Pangenesis, and explained it in the final chapter of his book Variation in Plants and Animals under Domestication,
    after describing numerous examples to demonstrate what he considered to be the inheritance of acquired
    characteristics. Pangenesis, which he emphasised was a hypothesis, was based on the idea that somatic cells would,
    in response to environmental stimulation (use and disuse), throw off 'gemmules' or 'pangenes' which travelled around
    the body (though not necessarily in the bloodstream). These pangenes were microscopic particles that supposedly
    contained information about the characteristics of their parent cell, and Darwin believed that they eventually
    accumulated in the germ cells where they could pass on to the next generation the newly acquired characteristics of
    the parents. Darwin's half-cousin, Francis Galton carried out experiments on rabbits, with Darwin's cooperation, in
    which he transfused the blood of one variety of rabbit into another variety in the expectation that its offspring would
    show some characteristics of the first. They did not, and Galton declared that he had disproved Darwin's hypothesis
    of Pangenesis, but Darwin objected, in a letter to Nature, that he had done nothing of the sort, since he had never
    mentioned blood in his writings. He pointed out that he regarded Pangenesis as occurring in Protozoa and plants,
    which have no blood.[2] With the development of the modern synthesis of the theory of evolution and a lack of
    evidence for either a mechanism or even the heritability of acquired characteristics, Lamarckism largely fell from
    favor.
    In the 1920s, experiments by Paul Kammerer on amphibians, particularly the midwife toad, appeared to find
    evidence supporting Lamarckism, but his specimens with supposedly-acquired black foot-pads were found to have
    been tampered with. In The Case of the Midwife Toad Arthur Koestler surmised that the specimens had been faked
    by a Nazi sympathiser to discredit Kammerer for his political views.
    A form of Lamarckism was revived in the Soviet Union of the 1930s when Trofim Lysenko promoted Lysenkoism
    which suited the ideological opposition of Joseph Stalin to Genetics. This ideologically driven research influenced
    Soviet agricultural policy which in turn was later blamed for crop failures.
    Since 1988 certain scientists have produced work proposing that Lamarckism could apply to single celled organisms.
    A version of Lamarckian acquisition in higher order animals is still posited in certain branches of psychology, as, for
    example, in the Jungian racial memory.
    Neo-Lamarckism is a theory of inheritance based on a modification and extension of Lamarckism, essentially
    maintaining the principle that genetic changes can be influenced and directed by environmental factors.
    Lamarck's theory
    The identification of Lamarckism with the inheritance of acquired
    characteristics is regarded by some as an artifact of the subsequent
    history of evolutionary thought, repeated in textbooks without analysis.
    Stephen Jay Gould wrote that late 19th century evolutionists "re-read
    Lamarck, cast aside the guts of it ... and elevated one aspect of the
    mechanics - inheritance of acquired characters - to a central focus it
    never had for Lamarck himself."[3] He argued that "the restriction of
    "Lamarckism" to this relatively small and non-distinctive corner of
    Lamarck's thought must be labelled as more than a misnomer, and
    truly a discredit to the memory of a man and his much more                     The evolution of necks is often used as the
                                                                                    example in explanations of Lamarckism.
    comprehensive system"[4] . Gould advocated defining "Lamarckism"
    more broadly, in line with Lamarck's overall evolutionary theory.
    Lamarck incorporated two ideas into his theory of evolution, in his day considered to be generally true:
Lamarckism                                                                                                                   116
    1. Use and disuse – Individuals lose characteristics they do not require (or use) and develop characteristics that are
       useful.
    2. Inheritance of acquired traits – Individuals inherit the traits of their ancestors.
    Examples of what is traditionally called "Lamarckism" would include:
    • Giraffes stretching their necks to reach leaves high in trees (especially Acacias), strengthen and gradually
      lengthen their necks. These giraffes have offspring with slightly longer necks (also known as "soft inheritance").
    • A blacksmith, through his work, strengthens the muscles in his arms. His sons will have similar muscular
      development when they mature.
    With this in mind, Lamarck has been credited in some textbooks and popular culture with developing two laws:
    1. In every animal which has not passed the limit of its development, a more frequent and continuous use of any
       organ gradually strengthens, develops and enlarges that organ, and gives it a power proportional to the length of
       time it has been so used; while the permanent disuse of any organ imperceptibly weakens and deteriorates it, and
       progressively diminishes its functional capacity, until it finally disappears.
    2. All the acquisitions or losses wrought by nature on individuals, through the influence of the environment in which
       their race has long been placed, and hence through the influence of the predominant use or permanent disuse of
       any organ; all these are preserved by reproduction to the new individuals which arise, provided that the acquired
       modifications are common to both sexes, or at least to the individuals which produce the young.[5]
    In essence, a change in the environment brings about change in "needs" (besoins), resulting in change in behavior,
    bringing change in organ usage and development, bringing change in form over time — and thus the gradual
    transmutation of the species.
    However, as historians of science such as Michael Ghiselin and Stephen Jay Gould have pointed out, none of these
    views were original to Lamarck.[6] [7] On the contrary, Lamarck's contribution was a systematic theoretical
    framework for understanding evolution. He saw evolution as comprising two processes;
    1. Le pouvoir de la vie (a complexifying force) - in which the natural, alchemical movements of fluids would etch
       out organs from tissues, leading to ever more complex construction regardless of the organ's use or disuse. This
       would drive organisms from simple to complex forms.
    2. L'influence des circonstances (an adaptive force) - in which the use and disuse of characters led organisms to
       become more adapted to their environment. This would take organisms sideways off the path from simple to
       complex, specialising them for their environment.
    who have experienced starvation, where epigenetic factors have altered the functioning of genes[10] . These changed
    epigenetic factors appear to show traits in the next generation such as an increased occurrence of diabetes. The
    process of methylation is thought to be behind such changes.
    In October 2010, further evidence linking food intake to traits inherited by the offspring were shown in a study of
    rats conducted by several Australian universities[11] . The study strongly suggested that fathers can transfer a
    propensity for obesity to their daughters as a result of the fathers' food intake, and not their genetics (or specific
    genes), prior to the conception of the daughter. A "paternal high-fat diet" was shown to cause cell dysfunction in the
    daughter, which in turn led to obesity for the daughter.
    Several historians have argued that Lamarck's name is linked somewhat unfairly to the theory that has come to bear
    his name, and that Lamarck deserves credit for being an influential early proponent of the concept of biological
    evolution, far more than for the mechanism of evolution, in which he simply followed the accepted wisdom of his
    time. Lamarck died 30 years before the first publication of Charles Darwin's Origin of Species. According to Stephen
    Jay Gould, if Lamarck had been aware of Darwin's proposed mechanism of natural selection, there is no reason to
    assume he would not have accepted it as a more likely alternative to his own mechanism. Note also that Darwin, like
    Lamarck, lacked a plausible alternative mechanism of inheritance - the particulate nature of inheritance was only
    observed by Gregor Mendel somewhat later, and published in 1866. Its full significance was not appreciated until the
    Modern evolutionary synthesis in the early 1920s. An important point in its favour at the time was that Lamarck's
    theory contained a mechanism describing how variation is maintained, which Darwin’s own theory lacked.
    Several recent studies, one conducted by researchers at MIT and another by researchers at the Tufts University
    School of Medicine, have rekindled the debate once again. As reported [12] in MIT's Technology Review in February
    2009, "The effects of an animal's environment during adolescence can be passed down to future offspring ... The
    findings provide support for a 200-year-old theory of evolution that has been largely dismissed: Lamarckian
    evolution, which states that acquired characteristics can be passed on to offspring."
    Neo-Lamarckism
    Unlike neo-Darwinism, the term neo-Lamarckism refers more to a loose grouping of largely heterodox theories and
    mechanisms that emerged after Lamarck's time, than to any coherent body of theoretical work.
    In the 1920s, Harvard University researcher William McDougall studied the abilities of rats to correctly solve mazes.
    He found that children of rats that had learned the maze were able to run it faster. The first rats would get it wrong
    165 times before being able to run it perfectly each time, but after a few generations it was down to 20. McDougall
    attributed this to some sort of Lamarckian evolutionary process.[13] Oscar Werner Tiegs and Wilfred Eade Agar later
    showed McDougall's results to be incorrect, caused by poor experimental controls.[14] [15] [16] [17] [18]
    At around the same time, Ivan Pavlov, who was also a Lamarckist, claimed to have observed a similar phenomenon
    in animals being subject to conditioned reflex experiments. He claimed that with each generation, the animals
    became easier to condition. However, Pavlov never suggested a mechanism to explain these observations.
    Soma to germ-line feedback
    In the 1970s the immunologist Ted Steele, formerly of the University of Wollongong, and colleagues, proposed a
    neo-Lamarckian mechanism to try to explain why homologous DNA sequences from the VDJ gene regions of parent
    mice were found in their germ cells and seemed to persist in the offspring for a few generations. The mechanism
    involved the somatic selection and clonal amplification of newly acquired antibody gene sequences that were
    generated via somatic hyper-mutation in B-cells. The mRNA products of these somatically novel genes were
    captured by retroviruses endogenous to the B-cells and were then transported through the blood stream where they
    could breach the soma-germ barrier and retrofect (reverse transcribe) the newly acquired genes into the cells of the
    germ line. Although Steele was advocating this theory for the better part of two decades, little more than indirect
    evidence was ever acquired to support it. An interesting attribute of this idea is that it strongly resembles Darwin's
Lamarckism                                                                                                                   118
    own theory of pangenesis, except in the soma to germ line feedback theory, pangenes are replaced with realistic
    retroviruses.[19]
    Epigenetic inheritance
    Forms of 'soft' or epigenetic inheritance within organisms have been suggested as neo-Lamarckian in nature by such
    scientists as Eva Jablonka and Marion J. Lamb. In addition to 'hard' or genetic inheritance, involving the duplication
    of genetic material and its segregation during meiosis, there are other hereditary elements that pass into the germ
    cells also. These include things like methylation patterns in DNA and chromatin marks, both of which regulate the
    activity of genes. These are considered "Lamarckian" in the sense that they are responsive to environmental stimuli
    and can differentially affect gene expression adaptively, with phenotypic results that can persist for many
    generations in certain organisms. Although the reality of epigenetic inheritance is not doubted (as countless
    experiments have validated it), its significance to the evolutionary process is uncertain. Most neo-Darwinians
    consider epigenetic inheritance mechanisms to be little more than a specialized form of phenotypic plasticity, with
    no potential to introduce evolutionary novelty into a species lineage.[20]
    selection pressures based on their ability to differentially influence Human minds, memes can be modified and the
    effects of that modification passed on. Richard Dawkins notes (in Blackmore 2000: The Meme machine, page 13),
    that Memes can be copied in a Lamarckian way (copying of the product) or in a Weismann-type evolutionary way
    (copying of the instruction) which is much more resistant against changes.
    See also
    •   Jean-Baptiste Lamarck
    •   Baldwinian evolution
    •   Darwinism
    •   Epigenetic inheritance
    •   Epigenetics
    •   Evolution
    •   Inheritance of acquired characters
    •   Lysenkoism
    •   Memetics
    •   Obsolete scientific theories
    •   Orthogenesis
    •   Marcus Pembrey
    •   Racial memory
    •   Ted Steele
    •   History of evolutionary thought
    •   Eclipse of Darwinism
    Notes
    [1] Desmond, A. & Moore, J. (1991) Darwin Penguin Books p.617 "Darwin was loathe to let go of the notion that a well-used and strengthened
        organ could be inherited"
    [2] Charles Darwin (27 April 1871). "Pangenesis" (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F1751&
        pageseq=1). Nature. A Weekly Illustrated Journal of Science. pp. 502–503. . Retrieved 2007-11-08.
    [3] Gould, Stephen J. "Shades of Lamarck", reprinted in The Panda's Thumb (1980) pp.65-71. Quote from page 66.
    [4] Gould, Stephen J. (2002). The Structure of Evolutionary Theory. Harvard: Belknap Harvard. pp. 177–178. ISBN 0-674-00613-5.
    [5] Jean-Baptiste Lamarck Zoological Philosophy trans. Hugh Elliot, U. Chicago Press, 1984, p.113
    [6] The Imaginary Lamarck: a look at bogus "history" in schoolbooks (http:/ / www. textbookleague. org/ 54marck. htm) by Michael Ghiselin
    [7] Gould, S.J. (2002) The Structure of Evolutionary Theory
    [8] http:/ / www. plosone. org/ article/ info:doi/ 10. 1371/ journal. pone. 0006405
    [9] Richards EJ (2006) Inherited epigenetic variation–revisiting soft inheritance. Nat Rev Genet 7(5): 395–401.
    [10] http:/ / cat. inist. fr/ ?aModele=afficheN& cpsidt=3596539
    [11] http:/ / www. nature. com/ nature/ journal/ v467/ n7318/ full/ nature09491. html
    [12] http:/ / www. technologyreview. com/ biomedicine/ 22061
    [13] McDougall, 1938. British Journal of Psychology 28:321-345
    [14] Pantin, C F A (November 1957). "Oscar Werner Tiegs". Biographical Memiors of Fellows of the Royal Society (The Royal Society) 3: 247.
    [15] W E Agar, F H Drummond (1935). "First report on a test of McDougall's Lamarckian experiment on the training of rats". Journal of
        Experimental Biology 12: 191.
    [16] W E Agar, F H Drummond (1942). "Second report on a test of McDougall's Lamarckian experiment on the training of rats". Journal of
        Experimental Biology 19: 158.
    [17] W E Agar, F H Drummond (1948). "Third report on a test of McDougall's Lamarckian experiment on the training of rats". Journal of
        Experimental Biology 25: 103.
    [18] W E Agar, F H Drummond, M M Gunson (1954). "Fourth (final) report on a test of McDougall's Lamarckian experiment on the training of
        rats". Journal of Experimental Biology 31: 308.
    [19] Lamarck's Signature: how retrogenes are changing Darwin's natural selection paradigm. Edward J. Steele, Robyn A. Lindley, Robert V.
        Blanden. Perseus Books, 1998
    [20] Epigenetic Inheritance and Evolution: The Lamarckian Dimension. Eva Jablonka, Marion J. Lamb. Oxford University Press, 1995
    [21] Adaptive mutation Genetics, Vol. 148, April 1998
Lamarckism                                                                                                              120
    [22] http:/ / www. mun. ca/ biochem/ courses/ 4103/ topics/ adaptive_mutation. html Adaptive mutation in bacteria
    [23] Adaptive mutation in E. coli, Journal of Bacteriology, August 2004, Vol. 186, No. 15
    [24] Lamarckism and prions, New Scientist, 21 August 2004, Issue #2461
    Further references
    • Burkeman, Oliver. Why everything you've been told about evolution is wrong (http://www.guardian.co.uk/
      science/2010/mar/19/evolution-darwin-natural-selection-genes-wrong), The Guardian, March 19, 2010.
    • Desmond, Adrian (1989). The Politics of Evolution: Morphology, Medicine, and Reform in Radical London.
      Chicago: University of Chicago Press. ISBN 0-226-14374-0.
    • Gould, Stephen J. (2002). The Structure of Evolutionary Theory. Harvard: Belknap Harvard. pp. 170–197 on
      Lamarck. ISBN 0-674-00613-5.
    • Medawar, Peter (1959). "The threat and the glory". BBC Reith Lectures No. 6.
    • Molino, Jean (2000). "Toward an Evolutionary Theory of Music and Language". In Brown, Merker & Wallin
      (Eds.), The Origins of Music, ISBN 0-262-23206-5.
    • Waddington, Conrad (1961). "The human evolutionary system". In: Michael Banton (Ed.), Darwinism and the
      Study of Society. London: Tavistock.
    • Cairns, J., J. Overbaugh, and S. Miller. 1988. Nature 335: 142-145
    • Culotta, Elizabeth; "A Boost for 'Adaptive' Mutation", Science, 265:318, 1994.
    • Vetsigian K, Woese C, Goldenfeld N. 2006. "Collective Evolution and the Genetic Code." PNAS 103:
      10696-10701.
    • Hall Barry G., Adaptive Evolution That Requires Multiple Spontaneous Mutations. I. Mutations Involving an
      Insertion Sequence (http://www.genetics.org/cgi/reprint/120/4/887.pdf)
    External links
    • Nonsense in Schoolbooks - The Imaginary Lamarck (http://www.textbookleague.org/54marck.htm):Michael
      T. Ghiselin recounts Lamarck's times and writings.
    • Jean-Baptiste Lamarck : works and heritage (http://www.lamarck.cnrs.fr/?lang=en): an English/French web
      site edited by Pietro Corsi (Oxford Univ.) and realised by CNRS (France - IT team of CRHST). This web site
      contents all books, texts, manuscripts and the lamarck's herbarium.
    • Guralnick, Rob, et. al (2006). "Jean-Baptiste Lamarck (1744-1829)" (http://www.ucmp.berkeley.edu/history/
      lamarck.html). A History of Evolutionary Thought. University of California Museum of Paleontology. Retrieved
      3 July 2010.
    • The Sins of the Fathers, Take 2 (http://www.newsweek.com/id/180103/output/print): "At tributes to Darwin,
      Lamarckism — inheritance of acquired traits — will be the skunk at the party." By Sharon Begley, Newsweek.
      From the magazine issue dated January 26, 2009.
Saltationism                                                                                                                    121
    Saltationism
    In biology, saltation (from Latin, saltus, "leap") is a sudden change from one generation to the next, that is large, or
    very large, in comparison with the usual variation of an organism. The term is used for occasionally hypothesized,
    nongradual changes (especially single-step speciation) that are atypical of, or violate, standard concepts - gradualism
    - involved in neo-Darwinian evolution.
    Saltation does not fit into contemporary evolutionary theory, but there are some prominent proponents, including
    Carl Woese. Woese, and colleagues, suggested that the absence of RNA signature continuum between domains of
    bacteria, archaea, and eukarya constitutes a primary indication that the three primary organismal lineages
    materialized via one or more major evolutionary saltations from some universal ancestral state involving dramatic
    change in cellular organization that was significant early in the evolution of life, but in complex organisms gave way
    to the generally accepted Darwinian mechanisms.[1]
    Polyploidy (most common in plants but not unknown in animals) is considered a type of saltation [2] , even though
    most polyploid individuals are sterile. Polyploidy meets the basic criteria of saltation in that a significant change (in
    gene numbers) results in speciation in just one generation. Mammalian liver cells are typically polyploidal, but they
    are not part of the germ line.
    Punctuated Equilibrium
    It is a popular misconception that punctuated equilibrium is a saltationist theory, often mistaken for Richard
    Goldschmidt's hypothesis of "Hopeful Monsters."[3] However, punctuated equilibrium refers instead to a pattern of
    evolution where most speciation occurs relatively rapidly from a geological perspective (tens of thousands of years
    instead of millions of years), but through neo-Darwinian evolution, not by saltations.
    Pop culture
    In popular culture, a form of saltation appears to have emerged from misconceptions over currently accepted theories
    of evolution (the X-men and its various spin-offs being the most egregious examples). It was also fictionalized in
    Greg Bear's novel, Darwin's Radio.
    The Teenage Mutant Ninja Turtles ( and many other, similar science-fiction pieces ) are not examples of
    saltationism, however. A saltation would be a substantial change that takes place during reproduction; a case when a
    child belongs to a different species than its parents - between generations, not during a generation.
    See also
    •   Catastrophism
    •   Phyletic gradualism
    •   Rapid modes of evolution
    •   The Blind Watchmaker
    •   History of evolutionary thought
    •   Eclipse of Darwinism
Saltationism                                                                                                                                            122
    Orthogenesis
    Orthogenesis, orthogenetic evolution, progressive evolution or autogenesis, is the hypothesis that life has an
    innate tendency to move in an unilinear fashion due to some internal or external "driving force". The hypothesis is
    based on essentialism and cosmic teleology and proposes an intrinsic drive which slowly transforms species. George
    Gaylord Simpson (1953) in an attack on orthogenesis called this mechanism "the mysterious inner force".[1] Classic
    proponents of orthogenesis have rejected the theory of natural selection as the organising mechanism in evolution,
    and theories of speciation for a rectilinear model of guided evolution acting on discrete species with "essences". The
    term orthogenesis was popularised by Theodor Eimer, though many of the ideas are much older (Bateson 1909).[2]
    No Goal
    Orthogenesis does not postulate a "goal" for evolution. Though it proceeds in a linear fashion driven by some
    internal mechanism, it does not have a goal.
    Many sources mix this heterodox view of evolution with another—- that evolution is proceeding to some long term
    or ultimate goal; the result are definitions that state "orthogenesis proposes that evolution moves in a unilinear
    fashion towards a perfect goal". While it is true that early and famous examples of orthogenesis often conflated these
    two ideas (e.g. Jean-Baptiste Lamarck's theory of evolution), it is important to recognize that these are in fact two
    separate ideas that are rejected by mainstream science; the latter idea of goal-oriented evolution is better understood
    as a form of teleology.
    The distinction can be seen when we recognize that orthogenesis is inherent in the theories of German biologist Ernst
    Haeckel and American paleontologist Richard Swann Lull. Both scientists proposed mechanisms whereby evolution
    proceeded in unilinear fashion, but neither saw goals (instead they made pseudo-scientific appeals to unknown
    genetic driving processes).
    This is important because similar flaws occur recurrently at the fringes of science, typically taking the form of
    mysterious molecular drives that supposedly are pushing phenotypic evolution in certain directions or forcing the
    formation of new species.
    Origins
    The orthogenesis hypothesis had a significant following in the 19th century when a number of evolutionary
    mechanisms, such as Lamarckism, were being proposed. Jean-Baptiste Lamarck himself accepted the idea, and it had
    a central role in his theory of inheritance of acquired characteristics, the hypothesised mechanism of which
    resembled the "mysterious inner force" of orthogenesis. Other proponents of orthogenesis included Leo Berg,
    philosopher Henri Bergson and, for a time, the paleontologist Henry Fairfield Osborn. Orthogenesis was particularly
    accepted by paleontologists who saw in their fossils a directional change, and in invertebrate paleontology thought
    there was a gradual and constant directional change. Those who accepted orthogenesis in this way, however, did not
Orthogenesis                                                                                                                                         123
    necessarily accept that the mechanism that drove orthogenesis was teleological. In fact, Darwin himself rarely used
    the term "evolution" now so commonly used to describe his theory, because in Darwin's time, evolution usually was
    associated with some sort of progressive process like orthogenesis, and this had been common usage since at least
    1647.[3]
Comparison of Theories
   Mechanism     Short-sighted Natural Selection sorting    Intrinsic drive towards perfection;     Intrinsic drive towards perfection and
                 random genetic variation, no other         natural selection unimportant.          inheritance of acquired characteristics (both
                 guidance or aim. Selected traits are       Characters produced may be totally      are Lamarckian principles); natural selection
                 adaptive, i.e. have some survival value.   non-adaptive, i.e. have no survival     adopted by some in latter years.
                                                            value.
   Common        Yes, new species coming into existence     No, speciation rejected or considered   Depends upon source quoted. Signs that
   descent       by speciation events.                      unimportant in long term trends;        species shared a common ancestor were
                                                            spontaneous generation of new species   detected before Darwin, but in absence of a
                                                            resulting in parallel evolution.        mechanism some still rejected the idea.
   Status        Prevailing in modified form as modern      Refuted by Charles Darwin's Origin of   Declined after the Origin, though the
                 evolutionary synthesis.                    Species and the modern evolutionary     mechanism was not refuted until the modern
                                                            synthesis.                              evolutionary synthesis in which it was
                                                                                                    established that the mechanism does not exist.
                beginning). On the other hand, dislike of mystical interpretations of natural facts has driven many
                capable naturalists to another extreme and has led them to insist on the all-powerfulness of natural
                selection and on the complete indefiniteness of variation. The apparent opposition between the
                conflicting schools is more acute than the facts justify.... there is no connection between the appearance
                of the variation and the use to which it may be put... in one sense it is a mere coincidence if a particular
                variation turn out to be useful. But there are several directions in which the field of variation appears to
                be not only limited but defined in a certain direction. Obviously variations depend on the constitution of
                the varying organism; a modification, whether it be large or small, is a modification of an already
                definite and limited structure.... A continuous environment both from the point of view of production of
                variation and selection of variation would appear necessarily to result in a series with the appearance of
                orthogenesis. The past history of the organic world displays many successful series and these, as they
                have survived, must inevitably display orthogenesis to some extent; but it also displays many failures
                which indeed may be regarded as showing that the limitation of variation has been such that the
                organisms have lost the possibility of successful response to a new environment.[4]
          A few hung on to the orthogenesis hypothesis as late as the 1950s by claiming that the processes of
          macroevolution, the long term trends in evolution, were distinct from the processes of microevolution (genetic
          variation and natural selection) which were by then well understood and it was known they could not behave
          in an orthogenetic manner. Teilhard de Chardin, a Jesuit paleontologist, in The Phenomenon of Man (a book
          influential among non-scientists that was published four years after his death in 1959) argued for evolution
          aiming for the "Omega Point", while putting man at the center of the universe and accounting for original sin
          (Dennett 1995, von Kitzing 1998). The term Chardin used for this was "directed additivity". This form of
          orthogenesis has now also been abandoned as more about evolutionary processes has been discovered
          (Wilkins 1997). The refutation of orthogenesis had some ramifications in the field of philosophy, as it refuted
          the idea of teleology as first postulated by Aristotle and accepted by Immanuel Kant, who had greatly
          influenced many scientists. Before the scientific and philosophical revolution that began with Charles Darwin's
          ideas, the prevailing philosophy was that the world was teleological and purposeful, and that science was the
          study of God's creation. The refutation of these concepts have led to a shift in what science and scientists are
          perceived to be.
    See also
    •   Facilitated variation
    •   Evolution of complexity
    •   Eclipse of Darwinism
    •   History of evolutionary thought
    •   Law of Complexity/Consciousness
    References
    [1] George Gaylord Simpson, Life of the Past: An Introduction to Paleontology, Yale University Press, New Haven, 1953, p. 125.
    [2] The evolutionary future of man: A biological view of progress (http:/ / www. simonyi. ox. ac. uk/ dawkins/ WorldOfDawkins-archive/
        Dawkins/ Work/ Articles/ 1993-09-11future. shtml)
    [3] Darwin's Dilemma: The Odyssey of Evolution (http:/ / web. archive. org/ web/ 20051216025526/ http:/ / wordorigins. org/ wordore.
        htm#evolution), Stephen Jay Gould, an essay in Ever Since Darwin: Reflections in Natural History, W. W. Norton, 1977, ISBN
        0-393-06425-5
    [4] The Encyclopaedia Britannica: A Dictionary of Arts, Sciences, Literature and General Information, Eleventh Edition, Copyright in all
        countries subscribing the Berne Convention by the Chancellor, Masters and Scholars of the University of Cambridge, Copyright in the United
        States of America by the Encyclopaedia Britannica Company, London, May 31, 1911.
    Sources
    1. Bateson, William, 1909. Heredity and variation in modern lights, in Darwin and Modern Science (A.C. Seward
       ed.). Cambridge University Press. Chapter V. E-book (http://www.gutenberg.net/etext/1909).
    2. Dennett, Daniel, 1995. Darwin's Dangerous Idea. Simon & Schuster.
    3. Huxley, Julian, 1942. The Modern Evolutionary Synthesis, London: George Allen and Unwin.
    4. Jacobs, Susan C., Allan Larson & James M. Cheverud, 1995. Phylogenetic Relationships and Orthogenetic
       Evolution of Coat Color Among Tamarins (Genus Saguinus). Syst. Biol. 44(4):515—532, Abstract (http://
       hydrodictyon.eeb.uconn.edu/systbiol/issues/44_4/44_4abstracts.html#Jacobs).
    5. Mayr, Ernst, 2002. What Evolution Is, London: Weidenfeld and Nicolson.
    6. Simpson, George G., 1957. Life Of The Past: Introduction to Paleontology. Yale University Press, p.119.
    7. Wilkins, John, 1997. What is macroevolution?. TalkOrigins Archive (http://www.talkorigins.org/faqs/
       macroevolution.html) (14:08 UTC, Oct 13 2004)
    8. Woodley, Michael A., 2006. The Limits of Ecology: New Perspectives from a Theoretical Borderland. Abramis
       Academic Press.
''On the Origin of Species''                                                                                                           126
Language English
    Publication                         [2]
                     24 November 1859
    date
Pages 502
ISBN N/A
    Preceded by      On the Tendency of Species to form Varieties; and on the Perpetuation of Varieties and Species by Natural Means
                     of Selection
     Charles Darwin's On the Origin of Species, published on 24 November 1859, is a work of scientific literature which
     is considered to be the foundation of evolutionary biology. Its full title was On the Origin of Species by Means of
     Natural Selection, or the Preservation of Favoured Races in the Struggle for Life. For the sixth edition of 1872,
     the short title was changed to The Origin of Species. Darwin's book introduced the scientific theory that populations
     evolve over the course of generations through a process of natural selection. It presented a body of evidence that the
     diversity of life arose by common descent through a branching pattern of evolution. Darwin included evidence that
     he had gathered on the Beagle expedition in the 1830s and his subsequent findings from research, correspondence,
     and experimentation.
     Various evolutionary ideas had already been proposed to explain new findings in biology. There was growing
     support for such ideas among dissident anatomists and the general public, but during the first half of the 19th century
     the English scientific establishment was closely tied to the Church of England, while science was part of natural
     theology. Ideas about the transmutation of species were controversial as they conflicted with the beliefs that species
     were unchanging parts of a designed hierarchy and that humans were unique, unrelated to animals. The political and
     theological implications were intensely debated, but transmutation was not accepted by the scientific mainstream.
''On the Origin of Species''                                                                                                     127
     The book was written for non-specialist readers and attracted widespread interest upon its publication. As Darwin
     was an eminent scientist, his findings were taken seriously and the evidence he presented generated scientific,
     philosophical, and religious discussion. The debate over the book contributed to the campaign by T.H. Huxley and
     his fellow members of the X Club to secularise science by promoting scientific naturalism. Within two decades there
     was widespread scientific agreement that evolution, with a branching pattern of common descent, had occurred, but
     scientists were slow to give natural selection the significance that Darwin thought appropriate. During the "eclipse of
     Darwinism" from the 1880s to the 1930s, various other mechanisms of evolution were given more credit. With the
     development of the modern evolutionary synthesis in the 1930s and 1940s, Darwin's concept of evolutionary
     adaptation through natural selection became central to modern evolutionary theory, now the unifying concept of the
     life sciences.
Background
     In Britain, William Paley's Natural Theology saw adaptation as evidence of beneficial "design" by the Creator acting
     through natural laws. All naturalists in English universities were Church of England clergymen, and science became
     a search for these laws.[12] Geologists adapted catastrophism to show repeated worldwide annihilation and creation
     of new fixed species adapted to a changed environment, initially identifying the most recent catastrophe as the
     biblical flood.[13] Some anatomists such as Robert Grant were influenced by Lamarck and Geoffroy, but most
     naturalists regarded their ideas of transmutation as a threat to divinely appointed social order.[14]
     In late September 1838, he started reading Thomas Malthus's An Essay on the Principle of Population with its
     statistical proof that human populations breed beyond their means and struggle to survive. Darwin related this to the
     struggle for existence among wildlife and botanist de Candolle's "warring of the species" in plants; he immediately
     envisioned "a force like a hundred thousand wedges" pushing well-adapted variations into "gaps in the economy of
     nature", so that the survivors would pass on their form and abilities, and unfavourable variations would be
     destroyed.[25] [26] By December 1838, he had noted a similarity between the act of breeders selecting traits and a
     Malthusian Nature selecting among variants thrown up by "chance" so that "every part of newly acquired structure is
     fully practical and perfected".[27]
     Darwin now had the framework of his theory of natural selection "by which to work",[28] but he was fully occupied
     with his career as a geologist and held off writing a sketch of his theory until his book on The Structure and
     Distribution of Coral Reefs was completed in May 1842.[29] [30]
     Further development
     Darwin continued to research and extensively revise his theory while focusing on his main work of publishing the
     scientific results of the Beagle voyage.[29] He tentatively wrote of his ideas to Lyell in January 1842;[31] then in June
     he roughed out a 35-page "Pencil Sketch" of his theory.[32] Darwin began correspondence about his theorising with
     the botanist Joseph Dalton Hooker in January 1844, and by July had rounded out his "sketch" into a 230-page
     "Essay", to be expanded with his research results and published if he died prematurely.[33]
''On the Origin of Species''                                                                                                     130
     Hooker was persuaded to take away a copy of the "Essay" in January 1847, and eventually sent a page of notes
     giving Darwin much needed feedback. Reminded of his lack of expertise in taxonomy, Darwin began an eight year
     study of barnacles, becoming the leading expert on their classification. Using his theory, he discovered homologies
     showing that slightly changed body parts served different functions to meet new conditions, and he found an
     intermediate stage in the evolution of distinct sexes.[37]
     Darwin's barnacle studies convinced him that variation arose constantly and not just in response to changed
     circumstances. In 1854, he completed the last part of his Beagle-related writing and began working full-time on
     evolution. His thinking changed from the view that species formed in isolated populations only, as on islands, to an
     emphasis on speciation without isolation; that is, he saw increasing specialisation within large stable populations as
     continuously exploiting new ecological niches. He conducted empirical research focusing on difficulties with his
     theory. He studied the developmental and anatomical differences between different breeds of many domestic
     animals, became actively involved in fancy pigeon breeding, and experimented (with the help of his son Francis) on
     ways that plant seeds and animals might disperse across oceans to colonise distant islands. By 1856, his theory was
     much more sophisticated, with a mass of supporting evidence.[37] [38]
''On the Origin of Species''                                                                                                       131
Publication
     Darwin was hard at work on his "big book" on Natural Selection, when on
     18 June 1858 he received a parcel from Wallace, who was working in Borneo. It
     enclosed twenty pages describing an evolutionary mechanism, a response to
     Darwin's recent encouragement, with a request to send it on to Lyell if Darwin
                                                                                                   A photograph of Alfred Russel
     thought it worthwhile. The mechanism was similar to Darwin's own theory.[40]                  Wallace (1823–1913) taken in
     Darwin wrote to Lyell that "your words have come true with a vengeance, ...                        Singapore in 1862
     forestalled" and he would "of course, at once write and offer to send [it] to any
     journal" that Wallace chose, adding that "all my originality, whatever it may amount to, will be smashed".[41] Lyell
     and Hooker agreed that a joint paper should be presented at the Linnean Society, and on 1 July 1858, the papers
     entitled On the Tendency of Species to form Varieties; and on the Perpetuation of Varieties and Species by Natural
     Means of Selection, by Wallace and Darwin respectively, were read out but drew little reaction. While Darwin
     considered Wallace's idea to be identical to his concept of natural selection, historians have pointed out differences.
     Darwin described natural selection as being analogous to the artificial selection practised by animal breeders, and
     emphasised competition between individuals; Wallace drew no comparison to selective breeding, and focused on
     ecological pressures that kept different varieties adapted to local conditions.[42] [43] [44]
     After the meeting, Darwin decided to write "an abstract of my whole work".[45] He started work on 20 July 1858,
     while on holiday at Sandown,[46] and wrote parts of it from memory.[47] Lyell discussed arrangements with publisher
     John Murray III, of the publishing house John Murray,[48] who responded immediately to Darwin's letter of 31
     March 1859[49] with an agreement to publish the book without even seeing the manuscript, and an offer to Darwin of
     2
       ⁄3 of the profits.[50] (eventually Murray paid £180 to Darwin for the 1st edition and by Darwin's death in 1882 the
     book was in its 6th edition, earning Darwin nearly £3000.[51] ) Darwin had initially decided to call it An abstract of
     an Essay on the Origin of Species and Varieties Through natural selection, but with Murray's persuasion it was
     eventually changed to the snappier title: On the Origin of Species, with the title page adding by Means of Natural
     Selection, or the Preservation of Favoured Races in the Struggle for Life.[2] Here the term "races" is used as an
     alternative for "varieties" and does not carry the modern connotation of human races—the first use in the book refers
     to "the several races, for instance, of the cabbage" and proceeds to a discussion of "the hereditary varieties or races of
     our domestic animals and plants".[52]
''On the Origin of Species''                                                                                                   132
                                                    The book was widely translated in Darwin's life time, but problems
                                                    arose with translating concepts and metaphors, and some translations
          American botanist Asa Gray (1810–1888)    were biased by the translator's own agenda.[66] Darwin distributed
                                                    presentation copies in France and Germany, hoping that suitable
     applicants would come forward, as translators were expected to make their own arrangements with a local publisher.
     He welcomed the distinguished elderly naturalist and geologist Heinrich Georg Bronn, but the German translation
     published in 1860 imposed Bronn's own ideas, adding controversial themes that Darwin had deliberately omitted.
     Bronn translated "favoured races" as "perfected races", and added essays on issues including the origin of life, as
     well as a final chapter on religious implications partly inspired by Bronn's adherence to Naturphilosophie.[67] In
     1862, Bronn produced a second edition based on the third English edition and Darwin's suggested additions, but then
     died of a heart attack.[68] Darwin corresponded closely with Julius Victor Carus, who published an improved
     translation in 1867.[69] Darwin's attempts to find a translator in France fell through, and the translation by Clémence
     Royer published in 1862 added an introduction praising Darwin's ideas as an alternative to religious revelation and
     promoting ideas anticipating social Darwinism and eugenics, as well as numerous explanatory notes giving her own
     answers to doubts that Darwin expressed. Darwin corresponded with Royer about a second edition published in 1866
     and a third in 1870, but he had difficulty getting her to remove her notes and was troubled by these editions.[68] [70]
     He remained unsatisfied until a translation by Edmond Barbier was published in 1876.[2] A Dutch translation was
     published in 1860.[71] By 1864, additional translations had appeared in Italian and Russian.[66] In Darwin's lifetime,
     Origin was published in Swedish in 1869, Danish in 1872, Polish in 1873, Hungarian in 1873–1874, Spanish in 1877
     and Serbian in 1878. By 1977, it had appeared in an additional 18 languages.[72]
''On the Origin of Species''                                                                                                          134
Content
     may be justly called an incipient species" and that "species are only strongly marked and permanent varieties".[86] He
     argues for the ubiquity of variation in nature.[87] Historians have noted that naturalists had long been aware that the
     individuals of a species differed from one another, but had generally considered such variations to be limited and
     unimportant deviations from the archetype of each species, that archetype being a fixed ideal in the mind of God.
     Darwin and Wallace made variation among individuals of the same species central to understanding the natural
     world.[83]
the 1930s and 1940s that a model of heredity became completely integrated with a model of variation.[104]
     evolved through natural selection because intermediate stages would not have been adaptive. Darwin proposed
     scenarios for the incremental evolution of each feature.[111]
     Geologic record
     Chapter IX deals with the fact that the geologic record appears to show forms of life suddenly arising, without the
     innumerable transitional fossils expected from gradual changes. Darwin borrowed Charles Lyell's argument in
     Principles of Geology that the record is extremely imperfect as fossilisation is a very rare occurrence, spread over
     vast periods of time; since few areas had been geologically explored, there could only be fragmentary knowledge of
     geological formations, and fossil collections were very poor. Evolved local varieties which migrated into a wider
     area would seem to be the sudden appearance of a new species. Darwin did not expect to be able to reconstruct
     evolutionary history, but continuing discoveries gave him well founded hope that new finds would occasionally
     reveal transitional forms.[112] [113] To show that there had been enough time for natural selection to work slowly, he
     again cited Principles of Geology and other observations based on sedimentation and erosion, including an estimate
     that erosion of The Weald had taken 300 million years.[114] The initial appearance of entire groups of well developed
     organisms in the oldest fossil-bearing layers, now known as the Cambrian explosion, posed a problem. Darwin had
     no doubt that earlier seas had swarmed with living creatures, but stated that he had no satisfactory explanation for the
     lack of fossils.[115] Fossil evidence of pre-Cambrian life has since been found, extending the history of life back for
     billions of years.[116]
     Chapter X examines whether patterns in the fossil record are better explained by common descent and branching
     evolution through natural selection than by the individual creation of fixed species. Darwin expected species to
     change slowly, but not at the same rate – some organisms such as Lingula were unchanged since the earliest fossils.
     The pace of natural selection would depend on variability and change in the environment.[117] This distanced his
     theory from Lamarckian laws of inevitable progress.[112] It has been argued that this anticipated the punctuated
     equilibrium hypothesis,[113] [118] but other scholars have preferred to emphasise Darwin's commitment to
     gradualism.[119] He cited Richard Owen's findings that the earliest members of a class were a few simple and
     generalised species with characteristics intermediate between modern forms, and were followed by increasingly
     diverse and specialised forms, matching the branching of common descent from an ancestor.[112] Patterns of
     extinction matched his theory, with related groups of species having a continued existence until extinction, then not
     reappearing. Recently extinct species were more similar to living species than those from earlier eras, and as he had
     seen in South America, and William Clift had shown in Australia, fossils from recent geological periods resembled
     species still living in the same area.[117]
     Geographic distribution
     Chapter XI deals with evidence from biogeography, starting with the observation that differences in flora and fauna
     from separate regions cannot be explained by environmental differences alone; South America, Africa, and Australia
     all have regions with similar climates at similar latitudes, but those regions have very different plants and animals.
     The species found in one area of a continent are more closely allied with species found in other regions of that same
     continent than to species found on other continents. Darwin noted that barriers to migration played an important role
     in the differences between the species of different regions. The coastal sea life of the Atlantic and Pacific sides of
     Central America had almost no species in common even though the Isthmus of Panama was only a few miles wide.
     His explanation was a combination of migration and descent with modification. He went on to say: "On this principle
     of inheritance with modification, we can understand how it is that sections of genera, whole genera, and even
     families are confined to the same areas, as is so commonly and notoriously the case."[120] Darwin explained how a
     volcanic island formed a few hundred miles from a continent might be colonised by a few species from that
     continent. These species would become modified over time, but would still be related to species found on the
     continent, and Darwin observed that this was a common pattern. Darwin discussed ways that species could be
     dispersed across oceans to colonise islands, many of which he had investigated experimentally.[121]
''On the Origin of Species''                                                                                                  139
     Chapter XII continues the discussion of biogeography. After a brief discussion of freshwater species, it returns to
     oceanic islands and their peculiarities; for example on some islands roles played by mammals on continents were
     played by other animals such as flightless birds or reptiles. The summary of both chapters says:
           ... I think all the grand leading facts of geographical distribution are explicable on the theory of
           migration (generally of the more dominant forms of life), together with subsequent modification and the
           multiplication of new forms. We can thus understand the high importance of barriers, whether of land or
           water, which separate our several zoological and botanical provinces. We can thus understand the
           localisation of sub-genera, genera, and families; and how it is that under different latitudes, for instance
           in South America, the inhabitants of the plains and mountains, of the forests, marshes, and deserts, are in
           so mysterious a manner linked together by affinity, and are likewise linked to the extinct beings which
           formerly inhabited the same continent ... On these same principles, we can understand, as I have
           endeavoured to show, why oceanic islands should have few inhabitants, but of these a great number
           should be endemic or peculiar; ...[122]
     Concluding remarks
     The final chapter reviews points from earlier chapters, and Darwin concludes by hoping that his theory might
     produce revolutionary changes in many fields of natural history. Although he avoids the controversial topic of
     human origins in the rest of the book so as not to prejudice readers against his theory, here he ventures a cautious
     hint that psychology would be put on a new foundation and that "Light will be thrown on the origin of man".[125]
     Darwin ends with a passage that became well known and much quoted:
           It is interesting to contemplate an entangled bank, clothed with many plants of many kinds, with birds
           singing on the bushes, with various insects flitting about, and with worms crawling through the damp
           earth, and to reflect that these elaborately constructed forms, so different from each other, and dependent
           on each other in so complex a manner, have all been produced by laws acting around us ... Thus, from
           the war of nature, from famine and death, the most exalted object which we are capable of conceiving,
           namely, the production of the higher animals, directly follows. There is grandeur in this view of life,
           with its several powers, having been originally breathed into a few forms or into one; and that, whilst
           this planet has gone cycling on according to the fixed law of gravity, from so simple a beginning endless
           forms most beautiful and most wonderful have been, and are being, evolved.[126]
''On the Origin of Species''                                                                                                    140
     Literary style
     The Examiner review of 3 December 1859 commented, "Much of Mr. Darwin's volume is what ordinary readers
     would call 'tough reading;' that is, writing which to comprehend requires concentrated attention and some
     preparation for the task. All, however, is by no means of this description, and many parts of the book abound in
     information, easy to comprehend and both instructive and entertaining."[128] [134]
     While the book was readable enough to sell, its dryness ensured that it was seen as aimed at specialist scientists and
     could not be dismissed as mere journalism or imaginative fiction. Unlike the still-popular Vestiges, it avoided the
     narrative style of the historical novel and cosmological speculation, though the closing sentence clearly hinted at
     cosmic progression. Darwin had long been immersed in the literary forms and practices of specialist science, and
     made effective use of his skills in structuring arguments.[128] David Quammen has described the book as written in
     everyday language for a wide audience, but noted that Darwin's literary style was uneven: in some places he used
     convoluted sentences that are difficult to read; in other places his writing was beautiful. Quammen advised that later
     editions were weakened by Darwin making concessions and adding details to address his critics, and recommended
     the first edition.[135] James T. Costa said that because the book was an abstract produced in haste in response to
     Wallace's essay, it was more approachable than the big book on natural selection Darwin had been working on,
     which would have been encumbered by scholarly footnotes and much more technical detail. He added that parts of
     Origin are dense, but parts are almost lyrical, and the case studies and observations are presented in a narrative style
     unusual in serious scientific books, which broadened its audience.[136]
''On the Origin of Species''                                                                                                          141
     Reception
     The book aroused international interest[138] and a widespread debate,
     with no sharp line between scientific issues and ideological, social and
     religious implications.[139] Much of the initial reaction was hostile, but
     Darwin had to be taken seriously as a prominent and respected name in
     science. There was much less controversy than had greeted the 1844
     publication Vestiges of Creation, which had been rejected by
     scientists,[138] but had influenced a wide public readership into
     believing that nature and human society were governed by natural
     laws.[25] The Origin of Species as a book of wide general interest
     became associated with ideas of social reform. Its proponents made full
     use of a surge in the publication of review journals, and it was given
     more popular attention than almost any other scientific work, though it
     failed to match the continuing sales of Vestiges.[140] Darwin's book
     legitimised scientific discussion of evolutionary mechanisms, and the
     newly coined term Darwinism was used to cover the whole range of
     evolutionism, not just his own ideas. By the mid 1870s, evolutionism          British cartoonists presented Darwin's theory in
     was triumphant.[139]                                                             an unthreatening way. In the 1870s iconic
                                                                                    caricatures of Darwin with an ape or monkey
     With the exception of a brief hint in the final chapter, Darwin had          body emphasised his significance in transforming
                                                                                         ideas, and contributed to widespread
     avoided the subject of human evolution. Despite this, the first review
                                                                                          identification of evolutionism with
     claimed it made a creed of the "men from monkeys" idea from                                               [137]
                                                                                                   Darwinism.
     Vestiges.[141] Human evolution became central to the debate and was
     strongly argued by Huxley who featured it in his popular "working-men's lectures". Darwin did not publish his own
     views on this until 1871.[142] The naturalism of natural selection conflicted with presumptions of purpose in nature
     and while this could be reconciled by theistic evolution, other mechanisms implying more progress or purpose were
     more acceptable. Herbert Spencer had already incorporated Lamarckism into his popular philosophy of progressive
     free market human society. He popularised the terms evolution and survival of the fittest, and many thought Spencer
     was central to evolutionary thinking.[143]
     The leading naturalist in Britain was the anatomist Richard Owen, an idealist who had shifted to the view in the
     1850s that the history of life was the gradual unfolding of a divine plan.[152] Owen's review of the Origin in the April
     1860 Edinburgh Review bitterly attacked Huxley, Hooker and Darwin, but also signalled acceptance of a kind of
     evolution as a teleological plan in a continuous "ordained becoming", with new species appearing by natural birth.
     Others that rejected natural selection, but supported "creation by birth", included the Duke of Argyll who explained
     beauty in plumage by design.[153] Since 1858, Huxley had emphasised anatomical similarities between apes and
     humans, contesting Owen's view that humans were a separate sub-class. Their disagreement over human origins
     came to the fore at the British Association for the Advancement of Science meeting featuring the legendary 1860
     Oxford evolution debate.[154] In two years of acrimonious public dispute that Charles Kingsley satirised as the
     "Great Hippocampus Question" and parodied in The Water-Babies as the "great hippopotamus test", Huxley showed
     that Owen was incorrect in asserting that ape brains lacked a structure present in human brains.[155] Others, including
     Charles Lyell and Alfred Russel Wallace, thought that humans shared a common ancestor with apes, but higher
     mental faculties could not have evolved through a purely material process. Darwin published his own explanation in
     the Descent of Man (1871).[156]
''On the Origin of Species''                                                                                                       143
     Religious attitudes
     The book produced a wide range of religious responses at a time of changing ideas and increasing secularisation. The
     issues raised were complex and there was a large middle ground. Developments in geology meant that there was
     little opposition based on a literal reading of Genesis,[162] but defence of the argument from design and natural
     theology was central to debates over the book in the English speaking world.[163] [164]
                                                            Natural theology was not a unified doctrine, and while some such as
                                                            Louis Agassiz were strongly opposed to the ideas in the book, others
                                                            sought a reconciliation in which evolution was seen as purposeful.[162]
                                                            In the Church of England, some liberal clergymen interpreted natural
                                                            selection as an instrument of God's design, with the cleric Charles
                                                            Kingsley seeing it as "just as noble a conception of Deity".[166] [167] In
                                                            the second edition of January 1860, Darwin quoted Kingsley as "a
                                                            celebrated cleric", and added the phrase "by the Creator" to the closing
                                                            sentence, which from then on read "life, with its several powers,
                                                            having been originally breathed by the Creator into a few forms or into
                                                            one".[168] While some commentators have taken this as a concession to
                                                            religion that Darwin later regretted,[56] Darwin's view at the time was
                                                            of God creating life through the laws of nature,[169] [170] and even in
                                                            the first edition there are several references to "creation".[171]
         The liberal theologian Baden Powell defended
                                                  Baden Powell praised "Mr Darwin's masterly volume [supporting] the
             evolutionary ideas by arguing that the
                                                  grand principle of the self-evolving powers of nature".[172] In America,
       introduction of new species should be considered
                                                    [165]
                                                  Asa Gray argued that evolution is the secondary effect, or modus
        a natural rather than a miraculous process.
                                                  operandi, of the first cause, design,[173] and published a pamphlet
     defending the book in terms of theistic evolution, Natural Selection is not inconsistent with Natural Theology.[166]
     [174] [175]
                 Theistic evolution became a popular compromise, and St. George Jackson Mivart was among those
     accepting evolution but attacking Darwin's naturalistic mechanism. Eventually it was realised that supernatural
     intervention could not be a scientific explanation, and naturalistic mechanisms such as neo-Lamarckism were
     favoured over natural selection as being more compatible with purpose.[162]
     Even though the book had barely hinted at human evolution, it quickly became central to the debate as mental and
     moral qualities were seen as spiritual aspects of the immaterial soul, and it was believed that animals did not have
     spiritual qualities. This conflict could be reconciled by supposing there was some supernatural intervention on the
     path leading to humans, or viewing evolution as a purposeful and progressive ascent to mankind's position at the
     head of nature.[162] While many conservative theologians accepted evolution, Charles Hodge argued in his 1874
     critique "What is Darwinism?" that "Darwinism", defined narrowly as including rejection of design, was atheism
     though he accepted that Asa Gray did not reject design.[176] [177] Asa Gray responded that this charge misrepresented
     Darwin's text.[178] By the early 20th century, four noted authors of The Fundamentals were explicitly open to the
     possibility that God created through evolution,[179] but fundamentalism inspired the American creation–evolution
     controversy that began in the 1920s. Some conservative Roman Catholic writers and influential Jesuits opposed
     evolution in the late 19th and early 20th century, but other Catholic writers, starting with Mivart, pointed out that
     early Church Fathers had not interpreted Genesis literally in this area.[180] The Vatican stated its official position in a
     1950 papal encyclical, which stated that evolution was not inconsistent with Catholic teaching.[181] [182]
''On the Origin of Species''                                                                                                            145
     Modern influence
     Various          alternative     evolutionary
     mechanisms favoured during "the eclipse of
     Darwinism" became untenable as more was
     learned about inheritance and mutation. The
     full significance of natural selection was at
     last accepted in the 1930s and 1940s as part
     of the modern evolutionary synthesis.
     During that synthesis biologists and
     statisticians, including R. A. Fisher, Sewall
     Wright and J.B.S. Haldane, merged
     Darwinian selection with a statistical
     understanding of Mendelian genetics.[161]
     Modern evolutionary theory continues to               A modern phylogenetic tree based on genome analysis shows the three-domain
                                                                                             system.
     develop. Darwin's theory of evolution by
     natural selection, with its tree like model of
     branching common descent, has become the unifying theory of the life sciences. The theory explains the diversity of
     living organisms and their adaptation to the environment. It makes sense of the geologic record, biogeography,
     parallels in embryonic development, biological homologies, vestigiality, cladistics, phylogenetics and other fields,
     with unrivalled explanatory power; it has also become essential to applied sciences such as medicine and
     agriculture.[183] [184] Despite the scientific consensus, a religion-based political controversy has developed over how
     evolution is taught in schools, especially in the United States.[185]
     Interest in Darwin's writings continues, and scholars have generated an extensive literature, the Darwin Industry,
     about his life and work. The text of Origin itself has been subject to much analysis including a variorum, detailing
     the changes made in every edition, first published in 1959,[186] and a concordance, an exhaustive external index
     published in 1981.[187] Worldwide commemorations of the 150th anniversary of the publication of On the Origin of
     Species and the bicentenary of Darwin's birth were scheduled for 2009[188] . They celebrate the ideas which "over the
     last 150 years have revolutionised our understanding of nature and our place within it".[189]
     See also
     • Charles Darwin bibliography
     • The Complete Works of Charles Darwin Online
     • The Descent of Man, and Selection in Relation to Sex, published in 1871 and his second great book on
       evolutionary theory.
     • Transmutation of species
     • Modern evolutionary synthesis
     • History of evolutionary thought
     • History of biology
''On the Origin of Species''                                                                                                                                    146
     Notes
     [1]  Darwin 1859, p.  iii (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=side& itemID=F373& pageseq=8)
     [2]  Freeman 1977
     [3]  Mayr 1982, pp. 479–480
     [4]  Darwin 1872, p.  xiii (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F391& pageseq=18)
     [5]  Aristotle, Physics (http:/ / classics. mit. edu/ Aristotle/ physics. 2. ii. html), translated by Hardie, R. P. and Gayle, R. K. and hosted by MIT's
         Internet Classics Archive, , retrieved 2009-04-23
     [6] Forster & Marston 1999, pp. 26–27
     [7] Bowler 2003, pp. 27, 43, 45
     [8] Bowler 2003, pp. 27–36, 39–42, 57–62, 67, 70, 77–80
     [9] Bowler 2003, pp. 84–90
     [10] Desmond 1989, pp. 47–54
     [11] Bowler 2003, pp. 111–114
     [12] Browne 1995, pp. 91, 129
     [13] Bowler 2003, pp. 115–117
     [14] Desmond & Moore 1991, pp. 34–35
     [15] Browne 1995, pp. 80–88
     [16] Bowler 2003, pp. 148–149
     [17] Browne 1995, pp. 133–140
     [18] Larson 2004, pp. 59–62
     [19] Darwin 1845, pp.  205–208 (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F14& viewtype=text& pageseq=218)
     [20] Browne 1995, pp. 244–250
     [21] Keynes 2000, pp.  xix–xx (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F1840& pageseq=22); Eldredge 2006
     [22] Quammen 2006, pp. 24–25
     [23] Herbert 1980, pp.  7–10 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F1583e& pageseq=9). van Wyhe 2008,
         p. 44; Darwin's Notebook B: Transmutation of species. pp. 1–13, 26, 36, 74 (http:/ / darwin-online. org. uk/ content/
         frameset?viewtype=side& itemID=CUL-DAR121. -& pageseq=1), , retrieved 2009-03-16
     [24] Desmond & Moore 1991, pp. 240–244
     [25] van Wyhe 2009
     [26] Larson 2004, pp. 66–70; Darwin's Notebook D: Transmutation of species. pp. 134–135 (http:/ / darwin-online. org. uk/ content/
         frameset?viewtype=text& itemID=CUL-DAR123. -& pageseq=112), , retrieved 2009-04-08
     [27] Darwin's Notebook E: Transmutation of species. p. 75 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text&
         itemID=CUL-DAR124. -& pageseq=63), , retrieved 2009-03-14
     [28] Darwin 1958, p.  120 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F1497& pageseq=124)
     [29] van Wyhe 2007, pp.  186–187 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=A544& pageseq=10)
     [30] Browne 1995, p. 436
     [31] Desmond & Moore 1991, p. 292
     [32] Browne 1995, pp. 436–437
     [33] van Wyhe 2007, p. 188
     [34] Darwin Correspondence Project – Letter 814—Darwin, C. R. to Hooker, J. D., (7 Jan 1845) (http:/ / www. darwinproject. ac. uk/
         darwinletters/ calendar/ entry-814. html#back-mark-814. f5), , retrieved 2008-11-24
     [35] Browne 1995, pp. 461–465
     [36] Bowler 2003, pp. 135–140
     [37] Bowler 2003, pp. 169–173
         Darwin 1958, pp.  117–121 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F1497& pageseq=121)
     [38] Quammen 2006, pp. 138–142
     [39] Wallace, Alfred R. (1855), "On the law which has regulated the introduction of new species" (http:/ / darwin-online. org. uk/ content/
         frameset?viewtype=text& itemID=A11& pageseq=1), Annals and Magazine of Natural History, including Zoology, Botany, and Geology 16:
         184–196,
     [40] Quammen 2006, pp. 135–158
     [41] Darwin Correspondence Project – Letter 2285—Darwin to Lyell (June 1858) (http:/ / www. darwinproject. ac. uk/ darwinletters/ calendar/
         entry-2285. html), , retrieved 2008-03-15
     [42] Larson 2004, pp. 74–75
     [43] Quammen 2006, pp. 162–163
     [44] Bowler 2003, pp. 175–176
     [45] "Letter 2303 — Darwin, C. R. to Hooker, J. D., 5 July (1858)" (http:/ / www. darwinproject. ac. uk/ entry-2303). Darwin Correspondence
         Project. . Retrieved 2010-09-07.
     [46] Darwin 2006, p.  36 verso (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=side& itemID=CUL-DAR158. 1-76& pageseq=70)
''On the Origin of Species''                                                                                                                                 147
     [47] "Letter 2432 — Darwin, C. R. to Hooker, J. D., 15 Mar (1859)" (http:/ / www. darwinproject. ac. uk/ entry-2432). Darwin Correspondence
         Project. . Retrieved 2010-09-07.
     [48] "Letter 2437 — Darwin, C. R. to Lyell, Charles, 28 Mar (1859)" (http:/ / www. darwinproject. ac. uk/ entry-2437). Darwin Correspondence
         Project. . Retrieved 2010-09-07.
     [49] "Letter 2441 — Darwin, C. R. to Murray, John (b), 31 Mar (1859)" (http:/ / www. darwinproject. ac. uk/ entry-2441). Darwin
         Correspondence Project. . Retrieved 2010-09-07.
     [50] "Letter 2443 — Murray, John (b) to Darwin, C. R., 1 Apr 1859" (http:/ / www. darwinproject. ac. uk/ entry-2443). Darwin Correspondence
         Project. . Retrieved 2010-09-07.
     [51] "Charles Darwin and his publisher" (http:/ / www. darwinproject. ac. uk/ charles-darwin-and-john-murray). Darwin Correspondence Project.
         2010. . Retrieved 2010-09-07.
     [52] Darwin 1859, p.  15 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=30)
     [53] Quammen 2006, pp. 84–92
     [54] van Wyhe 2007
     [55] Darwin 1958, p.  122 (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F1497& viewtype=text& pageseq=126)
     [56] Browne 2002, pp. 95–96
     [57] Darwin 1861, p.  xiii (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F381& viewtype=text& pageseq=20)
     [58] "This survival of the fittest, which I have here sought to express in mechanical terms, is that which Mr. Darwin has called 'natural selection',
         or the preservation of favoured races in the struggle for life." Spencer 1864, pp.  444–445 (http:/ / books. google. co. uk/
         books?id=SRkRAAAAYAAJ& pg=PA444& ci=84,1345,817,57& source=bookclip)
     [59] Mivart 1871
     [60] Used in the transformist sense by Charles Lyell in 1832, Principles of Geology vol 2, p. 11; and previously by Darwin in The Descent of
         Man in 1871.
     [61] Desmond & Moore 1991, pp. 577, 582, 590, 592–593; Freeman 1977
     [62] Darwin Correspondence Project – Letter 2592—Darwin, C. R. to Gray, Asa, 21 Dec (1859) (http:/ / www. darwinproject. ac. uk/
         darwinletters/ calendar/ entry-2592. html#mark-2592. f3), , retrieved 2008-12-06
     [63] Darwin Correspondence Project – Letter 2665—Darwin, C. R. to Gray, Asa, 28 Jan (1860) (http:/ / www. darwinproject. ac. uk/
         darwinletters/ calendar/ entry-2665. html#back-mark-2665. f9), , retrieved 2008-12-06
     [64] Darwin Correspondence Project – Letter 2706—Gray, Asa to Darwin, C. R., 20 Feb 1860 (http:/ / www. darwinproject. ac. uk/
         darwinletters/ calendar/ entry-2706. html), , retrieved 2008-12-06
     [65] Desmond & Moore 1991, p. 492
     [66] Browne 2002, pp. 256–259
     [67] Browne 2002, pp. 140–142
     [68] Darwin Correspondence Project – The correspondence of Charles Darwin, volume 10: 1862 (http:/ / www. darwinproject. ac. uk/ content/
         view/ 28/ 38/ ), , retrieved 2009-03-06
     [69] Darwin Correspondence Project – The correspondence of Charles Darwin, volume 14: 1866 (http:/ / www. darwinproject. ac. uk/ content/
         view/ 32/ 38/ ), , retrieved 2009-03-06
     [70] Browne 2002, pp. 142–144
     [71] Ch. Darwin, Het ontstaan der soorten van dieren en planten door middel van de natuurkeus of het bewaard blijven van bevoorregte rassen
         in de strijd des levens, transl. by T.C. Winkler (Haarlem 1860) Source: Teyler, Winkler, Darwin (http:/ / api. ning. com/ files/
         aT0Fpi7QEAJXZty6RRr0*ayjT5aN-CLIR1HAnom7DRBt*Z64Ko2B*I88LPx*h2otwLvz5Vp*IKVqHQunTD*sItKN3P7MUMve/
         TeylerWinklerDarwin. doc) Lecture by Marijn van Hoorn (http:/ / teylersmuseum. ning. com/ profiles/ blogs/ 142-teyler-winkler-darwin) MA
         at the Congress of the European Botanical and Horticultural Libraries Group, Prague, 23 April 2009
     [72] Freeman 1977, pp.  101–111 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=A1& pageseq=102)
     [73] Darwin 1859, p.  ii (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F373& viewtype=side& pageseq=7).
     [74] Phipps 1983
     [75] Secord 2000, p. 510
     [76] van Wyhe 2007, p. 197
     [77] Darwin 1859, p.  1 (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F373& viewtype=text& pageseq=16).
     [78] Darwin 1859, p.  5 (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F373& viewtype=text& pageseq=20).
     [79] Darwin & Costa 2009, p. 1
     [80] Darwin 1861, p.  xiii (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F381& pageseq=20).
     [81] Darwin 1866, p.  xiv-xv (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F385& pageseq=21).
     [82] Darwin & Costa 2009, p. 7
     [83] Quammen 2006, pp. 184–186
     [84] Darwin 1859, pp.  20–28 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=35)
     [85] David Reznick (2009) The Origin Then and Now, Princeton University Press, p.49.
     [86] Darwin 1859, pp.  44–59 Chap. II (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=59).
     [87] Darwin & Costa 2009, p. 44
     [88] Darwin 1859, pp.  60–61 Chap. III (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F373& viewtype=text& pageseq=75)
''On the Origin of Species''                                                                                                                         148
     [89] Darwin 1869, pp.  72 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F387& pageseq=101)
     [90] Darwin 1859, pp.  62–76 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=77)
     [91] Darwin 1859, p.  80 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=95)
     [92] Darwin 1859, p.  112 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=127)
     [93] Quammen 2006, p. 189
     [94] Darwin 1859, pp.  87–101 (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F373& viewtype=text& pageseq=102)
     [95] Darwin 1859, pp.  117–130 (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F373& viewtype=text& pageseq=133).
     [96] Larson 2004, p. 85
     [97] Darwin 1859, p.  13 (http:/ / darwin-online. org. uk/ content/ frameset?itemID=F373& viewtype=text& pageseq=28)
     [98] Darwin 1859, p.  134 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=152).
     [99] Larson 2004, pp. 86–87
     [100] Darwin 1859, pp.  131–150 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=149)
     [101] Quammen 2006, pp. 159–167
         Darwin 1859, pp.  159–167 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=177)
     [102] Richard Dawkins (8 February 2003). "An early flowering of genetics | Books" (http:/ / www. guardian. co. uk/ books/ 2003/ feb/ 08/
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     [103] Bowler 2003, pp. 200–201
     [104] Bowler 1989
     [105] Darwin 1859, pp.  171–178 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=189)
     [106] Darwin 1859, pp.  171–172 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=189)
     [107] Darwin 1859, pp.  180–181 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=198)
     [108] Darwin 1859, pp.  187–190 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=205)
     [109] Darwin 1859, pp.  243–244 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=261)
     [110] Darwin 1859, pp.  245–278 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=263)
     [111] Darwin 1872, pp.  168–205 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F391& pageseq=196)
     [112] Bowler 2003, p. 182
     [113] Wesley R. Elsberry (1996), Punctuated Equilibria (http:/ / www. talkorigins. org/ faqs/ punc-eq. html#pe-vs-pg), , retrieved 2009-04-30
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     [115] Darwin 1859, pp.  306–308 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=324)
     [116] Schopf 2000
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     [122] Darwin 1859, pp.  408–409 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=426)
     [123] Darwin 1859, p.  420 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=438)
     [124] Darwin 1859, p.  434 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F373& pageseq=452)
     [125] Browne 2002, pp. 60–61
        Larson 2004, p. 92
        Darwin & Costa 2009, p. 488
        Quammen 2006, p. 196
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     [127] Darwin 1871, p.  152 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F937. 1& pageseq=165)
     [128] Secord 2000, pp. 508–511
     [129] Quammen 2006, pp. 183–188
     [130] Bowler 2003, pp. 180–181
     [131] Quammen 2006, pp. 190, 200–201
     [132] Larson 2004, pp. 88–89
     [133] Darwin & Costa 2009, p. xvii
     [134] Crawford 1859
     [135] Quammen 2006, pp. 176–181
     [136] Darwin & Costa 2009, p. ix
     [137] Browne 2002, pp. 376–379
     [138] van Wyhe 2008, pp. 48–49
     [139] Bowler 2003, pp. 177–180
     [140] Browne 2002, pp. 102–103
''On the Origin of Species''                                                                                                                              149
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''On the Origin of Species''                                                                                              151
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     • Janet Browne (2007). Darwin's Origin of Species: A Biography. ISBN 978-0871139535
     • David N. Reznick (2009) The Origin Then and Now: An Interpretive Guide to the Origin of Species ISBN
       978-0-691-12978-5.
     Contemporary reviews
     • Carpenter, William Benjamin (1859), "Darwin on the Origin of Species" (http://darwin-online.org.uk/content/
       frameset?itemID=A17&viewtype=text&pageseq=1), National Review 10 (December 1859): 188–214. Published
       anonymously.
''On the Origin of Species''                                                                                                  153
     External links
     • The Complete Works of Charles Darwin Online:
         • Table of contents (http://darwin-online.org.uk/contents.html), bibliography of On the Origin of Species
            (http://darwin-online.org.uk/EditorialIntroductions/Freeman_OntheOriginofSpecies.html) – links to text
            and images of all six British editions of The Origin of Species, the 6th edition with additions and corrections
            (final text), the first American edition, and translations into Danish, Dutch, French, German, Polish, Russian
            and Spanish.
         • Online Variorum (http://darwin-online.org.uk/Variorum/index.html), showing every change between the
            six British editions.
     •   The Origin of Species: An Outline (http://www.vectorsite.net/taorgin.html), A short, accessible outline of the
         book.
     •   Origin of Species (http://publicliterature.org/books/origin_of_species/xaa.php), full text with embedded
         audio.
     •   Victorian Science Texts (http://www.victorianweb.org/science/texts.html)
     •   Darwin Correspondence Project Home Page (http://www.darwinproject.ac.uk), University Library,
         Cambridge.
     •   PDF scans at Archive.org (http://www.archive.org/search.php?query=(origin species) AND creator:(darwin))
Darwinism                                                                                                                            154
    Darwinism
    Darwinism is a set of movements and concepts related to ideas of
    transmutation of species or evolution, including ideas with no
    connection to the work of Charles Darwin.[1] [2] [3] The meaning of
    Darwinism has changed over time, and varies depending on who is
    using the term.[4] In the United States, Darwinism is often used by
    creationists as a pejorative term but in the United Kingdom the term
    has no negative connotations, being freely used as a short hand for
    evolutionary theory.[5]
    The term was coined by Thomas Henry Huxley in April 1860,[6] and
    was used to describe evolutionary concepts, including earlier concepts
    such as Malthusianism and Spencerism. In the late 19th century it
    came to mean the concept that natural selection was the sole
    mechanism of evolution, in contrast to Lamarckism, then around 1900
    it was eclipsed by Mendelism until the modern evolutionary synthesis
                                                                                              Charles Darwin in 1868
    unified Darwin's and Gregor Mendel's ideas. As modern evolutionary
    theory has developed, the term has been associated at times with
    specific ideas.[4]
    While the term has remained in use amongst scientific authors, it is increasingly regarded as an inappropriate
    description of modern evolutionary theory.[7] [8] [9] For example, Darwin was unfamiliar with the work of Gregor
    Mendel,[10] having as a result only a vague and inaccurate understanding of heredity, and knew nothing of genetic
    drift.[11]
    Conceptions of Darwinism
    While the term Darwinism had been used previously to refer to the
    work of Erasmus Darwin in the late 18th century, the term as
    understood today was introduced when Charles Darwin's 1859 book
    On the Origin of Species was reviewed by Thomas Henry Huxley in
    the April 1860 issue of the Westminster Review.[13] Having hailed the
    book as, "a veritable Whitworth gun in the armoury of liberalism"
    promoting scientific naturalism over theology, and praising the
    usefulness of Darwin's ideas while expressing professional reservations
    about Darwin's gradualism and doubting if it could be proved that
    natural selection could form new species,[14] Huxley compared
    Darwin's achievement to that of Copernicus in explaining planetary
    motion:
            Origin of Species" an immense debt of gratitude...... And viewed as a whole, we do not believe that, since the
            publication of Von Baer's "Researches on Development," thirty years ago, any work has appeared calculated to
            exert so large an influence, not only on the future of Biology, but in extending the domination of Science over
            regions of thought into which she has, as yet, hardly penetrated.[6]
    Another important evolutionariy theorist of the same period was Peter Kropotkin who, in his book Mutual Aid: A
    Factor of Evolution, advocated a conception of Darwinism counter to that of Huxley. His conception was centred
    around what he saw as the widespread use of cooperation as a survival mechanism in human societies and animals.
    He used biological and sociological arguments in an attempt to show that the main factor in facilitating evolution is
    cooperation between individuals in free-associated societies and groups. This was in order to counteract the
    conception of fierce competition as the core of evolution, which provided a rationalisation for the dominant political,
    economic and social theories of the time; and the prevalent interpretations of Darwinism, such as those by Huxley,
    who is targeted as an opponent by Kropotkin. Kropotkin's conception of Darwinism could be summed up by the
    following quote:
            In the animal world we have seen that the vast majority of species live in societies, and that they find in
            association the best arms for the struggle for life: understood, of course, in its wide Darwinian sense – not as a
            struggle for the sheer means of existence, but as a struggle against all natural conditions unfavourable to the
            species. The animal species, in which individual struggle has been reduced to its narrowest limits, and the
            practice of mutual aid has attained the greatest development, are invariably the most numerous, the most
            prosperous, and the most open to further progress. The mutual protection which is obtained in this case, the
            possibility of attaining old age and of accumulating experience, the higher intellectual development, and the
            further growth of sociable habits, secure the maintenance of the species, its extension, and its further
            progressive evolution. The unsociable species, on the contrary, are doomed to decay.
                                                       – Peter Kropotkin, Mutual Aid: A Factor of Evolution (1902), Conclusion.
   “ [Both] a Darwinian 'left' and a Darwinian 'right' were in place before most people had grasped the Darwinian middle, which was where the
     maker was.
                [15]
                                                                                                                                                ”
    In Darwin's day there was no rigid definition of the term "Darwinism", and it was used by opponents and proponents
    of Darwin's biological theory alike to mean whatever they wanted it to in a larger context. The ideas had
    international influence, and Ernst Haeckel developed what was known as Darwinismus in Germany, although, like
    Spencer Haeckel's "Darwinism" had only a rough resemblance to the theory of Charles Darwin, and was not centred
    on natural selection at all.
Darwinism                                                                                                                      156
    While the reaction against Darwin's ideas is nowadays often thought to have been widespread immediately, in 1886
    Alfred Russel Wallace went on a lecture tour across the United States, starting in New York and going via Boston,
    Washington, Kansas, Iowa and Nebraska to California, lecturing on what he called Darwinism without any
    problems.[16]
    Other uses
    The term Darwinism is often used in the United States by promoters of creationism, notably by leading members of
    the intelligent design movement, as an epithet to attack evolution as though it were an ideology (an "ism") of
    philosophical naturalism, or atheism.[17] For example, Phillip E. Johnson makes this accusation of atheism with
    reference to Charles Hodge's book What Is Darwinism?.[18] However, unlike Johnson, Hodge confined the term to
    exclude those like Asa Gray who combined Christian faith with support for Darwin's natural selection theory, before
    answering the question posed in the book's title by concluding: "It is Atheism."[19] [20] [21] Creationists use the term
    Darwinism, often pejoratively, to imply that the theory has been held as true only by Darwin and a core group of his
    followers, whom they cast as dogmatic and inflexible in their belief.[22] Casting evolution as a doctrine or belief, as
    well as a pseudo-religious ideology like Marxism,[23] bolsters religiously motivated political arguments to mandate
    equal time for the teaching of creationism in public schools.
    However, Darwinism is also used neutrally within the scientific community to distinguish modern evolutionary
    theories from those first proposed by Darwin, as well as by historians to differentiate it from other evolutionary
    theories from around the same period. For example, Darwinism may be used to refer to Darwin's proposed
    mechanism of natural selection, in comparison to more recent mechanisms such as genetic drift and gene flow. It
    may also refer specifically to the role of Charles Darwin as opposed to others in the history of evolutionary thought
    — particularly contrasting Darwin's results with those of earlier theories such as Lamarckism or later ones such as
    the modern synthesis.
    In the United Kingdom the term retains its positive sense as a reference to natural selection, and for example Richard
    Dawkins wrote in his collection of essays A Devil's Chaplain, published in 2003, that as a scientist he is a
    Darwinist.[24]
    See also
    •   Darwinism (book)
    •   Modern evolutionary synthesis
    •   Neo-Darwinism
    •   Neural Darwinism
    •   Social Darwinism
    •   Darwin Awards
    •   Pangenesis - Charles Darwin's hypothetical mechanism for heredity
    •   Universal Darwinism
Darwinism                                                                                                                                                 157
    Notes
    [1] John Wilkins (1998). "How to be Anti-Darwinian" (http:/ / www. talkorigins. org/ faqs/ anti-darwin. html). TalkOrigins Archive. . Retrieved
        19 June 2008.
    [2] "Expelled Exposed: Why Expelled Flunks » …on what evolution explains" (http:/ / www. expelledexposed. com/ index. php/ contest/
        on-what-evolution-explains). National Center for Science Education. . Retrieved 22 December 2008.
    [3] based on an European Southern Observatory release (9 December 2006). "Galactic Darwinism :: Astrobiology Magazine - earth science -
        evolution distribution Origin of life universe - life beyond :: Astrobiology is study of earth science evolution distribution Origin of life in
        universe terrestrial" (http:/ / www. astrobio. net/ news/ index. php?name=News& file=article& sid=2169& theme=Printer). . Retrieved 22
        December 2008.
    [4] Joel Hanes. "What is Darwinism?" (http:/ / www. talkorigins. org/ faqs/ darwinism. html). TalkOrigins Archive. . Retrieved 19 June 2008.
    [5] Scott, Eugenie C.; Branch, Glenn (16 January 2009). "Don’t Call it “Darwinism”" (http:/ / www. springerlink. com/ content/
        n47h34357743w4p0/ ?p=e3b030036a4d442a8ce393291fe0688f& pi=9). Evolution: Education and Outreach (New York: Springer) 2 (1): 90.
        doi:10.1007/s12052-008-0111-2. ISSN 1936-6434. . Retrieved 17 November 2009.
    [6] Huxley, T.H. (April 1860). "ART. VIII.- Darwin on the origin of Species" (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=side&
        itemID=A32& pageseq=29). Westminster Review. pp. 541–70. . Retrieved 19 June 2008. "What if the orbit of Darwinism should be a little
        too circular?"
    [7] John Wilkins (1998). "How to be Anti-Darwinian" (http:/ / www. talkorigins. org/ faqs/ anti-darwin. html). TalkOrigins Archive. . Retrieved
        27 June 2008.
    [8] Ruse, Michael (2003). Darwin and Design: Does Evolution Have a Purpose? (http:/ / books. google. com/ ?id=SHWaeRiRD-cC&
        printsec=frontcover& dq="michael+ ruse"+ darwinism). Cambridge, MA: Harvard University Press. pp. 293. ISBN 0674016319. . Retrieved
        18 July 2008.
    [9] Olivia Judson (15 July 2008). "Let’s Get Rid of Darwinism" (http:/ / judson. blogs. nytimes. com/ 2008/ 07/ 15/ lets-get-rid-of-darwinism/ ).
        New York Times. .
    [10] Sclater, Andrew (June 2006). "The extent of Charles Darwin’s knowledge of Mendel" (http:/ / www. springerlink. com/ content/
        w112307246x77t37/ ). Journal of Biosciences (Bangalore, India: Springer India / Indian Academy of Sciences) 31 (2): 191–193.
        doi:10.1007/BF02703910. PMID 16809850. . Retrieved 3 January 2009.
    [11] Laurence Moran (1993). "Random Genetic Drift" (http:/ / www. talkorigins. org/ faqs/ genetic-drift. html). TalkOrigins Archive. . Retrieved
        27 June 2008.
    [12] Browne 2002, pp. 376–379
    [13] "The Huxley File § 4 Darwin's Bulldog" (http:/ / aleph0. clarku. edu/ huxley/ guide4. html). . Retrieved 29 June 2008.
    [14] Browne 2002, pp. 105–106
    [15] Gopnik 2009, p. 152.
    [16] "Evolution and Wonder - Understanding Charles Darwin - Speaking of Faith from American Public Media" (http:/ / speakingoffaith.
        publicradio. org/ programs/ darwin/ transcript. shtml). . Retrieved 27 July 2007.
    [17] Scott, Eugenie C. (2008). "Creation Science Lite: "Intelligent Design" as the New Anti-Evolutionism" (http:/ / biology. ucf. edu/ ~clp/
        Courses/ seminar/ papers/ 07-Scott-scientists_confront-cs_lite. pdf). In Godfrey, Laurie R.; Petto, Andrew J.. Scientists Confront Creationism:
        Intelligent Design and Beyond. New York: W. W. Norton. pp. 72. ISBN 0-393-33073-7.
    [18] Johnson, Phillip E.. "What is Darwinism?" (http:/ / www. arn. org/ docs/ johnson/ wid. htm). . Retrieved 4 January 2007.
    [19] Matthew, Ropp. "Charles Hodge and His Objection to Darwinism" (http:/ / www. theropps. com/ papers/ Winter1997/ CharlesHodge. htm). .
        Retrieved 4 January 2007.
    [20] Hodge, Charles. "What is Darwinism?" (http:/ / www. gutenberg. org/ files/ 19192/ 19192-8. txt). . Retrieved 4 January 2007.
    [21] Hodge, Charles (1874). What is Darwinism?. Scribner, Armstrong, and Company. OCLC 11489956.
    [22] Sullivan, M (2005). "From the Beagle to the School Board: God Goes Back to School" (http:/ / www. impactpress. com/ articles/ spring05/
        sullivanspring05. html). Impact Press. . Retrieved 18 September 2008.
    [23] "Darwinism should be allowed to collapse and end up on the ash heap of history" (http:/ / www. docstoc. com/ docs/ 20835072/
        Darwinism-should-be-allowed-to-collapse-and-end-up-on-the-ash-heap-of-history). .
    [24] Sheahen, Laura. Religion: For Dummies (http:/ / www. beliefnet. com/ story/ 136/ story_13688_1. html). BeliefNet.com, interview about
        2003 book.
Darwinism                                                                                                                   158
    References
    • Browne, E. Janet (2002). Charles Darwin: Vol. 2 The Power of Place. London: Jonathan Cape.
      ISBN 0712668373.
    • Gopnik, Adam (2009). Angels and Ages: A Short Book About Darwin, Lincoln, and Modern Life. London:
      Quercus. ISBN 9781847249296.
    External links
    • Universal Darwinism (http://www.universaldarwinism.com)
    • (Russian) Nikolai Danilevsky. 1885-1889 Darwinism. A Critical Study (http://new.runivers.ru/lib/book3542/)
      (Дарвинизм. Критическое исследование) at Runivers.ru in DjVu format
    • Stanford Encyclopedia of Philosophy entry (http://plato.stanford.edu/entries/darwinism/)
    • What is Darwinism (http://www.talkorigins.org/faqs/darwinism.html)
    • The Darwinian Revolution (http://www.evolution-of-man.info/history.htm)
    Editions
    A second, slightly revised edition was republished in 1958. In 1999, a third variorum edition (ISBN 0-19-850440-3),
    with the original 1930 text, annotated with the 1958 alterations, notes and alterations accidentally omitted from the
    second edition was published, edited by Henry Bennett.
    Chapters
    It contains the following chapters:
    1. The Nature of Inheritance [2]
    2. The Fundamental Theorem of Natural Selection
    3. The Evolution of Dominance
    4. Variation as determined by Mutation and Selection
    5. Variation etc
    6. Sexual Reproduction and Sexual Selection [3]
    7. Mimicry
    8. Man and Society
    9. The Inheritance of Human Fertility
    10. Reproduction in Relation to Social Class
    11. Social Selection of Fertility
    12. Conditions of Permanent Civilization
''The Genetical Theory of Natural Selection''                                                                                    159
     Contents
     In the preface, Fisher considers some general points, including that there must be an understanding of natural
     selection distinct from that of evolution, and that the then-recent advances in the field of genetics (see history of
     genetics) now allowed this. In the first chapter, Fisher considers the nature of inheritance, rejecting blending
     inheritance in favour of particulate inheritance. The second chapter introduces Fisher's fundamental theorem of
     natural selection. The third considers the evolution of dominance, which Fisher believed was strongly influenced by
     modifiers. The last five chapters (8-12) include Fisher's more idiosyncratic views on eugenics.
     Dedication
     The book is dedicated to Major Leonard Darwin, Fisher's friend, correspondent and son of Charles Darwin, "In
     gratitude for the encouragement, given to the author, during the last fifteen years, by discussing many of the
     problems dealt with in this book".
     Reviews
     Henry Bennett gave an account of the writing and reception of Fisher's Genetical Theory.[4]
     Sewall Wright, who had many disagreements with Fisher, reviewed the book and wrote that it was "certain to take
     rank as one of the major contributions to the theory of evolution".[5] J.B.S. Haldane described it as "brilliant".[6]
     Reginald Punnett was negative, however.[7] '
     The Genetical Theory was largely overlooked for 40 years, and in particular the fundamental theorem was
     misunderstood. The work had a great effect on W.D. Hamilton, who discovered it as an undergraduate at Oxford[8]
     and noted on the rear cover of the 1999 variorum edition:
           This is a book which, as a student, I weighed as of equal importance to the entire rest of my undergraduate
           Cambridge BA course and, through the time I spent on it, I think it notched down my degree. Most chapters
           took me weeks, some months.
           ...And little modified even by molecular genetics, Fisher's logic and ideas still underpin most of the ever
           broadening paths by which Darwinism continues its invasion of human thought.
           Unlike in 1958, natural selection has become part of the syllabus of our intellectual life and the topic is
           certainly included in every decent course in biology.
           For a book that I rate only second in importance in evolution theory to Darwin's Origin (this as joined with its
           supplement Of Man), and also rate as undoubtedly one of the greatest books of the twentieth century the
           appearance of a variorum edition is a major event...
           By the time of my ultimate graduation, will I have understood all that is true in this book and will I get a First?
           I doubt it. In some ways some of us have overtaken Fisher; in many, however, this brilliant, daring man is still
           far in front.
     The publication of the variorum edition in 1999 led to renewed interest in the work and reviews by Laurence Cook
     ("This is perhaps the most important book on evolutionary genetics ever written"),[9] Brian Charlesworth,[10] Jim
     Crow[11] and A.W.F. Edwards[12]
''The Genetical Theory of Natural Selection''                                                                                                               160
     References
     [1] Grafen, Alan; Ridley, Mark (2006). Richard Dawkins: How A Scientist Changed the Way We Think. New York, New York: Oxford
         University Press. p. 69. ISBN 0199291160.
     [2] http:/ / www. blackwellpublishing. com/ ridley/ classictexts/ fisher1. pdf
     [3] http:/ / www. blackwellpublishing. com/ ridley/ classictexts/ fisher2. pdf
     [4] http:/ / digital. library. adelaide. edu. au/ coll/ special/ fisher/ natsel/ tp_intro. pdf
     [5] Wright, S., 1930 The Genetical Theory of Natural Selection: a review (http:/ / jhered. oxfordjournals. org/ cgi/ reprint/ 21/ 8/ 349). J. Hered.
         21:340-356.
     [6] Haldane, J.B.S., 1932 The Causes of Evolution. Longman Green, London.
     [7] Punnett, R.C. 1930, A review of The Genetical Theory of Natural Selection, Nature 126: 595-7
     [8] Grafen, A. 2004. 'William Donald Hamilton’ (http:/ / users. ox. ac. uk/ ~grafen/ cv/ WDH_memoir. pdf). Biographical Memoirs of Fellows of
         the Royal Society, 50, 109-132
     [9] Cook, L. 2000 Book reviews. The Genetical Theory of Natural Selection — A Complete Variorum Edition. R. A. Fisher (edited by Henry
         Bennett) (http:/ / www. nature. com/ hdy/ journal/ v84/ n3/ full/ 6887132a. html). Heredity 84 (3) , 390–39
     [10] Charlesworth, B. 2000 The Genetical Theory of Natural Selection. A Complete Variorum Edition. By R. A. Fisher (edited with foreword
         and notes by J. H. Bennett). Oxford University Press. 1999. ISBN 0-19-850440-3. xxi+318 pages. (http:/ / journals. cambridge. org/ action/
         displayAbstract?fromPage=online& aid=52675) Genetics Research 75: 369-373
     [11] Crow, J.F. 2000 Second only to Darwin - The Genetical Theory of Natural Selection. A Complete Variorum Edition by R.A. Fisher (http:/ /
         www. sciencedirect. com/ science?_ob=ArticleURL& _udi=B6VJ1-405BR68-M& _user=10& _rdoc=1& _fmt=& _orig=search& _sort=d&
         view=c& _acct=C000050221& _version=1& _urlVersion=0& _userid=10& md5=3a8c3a64ce75187ab109f4b0b9d18ba9) Trends in Ecology
         and Evolution, Volume 15, Number 5, 1 May 2000 , pp. 213-214(2)
     [12] Edwards, A.W.F. 2000 The Genetical Theory of Natural Selection (http:/ / www. genetics. org/ cgi/ content/ full/ 154/ 4/ 1419) Genetics,
         Vol. 154, 1419-1426, April 2000
     External links
     • Full text of 1930 edition (http://www.openlibrary.org/details/geneticaltheoryo031631mbp), Open Library
     Neo-Darwinism
     Neo-Darwinism is a term used to describe the 'modern synthesis' of Darwinian evolution through natural selection
     with Mendelian genetics, the latter being a set of primary tenets specifying that evolution involves the transmission
     of characteristics from parent to child through the mechanism of genetic transfer, rather than the 'blending process' of
     pre-Mendelian evolutionary science. Neo-Darwinism also separates Darwin's ideas of natural selection from his
     hypothesis of Pangenesis as a Lamarckian source of variation involving blending inheritance.[1]
     As part of the disagreement about whether natural selection alone was sufficient to explain speciation, George
     Romanes coined the term neo-Darwinism to refer to the version of evolution advocated by Alfred Russel Wallace
     and August Weismann with its heavy dependence on natural selection.[2] Weismann and Wallace rejected the
     Lamarckian idea of inheritance of acquired characteristics, something that Darwin had not ruled out.[3] The term was
     first used in 1895 to explain that evolution occurs solely through natural selection, in other words, without any
     mechanism involving the inheritance of acquired characteristics resulting from use or disuse.[4] These two scientists'
     complete rejection of Lamarckism came from Weismann's germ plasm theory. Weismann realised that the cells that
     produce the germ plasm, or gametes (such as sperm and egg in animals), separate from the somatic cells that go on to
     make other body tissues at an early stage in development. Since he could see no obvious means of communication
     between the two he asserted that the inheritance of acquired characteristics was therefore impossible; a conclusion
     now known as Weismann's barrier.[5]
     From the 1880s to the 1930s the term continued to be applied to the panselectionist school of thought, which argued
     that natural selection was the main and perhaps sole cause of all evolution.[6] From then until around 1947 the term
     was used for the panselectionist followers of R. A. Fisher.
Neo-Darwinism                                                                                                                                        161
    See also
    • Modern evolutionary synthesis
    • The Origin of Species
    • Developmental systems theory
    • Evolutionary developmental biology
    • Neo-Lamarckism
    References
    [1] Kutschera U, Niklas KJ (2004). "The modern theory of biological evolution: an expanded synthesis". Naturwissenschaften 91 (6): 255–76.
        doi:10.1007/s00114-004-0515-y. PMID 15241603.
    [2] Gould The Structure of Evolutionary Theory p. 216
    [3] Kutschera U. 2003. A comparative analysis of the Darwin-Wallace papers and the development of the concept of natural selection. Theory in
        Biosciences 122, 343-359 (http:/ / www. springerlink. com/ content/ f6131358k265g3u4/ )
    [4] Reif W-E. Junker T. Hoßfeld U. (2000). "The synthetic theory of evolution: general problems and the German contribution to the synthesis".
        Theory in Biosciences 119 (1): 41–91(51). doi:10.1078/1431-7613-00004.
    [5] Barbieri FD (1989). "The origin of Metazoa and Weismann's germ line theory". Riv. Biol. 82 (1): 61–74. PMID 2665023.
    [6] "How to be Anti-Darwinian" (http:/ / www. talkorigins. org/ faqs/ anti-darwin. html). . Retrieved 2007-09-19.
    [7] "The Modern Synthesis of Genetics and Evolution" (http:/ / www. talkorigins. org/ faqs/ modern-synthesis. html). . Retrieved 2007-09-19.
    [8] Pigliucci, M. (2007). "Do We Need An Extended Evolutionary Synthesis?" (http:/ / www. bioone. org/ perlserv/ ?request=get-abstract).
        Evolution 61 (12): 2743–2749. doi:10.1111/j.1558-5646.2007.00246.x. PMID 17924956. .
    [9] Mayr E. (1984). "What is Darwinism Today?" (http:/ / links. jstor. org/ sici?sici=0270-8647(1984)1984<145:WIDT>2. 0. CO;2-5).
        Proceedings of the Biennial Meeting of the Philosophy of Science Association 2: 145–156. .
    [10] "neo-Darwinism" (http:/ / www. britannica. com/ eb/ article-9373225/ neo-Darwinism). Britannica.com. . Retrieved 2007-09-19.
    [11] "neo-Darwinism" (http:/ / encyclopedia. farlex. com/ neo-Darwinism). Hutchinson Encyclopedia. . Retrieved 2007-09-19.
    [12] "A-Z Browser of Evolution" (http:/ / www. blackwellpublishing. com/ ridley/ a-z/ Neo-Darwinism. asp). Blackwell Publishing. . Retrieved
        2007-09-19.
    [13] "Lecture on Neo-Darwinism" (http:/ / richarddawkins. net/ article,1345,Lecture-on-Neo-Darwinism,Richard-Dawkins). RichardDawkins.net
        : The Official Richard Dawkins Website. . Retrieved 2007-09-19.
    [14] "Challenges to Neo-Darwinism and Their Meaning for a Revised View of Human Consciousness" (http:/ / www. tannerlectures. utah. edu/
        lectures/ documents/ gould85. pdf). Cambridge University: The Tanner Lectures on Human Values. . Retrieved 2009-03-05.
Neo-Darwinism                                                                                                                 162
    External links
    • The Variation of Animals and Plants Under Domestication (http://www.esp.org/books/darwin/variation/
      facsimile/title3.html)
    • Challenges to neo-Darwinism - Stephen Jay Gould (http://web.archive.org/web/20060924065722/http://
      www.tannerlectures.utah.edu/lectures/gould85.pdf) at the Wayback Machine (archived September 24, 2006).
    • Neodarwinism - Richard Dawkins (http://video.google.com/videoplay?docid=4633079169415752395)
    The idea that speciation occurs after populations are reproductively isolated has been much debated. In plants,
    polyploidy must be included in any view of speciation. Formulations such as 'evolution consists primarily of changes
    in the frequencies of alleles between one generation and another' were proposed rather later. The traditional view is
    that developmental biology ('evo-devo') played little part in the synthesis,[6] but an account of Gavin de Beer's work
    by Stephen J. Gould suggests he may be an exception.[7]
    1859–1899
    Charles Darwin's The Origin of Species was successful in convincing most biologists that evolution had occurred,
    but was less successful in convincing them that natural selection was its primary mechanism. In the 19th and early
    20th centuries, variations of Lamarckism, orthogenesis ('progressive' evolution), and saltationism (evolution by
    jumps) were discussed as alternatives.[8] Also, Darwin did not offer a precise explanation of how new species arise.
    As part of the disagreement about whether natural selection alone was sufficient to explain speciation, George
    Romanes coined the term neo-Darwinism to refer to the version of evolution advocated by Alfred Russel Wallace
    and August Weismann with its heavy dependence on natural selection.[9] Weismann and Wallace rejected the
    Lamarckian idea of inheritance of acquired characteristics, something that Darwin had not ruled out.[10]
    Weismann's idea was that the relationship between the hereditary material, which he called the germ plasm (de:
    Keimplasma), and the rest of the body (the soma) was a one-way relationship: the germ-plasm formed the body, but
    the body did not influence the germ-plasm, except indirectly in its participation in a population subject to natural
    selection. Weismann was translated into English, and though he was influential, it took many years for the full
    significance of his work to be appreciated.[11] Later, after the completion of the modern synthesis, the term
    neo-Darwinism came to be associated with its core concept: evolution, driven by natural selection acting on variation
    produced by genetic mutation, and genetic recombination (chromosomal crossovers).[9]
    1900–1915
    Gregor Mendel's work was re-discovered by Hugo de Vries and Carl Correns in 1900. News of this reached William
    Bateson in England, who reported on the paper during a presentation to the Royal Horticultural Society in May
    1900.[12] It showed that the contributions of each parent retained their integrity rather than blending with the
    contribution of the other parent. This reinforced a division of thought, which was already present in the 1890s.[13]
    The two schools were:
    • Saltationism (large mutations or jumps), favored by early Mendelians who viewed hard inheritance as
      incompatible with natural selection[14]
    • Biometric school: led by Karl Pearson and Walter Weldon, argued vigorously against it, saying that empirical
      evidence indicated that variation was continuous in most organisms, not discrete as Mendelism predicted.
    The relevance of Mendelism to evolution was unclear and hotly debated, especially by Bateson, who opposed the
    biometric ideas of his former teacher Weldon. Many scientists believed the two theories substantially contradicted
    each other.[15] This debate between the biometricians and the Mendelians continued for some 20 years and was only
    solved by the development of population genetics.
    T. H. Morgan began his career in genetics as a saltationist, and started out trying to demonstrate that mutations could
    produce new species in fruit flies. However, the experimental work at his lab with Drosophila melanogaster, which
    helped establish the link between Mendelian genetics and the chromosomal theory of inheritance, demonstrated that
    rather than creating new species in a single step, mutations increased the genetic variation in the population.[16]
Modern evolutionary synthesis                                                                                                 164
    that were reproductively isolated from all other populations.[] [19] [24] Before he left Germany for the United States in
    1930, Mayr had been influenced by the work of German biologist Bernhard Rensch. In the 1920s Rensch, who like
    Mayr did field work in Indonesia, analyzed the geographic distribution of polytypic species and complexes of closely
    related species paying particular attention to how variations between different populations correlated with local
    environmental factors such as differences in climate. In 1947, Rensch published Neuere Probleme der
    Abstammungslehre: die Transspezifische Evolution (English translation 1959: Evolution above the Species level).
    This looked at how the same evolutionary mechanisms involved in speciation might be extended to explain the
    origins of the differences between the higher level taxa. His writings contributed to the rapid acceptance of the
    synthesis in Germany.[25] [26]
    George Gaylord Simpson was responsible for showing that the modern synthesis was compatible with paleontology
    in his book Tempo and Mode in Evolution published in 1944. Simpson's work was crucial because so many
    paleontologists had disagreed, in some cases vigorously, with the idea that natural selection was the main mechanism
    of evolution. It showed that the trends of linear progression (in for example the evolution of the horse) that earlier
    paleontologists had used as support for neo-Lamarckism and orthogenesis did not hold up under careful examination.
    Instead the fossil record was consistent with the irregular, branching, and non-directional pattern predicted by the
    modern synthesis.[] [19]
    The botanist G. Ledyard Stebbins was another major contributor to the synthesis. His major work, Variation and
    Evolution in Plants, was published in 1950. It extended the synthesis to encompass botany including the important
    effects of hybridization and polyploidy in some kinds of plants.[]
    Further advances
    The modern evolutionary synthesis continued to be developed and refined after the initial establishment in the 1930s
    and 1940s. The work of W. D. Hamilton, George C. Williams, John Maynard Smith and others led to the
    development of a gene-centric view of evolution in the 1960s. The synthesis as it exists now has extended the scope
    of the Darwinian idea of natural selection to include subsequent scientific discoveries and concepts unknown to
    Darwin, such as DNA and genetics, which allow rigorous, in many cases mathematical, analyses of phenomena such
    as kin selection, altruism, and speciation.
    A particular interpretation most commonly associated with Richard Dawkins, author of The Selfish Gene, asserts that
    the gene is the only true unit of selection.[27] Dawkins further extended the Darwinian idea to include non-biological
    systems exhibiting the same type of selective behavior of the 'fittest' such as memes in culture. The synthesis
    continues to undergo regular review.[28] (See also Current research in evolutionary biology).
Modern evolutionary synthesis                                                                                                             166
    • Our understanding of the evolution of the Earth's atmosphere has progressed. The substitution of oxygen for
      carbon dioxide in the atmosphere, which occurred in the Proterozoic, caused probably by cyanobacteria in the
      form of stromatolites, caused changes leading to the evolution of aerobic organisms.[32] [33]
    • The identification of the first generally accepted fossils of microbial life was made by geologists. These rocks
      have been dated as about 3.465 billion years ago.[34] Walcott was the first geologist to identify pre-Cambrian
      fossil bacteria from microscopic examination of thin rock slices. He also thought stromatolites were organic in
      origin. His ideas were not accepted at the time, but may now be appreciated as great discoveries.[35]
    • Information about paleoclimates is increasingly available, and being used in paleontology. One example: the
      discovery of massive ice ages in the Proterozoic, following the great reduction of CO2 in the atmosphere. These
      ice ages were immensely long, and led to a crash in microflora.[36] See also Cryogenian period and Snowball
      Earth.
    • Catastrophism and mass extinctions. A partial reintegration of catastrophism has occurred,[37] and the importance
      of mass extinctions in large-scale evolution is now apparent. Extinction events disturb relationships between
      many forms of life and may remove dominant forms and release a flow of adaptive radiation amongst groups that
      remain. Causes include meteorite strikes (K–T junction; Upper Devonian); flood basalt provinces (Deccan traps
      at K/T junction; Siberian traps at P–T junction); and other less dramatic processes.[38] [39]
    Conclusion: Our present knowledge of earth history strongly suggests that large-scale geophysical events influenced
    macroevolution and megaevolution. These terms refer to evolution above the species level, including such events as
    mass extinctions, adaptive radiation, and the major transitions in evolution.[40] [41]
Modern evolutionary synthesis                                                                                                  167
    Trees of life
    The ability to analyse sequence in macromolecules (protein, DNA, RNA) provides evidence of descent, and permits
    us to work out genealogical trees covering the whole of life, since now there are data on every major group of living
    organisms. This project, begun in a tentative way in the 1960s, has become a search for the universal tree or the
    universal ancestor, a phrase of Carl Woese.[52] [53] The tree that results has some unusual features, especially in its
    roots. There are two kingdoms of prokaryotes: bacteria and archaea, both of which contributed genetic material to
    the eukaryotes, mainly by means of symbiosis. Also, since bacteria can pass genetic material to other bacteria, their
    relationships look more like a web than a tree. Once eukaryotes were established, their sexual reproduction produced
    the traditional branching tree-like pattern, the only diagram Darwin put in the Origin. The last universal ancestor
    (LUA) would be a prokaryotic cell before the split between the bacteria and archaea. LUA is defined as most recent
    organism from which all organisms now living on Earth descend (some 3.5 to 3.8 billion years ago, in the Archean
    era).[54]
    This technique may be used to clarify relationships within any group of related organisms. It is now a standard
    procedure, and examples are published regularly. April 2009 sees the publication of a tree covering all the animal
    phyla, derived from sequences from 150 genes in 77 taxa.[55]
    Early attempts to identify relationships between major groups were made in the 19th century by Ernst Haeckel, and
    by comparative anatomists such as Thomas Henry Huxley and E. Ray Lankester. Enthusiasm waned: it was often
    difficult to find evidence to adjudicate between different opinions. Perhaps for that reason, the evolutionary synthesis
    paid surprisingly little attention to this activity. It is certainly a lively field of research today.
    Evo-devo
    What once was called embryology played a modest role in the evolutionary synthesis,[56] mostly about evolution by
    changes in developmental timing (allometry and heterochrony).[57] Man himself was, according to Bolk, a typical
    case of evolution by retention of juvenile characteristics (neoteny). He listed many characters where "Man, in his
    bodily development, is a primate foetus that has become sexually mature".[58] Unfortunately, his interpretation of
    these ideas was non-Darwinian, but his list of characters is both interesting and convincing.[59]
    Modern interest in Evo-devo springs from clear proof that development is closely controlled by special genetic
    systems, and the hope that comparison of these systems will tell us much about the evolutionary history of different
    groups.[60] [61] In a series of experiments with the fruit-fly Drosophila, Edward B. Lewis was able to identify a
Modern evolutionary synthesis                                                                                                         168
    complex of genes whose proteins bind to the cis-regulatory regions of target genes. The latter then activate or repress
    systems of cellular processes that accomplish the final development of the organism.[62] [63] Furthermore, the
    sequence of these control genes show co-linearity: the order of the loci in the chromosome parallels the order in
    which the loci are expressed along the anterior-posterior axis of the body. Not only that, but this cluster of master
    control genes programs the development of all higher organisms.[64] [65] Each of the genes contains a homeobox, a
    remarkably conserved DNA sequence. This suggests the complex itself arose by gene duplication.[66] [67] [68] In his
    Nobel lecture, Lewis said "Ultimately, comparisons of the [control complexes] throughout the animal kingdom
    should provide a picture of how the organisms, as well as the [control genes] have evolved".
    The term deep homology was coined to describe the common origin of genetic regulatory apparatus used to build
    morphologically and phylogenetically disparate animal features.[69] It applies when a complex genetic regulatory
    system is inherited from a common ancestor, as it is in the evolution of vertebrate and invertebrate eyes. The
    phenomenon is implicated in many cases of parallel evolution.[70]
    A great deal of evolution may take place by changes in the control of development. This may be relevant to
    punctuated equilibrium theory, for in development a few changes to the control system could make a significant
    difference to the adult organism. An example is the giant panda, whose place in the Carnivora was long uncertain.[71]
    Apparently, the giant panda's evolution required the change of only a few genetic messages (5 or 6 perhaps), yet the
    phenotypic and lifestyle change from a standard bear is considerable.[72] [73] The transition could therefore be
    effected relatively swiftly.
    Fossil discoveries
    In the past thirty or so years there have been excavations in parts of the world which had scarcely been investigated
    before. Also, there is fresh appreciation of fossils discovered in the 19th century, but then denied or deprecated: the
    classic example is the Ediacaran biota from the immediate pre-Cambrian, after the Cryogenian period. These
    soft-bodied fossils are the first record of multicellular life. The interpretation of this fauna is still in flux.
    Many outstanding discoveries have been made, and some of these have implications for evolutionary theory. The
    discovery of feathered dinosaurs and early birds from the Lower Cretaceous of Liaoning, N.E. China have convinced
    most students that birds did evolve from coelurosaurian theropod dinosaurs. Less well known, but perhaps of equal
    evolutionary significance, are the studies on early insect flight, on stem tetrapods from the Upper Devonian,[74] [75]
    and the early stages of whale evolution.[76]
    A shaft of light has been thrown on the evolution of flatfish (pleuronectiformes), such as plaice, sole, turbot and
    halibut, by recent work. Flatfish are interesting because they are one of the few vertebrate groups with external
    asymmetry. Their young are perfectly symmetrical, but the head is remodelled during a metamorphosis, which
    entails the migration of one eye to the other side, close to the other eye. Some species have both eyes on the left
    (turbot), some on the right (halibut, sole); all living and fossil flatfish to date show an 'eyed' side and a 'blind' side.[77]
    The lack of an intermediate condition in living and fossil flatfish species had led to debate about the origin of such a
    striking adaptation. The case was considered by Lamark,[78] who thought flatfish precursors would have lived in
    shallow water for a long period, and by Darwin, who predicted a gradual migration of the eye, mirroring the
    metamorphosis of the living forms. Darwin's long-time critic St. George Mivart thought that the intermediate stages
    could have no selective value,[79] and in the 6th edition of the Origin, Darwin made a concession to the possibility of
    acquired traits.[80] Many years later the geneticist Richard Goldschmidt put the case forward as an example of
    evolution by saltation, bypassing intermediate forms.[81] [82]
    A recent examination of two fossil species from the Eocene has provided the first clear picture of flatfish evolution.
    The discovery of stem flatfish with incomplete orbital migration refutes Goldschmidt's ideas, and demonstrates that
    "the assembly of the flatfish bodyplan occurred in a gradual, stepwise fashion".[83] There are no grounds for thinking
    that incomplete orbital migration was maladaptive, because stem forms with this condition ranged over two
    geological stages, and are found in localities which also yield flatfish with the full cranial asymmetry. The evolution
Modern evolutionary synthesis                                                                                                                        169
    See also
    •   Developmental systems theory
    •   Evolution
    •   Gene-centered view of evolution
    •   History of evolutionary thought
    •   Particulate inheritance theory
    •   Polymorphism (biology)
    •   Population genetics
    •   The Origin of Species
    Footnotes
    [1] "The scientific consensus around evolution is overwhelming". "Appendix: Frequently Asked Questions" (http:/ / www. nap. edu/ openbook.
        php?record_id=6024& page=27#p200064869970027001) (php). Science and Creationism: A View from the National Academy of Sciences
        (http:/ / books. nap. edu/ openbook. php?record_id=6024& page=28) (Second ed.). Washington, DC: The National Academy of Sciences.
        1999. p. 28. ISBN ISBN-0-309-06406-6. . Retrieved September 24, 2009.
    [2] Mayr, Ernst 2002. What evolution is. Weidenfeld & Nicolson, London. p270
    [3] Huxley J.S. 1942. Evolution: the modern synthesis. Allen & Unwin, London. 2nd ed 1963; 3rd ed 1974.
    [4] Mayr & Provine 1998
    [5] Mayr E. 1982. The growth of biological thought: diversity, evolution & inheritance. Harvard, Cambs. p567 et seq.
    [6] Smocovitis, V. Betty. 1996. Unifying Biology: the evolutionary synthesis and evolutionary biology. Princeton University Press. p192
    [7] Gould S.J. Ontogeny and phylogeny. Harvard 1977. p221-2
    [8] Bowler P.J. 2003. Evolution: the history of an idea. pp236–256
    [9] Gould The Structure of Evolutionary Theory p. 216
    [10] Kutschera U. 2003. A comparative analysis of the Darwin-Wallace papers and the development of the concept of natural selection. Theory in
        Biosciences 122, 343-359 (http:/ / www. springerlink. com/ content/ f6131358k265g3u4/ )
    [11] Bowler pp. 253–256
    [12] Mike Ambrose. "Mendel's Peas" (http:/ / www. jic. ac. uk/ germplas/ pisum/ zgs4f. htm). Genetic Resources Unit, John Innes Centre,
        Norwich, UK. . Retrieved 2007-09-22.
    [13] Bateson, William 1894. Materials for the study of variation, treated with special regard to discontinuity in the origin of species. The
        division of thought was between gradualists of the Darwinian school, and saltationists such as Bateson. Mutations (as 'sports') and
        polymorphisms were well known long before the Mendelian recovery.
    [14] Larson pp. 157–166
    [15] Grafen, Alan; Ridley, Mark (2006). Richard Dawkins: How A Scientist Changed the Way We Think. New York, New York: Oxford
        University Press. p. 69. ISBN 0199291160.
    [16] Bowler pp. 271–272
    [17] Transactions of the Royal Society of Edinburgh, 52:399–433
    [18] Larson Evolution: The Remarkable History of a Scientific Theory pp. 221–243
    [19] Bowler Evolution: The history of an Idea pp. 325–339
    [20] Gould The Structure of Evolutionary Theory pp. 503–518
    [21] Mayr & Provine 1998 p. 231
    [22] Dobzhansky T. 1951. Genetics and the Origin of Species. 3rd ed, Columbia University Press N.Y.
    [23] Ford E.B. 1964, 4th edn 1975. Ecological genetics. Chapman and Hall, London.
    [24] Mayr and Provine 1998 pp. 33–34
    [25] Smith, Charles H.. "Rensch, Bernhard (Carl Emmanuel) (Germany 1900–1990)" (http:/ / www. wku. edu/ ~smithch/ chronob/ RENS1900.
        htm). Western Kentucky University. . Retrieved 2007-09-22.
    [26] Mayr and Provine 1998 pp. 298–299, 416
    [27] Bowler p.361
    [28] Pigliucci, Massimo 2007. Do we need an extended evolutionary synthesis? (http:/ / www. blackwell-synergy. com/ doi/ abs/ 10. 1111/ j.
        1558-5646. 2007. 00246. x?cookieSet=1& journalCode=evo) Evolution 61 12, 2743–2749.
    [29] Dalrymple, G. Brent 2001. The age of the Earth in the twentieth century: a problem (mostly) solved. Special Publications, Geological
        Society of London 190, 205–221.
    [30] Van Andel, Tjeerd 1994. New views on an old planet: a history of global change. 2nd ed. Cambridge.
    [31] Witz A. 2006. The start of the world as we know it. Nature 442, p128.
Modern evolutionary synthesis                                                                                                                            170
    [32] Schopf J.W. and Klein (eds) 1992. The Proterozoic biosphere: a multi-disciplinary study. Cambridge University Press.
    [33] Lane, Nick 2002. Oxygen: the molecule that made the world. Oxford.
    [34] Schopf J.W. 1999. Cradle of life: the discovery of Earth's earliest fossils. Princeton.
    [35] Yochelson, Ellis L. 1998. Charles Doolittle Walcott: paleontologist. Kent State, Ohio.
    [36] Knoll A.H. and Holland H.D. 1995. Oxygen and Proterozoic evolution: an update. In National Research Council, Effects of past climates
        upon life. National Academy, Washington D.C.
    [37] Huggett, Richard J. 1997. Catastrophism. new ed. Verso.
    [38] Hallam A. and Wignall P.B. 1997. Mass extinctions and their aftermath. Columbia, N.Y.
    [39] Elewa A.M.T. (ed) 2008. Mass extinctions. Springer, Berlin.
    [40] The terms (or their equivalents) were used as part of the synthesis by Simpson G.G. 1944. Tempo and mode in evolution, and Rensch B.
        1947. Evolution above the species level. Columbia, N.Y. They were also used by some non-Darwinian evolutionists such as Yuri Filipchenko
        and Richard Goldschmidt. Here we use the terms as part of the evolutionary synthesis: they do not imply any change in mechanism.
    [41] Maynard Smith J. and Szathmáry E. 1997. The major transitions in evolution. Oxford.
    [42] de Bary, H.A. 1879. Die Erscheinung der Symbiose. Strassburg.
    [43] Khakhina, Liya Nikolaevna 1992. Concepts of symbiogenesis: a historical and critical study of the research of Russian scientists.
    [44] Wilson E.B. 1925. The cell in development and heredity . Macmillan, N.Y.
    [45] Walin I.E. 1927. Symbionticism and the origin of species. Williams & Wilkins, Baltimore.
    [46] Wells H.G., Huxley J. and Wells G.P. 1930. The science of life. London vol 2, p505. This section (The ABC of genetics) was written by
        Huxley.
    [47] Sapp, January 1994. Evolution by association: a history of symbiosis. Oxford.
    [48] Lederberg J. 1952. Cell genetics and hereditary symbiosis. Physiological Reviews 32, 403–430.
    [49] Margulis L and Fester R (eds) 1991. Symbiosis as a source of evolutionary innovation. MIT.
    [50] Margulis L. 1993. Symbiosis in cell evolution: microbial communities in the Archaean and Proterozoic eras. Freeman, N.Y.
    [51] Maynard Smith J. and Szathmáry E. 1997. The major transitions in evolution. Oxford. The origin of the eukaryote cell is one of the seven
        major transitions, according to these authors.
    [52] Woese, Carl 1998. The Universal Ancestor. PNAS 95, 6854–6859.
    [53] Doolittle, W. Ford 1999. Phylogenetic classification and the Universal Tree. Science 284, 2124–2128.
    [54] Doolittle, W. Ford 2000. Uprooting the tree of life. Scientific American 282 (6): 90–95.
    [55] Dunn, Casey W. et al 2009. Broad phylogenetic sampling improves resolution of the animal tree of life. Nature 452, 745–749.
    [56] Laubichler M. and Maienschein J. 2007. From Embryology to Evo-Devo: a history of developmental evolution. MIT.
    [57] de Beer, Gavin 1930. Embryology and evolution. Oxford; 2nd ed 1940 as Embryos and ancestors; 3rd ed 1958, same title.
    [58] Bolk, L. 1926. Der Problem der Menschwerdung. Fischer, Jena.
    [59] short-list of 25 characters reprinted in Gould, Stephen Jay 1977. Ontogeny and phylogeny. Harvard. p357
    [60] Raff R.A. and Kaufman C. 1983. Embryos, genes and evolution: the developmental-genetic basis of evolutionary changes. Macmillan, N.Y.
    [61] Carroll, Sean B. 2005. Endless forms most beautiful: the new science of Evo-Devo and the making of the animal kingdom. Norton, N.Y.
    [62] Lewis E.B. 1995. The bithorax complex: the first fifty years. Nobel Prize lecture. Repr. in Ringertz N. (ed) 1997. Nobel lectures, Physiology
        or Medicine. World Scientific, Singapore.
    [63] Lawrence P. 1992. The making of a fly. Blackwell, Oxford.
    [64] Duncan I. 1987. The bithorax complex. Ann. Rev. Genetics 21, 285–319.
    [65] Lewis E.B. 1992. Clusters of master control genes regulate the development of higher organisms. J. Am. Medical Assoc. 267, 1524–1531.
    [66] McGinnis W. et al 1984. A conserved DNA sequence in homeotic genes of the Drosophila antennipedia and bithorax complexes. Nature
        308, 428–433.
    [67] Scott M.P. and Weiner A.J. 1984. Structural relationships among genes that control developmental sequence homology between the
        antennipedia, ultrabithorax and fushi tarazu loci of Drosophila. PNAS USA 81, 4115.
    [68] Gehring W. 1999. Master control systems in development and evolution: the homeobox story. Yale.
    [69] Shubin N, Tabin C and Carroll S. 1997. Fossils, genes and the evolution of animal limbs. Nature 388, 639–648.
    [70] Shubin N, Tabin C and Carroll S. 2009. Deep homology and the origins of evolutionary novelty. Nature 457, p818–823.
    [71] Sarich V. 1976. The panda is a bear. Nature 245, 218–220.
    [72] Davies D.D. 1964. The giant panda: a morphological study of evolutionary mechanisms. Fieldiana Memoires (Zoology) 3, 1–339.
    [73] Stanley Steven M. 1979. Macroevolution: pattern & process. Freeman, San Francisco. p157
    [74] Clack, Jenny A. 2002. Gaining Ground: the origin and evolution of tetrapods. Bloomington, Indiana. ISBN 0-253-34054-3
    [75] ||cite web |url=[http://www.theclacks.org.uk/jac/ |title=Jenny Clack homepage}}
    [76] Both whale evolution and early insect flight are discussed in Raff R.A. 1996. The shape of life. Chicago. These discussions provide a
        welcome synthesis of evo-devo and paleontology.
    [77] Janvier, Philip 2008. Squint of the fossil flatfish. Nature 454, 169
    [78] Lamark J.B. 1809. Philosophie zoologique. Paris.
    [79] Mivart St G. 1871. The genesis of species. Macmillan, London.
    [80] Darwin, Charles 1872. The origin of species. 6th ed, Murray, London. p186–188. The whole of Chapter 7 in this edition is taken up with
        answering critics of natural selection.
Modern evolutionary synthesis                                                                                            171
    References
    • Allen, Garland. Thomas Hunt Morgan: The Man and His Science, Princeton University Press, 1978 ISBN
      0-691-08200-6
    • Bowler, Peter J. (2003). Evolution:The History of an Idea. University of California Press. ISBN 0-52023693-9.
    • Dawkins, Richard. The Blind Watchmaker, W.W. Norton and Company, Reissue Edition 1996 ISBN
      0-393-31570-3
    • Dobzhansky, T. Genetics and the Origin of Species, Columbia University Press, 1937 ISBN 0-231-05475-0
    • Fisher, R. A. The Genetical Theory of Natural Selection, Clarendon Press, 1930 ISBN 0-19-850440-3
    • Futuyma, D.J. Evolutionary Biology, Sinauer Associates, 1986, p. 12 0-87-893189-9
    • Gould, Stephen Jay (2002). The Structure of Evolutionary Theory. Belknap Press of Harvard University Press.
      ISBN 0-674-00613-5.
    • Haldane, J. B. S. The Causes of Evolution, Longman, Green and Co., 1932; Princeton University Press reprint,
      ISBN 0-691-02442-1
    • Huxley, J. S., ed. The New Systematics, Oxford University Press, 1940 ISBN 0-403-01786-6
    • Huxley, J. S. Evolution: The Modern Synthesis, Allen and Unwin, 1942 ISBN 0-02-846800-7
    • Larson, Edward J. (2004). Evolution:The Remarkable History of a Scientific Theory. Modern Library.
      ISBN 0-679-64288-9.
    • Margulis, Lynn and Dorion Sagan. "Acquiring Genomes: A Theory of the Origins of Species", Perseus Books
      Group, 2002 ISBN 0-465-04391-7
    • Mayr, E. Systematics and the Origin of Species, Columbia University Press, 1942; Harvard University Press
      reprint ISBN 0-674-86250-3
    • Mayr, E. and W. B. Provine, eds. The Evolutionary Synthesis: Perspectives on the Unification of Biology, Harvard
      University Press, 1998 ISBN 0-674-27225-0
    • Simpson, G. G. Tempo and Mode in Evolution, Columbia University Press, 1944 ISBN 0-231-05847-0
    • Smocovitis, V. Betty. Unifying Biology: The Evolutionary Synthesis and Evolutionary Biology, Princeton
      University Press, 1996 ISBN 0-691-27226-9
    • Wright, S. 1931. "Evolution in Mendelian populations". Genetics 16: 97–159.
    External links
    • Rose MR, Oakley TH, The new biology: beyond the Modern Synthesis (http://www.biology-direct.com/
      content/pdf/1745-6150-2-30.pdf). Biology Direct 2007, 2:30. A review of biology in light of recent innovations
      since the initiation of modern synthesis.
                                                                                                                              172
Base concepts
Heredity
Heredity is the passing of traits to offspring (from its parent or ancestors). This is the process by which an offspring
cell or organism acquires or becomes predisposed to the characteristics of its parent cell or organism. Through
heredity, variations exhibited by individuals can accumulate and cause a species to evolve. The study of heredity in
biology is called genetics, which includes the field of epigenetics.
History
The ancients had a variety of ideas about heredity: Theophrastus proposed that male flowers caused female flowers
to ripen; Hippocrates speculated that "seeds" were produced by various body parts and transmitted to offspring at the
time of conception, and Aristotle thought that male and female semen mixed at conception. Aeschylus, in 458 BC,
proposed the male as the parent, with the female as a "nurse for the young life sown within her."
Various hereditary mechanisms were envisaged without being properly tested or quantified. These included blending
inheritance and the inheritance of acquired traits. Nevertheless, people were able to develop domestic breeds of
animals as well as crops through artificial selection. The inheritance of acquired traits also formed a part of early
Lamarckian ideas on evolution.
In the 9th century AD, the Afro-Arab writer Al-Jahiz considered the effects of the environment on the likelihood of
an animal to survive, and first described the struggle for existence.[1] [2] His ideas on the struggle for existence in the
Book of Animals have been summarized as follows:
      "Animals engage in a struggle for existence; for resources, to avoid being eaten and to breed. Environmental
      factors influence organisms to develop new characteristics to ensure survival, thus transforming into new
      species. Animals that survive to breed can pass on their successful characteristics to offspring."[3]
In 1000 AD, the Arab physician, Abu al-Qasim al-Zahrawi (known as Albucasis in the West), wrote the first clear
description of haemophilia, a hereditary genetic disorder, in his Al-Tasrif. In this work, he wrote of an Andalusian
family whose males died of bleeding after minor injuries.[4]
During the 18th century, Dutch microscopist Antonie van Leeuwenhoek (1632–1723) discovered "animalcules" in
the sperm of humans and other animals. Some scientists speculated they saw a "little man" (homunculus) inside each
sperm. These scientists formed a school of thought known as the "spermists." They contended the only contributions
of the female to the next generation were the womb in which the homunculus grew, and prenatal influences of the
womb. An opposing school of thought, the ovists, believed that the future human was in the egg, and that sperm
merely stimulated the growth of the egg. Ovists thought women carried eggs containing boy and girl children, and
that the gender of the offspring was determined well before conception.
Pangenesis was an idea that males and females formed "pangenes" in every organ. These pangenes subsequently
moved through their blood to the genitals and then to the children. The concept originated with the ancient Greeks,
and influenced biology until as recently as a century ago. The terms "blood relative," "bloodline," "full-blooded,"
and "royal blood" are relics of pangenesis. Francis Galton, Charles Darwin's cousin, experimentally tested and
disproved pangenesis during the 1870s.
Heredity                                                                                                                    173
    Types of heredity
    Dominant and recessive
    An allele is said to be dominant if it is always expressed in the appearance of an organism (phenotype). For example,
    in peas the allele for green pods, G, is dominant to that for yellow pods, g. Since the allele for green pods is
    dominant, pea plants with the pair of alleles GG (homozygote) or Gg (heterozygote) will have green pods. The allele
    for yellow pods is recessive. The effects of this allele are only seen when it is present in both chromosomes, gg
    (homozygote).
    The description of a mode of biological inheritance consists of three main categories:
           1. Number of involved loci
       • Monogenetic (also called "simple") – one locus
       • Oligogenetic – few loci
       • Polygenetic – many loci
           2. Involved chromosomes
       • Autosomal – loci are not situated on a sex chromosome
       • Gonosomal – loci are situated on a sex chromosome
         • X-chromosomal – loci are situated on the X chromosome (the more common case)
         • Y-chromosomal – loci are situated on the Y chromosome
       • Mitochondrial – loci are situated on the mitochondrial DNA
           3. Correlation genotype–phenotype
       • Dominant
       • Intermediate (also called "codominant")
       • Recessive
    These three categories are part of every exact description of a mode of inheritance in the above order. Additionally,
    more specifications may be added as follows:
           4. Coincidental and environmental interactions
       • Penetrance
         • Complete
         • Incomplete (percentual number)
       • Expressivity
         • Invariable
         • Variable
       • Heritability (in polygenetic and sometimes also in oligogenetic modes of inheritance)
       • Maternal or paternal imprinting phenomena (also see epigenetics)
           5. Sex-linked interactions
       •   Sex-linked inheritance (gonosomal loci)
       •   Sex-limited phenotype expression (e.g., cryptorchism)
       •   Inheritance through the maternal line (in case of mitochondrial DNA loci)
       •   Inheritance through the paternal line (in case of Y-chromosomal loci)
           6. Locus–locus interactions
       • Epistasis with other loci (e.g., overdominance)
       • Gene coupling with other loci (also see crossing over)
       • Homozygotous lethal factors
       • Semi-lethal factors
Heredity                                                                                                                         174
    Determination and description of a mode of inheritance is primarily achieved through statistical analysis of pedigree
    data. In case the involved loci are known, methods of molecular genetics can also be employed.
    The idea that speciation occurs after populations are reproductively isolated has been much debated. In plants,
    polyploidy must be included in any view of speciation. Formulations such as 'evolution consists primarily of changes
    in the frequencies of alleles between one generation and another' were proposed rather later. The traditional view is
    that developmental biology ('evo-devo') played little part in the synthesis, but an account of Gavin de Beer's work by
    Stephen Jay Gould suggests he may be an exception.[8]
    Almost all aspects of the synthesis have been challenged at times, with varying degrees of success. There is no
    doubt, however, that the synthesis was a great landmark in evolutionary biology. It cleared up many confusions, and
    was directly responsible for stimulating a great deal of research in the post-World War II era.
    Trofim Lysenko however caused a backlash of what is now called Lysenkoism in the Soviet Union when he
    emphasised Lamarckian ideas on the inheritance of acquired traits. This movement affected agricultural research and
    led to food shortages in the 1960s and seriously affected the USSR.
    See also
    • Genetics
    • Hard inheritance
    • Heritability
    External links
    • Stanford Encyclopedia of Philosophy entry on Heredity and Heritability (http://plato.stanford.edu/entries/
      heredity/)
Fitness                                                                                                                        176
    Fitness
    Fitness (often denoted in population genetics models) is a central idea in evolutionary theory. It can be defined
    either with respect to a genotype or to a phenotype. In either case, it is equal to the average contribution to the gene
    pool of the next generation that is made by an average individual of the specified genotype or phenotype. If
    differences between alleles at a given gene affect fitness, then the frequencies of the alleles will change over
    generations; the alleles with higher fitness become more common. This process is called natural selection.
    An individual's fitness is manifested through its phenotype. As phenotype is affected by both genes and environment,
    the fitnesses of different individuals with the same genotype are not necessarily equal, but depend on the
    environment in which the individuals live. However, since the fitness of the genotype is an averaged quantity, it will
    reflect the reproductive outcomes of all individuals with that genotype.
    Inclusive fitness differs from individual fitness by including the ability of an allele in one individual to promote the
    survival and/or reproduction of other individuals that share that allele, in preference to individuals with a different
    allele. One mechanism of inclusive fitness is kin selection.
    Measures of fitness
    There are two commonly used measures of fitness; absolute fitness and relative fitness.
    Absolute fitness
    Absolute fitness (       ) of a genotype is defined as the ratio between the number of individuals with that genotype
    after selection to those before selection. It is calculated for a single generation and may be calculated from absolute
    numbers or from frequencies. When the fitness is larger than 1.0, the genotype increases in frequency; a ratio smaller
    than 1.0 indicates a decrease in frequency.
    Absolute fitness for a genotype can also be calculated as the product of the proportion survival times the average
    fecundity.
    Relative fitness
    Relative fitness is quantified as the average number of surviving progeny of a particular genotype compared with
    average number of surviving progeny of competing genotypes after a single generation, i.e. one genotype is
    normalized at          and the fitnesses of other genotypes are measured with respect to that genotype. Relative
    fitness can therefore take any nonnegative value, including 0.
    While researchers can usually measure relative fitness, absolute fitness is more difficult. It is often difficult to
    determine how many individuals of a genotype there were immediately after reproduction.
    The two concepts are related, and both of them are equivalent when they are divided by the mean fitness, which is
    weighted by genotype frequencies.
    Because fitness is a coefficient, and a variable may be multiplied by it several times, biologists may work with "log
    fitness" (particularly so before the advent of computers). By taking the logarithm of fitness each term may be added
    rather than multiplied.
Fitness                                                                                                                        177
    Maynard-Smith's Definition
    As another example we may mention the definition of fitness given by Maynard Smith in the following way:
    "Fitness is a property, not of an individual, but of a class of individuals – for example homozygous for allele A at a
    particular locus. Thus the phrase ’expected number of offspring’ means the average number, not the number
    produced by some one individual. If the first human infant with a gene for levitation were struck by lightning in its
    pram, this would not prove the new genotype to have low fitness, but only that the particular child was unlucky." [1]
    Hartl's Definition
    Yet another possible measure has been formulated: "The fitness of the individual - having an array x of phenotypes
    - is the probability, s(x), that the individual will be included among the group selected as parents of the next
    generation." Then, the mean fitness may be determined as a mean over the set of individuals in a large population.
                                               [2]
    where N is the probability distribution function of phenotypes in the population, and m is its centre of gravity. This
    measure is a suitable basis of a model of an evolution selecting individuals. It may in principle take even the stroke
    of the lightning into consideration. In the case N is a Gaussian it is fairly easily proved that the average information
    (information entropy, disorder, diversity) of a large population may be maximized by Gaussian adaptation - keeping
    the mean fitness constant - in accordance with recapitulation, the central limit theorem, the Hardy-Weinberg law and
    the second law of thermodynamics. This is in contrast to Fisher's fundamental theorem of natural selection.
    History
    The British sociologist Herbert Spencer coined the phrase "survival of the fittest" (though originally, and perhaps
    more accurately, "survival of the best fitted") in his 1851 work Social Statics and later used it to characterise what
    Charles Darwin had called natural selection.
    The British biologist J.B.S. Haldane was the first to quantify fitness, in terms of the modern evolutionary synthesis
    of Darwinism and Mendelian genetics starting with his 1924 paper A Mathematical Theory of Natural and Artificial
    Selection. The next further advance was the introduction of the concept of inclusive fitness by the British biologist
    W.D. Hamilton in 1964 in his paper on The Evolution of Social Behavior.
    Fitness landscape
    A fitness landscape, first conceptualized by Sewall Wright, is a way of visualising fitness in terms of a
    high-dimensional surface, in which height indicates fitness, and each of the other dimensions represents allele
    identity for a different gene. Peaks correspond to local fitness maxima; it is often said that natural selection always
    progresses uphill but can only do so locally. This can result in suboptimal local maxima becoming stable, because
    natural selection cannot return to the less-fit "valleys" of the landscape on the way to reach higher peaks.
Fitness                                                                                                                  178
    Genetic load
    Genetic load measures the average fitness of a population of individuals, relative to a hypothetical population in
    which the most fit genotype has become fixed.
    See also
    •     Gene-centered view of evolution
    •     Inclusive fitness
    •     Natural selection
    •     Reproductive success
    •     Selection coefficient
    Notes
    [1] Maynard-Smith, J. (1989) Evolutionary Genetics ISBN 0198542151
    [2] Hartl, D. L. (1981) A Primer of Population Genetics ISBN 0878932712
    Further reading
    • Sober, E. (2001). The Two Faces of Fitness. In R. Singh, D. Paul, C. Krimbas, and J. Beatty (Eds.), Thinking
      about Evolution: Historical, Philosophical, and Political Perspectives. Cambridge University Press, pp.309-321.
      Full text (http://philosophy.wisc.edu/sober/tff.pdf)
    • Orr HA (August 2009). "Fitness and its role in evolutionary genetics" (http://www.pubmedcentral.nih.gov/
      articlerender.fcgi?tool=pmcentrez&artid=2753274). Nat. Rev. Genet. 10 (8): 531–9. doi:10.1038/nrg2603.
      PMID 19546856. PMC 2753274.
    External links
    • Evolution A-Z: Fitness (http://www.blackwellpublishing.com/ridley/a-z/Fitness.asp)
    • Stanford Encyclopedia of Philosophy entry (http://plato.stanford.edu/entries/fitness/)
Common descent                                                                                                                 179
    Common descent
    In evolutionary biology, a group of organisms have common descent if they have a common ancestor. "There is
    strong quantitative support, by a formal test"[1] for the theory that all living organisms on Earth are descended from a
    common ancestor.[2]
    Charles Darwin proposed the theory of universal common descent through an evolutionary process in On the Origin
    of Species, saying, "There is a grandeur in this view of life, with its several powers, having been originally breathed
    into a few forms or into one".[3]
    The last universal ancestor (LUA) (or last universal common ancestor, LUCA), that is, the most recent common
    ancestor of all currently living organisms,[1] is believed to have appeared about 3.9 billion years ago.[4] [5]
    In The Ancestor's Tale, Richard Dawkins coined the word concestor, as a substitute for common ancestor or most
    recent common ancestor. This new word is very gradually entering scientific parlance.[6]
    History
    In the 1740s, Pierre-Louis Moreau de Maupertuis made the first known suggestion in a series of essays that all
    organisms may have had a common ancestor, and that they had diverged through random variation and natural
    selection.[7] [8] In Essai de Cosmologie, Maupertuis noted:
          Could one not say that, in the fortuitous combinations of the productions of nature, as there must be
          some characterized by a certain relation of fitness which are able to subsist, it is not to be wondered at
          that this fitness is present in all the species that are currently in existence? Chance, one would say,
          produced an innumerable multitude of individuals; a small number found themselves constructed in such
          a manner that the parts of the animal were able to satisfy its needs; in another infinitely greater number,
          there was neither fitness nor order: all of these latter have perished. Animals lacking a mouth could not
          live; others lacking reproductive organs could not perpetuate themselves ... The species we see today are
          but the smallest part of what blind destiny has produced ...[9]
    In 1790, Immanuel Kant wrote in Kritik der Urtheilskraft (Critique of Judgement) that the analogy of animal forms
    implies a common original type, and thus a common parent.[10]
    In 1795, Charles Darwin's grandfather, Erasmus Darwin, asked:
          [W]ould it be too bold to imagine, that in the great length of time, since the earth began to exist, perhaps
          millions of ages before the commencement of the history of mankind, would it be too bold to imagine,
          that all warm-blooded animals have arisen from one living filament, which the great First Cause endued
          with animality, with the power of acquiring new parts attended with new propensities, directed by
          irritations, sensations, volitions, and associations; and thus possessing the faculty of continuing to
          improve by its own inherent activity, and of delivering down those improvements by generation to its
          posterity, world without end?[11]
    In 1859, Charles Darwin's The Origin of Species was published. The views about common descent expressed therein
    were that it was possible that there was only one progenitor for all life forms.
          "Therefore I should infer from analogy that probably all the organic beings which have ever lived on this
          earth have descended from some one primordial form, into which life was first breathed." [3] (p 484)
    Darwin's famous closing sentence describes the "grandeur in this view of life, with its several powers, having been
    originally breathed into a few forms or into one."[3] (p 490)
Common descent                                                                                                                  180
    Other similarities
    The universality of many aspects of cellular life is often pointed to as supportive evidence to the more compelling
    evidence listed above. These similarities include the energy carrier adenosine triphosphate (ATP), and the fact that
    all amino acids found in proteins are left-handed. It is possible that these similarities resulted because of the laws of
    physics and chemistry, rather than universal common descent and therefore resulted in convergent evolution.
    Phylogenetic trees
    Another important piece of evidence is
    that it is possible to construct detailed
    phylogenetic trees (that is, "genealogic
    trees" of species) mapping out the
    proposed divisions and common
    ancestors of all living species. In 2010
    an analysis of available genetic data,
    mapping them to phylogenetic trees,
    gave "firm quantitative support for the
    unity of life. ...there is now strong
    quantitative support, by a formal
    test,[1] for the unity of life.[2]
    Recently, it has been possible to construct these trees using molecular data, based on similarities and differences
    between genetic and protein sequences. All these methods produce essentially similar results, even though that most
    genetic variation has no influence over external morphology. That phylogenetic trees based on different types of
    information agree with each other is strong evidence of a real underlying common descent.[14]
    Artificial selection
    Artificial selection demonstrates the diversity that can exist among organisms that share a relatively recent common
    ancestor. In artificial selection, one species is bred selectively at each generation, allowing only those organisms that
    exhibit desired characteristics to reproduce. These characteristics become increasingly well-developed in successive
    generations. Artificial selection was successful long before science discovered the genetic basis.
Dog breeding
Wild cabbage
    Natural selection
    Natural selection is the evolutionary process by which heritable traits
    that increase an individual's fitness become more common, and
    heritable traits that decrease an individual's fitness become less
    common.
Darwin's finches
    References
    [1] Theobald, D.L., Nature 465, 219-222, (2010)
    [2] Steel, M. & Penny, D., Nature 465,168 (2010)
    [3] Darwin, C., "The Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle For Life", London,
        John Murrary, (1859) p. 490
    [4] Doolittle, W. Ford (February, 2000). Uprooting the tree of life (http:/ / shiva. msu. montana. edu/ courses/ mb437_537_2004_fall/ docs/
        uprooting. pdf). Scientific American 282 (6): 90–95.
    [5] Nicolas Glansdorff, Ying Xu & Bernard Labedan: The Last Universal Common Ancestor : emergence, constitution and genetic legacy of an
        elusive forerunner. Biology Direct 2008, 3:29.
    [6] Singham, Mano (October 13, 2006). "Looking for Deep Ancestors" (http:/ / machineslikeus. com/ articles/ LookingForDeep. html). Machines
        Like Us. . Retrieved November 19, 2009.
    [7] J. S. Bromley, The new Cambridge modern history: The rise of Great Britain and Russia, 1688-1715/25 (http:/ / books. google. com/
        books?id=OOgzAAAAIAAJ& pg=PA62& dq=Maupertuis+ "for+ the+ first+ time"& cd=1#v=onepage& q=Maupertuis "for the first time"&
        f=false), CUP Archive, 1970, ISBN 9780521075244, pgs. 62-63.
    [8] Geoffrey Russell Richards Treasure, The making of modern Europe, 1648-1780 (http:/ / books. google. com/ books?id=C94OAAAAQAAJ&
        pg=PA142& dq="blind+ destiny+ has+ produced"& cd=6#v=onepage& q="blind destiny has produced"& f=false), Taylor & Francis, 1985,
        ISBN 9780416723700, pg. 142
    [9] C. Leon Harris, Evolution, genesis and revelations, with readings from Empedocles to Wilson (http:/ / books. google. com/
        books?id=Fkqg3TIkBJwC& pg=PA107& dq=Essai+ de+ Cosmologie+ "blind+ destiny"& cd=1#v=onepage& q=Essai de Cosmologie "blind
        destiny"& f=false), SUNY Press, 1981, ISBN 9780873954877, pg. 107
    [10] Immanuel Kant and Werner S. Pluhar, Critique of Judgment (http:/ / books. google. com/ books?id=y5wQD-ioaUUC& pg=PA304&
        dq=Critique+ of+ Judgment+ "original+ mother"& cd=1#v=onepage& q=& f=false), Hackett Publishing, 1987, ISBN 9780872200258, p. 304:
        "Despite all the variety among these forms, they seem to have been produced according to a common archetype, and this analogy among them
        reinforces our suspicion that they are actually akin, produced by a common original mother."
    [11] Darwin, Erasmus (1818) [1795]. "Generation" (http:/ / books. google. com/ ?id=XRUaAAAAMAAJ& printsec=frontcover& q=).
        Zoonomia; or the Laws of Organic Life. 1 (4th American ed.). Philadelphia: Edward Earle. p. 397 [§ 39.4.8]. . Retrieved November 20, 2009.
    [12] Knight, Robin, et al. (January 2001). "Rewiring the Keyboard: Evolvability of the Genetic Code". Nature Reviews Genetics 2 (1): 49–58.
        doi:10.1038/35047500. PMID 11253070.
    [13] Theobald, Douglas L. (13 May 2010). "A formal test of the theory of universal common ancestry.". Nature 465 (7295): 219–222.
        doi:10.1038/nature09014. PMID 20463738.
    [14] Theobald, Douglas (2004). "Prediction 1.3: Consilience of Independent Phylogenies" (http:/ / www. talkorigins. org/ faqs/ comdesc/
        section1. html#independent_convergence). 29+ Evidences for Macroevolution. TalkOrigins Foundation. . Retrieved November 20, 2009.
Common descent                                                                                                                                183
    [15] Raven, Peter H., et al. (2005). Biology of Plants (7th rev. ed.). New York: W.H. Freeman. ISBN 0716762846. OCLC 183148564. "[These
        vegetables were] all produced from a single species of plant (Brassica oleraca), a member of the mustard family."
    External links
    • 29+ Evidences for Macroevolution: the Scientific Case for Common Descent (http://www.talkorigins.org/faqs/
      comdesc/). From the TalkOrigins Archive
    • The Tree of Life Web Project (http://tolweb.org/tree/phylogeny.html)
    common descent extends from direct laboratory and experimentation with the artificial selection of
    organisms—historically and currently—and other controlled experiments involving many of the topics in the article.
    This article explains the different types of evidence for evolution with common descent along with many specialized
    examples of each.
    Genetics
    Although it has only recently become available, one of
    the strongest evidences for common descent comes
    from the study of gene sequences. Comparative
    sequence analysis examines the relationship between
    the DNA sequences of different species,[1] producing
    several lines of evidence that confirm Darwin's original
    hypothesis of common descent. If the hypothesis of
    common descent is true, then species that share a
    common ancestor will have inherited that ancestor's
    DNA sequence. Notably they will have inherited
    mutations unique to that ancestor. More closely-related
                                                                  While on board HMS Beagle, Charles Darwin collected numerous
    species will have a greater fraction of identical            specimens, many new to science, which supported his later theory of
    sequence and will have shared substitutions when                              evolution by natural selection.
    compared to more distantly-related species.
    The simplest and most powerful evidence is provided by phylogenetic reconstruction. Such reconstructions,
    especially when done using slowly-evolving protein sequences, are often quite robust and can be used to reconstruct
    a great deal of the evolutionary history of modern organisms (and even in some instances such as the recovered gene
    sequences of mammoths, Neanderthals or T. rex, the evolutionary history of extinct organisms). These reconstructed
    phylogenies recapitulate the relationships established through morphological and biochemical studies. The most
    detailed reconstructions have been performed on the basis of the mitochondrial genomes shared by all eukaryotic
    organisms, which are short and easy to sequence; the broadest reconstructions have been performed either using the
    sequences of a few very ancient proteins or by using ribosomal RNA sequence.
    This evidence does not support the rival hypothesis that genetic similarity of two species is the product of common
    functional or structural requirements, and not common descent (for example, if there is one best way to produce a
    hoof, all hoofed creatures will share a genetic basis even if they are not related). However, phylogenetic relationships
    also extend to a wide variety of nonfunctional sequence elements, including repeats, transposons, pseudogenes, and
    mutations in protein-coding sequences that do not result in changes in amino-acid sequence. While a minority of
    these elements might later be found to harbor function, in aggregate they demonstrate that identity must be the
    product of common descent rather than common function.
    separate occasions, they share a common set of light-sensing proteins (opsins), suggesting a common point of origin
    for all sighted creatures.[2] Another noteworthy example is the familiar vertebrate body plan, whose structure is
    controlled by the homeobox (Hox) family of genes.
    DNA sequencing
    Comparison of the DNA sequences allows organisms to be grouped by sequence similarity, and the resulting
    phylogenetic trees are typically congruent with traditional taxonomy, and are often used to strengthen or correct
    taxonomic classifications. Sequence comparison is considered a measure robust enough to be used to correct
    erroneous assumptions in the phylogenetic tree in instances where other evidence is scarce. For example, neutral
    human DNA sequences are approximately 1.2% divergent (based on substitutions) from those of their nearest
    genetic relative, the chimpanzee, 1.6% from gorillas, and 6.6% from baboons.[3] Genetic sequence evidence thus
    allows inference and quantification of genetic relatedness between humans and other apes.[4] [5] The sequence of the
    16S ribosomal RNA gene, a vital gene encoding a part of the ribosome, was used to find the broad phylogenetic
    relationships between all extant life. The analysis, originally done by Carl Woese, resulted in the three-domain
    system, arguing for two major splits in the early evolution of life. The first split led to modern Bacteria and the
    subsequent split led to modern Archaea and Eukaryotes.
    Proteins
    The proteomic evidence also supports the universal ancestry of life. Vital proteins, such as the ribosome, DNA
    polymerase, and RNA polymerase, are found in everything from the most primitive bacteria to the most complex
    mammals. The core part of the protein is conserved across all lineages of life, serving similar functions. Higher
    organisms have evolved additional protein subunits, largely affecting the regulation and protein-protein interaction
    of the core. Other overarching similarities between all lineages of extant organisms, such as DNA, RNA, amino
    acids, and the lipid bilayer, give support to the theory of common descent. The chirality of DNA, RNA, and amino
    acids is conserved across all known life. As there is no functional advantage to right- or left-handed molecular
    chirality, the simplest hypothesis is that the choice was made randomly by early organisms and passed on to all
    extant life through common descent. Further evidence for reconstructing ancestral lineages comes from junk DNA
    such as pseudogenes, "dead" genes which steadily accumulate mutations.[6]
    Pseudogenes
    Pseudogenes also known, as Junk DNA, or dead DNA is the extra DNA that is in our genome but does not get
    transcribed into RNA to produce protein. This is an example of a vestige since reproducing these genes uses energy
    and is a waste, yet 99% of our genome is these (1% working DNA).[7] The way a pseudogene is produced is a gene
    that is no longer used will accumulate mutations that make it non-functional but since it is not used; when it
    disappears, it does not affect fitness.
    Other mechanisms
    There is also a large body of molecular evidence for a number of different mechanisms for large evolutionary
    changes, among them: genome and gene duplication, which facilitates rapid evolution by providing substantial
    quantities of genetic material under weak or no selective constraints; horizontal gene transfer, the process of
    transferring genetic material to another cell that is not an organism's offspring, allowing for species to acquire
    beneficial genes from each other; and recombination, capable of reassorting large numbers of different alleles and of
    establishing reproductive isolation. The Endosymbiotic theory explains the origin of mitochondria and plastids (e.g.
    chloroplasts), which are organelles of eukaryotic cells, as the incorporation of an ancient prokaryotic cell into ancient
    eukaryotic cell. Rather than evolving eukaryotic organelles slowly, this theory offers a mechanism for a sudden
    evolutionary leap by incorporating the genetic material and biochemical composition of a separate species. Evidence
    supporting this mechanism has recently been found in the protist Hatena: as a predator it engulfs a green algae cell,
Evidence of common descent                                                                                                         186
    which subsequently behaves as an endosymbiont, nourishing Hatena, which in turn loses its feeding apparatus and
    behaves as an autotroph.[8] [9]
    Since metabolic processes do not leave fossils, research into the evolution of the basic cellular processes is done
    largely by comparison of existing organisms. Many lineages diverged when new metabolic processes appeared, and
    it is theoretically possible to determine when certain metabolic processes appeared by comparing the traits of the
    descendants of a common ancestor or by detecting their physical manifestations. As an example, the appearance of
    oxygen in the earth's atmosphere is linked to the evolution of photosynthesis.
Specific examples
Chromosome 2 in humans
    Cytochrome c
    A classic example of biochemical evidence for evolution is the variance of the ubiquitous (i.e. all living organisms
    have it, because it performs very basic life functions) protein Cytochrome c in living cells. The variance of
    cytochrome c of different organisms is measured in the number of differing amino acids, each differing amino acid
    being a result of a base pair substitution, a mutation. If each differing amino acid is assumed to be the result of one
    base pair substitution, it can be calculated how long ago the two species diverged by multiplying the number of base
    pair substitutions by the estimated time it takes for a substituted base pair of the cytochrome c gene to be
    successfully passed on. For example, if the average time it takes for a base pair of the cytochrome c gene to mutate is
    N years, the number of amino acids making up the cytochrome c protein in monkeys differ by one from that of
    humans, this leads to the conclusion that the two species diverged N years ago.
    The primary structure of cytochrome c consists of a chain of about 100 amino acids. Many higher order organisms
    possess a chain of 104 amino acids.[16]
Evidence of common descent                                                                                                                                 187
    The cytochrome c molecule has been extensively studied for the glimpse it gives into evolutionary biology. Both
    chicken and turkeys have identical sequence homology (amino acid for amino acid), as do pigs, cows and sheep.
    Both humans and chimpanzees share the identical molecule, while rhesus monkeys share all but one of the amino
    acids:[17] the 66th amino acid is isoleucine in the former and threonine in the latter.[16]
    What makes these homologous similarities particularly suggestive of common ancestry in the case of cytochrome C,
    in addition to the fact that the phylogenies derived from them match other phylogenies very well, is the high degree
    of functional redundancy of the cytochrome C molecule. The different existing configurations of amino acids do not
    significantly affect the functionality of the protein, which indicates that the base pair substitutions are not part of a
    directed design, but the result of random mutations that aren't subject to selection.[18]
   “
     All the foregoing rules and aids and difficulties in classification are explained, if I do not greatly deceive myself, on the view that the natural
     system is founded on descent with modification; that the characters which naturalists consider as showing true affinity between any two or
                                                                                                                                                  ”
     more species, are those which have been inherited from a common parent, and, in so far, all true classification is genealogical; that community
     of descent is the hidden bond which naturalists have been unconsciously seeking, ...
    Vestigial structures
    A strong and direct evidence for common descent comes from vestigial structures.[23] Rudimentary body parts, those
    that are smaller and simpler in structure than corresponding parts in the ancestral species, are called vestigial organs.
    They are usually degenerated or underdeveloped. The existence of vestigial organs can be explained in terms of
    changes in the environment or modes of life of the species. Those organs are thought to be functional in the ancestral
    species but are now either nonfunctional or repurposed. Examples are the pelvic girdles of whales, haltere (hind
    wings) of flies and mosquitos, wings of flightless birds such as ostriches, and the leaves of some xerophytes (e.g.
    cactus) and parasitic plants (e.g. dodder). It must be noted, however, that vestigial structures may have had their
    original function replaced with another. For example the halteres in dipterists help balance the insect while in flight
    and the wings of ostriches are used in mating rituals.
   “
     The most reasonable conclusion to draw is that these creatures descended from creatures in which these parts were functional, which in turn
     indicates that most (or indeed all) creatures descended from common ancenstors.
                                                                                                                                             ”
                                                                                               —Natan Slifkin, The Challenge of Creation, page 262
    Atavisms
    An atavism is an evolutionary throwback, such as traits reappearing which had disappeared generations ago.[26]
    Atavisms occur because genes for previously existing phenotypical features are often preserved in DNA, even
    though the genes are not expressed in some or most of the organisms possessing them.[27] Some examples of this are
    hind-legged snakes or whales;[26] [28] [29] the extra toes of ungulates that do not even reach the ground,[30] chicken's
    teeth,[31] reemergence of sexual reproduction in Hieracium pilosella and Crotoniidae;[32] and humans with tails,[26]
    extra nipples,[28] and large canine teeth.[28]
Specific examples
    Figure 5a: The principle of homology illustrated by the adaptive radiation of the forelimb of mammals. All conform
    to the basic pentadactyl pattern but are modified for different usages. The third metacarpal is shaded throughout; the
    shoulder is crossed-hatched.
Evidence of common descent                                                                                                    190
    Figure 5b: Illustration of the Eoraptor lunensis pelvis of the saurischian order and the Lesothosaurus diagnosticus
    pelvis of the ornithischian order in the Dinosauria superorder. The parts of the pelvis show modification over time.
    The cladogram is shown to illustrate the distance of divergence between the two species.
    Figure 5c: Adaptation of insect mouthparts: a, antennae; c, compound eye; lb, labrium; lr, labrum; md, mandibles;
    mx, maxillae.
    Pentadactyl limb
    The pattern of limb bones called pentadactyl limb is an example of homologous structures (Fig. 5a). It is found in all
    classes of tetrapods (i.e. from amphibians to mammals). It can even be traced back to the fins of certain fossil fishes
    from which the first amphibians are thought to have evolved such as tiktaalik. The limb has a single proximal bone
    (humerus), two distal bones (radius and ulna), a series of carpals (wrist bones), followed by five series of
    metacarpals (palm bones) and phalanges (digits). Throughout the tetrapods, the fundamental structures of
    pentadactyl limbs are the same, indicating that they originated from a common ancestor. But in the course of
    evolution, these fundamental structures have been modified. They have become superficially different and unrelated
    structures to serve different functions in adaptation to different environments and modes of life. This phenomenon is
    clearly shown in the forelimbs of mammals. For example:
    • In the monkey, the forelimbs are much elongated to form a grasping hand for climbing and swinging among trees.
    • In the pig, the first digit is lost, and the second and fifth digits are reduced. The remaining two digits are longer
      and stouter than the rest and bear a hoof for supporting the body.
    • In the horse, the forelimbs are adapted for support and running by great elongation of the third digit bearing a
      hoof.
    • The mole has a pair of short, spade-like forelimbs for burrowing.
    • The anteater uses its enlarged third digit for tearing down ant hills and termite nests.
    • In the whale, the forelimbs become flippers for steering and maintaining equilibrium during swimming.
    • In the bat, the forelimbs have turned into wings for flying by great elongation of four digits, while the hook-like
      first digit remains free for hanging from trees.
Evidence of common descent                                                                                                                  191
    Insect mouthparts
    The basic structures are the same, including a labrum (upper lip), a pair of mandibles, a hypopharynx (floor of
    mouth), a pair of maxillae, and a labium. These structures are enlarged and modified; others are reduced and lost.
    The modifications enable the insects to exploit a variety of food materials (Fig. 5c):
    (A) Primitive state — biting and chewing: e.g. grasshopper. Strong mandibles and maxillae for manipulating food.
    (B) Ticking and biting: e.g. honey bee. Labium long to lap up nectar; mandibles chew pollen and mould wax. (C)
    Sucking: e.g. butterfly. Labrum reduced; mandibles lost; maxillae long forming sucking tube. (D) Piercing and
    sucking, e.g.. female mosquito. Labrum and maxillae form tube; mandibles form piercing stylets; labrum grooved to
    hold other parts.
    For fossilization to take place, the traces and remains of organisms must
    be quickly buried so that weathering and decomposition do not occur.
    Skeletal structures or other hard parts of the organisms are the most
    commonly occurring form of fossilized remains (Paul, 1998),
    (Behrensmeyer, 1980) and (Martin, 1999). There are also some trace
    "fossils" showing moulds, cast or imprints of some previous organisms.
                                                                                                  An insect trapped in amber.
    As an animal dies, the organic materials gradually decay, such that the
    bones become porous. If the animal is subsequently buried in mud, mineral salts will infiltrate into the bones and
    gradually fill up the pores. The bones will harden into stones and be preserved as fossils. This process is known as
    petrification. If dead animals are covered by wind-blown sand, and if the sand is subsequently turned into mud by
    heavy rain or floods, the same process of mineral infiltration may occur. Apart from petrification, the dead bodies of
    organisms may be well preserved in ice, in hardened resin of coniferous trees (amber), in tar, or in anaerobic, acidic
    peat. Fossilization can sometimes be a trace, an impression of a form. Examples include leaves and footprints, the
Evidence of common descent                                                                                                             193
    Fossil record
                                                         It is possible to find out how a particular group of organisms evolved by
                                                         arranging its fossil records in a chronological sequence. Such a
                                                         sequence can be determined because fossils are mainly found in
                                                         sedimentary rock. Sedimentary rock is formed by layers of silt or mud
                                                         on top of each other; thus, the resulting rock contains a series of
                                                         horizontal layers, or strata. Each layer contains fossils which are typical
                                                         for a specific time period during which they were made. The lowest
                                                         strata contain the oldest rock and the earliest fossils, while the highest
                                                         strata contain the youngest rock and more recent fossils.
                                                         A succession of animals and plants can also be seen from fossil records.
                                                         By studying the number and complexity of different fossils at different
                                                         stratigraphic levels, it has been shown that older fossil-bearing rocks
                                                         contain fewer types of fossilized organisms, and they all have a simpler
       Fossil trilobite. Trilobites were hard-shelled
     arthropods, related to living horseshoe crabs and
                                                         structure, whereas younger rocks contain a greater variety of fossils,
         spiders, that first appeared in significant     often with increasingly complex structures.
      numbers around 540 mya, dying out 250 mya.
                                                  In the past, geologists could only roughly estimate the ages of various
                                                  strata and the fossils found. They did so, for instance, by estimating the
    time for the formation of sedimentary rock layer by layer. Today, by measuring the proportions of radioactive and
    stable elements in a given rock, the ages of fossils can be more precisely dated by scientists. This technique is known
    as radiometric dating.
    Throughout the fossil record, many species that appear at an early stratigraphic level disappear at a later level. This is
    interpreted in evolutionary terms as indicating the times at which species originated and became extinct.
    Geographical regions and climatic conditions have varied throughout the Earth's history. Since organisms are
    adapted to particular environments, the constantly changing conditions favoured species which adapted to new
    environments through the mechanism of natural selection.
    Charles Darwin collected fossils in South America, and found fragments of armor which he thought were like giant
    versions of the scales on the modern armadillos living nearby. The anatomist Richard Owen showed him that the
    fragments were from gigantic extinct glyptodons, related to the armadillos. This was one of the patterns of
    distribution that helped Darwin to develop his theory.[36]
Evidence of common descent                                                                                                           194
    Limitations
    The fossil record is an important source for scientists when tracing the evolutionary history of organisms. However,
    because of limitations inherent in the record, there are not fine scales of intermediate forms between related groups
    of species. This lack of continuous fossils in the record is a major limitation in tracing the descent of biological
    groups. Furthermore, there are also much larger gaps between major evolutionary lineages. When transitional fossils
    are found that show intermediate forms in what had previously been a gap in knowledge, they are often popularly
    referred to as "missing links".
    There is a gap of about 100 million years between the beginning of the Cambrian period and the end of the
    Ordovician period. The early Cambrian period was the period from which numerous fossils of sponges, cnidarians
    (e.g., jellyfish), echinoderms (e.g., eocrinoids), molluscs (e.g., snails) and arthropods (e.g., trilobites) are found. The
    first animal that possessed the typical features of vertebrates, the Arandaspis, was dated to have existed in the later
    Ordovician period. Thus few, if any, fossils of an intermediate type between invertebrates and vertebrates have been
    found, although likely candidates include the Burgess Shale animal, Pikaia gracilens, and its Maotianshan shales
    relatives, Myllokunmingia, Yunnanozoon, Haikouella lanceolata, and Haikouichthys.
    Some of the reasons for the incompleteness of fossil records are:
    • In general, the probability that an organism becomes fossilized is very low;
    • Some species or groups are less likely to become fossils because they are soft-bodied;
    • Some species or groups are less likely to become fossils because they live (and die) in conditions that are not
      favourable for fossilization;
    • Many fossils have been destroyed through erosion and tectonic movements;
    • Most fossils are fragmentary;
    • Some evolutionary change occurs in populations at the limits of a species' ecological range, and as these
      populations are likely to be small, the probability of fossilization is lower (see punctuated equilibrium);
    • Similarly, when environmental conditions change, the population of a species is likely to be greatly reduced, such
      that any evolutionary change induced by these new conditions is less likely to be fossilized;
    • Most fossils convey information about external form, but little about how the organism functioned;
    • Using present-day biodiversity as a guide, this suggests that the fossils unearthed represent only a small fraction
      of the large number of species of organisms that lived in the past.
Evidence of common descent                                                                                                                     195
Specific examples
    Continental distribution
    All organisms are adapted to their environment to a greater or lesser extent. If the abiotic and biotic factors within a
    habitat are capable of supporting a particular species in one geographic area, then one might assume that the same
    species would be found in a similar habitat in a similar geographic area, e.g. in Africa and South America. This is not
    the case. Plant and animal species are discontinuously distributed throughout the world:
    • Africa has Old World monkeys, apes, elephants, leopards, giraffes, and hornbills.
    • South America has New World monkeys, cougars, jaguars, sloths, llamas, and toucans.
    • Deserts in North and South America have native cacti, but deserts in Africa, Asia, and Australia have succulent
      native euphorbs that resemble cacti but are very different, even though in some cases cacti have done very well
      (for example in Australian deserts) when introduced by humans.[41]
    Even greater differences can be found if Australia is taken into consideration, though it occupies the same latitude as
    much of South America and Africa. Marsupials like kangaroos, bandicoots, and quolls make up about half of
    Australia's indigenous mammal species.[42] By contrast, marsupials are today totally absent from Africa and form a
    smaller portion of the mammalian fauna of South America, where opossums, shrew opossums, and the monito del
    monte occur. The echidnas and platypus, the only living representatives of primitive egg-laying mammals
    (monotremes), can be found only in Australia and are totally absent in the rest of the world. On the other hand,
    Australia is missing many groups of placental mammals that are common on other continents (carnivorans,
    artiodactyls, shrews, squirrels, lagomorphs), although it does have indigenous bats and murine rodents; many other
    placentals, such as rabbits and foxes, have been introduced there by humans.
    Other animal distribution examples include bears, located on all continents excluding Africa and Australia, and the
    polar bear only located nearest to the North Pole. Penguins are located only around the South Pole despite similar
    weather conditions at the North Pole. Families of sirenians are distributed exclusively around the earth’s waters,
    where manatees are located in western Africa waters, northern South American waters, and West Indian waters only
    while the related family, the Dugongs, are located only in Oceanic waters north of Australia, and the coasts
    surrounding the Indian Ocean.
    The same kinds of fossils are found from areas known to be adjacent to one another in the past but which, through
    the process of continental drift, are now in widely divergent geographic locations. For example, fossils of the same
    types of ancient amphibians, arthropods and ferns are found in South America, Africa, India, Australia and
    Antarctica, which can be dated to the Paleozoic Era, at which time these regions were united as a single landmass
    called Gondwana.[43] Sometimes the descendants of these organisms can be identified and show unmistakable
    similarity to each other, even though they now inhabit very different regions and climates.
Evidence of common descent                                                                                                               197
Island biogeography
    islands) but often (for example Hawaii) they do not. This despite
    the fact that when species such as rats, goats, pigs, cats, mice, and cane toads, are introduced to such islands by
    humans they often thrive. Starting with Charles Darwin, many scientists have conducted experiments and made
    observations that have shown that the types of animals and plants found, and not found, on such islands are
    consistent with the theory that these islands were colonized accidentally by plants and animals that were able to
    reach them. Such accidental colonization could occur by air, such as plant seeds carried by migratory birds, or bats
    and insects being blown out over the sea by the wind, or by floating from a continent or other island by sea, as for
    example by some kinds of plant seeds like coconuts that can survive immersion in salt water, and reptiles that can
    survive for extended periods on rafts of vegetation carried to sea by storms.[]
    Endemism
    Many of the species found on remote islands are endemic to a particular island or group of islands, meaning they are
    found nowhere else on earth. Examples of species endemic to islands include many flightless birds of New Zealand,
    lemurs of Madagascar, the Komodo dragon of Komodo ,[44] the Dragon’s blood tree of Socotra ,[45] Tuatara of New
    Zealand,[46] [47] and others. However many such endemic species are related to species found on other nearby islands
    or continents; the relationship of the animals found on the Galapagos Islands to those found in South America is a
    well-known example.[] All of these facts, the types of plants and animals found on oceanic islands, the large number
    of endemic species found on oceanic islands, and the relationship of such species to those living on the nearest
    continents, are most easily explained if the islands were colonized by species from nearby continents that evolved
    into the endemic species now found there.[48]
    Other types of endemism do not have to include, in the strict sense, islands. Islands can mean isolated lakes or
    remote and isolated areas. Examples of these would include the highlands of Ethiopia, Lake Baikal, Fynbos of South
    Africa, forests of New Caledonia, and others. Examples of endemic organisms living in isolated areas include the
    Kagu of New Caledonia,[49] cloud rats of the Luzon tropical pine forests of the Philippines,[50] [51] the boojum tree
    (Fouquieria columnaris) of the Baja California peninsula,[52] the Baikal Seal[53] and the omul of Lake Baikal.
Evidence of common descent                                                                                                       198
    Adaptive radiations
    Oceanic islands are frequently inhabited by clusters of closely related species that fill a variety of ecological niches,
    often niches that are filled by very different species on continents. Such clusters, like the Finches of the Galapagos,
    Hawaiian honeycreepers, members of the sunflower family on the Juan Fernandez Archipelago and wood weevils on
    St. Helena are called adaptive radiations because they are best explained by a single species colonizing an island (or
    group of islands) and then diversifying to fill available ecological niches. Such radiations can be spectacular; 800
    species of the fruit fly family Drosophila, nearly half the world's total, are endemic to the Hawaiian islands. Another
    illustrative example from Hawaii is the Silversword alliance, which is a group of thirty species found only on those
    islands. Members range from the Silverswords that flower spectacularly on high volcanic slopes to trees, shrubs,
    vines and mats that occur at various elevations from mountain top to sea level, and in Hawaiian habitats that vary
    from deserts to rainforests. Their closest relatives outside Hawaii, based on molecular studies, are tarweeds found on
    the west coast of North America. Interestingly, these tarweeds have sticky seeds that facilitate distribution by
    migrant birds. Continental islands have less distinct biota, but those that have been long separated from any continent
    also have endemic species and adaptive radiations, such as the 75 lemur species of Madagascar, and the eleven
    extinct moa species of New Zealand.[] [54]
    Ring Species
    In biology, a ring species is a connected series of neighboring populations that can interbreed with relatively closely
    related populations, but for which there exist at least two "end" populations in the series that are too distantly related
    to interbreed. Often such non-breeding-though-genetically-connected populations co-exist in the same region thus
    creating a "ring". Ring species provide important evidence of evolution in that they illustrate what happens over time
    as populations genetically diverge, and are special because they represent in living populations what normally
    happens over time between long deceased ancestor populations and living populations. If any of the populations
    intermediate between the two ends of the ring were gone they would not be a continuous line of reproduction and
    each side would be a different species.[55] [56]
Specific examples
    Figure 6a: A dymaxion map of the world showing the distribution of present species of camelid. The solid black
    lines indicate migration routes and the blue represents current camel locations.
Evidence of common descent                                                                                                  199
    Figure 6b: Current distribution of Glossopteris placed on a Permian map showing the connection of the continents.
    (1, South America; 2, Africa; 3, Madagascar; 4, India; 5, Antarctica; and 6, Australia)
Figure 6c: Present day distribution of marsupials. (Distribution shown in blue. Introduced areas shown in green.)
    Distribution of Glossopteris
    The combination of continental drift and evolution can sometimes be used to make predictions about what will be
    found in the fossil record. Glossopteris is an extinct species of seed fern plants from the Permian. Glossopteris
    appears in the fossil record around the beginning of the Permian on the ancient continent of Gondwana. Continental
    drift explains the current biogeography of the tree. Present day Glossopteris fossils are found in Permian strata in
    southeast South America, southeast Africa, all of Madagascar, northern India, all of Australia, all of New Zealand,
    and scattered on the southern and northern edges of Antarctica. During the Permian, these continents were connected
    as Gondwana (see figure 6b) in agreement with magnetic striping, other fossil distributions, and glacial scratches
    pointing away from the temperate climate of the South Pole during the Permian.[48]
Evidence of common descent                                                                                                    200
    Distribution of marsupials
    The history of marsupials also provides an example of how the theories of evolution and continental drift can be
    combined to make predictions about what will be found in the fossil record. The earliest marsupial fossils are about
    80 million years old and found in North America; by 40 million years ago fossils show that they could be found
    throughout South America, but there is no evidence of them in Australia, where they now predominate, until about
    30 million years ago. The theory of evolution predicts that the Australian marsupials must be descended from the
    older ones found in the Americas. The theory of continental drift says that between 30 and 40 million years ago
    South America and Australia were still part of the Southern hemisphere super continent of Gondwana and that they
    were connected by land that is now part of Antarctica. Therefore combining the two theories scientists predicted that
    marsupials migrated from what is now South America across what is now Antarctica to what is now Australia
    between 40 and 30 million years ago. This hypothesis led paleontologists to Antarctica to look for marsupial fossils
    of the appropriate age. After years of searching they found, starting in 1982, fossils on Seymour Island off the coast
    of the Antarctic Peninsula of more than a dozen marsupial species that lived 35-40 million years ago.[41]
    Humans
    Natural selection is being observed in contemporary human populations, with recent findings demonstrating the
    population which is at risk of the severe debilitating disease kuru has significant over-representation of an immune
    variant of the prion protein gene G127V versus non-immune alleles. Scientists postulate one of the reasons for the
    rapid selection of this genetic variant is the lethality of the disease in non-immune persons.[60] [61] Other reported
    evolutionary trends in other populations include a lengthening of the reproductive period, reduction in cholesterol
    levels, blood glucose and blood pressure.[62]
    Nylon-eating bacteria
    Nylon-eating bacteria are a strain of Flavobacterium that is capable of digesting certain byproducts of nylon 6
    manufacture. There is scientific consensus that the capacity to synthesize nylonase most probably developed as a
    single-step mutation that survived because it improved the fitness of the bacteria possessing the mutation. This is
    seen as a good example of evolution through mutation and natural selection that has been observed as it occurs.[65]
    [66] [67] [68]
    Peppered moth
    One classic example of adaptation in response to selection pressure is the case of the peppered moth. The color of the
    moth has gone from light to dark to light again over the course of a few hundred years due to the appearance and
    later disappearance of pollution from the Industrial Revolution in England.
    Radiotrophic fungus
    Recently evolved Radiotrophic fungi are fungi which appear to use the pigment melanin to convert gamma radiation
    into chemical energy for growth[69] [70] and were first discovered in 2007 as black molds growing inside and around
    the Chernobyl Nuclear Power Plant.[69] Research at the Albert Einstein College of Medicine showed that three
    melanin-containing fungi, Cladosporium sphaerospermum, Wangiella dermatitidis, and Cryptococcus neoformans,
    increased in biomass and accumulated acetate faster in an environment in which the radiation level was 500 times
    higher than in the normal environment.
    Urban wildlife
    Urban wildlife is wildlife that is able to live or thrive in urban environments. These types of environments can exert
    selection pressures on organism, often leading to new adaptations. For example, the weed Crepis sancta, found in
    France, has two types of seed, heavy and fluffy. The heavy ones land nearby to the parent plant, whereas the fluffy
    seeds float further away on the wind. In urban environments, seeds that float far will often land on infertile concrete.
    Within about 5-12 generations, the weed has been found to evolve to produce significantly more heavy seeds than its
    rural relatives do.[71] [72] Other examples of urban wildlife are rock pigeons and species of crows adapting to city
    environments around the world; African penguins in Simons Town; baboons in South Africa; and a variety of insects
Evidence of common descent                                                                                                         202
Specific examples
    Blackcap
    The bird species, Sylvia atricapillab, commonly referred to as Blackcaps, lives in Germany and flies southwest to
    Spain while a smaller group flies northwest to Great Britain during the winter. The smaller blackcap population only
    recently rerouted to Spain. Gregor Rolshausen from the University of Freiburg found that the genetic separation of
    the two populations is already in progress. The differences found have arisen in about 30 generations. With DNA
    sequencing, the individuals can be assigned to a correct group with an 85% accuracy. Stuart Bearhop from the
    University of Exeter reported that birds wintering in England tend to mate only among themselves, and not usually
    with those wintering in the Mediterranean. (Bearhop et al. 2005) It is still inference to say that the populations will
    become two different species, but experts deduce that it is expected due to the continued genetic and geographic
    separation.[74]
Drosophila melanogaster
    Hawthorn fly
    One example of evolution at work is the case of the hawthorn fly, Rhagoletis pomonella, also known as the apple
    maggot fly, which appears to be undergoing sympatric speciation.[78] Different populations of hawthorn fly feed on
    different fruits. A distinct population emerged in North America in the 19th century some time after apples, a
    non-native species, were introduced. This apple-feeding population normally feeds only on apples and not on the
    historically preferred fruit of hawthorns. The current hawthorn feeding population does not normally feed on apples.
    Some evidence, such as the fact that six out of thirteen allozyme loci are different, that hawthorn flies mature later in
    the season and take longer to mature than apple flies; and that there is little evidence of interbreeding (researchers
    have documented a 4-6% hybridization rate) suggests that this is occurring.[79]
    Mollies
    The Shortfin Molly—Poecilia Mexicana—is a small fish that lives in the Sulfur Caves of Mexico. Michael Tobler
    from the Texas A&M University has studied the fish for years and found that two distinct populations of
    mollies—the dark interior fish and the bright surface water fish—are becoming more genetically divergent. (Tobler
    et al. 2009) The populations have no obvious barrier separating the two; however, it was found that the mollies are
    hunted by a large water bug (Belostoma spp). Tobler collected the bug and both types of mollies, placed them in
    large plastic bottles, and put them back in the cave. After a day, it was found that, in the light, the cave-adapted fish
    endured the most damage, with four out of every five stab-wounds from the water bugs sharp mouthparts. In the
    dark, the situation was the opposite. The mollies’ senses can detect a predator’s threat in their own habitats, but not in
    the other ones. Moving from one habitat to the other significantly increases the risk of dying. Tobler plans on further
Evidence of common descent                                                                                                            204
experiments, but it is believed that it is a good example of the rise of a new species.[86]
Thale cress
    Kirsten Bomblies et al. from the Max Planck Institute for Developmental
    Biology discovered that two genes passed down by each parent of the thale
    cress plant, Arabidopsis thaliana. When the genes are passed down, it ignites
    a reaction in the hybrid plant that turns its own immune system against it. In
    the parents, the genes were not detrimental, but they evolved separately to
    react defectively when combined. (Bomlies et al. 2007)
    Over successive generations, these incompatibilities could create divisions between different plant strains, reducing
    their chances of successful mating and turning distinct strains into separate species.[87]
    Polar bear
    A specific example of large-scale evolution is the polar bear (Ursus maritimus), which though clearly related to the
    brown bear (Ursus arctos) by virtue of the fact that though separate species they can still interbreed and produce
    fertile offspring[88] it has also obviously acquired significant physiological differences from the brown bear. These
    differences allow the polar bear to comfortably survive in conditions that the brown could not including the ability to
    swim sixty miles or more at a time in freezing waters, blend in—the change in fur color—and to stay warm in the
    arctic environment. Additionally, the elongation of the neck makes it easier to keep their heads above water while
    swimming and the oversized webbed feet that act as paddles when swimming. The polar bear has also evolved small
    papillae and vacuole-like suction cups on the soles to make them less likely to slip on the ice, feet covered with
    heavy matting to protect the bottoms from intense cold and provide traction, smaller ears to reduce the loss of heat,
    eyelids that act like sunglasses, to accommodate their all-meat diet, a large stomach capacity to enable opportunistic
    feeding, and the ability to fast for up to nine months while recycling their urea.[89] [90]
Evidence of common descent                                                                                                          205
    Raphanobrassica
    Raphanobrassica includes all intergeneric hybrids between the genera Raphanus (radish) and Brassica (cabbages,
    etc).[91] [92]
    The Raphanobrassica is an allopolyploid cross between the radish (Raphanus sativus) and cabbage (Brassica
    oleracea). Plants of this parentage are now known as radicole. Two other fertile forms of Raphanobrassica are
    known. Raparadish, an allopolyploid hybrid between Raphanus sativus and Brassica rapa is grown as a fodder crop.
    "Raphanofortii" is the allopolyploid hybrid between Brassica tournefortii and Raphanus caudatus.
    The Raphanobrassica is a fascinating plant, because—in spite of its hybrid nature—it is not sterile. This has led
    some botanists to propose that the accidental hybridization of a flower by pollen of another species in nature could
    be a mechanism of speciation common in higher plants.
Salsify
    Salsifies are one example where hybrid speciation has been observed. In the
    early 20th century, humans introduced three species of goatsbeard into North
    America. These species, the western salsify (T. dubius), the meadow salsify
    (T. pratensis), and the oyster plant (T. porrifolius), are now common weeds in
    urban wastelands. In the 1950s, botanists found two new species in the
    regions of Idaho and Washington, where the three already known species
    overlapped. One new species, Tragopogon miscellus, is a tetraploid hybrid of
    T. dubius and T. pratensis. The other species, Tragopogon mirus, is also an
    allopolyploid, but its ancestors were T. dubius and T. porrifolius. These new
    species are usually referred to as "the Ownbey hybrids" after the botanist who
    first described them. The T. mirus population grows mainly by reproduction
    of its own members, but additional episodes of hybridization continue to add
    to the T. mirus population.
    York groundsel
    The York groundsel (Senecio eboracensis) is a hybrid species of the self-incompatible Senecio squalidus (also
    known as Oxford ragwort) and the self-compatible Senecio vulgaris (also known as Common groundsel). Like S.
    vulgaris, S. eboracensis is self-compatible, however, it shows little or no natural crossing with its parent species, and
    is therefore reproductively isolated, indicating that strong breed barriers exist between this new hybrid and its
    parents.
    It is thought to have resulted from a backcrossing of the F1 hybrid of its parents to S. vulgaris. S. vulgaris is native to
    Britain, while S. squalidus was introduced from Sicily in the early 18th century; therefore, S. eboracensis has
    speciated from those two species within the last 300 years.
    Other hybrids descended from the same two parents are known. Some are infertile, such as S. x baxteri. Other fertile
    hybrids are also known, including S. vulgaris var. hibernicus, now common in Britain, and the allohexaploid S.
    cambrensis, which according to molecular evidence probably originated independently at least three times in
Evidence of common descent                                                                                                        206
    different locations. Morphological and genetic evidence support the status of S. eboracensis as separate from other
    known hybrids.[95]
    "Computer simulations of the evolution of linear sequences have demonstrated the importance of recombination of
    blocks of sequence rather than point mutagenesis alone. Repeated cycles of point mutagenesis, recombination, and
    selection should allow in vitro molecular evolution of complex sequences, such as proteins."[100] Evolutionary
    molecular engineering, also called directed evolution or in vitro molecular evolution involves the iterated cycle of
    mutation, multiplication with recombination, and selection of the fittest of individual molecules (proteins, DNA, and
    RNA). Natural evolution can be relived showing us possible paths from catalytic cycles based on proteins to based
    on RNA to based on DNA.[100] [101] [102] [103]
    See also
    • Nothing in Biology Makes Sense Except in the Light of Evolution
    Sources
    • Bearhop, Stuart; Fiedler, Wolfgang; Furness, Robert W.; Votier, Stephen C.; Waldron, Susan; Newton, Jason;
      Bowen, Gabriel J.; Berthold, Peter & Farnsworth, Keith (2005): Assortative mating as a mechanism for rapid
      evolution of a migratory divide. Science 310(5747): 502-504. doi:10.1126/science.1115661 (HTML abstract)
      Supporting Online Material [104]
    • Bomblies, Lempe, Epple, Warthmann, Lanz, Dangl & Weigel. 2007. Autoimmune response as a mechanism for a
      Dobhansky-Muller-Type incompatibility syndrome in plants. PLoS Biol 5: e236
      doi:10.1371/journal.pbio.0050236
    • Davis, Paul and Kenrick, Paul. 2004. Fossil Plants. Smithsonian Books (in association with the Natural History
      Museum of London), Washington, D.C. ISBN 1-58834-156-9
    • Tobler, Micheal (2009). Does a predatory insect contribute to the divergence between cave- and surface-adapted
      fish populations? Biology Letters doi:10.1098/rsbl.2009.0272
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Evidence of common descent                                                                                                                                 208
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Evidence of common descent                                                                                              211
    Further reading
    •   Biological science, Oxford, 2002.
    •   Clegg CJ (1998). Genetics & evolution. London: J. Murray. ISBN 0-7195-7552-4.
    •   Coyne, Jerry A. (2009). Why Evolution is True. New York: Oxford University Press. ISBN 978-0-19-923084-6.
    •   Darwin, Charles November 24, 1859. On the Origin of Species by means of Natural Selection or the Preservation
        of Favoured Races in the Struggle for Life. London: John Murray, Albemarle Street. 502 pages. Reprinted:
        Gramercy (May 22, 1995). ISBN 0-517-12320-7
    •   Dawkins, Richard (2009). The Greatest Show on Earth: The Evidence for Evolution. Bantam Press.
        ISBN 978-1-4165-9478-9.
    •   Endler, John A. (1986). Natural selection in the wild. New Jersey: Princton University Press.
        ISBN 0-691-08387-8.
    •   Futuyma, D.J. 1998. Evolutionary Biology. 3rd ed. Sinauer Associates, Sunderland, Massachusetts. (dated 1998,
        published 1997) ISBN 0-87893-189-9
    •   Gigerenzer, Gerd (1989). The Empire of chance: how probability changed science and everyday life. Cambridge,
        UK: Cambridge University Press. ISBN 0-521-33115-3.
    •   Hill A, Behrensmeyer AK (1980). Fossils in the making: vertebrate taphonomy and paleoecology. Chicago:
        University of Chicago Press. ISBN 0-226-04169-7.
    • Ho, YK (2004). Advanced-level Biology for Hong Kong, Manhattan Press. ISBN 962-990-635-X
    • Martin RE (1999). Taphonomy: a process approach. Cambridge, UK: Cambridge University Press.
      ISBN 0-521-59833-8.
    • Mayr, Ernst (2001). What evolution is. New York: Basic Books. ISBN 0-465-04426-3.
    • Paul CRC, Donovan SK (1998). The adequacy of the fossil record. New York: John Wiley. ISBN 0-471-96988-5.
    • Sober, Elliott (2008). Evidence and Evolution: The logic behind the science. Cambridge University Press.
      ISBN 978-0-521-87188-4.
    External links
    • National Academies Evolution Resources (http://nationalacademies.org/evolution/)
    • TalkOrigins Archive - 29+ Evidences for Macroevolution: The Scientific Case for Common Descent (http://
      www.talkorigins.org/faqs/comdesc/)
    • TalkOrigins Archive - Transitional Vertebrate Fossils FAQ (http://www.talkorigins.org/faqs/faq-transitional.
      html)
    • Understanding Evolution: Your one-stop source for information on evolution (http://evolution.berkeley.edu/
      evosite/evo101/index.shtml)
    • National Academy Press: Teaching About Evolution and the Nature of Science (http://www.nap.edu/books/
      0309063647/html/)
    • Evolution (http://www.pbs.org/wgbh/evolution/index.html) — Provided by PBS.
    • Evolution News from Genome News Network (GNN) (http://www.genomenewsnetwork.org/categories/index/
      genome/evolution.php)
    • Evolution by Natural Selection (http://www.chainsofreason.org/wiki/Chain_3) — An introduction to the logic
      of the theory of evolution by natural selection
    • Howstuffworks.com — How Evolution Works (http://science.howstuffworks.com/evolution.htm/printable)
    • 15 Evolutionary Gems (http://www.nature.com/nature/newspdf/evolutiongems.pdf)
                                                                                                                             212
Mechanisms
Adaptation
Adaptation is the evolutionary process whereby a population becomes better suited to its habitat.[1] [2] This process
takes place over many generations,[3] and is one of the basic phenomena of biology.[4]
The term adaptation may also refer to a feature which is especially important for an organism's survival.[5] For
example, the adaptation of horses' teeth to the grinding of grass, or their ability to run fast and escape predators. Such
adaptations are produced in a variable population by the better suited forms reproducing more successfully, that is,
by natural selection.
General principles
      The significance of an adaptation can only be understood in relation to the total biology of the species.
      Julian Huxley[6]
Adaptation is, first of all, a process, rather than a physical part of a body.[7] The distinction may be seen in an
internal parasite (such as a fluke), where the bodily structure is greatly simplified, but nevertheless the organism is
highly adapted to its unusual environment. From this we see that adaptation is not just a matter of visible traits: in
such parasites critical adaptations take place in the life-cycle, which is often quite complex.[8] However, as a
practical term, adaptation is often used for the product: those features of a species which result from the process.
Many aspects of an animal or plant can be correctly called adaptations, though there are always some features whose
function is in doubt. By using the term adaptation for the evolutionary process, and adaptive trait for the bodily part
or function (the product), the two senses of the word may be distinguished.
Adaptation is one of the two main processes that explain the diverse species we see in biology, such as the different
species of Darwin's finches. The other is speciation (species-splitting or cladogenesis), caused by geographical
isolation or some other mechanism.[9] [10] A favourite example used today to study the interplay of adaptation and
speciation is the evolution of cichlid fish in African lakes, where the question of reproductive isolation is much more
complex.[11] [12]
Adaptation is not always a simple matter, where the ideal phenotype evolves for a given external environment. An
organism must be viable at all stages of its development and at all stages of its evolution. This places constraints on
the evolution of development, behaviour and structure of organisms. The main constraint, over which there has been
much debate, is the requirement that each genetic and phenotypic change during evolution should be relatively small,
because developmental systems are so complex and interlinked. However, it is not clear what "relatively small"
should mean, for example polyploidy in plants is a reasonably common large genetic change.[13] The origin of the
symbiosis of multiple micro-organisms to form a eukaryota is a more exotic example.[14]
All adaptations help organisms survive in their ecological niches.[15] These adaptive traits may be structural,
behavioral or physiological. Structural adaptations are physical features of an organism (shape, body covering,
armament; and also the internal organization). Behavioural adaptations are composed of inherited behaviour chains
and/or the ability to learn: behaviours may be inherited in detail (instincts), or a tendency for learning may be
inherited (see neuropsychology). Examples: searching for food, mating, vocalizations. Physiological adaptations
permit the organism to perform special functions (for instance, making venom, secreting slime, phototropism); but
also more general functions such as growth and development, temperature regulation, ionic balance and other aspects
of homeostasis. Adaptation, then, affects all aspects of the life of an organism.
Adaptation                                                                                                                      213
    Definitions
    The following definitions are mainly due to Theodosius Dobzhansky.
             1. Adaptation is the evolutionary process whereby an organism becomes better able to live in its habitat or
             habitats.[16]
             2. Adaptedness is the state of being adapted: the degree to which an organism is able to live and reproduce in a
             given set of habitats.[17]
             3. An adaptive trait is an aspect of the developmental pattern of the organism which enables or enhances the
             probability of that organism surviving and reproducing.[18]
    Brief history
    Adaptation as a fact of life has been accepted by all the great thinkers who have tackled the world of living
    organisms. It is their explanations of how adaptation arises that separates these thinkers. A few of the most
    significant ideas:[22]
    • Empedocles did not believe that adaptation required a final cause (~ purpose), but "came about naturally, since
      such things survived". Aristotle, however, did believe in final causes.
    • In natural theology, adaptation was interpreted as the work of a deity, even as evidence for the existence of
      God.[23] William Paley believed that organisms were perfectly adapted to the lives they lead, an argument that
      shadowed Leibniz, who had argued that God had brought about the best of all possible worlds. Voltaire's Dr
      Pangloss[24] is a parody of this optimistic idea, and Hume also argued against design.[25] The Bridgewater
      Treatises are a product of natural theology, though some of the authors managed to present their work in a fairly
      neutral manner. The series was lampooned by Robert Knox, who held quasi-evolutionary views, as the Bilgewater
      Treatises. Darwin broke with the tradition by emphasising the flaws and limitations which occurred in the animal
      and plant worlds.[26]
Adaptation                                                                                                                      214
    Many other students of natural history, such as Buffon, accepted adaptation, and
    some also accepted evolution, without voicing their opinions as to the mechanism.
    This illustrates the real merit of Darwin and Wallace, and secondary figures such as             Lamarck
    Bates, for putting forward a mechanism whose significance had only been glimpsed
    previously. A century later, experimental field studies and breeding experiments by such as Ford and Dobzhansky
    produced evidence that natural selection was not only the 'engine' behind adaptation, but was a much stronger force
    than had previously been thought.[28] [29] [30]
    Types of adaptation
             Adaptation is the heart and soul of evolution. Niles Eldredge[31]
    Changes in habitat
    Before Darwin, adaptation was seen as a fixed relationship between an organism and its habitat. It was not
    appreciated that as the climate changed, so did the habitat; and as the habitat changed, so did the biota. Also, habitats
    are subject to changes in their biota: for example, invasions of species from other areas. The relative numbers of
    species in a given habitat are always changing. Change is the rule, though much depends on the speed and degree of
    the change.
    When the habitat changes, three main things may happen to a resident population: habitat tracking, genetic change or
    extinction. In fact, all three things may occur in sequence. Of these three effects, only genetic change brings about
    adaptation.
    Habitat tracking
    When a habitat changes, the most common thing to happen is that the resident population moves to another locale
    which suits it; this is the typical response of flying insects or oceanic organisms, who have wide (though not
    unlimited) opportunity for movement.[32] This common response is called habitat tracking. It is one explanation put
    forward for the periods of apparent stasis in the fossil record (the punctuated equilibrium thesis).[33]
    Genetic change
    Genetic change is what occurs in a population when natural selection acts on the genetic variability of the
    population. By this means, the population adapts genetically to its circumstances.[34] Genetic changes may result in
    visible structures, or may adjust physiological activity in a way that suits the changed habitat.
    It is now clear that habitats and biota do frequently change. Therefore, it follows that the process of adaptation is
    never finally complete.[35] Over time, it may happen that the environment changes little, and the species comes to fit
    its surroundings better and better. On the other hand, it may happen that changes in the environment occur relatively
    rapidly, and then the species becomes less and less well adapted. Seen like this, adaptation is a genetic tracking
    process, which goes on all the time to some extent, but especially when the population cannot or does not move to
    another, less hostile area. Also, to a greater or lesser extent, the process affects every species in a particular
    ecosystem.[36] [37]
Adaptation                                                                                                                     215
    Van Valen thought that even in a stable environment, competing species had to constantly adapt to maintain their
    relative standing. This became known as the Red Queen hypothesis.
    •   Co-extinction
    •   Infection-resistance
    •   Mimicry
    •   Mutualism
    •   Parasite-host
    •   Pollination syndrome
    •   Predator-prey
    •   Symbiosis
    The gut contents, wing structures, and mouthpart morphologies of fossilized beetles and flies suggest that they acted
    as early pollinators. The association between beetles and angiosperms during the early Cretaceous period led to
    parallel radiations of angiosperms and insects into the late Cretaceous. The evolution of nectaries in late Cretaceous
    flowers signals the beginning of the mutualism between hymenopterans and angiosperms.[38]
Adaptation                                                                                                                           216
Mimicry
    The conflict between the size of the human foetal brain at birth, (which cannot be larger than about 400ccs, else it
    will not get through the mother's pelvis) and the size needed for an adult brain (about 1400ccs), means the brain of a
    newborn child is quite immature. The most vital things in human life (locomotion, speech) just have to wait while
    the brain grows and matures. That is the result of the birth compromise. Much of the problem comes from our
    upright bipedal stance, without which our pelvis could be shaped more suitably for birth. Neanderthals had a similar
    problem.[53] [54] [55]
    Shifts in function
             Adaptation and function are two aspects of one problem. Julian Huxley[56]
    Pre-adaptations
    This occurs when a species or population has characteristics which (by chance) are suited for conditions which have
    not yet arisen. For example, the polyploid rice-grass Spartina townsendii is better adapted than either of its parent
    species to their own habitat of saline marsh and mud-flats.[57] White Leghorn fowl are markedly more resistant to
    vitamin B deficiency than other breeds.[58] On a plentiful diet there is no difference, but on a restricted diet this
    preadaptation could be decisive.
    Pre-adaptation may occur because a natural population carries a huge quantity of genetic variability.[59] In diploid
    eukaryotes, this is a consequence of the system of sexual reproduction, where mutant alleles get partially shielded,
    for example, by the selective advantage of heterozygotes. Micro-organisms, with their huge populations, also carry a
    great deal of genetic variability.
    The first experimental evidence of the pre-adaptive nature of genetic variants in micro-organisms was provided by
    Salvador Luria and Max Delbrück who developed fluctuation analysis, a method to show the random fluctuation of
    pre-existing genetic changes that conferred resistance to phage in the bacterium Escherichia coli.
Related issues
    Non-adaptive traits
    Some traits do not appear to be adaptive, that is, they appear to have a neutral or even deleterious effect on fitness in
    the current environment. Because genes have pleiotropic effects, not all traits may be functional (i.e. spandrels).
    Alternatively, a trait may have been adaptive at some point in an organism's evolutionary history, but a change in
    habitats caused what used to be an adaptation to become unnecessary or even a hindrance (maladaptations). Such
    adaptations are termed vestigial.
    Vestigial organs
    Many organisms have vestigial organs, which are the remnants of fully functional structures in their ancestors. As a
    result of changes in lifestyle the organs became redundant, and are either not functional or reduced in functionality.
    With the loss of function goes the loss of positive selection, and the subsequent accumulation of deleterious
    mutations. Since any structure represents some kind of cost to the general economy of the body, an advantage may
    accrue from their elimination once they are not functional. Examples: wisdom teeth in humans; the loss of pigment
    and functional eyes in cave fauna; the loss of structure in endoparasites.[64]
    Fitness landscapes
    Sewall Wright proposed that populations occupy adaptive peaks on a fitness landscape. In order to evolve to another,
    higher peak, a population would first have to pass through a valley of maladaptive intermediate stages.[65] A given
    population might be "trapped" on a peak that is not optimally adapted.
    Extinction
    If a population cannot move or change sufficiently to preserve its long-term viability, then obviously, it will become
    extinct, at least in that locale. The species may or may not survive in other locales. Species extinction occurs when
    the death rate over the entire species (population, gene pool ...) exceeds the birth rate for a long enough period for the
    species to disappear. It was an observation of Van Valen that groups of species tend to have a characteristic and
    fairly regular rate of extinction.[66]
    Co-extinction
    Just as we have co-adaptation, there is also co-extinction. Co-extinction refers to the loss of a species due to the
    extinction of another; for example, the extinction of parasitic insects following the loss of their hosts. Co-extinction
    can also occur when a flowering plant loses its pollinator, or through the disruption of a food chain.[67] "Species
    co-extinction is a manifestation of the interconnectedness of organisms in complex ecosystems ... While
    co-extinction may not be the most important cause of species extinctions, it is certainly an insidious one".[68]
    Flexibility
    Populations differ in their phenotypic plasticity, which is the ability of an organism with a given genotype to change
    its phenotype in response to changes in its habitat, or to its move to a different habitat.[69] [70]
    To a greater or lesser extent, all living things can adjust to circumstances. The degree of flexibility is inherited, and
    varies to some extent between individuals. A highly specialized animal or plant lives only in a well-defined habitat,
    eats a specific type of food, and cannot survive if its needs are not met. Many herbivores are like this; extreme
    examples are koalas which depend on eucalyptus, and pandas which require bamboo. A generalist, on the other hand,
    eats a range of food, and can survive in many different conditions. Examples are humans, rats, crabs and many
    carnivores. The tendency to behave in a specialized or exploratory manner is inherited – it is an adaptation.
    Rather different is developmental flexibility: "An animal or plant is developmentally flexible if when it is raised or
    transferred to new conditions it develops so that it is better fitted to survive in the new circumstances".[71] Once
    again, there are huge differences between species, and the capacities to be flexible are inherited.
    Acclimatization
    If humans move to a higher altitude, respiration and physical exertion become a problem, but after spending time in
    high altitude conditions they acclimatize to the pressure by increasing production of red blood corpuscles. The ability
    to acclimatize is an adaptation, but not the acclimatization itself. Fecundity goes down, but deaths from some
    tropical diseases also goes down.
    Over a longer period of time, some people will reproduce better at these high altitudes than others. They will
    contribute more heavily to later generations. Gradually the whole population becomes adapted to the new conditions.
    This we know takes place, because the performance of long-term communities at higher altitude is significantly
    better than the performance of new arrivals, even when the new arrivals have had time to make physiological
    adjustments.[72]
    Some kinds of acclimatization happen so rapidly that they are better called reflexes. The rapid colour changes in
    some flatfish, cephalopods, chameleons are examples.[73]
    Learning
    Social learning is supreme for humans, and is possible for quite a few mammals and birds: of course, that does not
    involve genetic transmission except to the extent that the capacities are inherited. Similarly, the capacity to learn is
    an inherited adaptation, but not what is learnt; the capacity for human speech is inherited, but not the details of
    language.
    Function
    To say something has a function is to say something about what it does for the organism, obviously. It also says
    something about its history: how it has come about. A heart pumps blood: that is its function. It also emits sound,
    which is just an ancillary side-effect. That is not its function. The heart has a history (which may be well or poorly
    understood), and that history is about how natural selection formed and maintained the heart as a pump. Every aspect
    of an organism that has a function has a history. Now, an adaptation must have a functional history: therefore we
    expect it must have undergone selection caused by relative survival in its habitat. It would be quite wrong to use the
    word adaptation about a trait which arose as a by-product.[74] [75]
    It is widely regarded as unprofessional for a biologist to say something like "A wing is for flying", although that is
    their normal function. A biologist would be conscious that sometime in the remote past feathers on a small dinosaur
Adaptation                                                                                                                                              220
    had the function of retaining heat, and that later many wings were not used for flying (e.g. penguins, ostriches). So,
    the biologist would rather say that the wings on a bird or an insect usually had the function of aiding flight. That
    would carry the connotation of being an adaptation with a history of evolution by natural selection.
    Teleonomy
    Teleonomy is a term invented to describe the study of goal-directed functions which are not guided by the conscious
    forethought of man or any supernatural entity. It is contrasted with Aristotle's teleology, which has connotations of
    intention, purpose and foresight. Evolution is teleonomic; adaptation hoards hindsight rather than foresight. The
    following is a definition for its use in biology:
             Teleonomy: The hypothesis that adaptations arise without the existence of a prior purpose, but by the action of
             natural selection on genetic variability.[76]
    The term may have been suggested by Colin Pittendrigh in 1958;[77] it grew out of cybernetics and self-organising
    systems. Ernst Mayr, George C. Williams and Jacques Monod picked up the term and used it in evolutionary
    biology.[78] [79] [80] [81]
    Philosophers of science have also commented on the term. Ernest Nagel analysed the concept of goal-directedness in
    biology;[82] and David Hull commented on the use of teleology and teleonomy by biologists:
             Haldane can be found remarking, "Teleology is like a mistress to a biologist: he cannot live without her but
             he’s unwilling to be seen with her in public". Today the mistress has become a lawfully wedded wife.
             Biologists no longer feel obligated to apologize for their use of teleological language; they flaunt it. The only
             concession which they make to its disreputable past is to rename it ‘teleonomy’.[83]
    See also
    •   Adaptive radiation
    •   Co-adaptation
    •   Co-evolution
    •   Ecological trap
    •   Evolvability
    •   Exaptation
    •   Intragenomic conflict
    •   Maladaptation
    •   Mimicry
    •   Polymorphism (biology)
    References
    [1] The Oxford Dictionary of Science defines adaptation as "Any change in the structure or functioning of an organism that makes it better suited
        to its environment".
    [2] Bowler P.J. 2003. Evolution: the history of an idea. California. p10
    [3] Patterson C. 1999. Evolution. Natural History Museum, London. p1
    [4] Williams, George C. 1966. Adaptation and natural selection: a critique of some current evolutionary thought. Princeton. "Evolutionary
        adaptation is a phenomenon of pervasive importance in biology." p5
    [5] Both uses of the term 'adaptation' are recognized by King R.C. Stansfield W.D. and Mulligan P. 2006. A dictionary of genetics. Oxford, 7th
        ed.
    [6] Huxley, Julian 1942. Evolution the modern synthesis. Allen & Unwin, London. p449
    [7] Mayr, Ernst 1982. The growth of biological thought. Harvard. p483: "Adaptation... could no longer be considered a static condition, a product
        of a creative past, and became instead a continuing dynamic process."
    [8] Price P.W. 1980. The evolutionary biology of parasites. Princeton.
    [9] Mayr E. 1963. Animal species and evolution. Harvard.
    [10] Mayr, Ernst 1982. The growth of biological thought: diversity, evolution and inheritance. Harvard. p562–566
Adaptation                                                                                                                                               221
    [11] Salzburger W., Mack T., Verheyen E., Meyer A. (2005). "Out of Tanganyika: Genesis, explosive speciation, key-innovations and
        phylogeography of the haplochromine cichlid fishes" (http:/ / www. biomedcentral. com/ content/ pdf/ 1471-2148-5-17. pdf) (PDF). BMC
        Evolutionary Biology 5 (1): 17. doi:10.1186/1471-2148-5-17. PMID 15723698. PMC 554777. .
    [12] Kornfield, Irv; Smith, Peter (November 2000). "African Cichlid Fishes: Model Systems for Evolutionary Biology" (http:/ / arjournals.
        annualreviews. org/ doi/ abs/ 10. 1146/ annurev. ecolsys. 31. 1. 163). Annual Review of Ecology and Systematics 31: 163.
        doi:10.1146/annurev.ecolsys.31.1.163. .
    [13] Stebbins, G. Ledyard, Jr. 1950. Variation and evolution in plants. Columbia. Polyploidy, chapters 8 and 9.
    [14] Margulis, Lynn (ed) 1991. Symbiosis as a source of evolutionary innovation: speciation and morphogenesis MIT. ISBN 0-262-13269-9
    [15] Hutchinson G. Evelyn 1965. The ecological theatre and the evolutionary play. Yale. The niche is the central concept in evolutionary
        ecology; see especially part II The niche: an abstractly inhabited hypervolume. p26–78
    [16] Dobzhansky T. 1968. On some fundamental concepts of evolutionary biology. Evolutionary biology 2, 1–34.
    [17] Dobzhansky T. 1970. Genetics of the evolutionary process. Columbia, N.Y. p4–6, 79–82, 84–87
    [18] Dobzhansky T. 1956. Genetics of natural populations XXV. Genetic changes in populations of Drosophila pseudoobscura and Drosphila
        persimilis in some locations in California. Evolution 10, 82–92.
    [19] Endler, John A. 1986. Natural selection in the wild. Princeton. p33–51: 'Fitness and adaptation'.
    [20] Sober, Elliott 1984. The nature of selection: a philosophical enquiry. M.I.T.
    [21] following discussion in Endler, John A. 1986. Natural selection in the wild. Princeton. p33–51: 'Fitness and adaptation'.
    [22] references and details in their articles
    [23] Desmond, Adrian 1989. The politics of evolution. Chicago. p31/32, footnote 18.
    [24] In Candide, ou l'optimisme.
    [25] Sober, Elliott 1993. Philosophy of biology. Oxford. Chapter 2
    [26] Darwin, Charles. 1872. The origin of species. 6th edition, p397: Rudimentary, atrophied and aborted organs.
    [27] see, for example, the discussion in Bowler, Peter H. 2003. Evolution: the history of an idea. 3rd ed, California. p86–95, especially
        "Whatever the true nature of Lamark's theory, it was his mechanism of adaptation that caught the attention of later naturalists". (p90)
    [28] Provine, William 1986. Sewall Wright and evolutionary biology. University of Chicago Press.
    [29] Ford E.B. 1975. Ecological genetics, 4th ed. Chapman and Hall, London.
    [30] Orr H. 2005. The genetic theory of adaptation: a brief history. Nature Rev. Genetics 6, 2, p119–127.
    [31] Eldredge, Niles 1995. Reinventing Darwin: the great evolutionary debate. Wiley N.Y. p33
    [32] Eldredge, Niles 1986. Time frames: the rethinking of Darwinian evolution and the theory of punctuated equilibria. p136, Of glaciers and
        beetles.
    [33] Eldredge, Niles 1995. Reinventing Darwin: the great evolutionary debate. Wiley, N.Y. p64
    [34] Orr H. 2005. The genetic theory of adaptation: a brief history. Nature Rev. Genetics, 6, 119–127.
    [35] Mayr, Ernst 1982. The growth of biological thought: diversity, evolution and inheritance. Harvard. Harvard. p481 (and sequence) tells how
        Darwin's ideas on adaptation developed as he came to appreciate it as "a continuing dynamic process" (bottom p483).
    [36] Sterelny K. & Griffiths P.E. 1999. Sex and death: an introduction to philosophy of biology. University of Chicago Press. p217 ISBN
        O-226-77304-3
    [37] Freeman S. & Herron J.C. 2007. Evolutionary analysis. Pearson Education. p364 ISBN 0-13-227584-8
    [38] Stebbins, G. Ledyard, Jr. 1974. Flowering plants: evolution above the species level. Harvard.
    [39] Carpenter GDH and Ford EB 1933. Mimicry. Methuen, London.
    [40] Wickler W. 1968. Mimicry in plants and animals. World University Library, London.
    [41] Moon H.P. 1976. Henry Walter Bates FRS 1825-1892: explorer, scientist and darwinian. Leicestershire Museums, Leicester.
    [42] Ruxton GD, Sherratt TN and Speed MP 2004. Avoiding attack: the evolutionary ecology of crypsis, warning signals and mimicry. Oxford.
    [43] Mallet, James 2001. The speciation revolution. J Evolutionary Biology 14, 887-8.
    [44] http:/ / www. ucl. ac. uk/ ~ucbhdjm/ courses/ b242/ Mimic/ Mimic. html
    [45] Stebbins, G. Ledyard, Jr. 1974. Flowering plants: evolution above the species level. Harvard. Contains an extensive analysis of the evolution
        of adaptations in the radiation of Angiosperms.
    [46] Medawar, Peter 1960. The future of Man. Methuen, London.
    [47] Jacob, Francois 1977. Evolution and tinkering. Science 196 1161–1166.
    [48] Mayr, Ernst 1982. The growth of biological thought: diversity, evolution and inheritance. Harvard. p589
    [49] It is, of course, not possible to test selective pressures on extinct populations in any direct way. Gould, Stephen J. (1974): Origin and
        function of 'bizarre' structures - antler size and skull size in 'Irish Elk', Megaloceros giganteus. Evolution 28(2): 191-220.
        doi:10.2307/2407322 (First page text)
    [50] Darwin, Charles 1871. The Descent of Man and selection in relation to sex. Murray, London.
    [51] The case was treated by Fisher R.A. 1930. Genetical theory of natural selection. Oxford. p134–139.
    [52] Cronin, Helen 1991. The ant and the peacock: altruism and sexual selection from Darwin to the present day. Cambridge.
    [53] Rosenberg K.R. 2005. The evolution of modern human childbirth. Am J. Physical Anthropology 35, p89–124.
    [54] Friedlander, Nancy & Jordan, David K. 1995. Obstetric implications of Neanderthal robusticity and bone density. Human Evolution
        (Florence) 9: 331-342.
Adaptation                                                                                                                                                 222
    [55] Miller, Geoffrey 2007. Brain evolution. In Gangestad S.W. and Simpson J.A. (eds) The evolution of mind: fundamental questions and
        controversies. Guildford.
    [56] Huxley, Julian 1942. Evolution the modern synthesis. Allen & Unwin, London. p417
    [57] Huskins C.L. 1931. The origin of Spartina townsendii. Genetica 12, 531.
    [58] Lamoreux W.F and Hutt F.B. 1939. Breed differences in resistance to a deficiency in vitamin B1 in the fowl. J. Agric. Res. Washington 58,
        307–315.
    [59] [Dobzhansky T.] 1981. Dobzhansky's genetics of natural populations. eds Lewontin RC, Moore JA, Provine WB and Wallace B. Columbia
        University Press N.Y.
    [60] Egdar F. Allin and James A. Hopson 1992. Evolution of the auditory system in Synapsida ("Mammal-like reptiles" and primitive mammals)
        as seen in the fossil record. Section IV (Mammals), Chapter 28, pages 587-614 in The evolutionary biology of hearing edited by Douglas B.
        Webster, Richard R. Fay, and Arthur N. Popper. Springer-Verlag. ISBN 0-387-97588-8.
    [61] Neil Shubin 2008. Your Inner Fish: a journey into the 3.5-billion-year history of the human body Pantheon Books 2008. ISBN
        978-0-375-42447-2. Chapter 10, "Ears"
    [62] Panchen, Alec. 1992. Classification, evolution and the nature of biology. Cambridge. Chapter 4 Homology and the evidence for evolution.
    [63] Gould, Stephen Jay and Elizabeth S. Vrba 1982. Exaptation – a missing term in the science of form. Paleobiology 8, 1, 4–15.
    [64] Charles Darwin was the first to put forward such ideas: Barrett P.H. (ed) 1987. Charles Darwin's notebooks (1836–1844). Cambridge.
    [65] Wright, Sewall 1932. The roles of mutation, inbreeding, crossbreeding, and selection in evolution. In Proceedings of the Sixth International
        Congress on Genetics, p355–366.
    [66] Van Valen L. 1973. A new evolutionary law. Evolutionary Theory 1, 1–30.
    [67] Darwin in the Origin of Species tells the story of "a web of complex relations" involving heartsease (Viola tricolor), red clover (Trifolium
        pratense, humble-bees (bumblebees), mice and cats. Origin, 6th edition, p57.
    [68] Koh, Lian Pih. 2004. Science, 305, 5690, 1632-1634, 10 September 2004.
    [69] Price TD, Qvarnström A & Irwin DE 2003. The role of phenotypic plasticity in driving genetic evolution. Proc. Biol. Sci. 270 p1433–1440.
    [70] Price T.D. 2006. Phenotypic plasticity, sexual selection and the evolution of colour patterns. J Exp Biol. 209 p2368–2376
    [71] Maynard Smith J. 1993. The theory of evolution. Cambridge. 3rd ed, p33.
    [72] Moore Lorna G. and Regensteiner Judith G. 1983. Adaptation to high altitude. Ann. Rev. Anthropology 12, p285–304.
    [73] Maynard Smith uses the term physiologically versatile for such animals. Maynard Smith J. 1993. The theory of evolution. Cambridge. 3rd
        ed, p32.
    [74] Sober, Elliott 1993. Philosophy of biology. Oxford. p85–86
    [75] Williams, George C. 1966. Adaptation and natural selection: a critique of some current evolutionary thought. Princeton. p8–10
    [76] "The hypothesis that adaptations arise without the existence of a prior purpose, but by chance may change the fitness of an organism."
        Oxford Dictionary of Zoology. But one might question the word chance, since natural selection, by its operation in particular habitats, is not a
        random process (it may be a stochastic or probabilistic process, however).
    [77] Pittendrigh C.S. 1958. Adaptation, natural selection and behavior. In A. Roe and George Gaylord Simpson (eds) Behavior and evolution.
        Yale.
    [78] Mayr, Ernst 1965. Cause and effect in biology. In D. Lerner (ed) Cause and effect. Free Press, New York. p33–50.
    [79] Mayr, Ernst 1988. Toward a new philosophy of biology. Chapter 3 "The multiple meanings of teleological".
    [80] Williams, George C. 1966. Adaptation and natural selection; a critique of some current evolutionary thought. Chapter 9. Princeton.
    [81] Monod, Jacques 1971. Chance and necessity: an essay on the natural philosophy of modern biology. Knopf, New York. ISBN
        0-394-46615-2
    [82] Nagel, E. 1977. Teleology revisited: goal-directed processes in biology. Journal of Philosophy 74: 261–301.
    [83] Hull D. L. 1981. Philosophy and biology. In G. Fløistad (ed) Philosophy of Science Nijhoff.
Genetic drift                                                                                                                    223
     Genetic drift
     Genetic drift or allelic drift is the change in the frequency of a gene variant (allele) in a population due to random
     sampling. The alleles in the offspring are a sample of those in the parents, and chance has a role in determining
     whether a given individual survives and reproduces. A population's allele frequency is the fraction of the copies of
     one gene that share a particular form.[1]
     Genetic drift is an important evolutionary process, which leads to changes in allele frequencies over time. It may
     cause gene variants to disappear completely, and thereby reduce genetic variation. In contrast to natural selection,
     which makes gene variants more common or less common depending on their reproductive success,[2] the changes
     due to genetic drift are not driven by environmental or adaptive pressures, and may be beneficial, neutral, or
     detrimental to reproductive success.
     The effect of genetic drift is larger in small populations, and smaller in large populations. Vigorous debates wage
     among scientists over the relative importance of genetic drift compared with natural selection. Ronald Fisher held the
     view that genetic drift plays at the most a minor role in evolution, and this remained the dominant view for several
     decades. In 1968 Motoo Kimura rekindled the debate with his neutral theory of molecular evolution which claims
     that most of the changes in the genetic material (although not necessarily changes in phenotypes) are caused by
     genetic drift.[3]
In this simulation, there is fixation in the blue "allele" within five generations.
A B Combinations Probability
4 0 1 1/16
3 1 4 4/16
2 2 6 6/16
1 3 4 4/16
0 4 1 1/16
     where 1/2 (the probability of the A or B allele for each surviving bacterium) is multiplied four times (the total
     sample size, which in this example is the total number of surviving bacteria).
Genetic drift                                                                                                                 225
     As seen in the table, the total number of possible combinations to have an equal (conserved) number of A and B
     alleles is six, and its probability is 6/16. The total number of possible alternative combinations is ten, and the
     probability of unequal number of A and B alleles is 10/16.
     The total number of possible combinations can be represented as binomial coefficients and they can be derived from
     Pascal's triangle. The probability for any one of the possible combinations can be calculated with the formula
     where N is the number of bacteria and k is the number of A (or B) alleles in the combination. The function '()'
     signifies the binomial coefficient and can be expressed as "N choose k". Using the formula to calculate the
     probability that between them the surviving four bacteria have two A alleles and two B alleles.[6]
     Genetic drift occurs when a population's allele frequencies change due to random events. In this example the
     population contracted to just four random survivors, a phenomenon known as population bottleneck. The original
     colony began with an equal distribution of A and B alleles but chances are that the remaining population of four
     members has an unequal distribution. There is a higher probability that this surviving population will undergo drift
     (10/16) than the probability it will remain the same (6/16).
     Wright-Fisher model
     The example given uses bacteria to illustrate the effect of sampling and probability in genetic drift. Each bacterium
     has a single allele, A or B. In diploid populations consisting of N individuals there are 2N copies of each gene. An
     individual can have two copies of the same allele or two different alleles. We can call the frequency of one allele p
     and the frequency of the other q. The Wright-Fisher model assumes that generations do not overlap. For example,
     annual plants have exactly one generation per year. Each copy of the gene found in the new generation is drawn
     independently at random from all copies of the gene in the old generation. The formula to calculate the probability of
     obtaining k copies of an allele that had frequency p in the last generation is then[7]
     where the symbol "!" signifies the factorial function. This expression can also be formulated using the binomial
     coefficient,
     Moran model
     The Moran model assumes overlapping generations. At each time step, one individual is chosen to reproduce and
     one individual is chosen to die. So in each timestep, the number of copies of a given allele can go up by one, go
     down by one, or can stay the same. This means that the transition matrix is tridiagonal, which means that
     mathematical solutions are easier for the Moran model than for the Wright-Fisher model. On the other hand,
     computer simulations are usually easier to perform using the Wright-Fisher model, because fewer time steps need to
     be calculated. In the Moran model, it takes N timesteps to get through one generation, where N is the effective
     population size. In the Wright-Fisher model, it takes just one.
     In practice, the Moran model and Wright-Fisher model give qualitatively similar results, but genetic drift runs twice
     as fast in the Moran model.
Genetic drift                                                                                                                  226
     where T is the number of generations, Ne is the effective population size, and p is the initial frequency for the given
     allele. The result is the number of generations expected to pass before fixation occurs for a given allele in a
     population with given size (Ne) and allele frequency (p).[16]
     The expected time for the neutral allele to be lost through genetic drift can be calculated as[17]
     These calculations are also used to understand the impact genetic drift will have on a new allele introduced through
     genetic mutation. In estimating the drift of a neutral mutation in a large population, (which can be assumed to begin
     as a single occurrence of the allele and thus its initial frequency will be negligible), the formulas can be simplified
     to[18]
     for average number of generations needed for fixation of a neutral mutation, and
Genetic drift                                                                                                                     228
     for the average number of generations needed for the loss of a neutral mutation.[19] In cases where Ne and N are
     assumed to be equal, the ratio of time-to-fixation over time-to-loss is[16]
     linkage decreases and with it this local effect on drift.[24] [25] This effect is visible in molecular data as a correlation
     between local recombination rate and genetic diversity,[26] and negative correlation between gene density and
     diversity at noncoding sites.[27]
     Population bottleneck
     A population bottleneck is when a
     population contracts to a significantly
     smaller size over a short period of time
     due to some random environmental
     event.[28] In a true population
     bottleneck, the odds for survival of any
     member of the population are purely
     random, and are not improved by any
     particular inherent genetic advantage.
     The bottleneck can result in radical
     changes     in     allele   frequencies,
     completely independent of selection.
     And its impact can be sustained, even
     when the bottleneck is caused by a
                                                     Changes in a population's allele frequency following a population bottleneck: the rapid
     one-time event such as a natural                  and radical decline in population size has reduced the population's genetic variation.
     catastrophe. Even when the allele
     frequency of the original population is carried forward in the surviving population, a radical reduction in population
     size increases the likelihood of further allele fluctuation from drift in generations to come.
     A population's genetic variation can be greatly reduced by a bottleneck, and even beneficial adaptations may be
     permanently eliminated.[29] The loss of variation leaves the surviving population vulnerable to any new selection
     pressures such as disease, climate change or shift in the available food source, because adapting in response to
     environmental changes requires sufficient genetic variation in the population for natural selection to take place.[30]
     [31]
     There have been many known cases of population bottleneck in the recent past. Prior to the arrival of Europeans,
     North American prairies were habitat for millions of greater prairie chickens. In Illinois alone, their numbers
     plummeted from about 100 million birds in 1900 to about 50 birds in the 1990s. The declines in population resulted
     from hunting and habitat destruction, but the random consequence has been a loss of most of the species' genetic
     diversity. DNA analysis comparing birds from the mid century to birds in the 1990s documents a steep decline in the
     genetic variation in just in the latter few decades. Currently the greater prairie chicken is experiencing low
     reproductive success.[32]
     Over-hunting also caused a severe population bottleneck in the northern elephant seal in the 19th century. Their
     resulting decline in genetic variation can be deduced by comparing it to that of the southern elephant seal which were
     not so aggressively hunted.[33]
Genetic drift                                                                                                                                    230
     Founder effect
                                                                                                    The founder effect is a special case of
                                                                                                    genetic drift, occurring when a small
                                                                                                    group in a population splinters off
                                                                                                    from the original population and forms
                                                                                                    a new one. The random sample of
                                                                                                    alleles in the just formed new colony is
                                                                                                    expected to grossly misrepresent the
                                                                                                    original population in at least some
                                                                                                    respects.[34] It is even possible that the
                                                                                                    number of alleles for some genes in the
                                                                                                    original population is larger than the
                                                                                                    number of gene copies in the founders,
                                                                                                    making       complete      representation
        When very few members of a population migrate to form a separate new population, the
       founder effect occurs. For a period after the foundation, the small population experiences   impossible. When a newly formed
                  intensive drift. In the figure this results in fixation of the red allele.        colony is small, its founders can
                                                                                                    strongly affect the population's genetic
     make-up far into the future.
     A well documented example is found in the Amish migration to Pennsylvania in 1744. Two members of the new
     colony shared the recessive allele for Ellis–van Creveld syndrome. Members of the colony and their descendants
     tend to be religious isolates and remain relatively insular. As a result of many generations of inbreeding, Ellis-van
     Creveld syndrome is now much more prevalent among the Amish than in the general population.[21] [35]
     The difference in gene frequencies between the original population and colony may also trigger the two groups to
     diverge significantly over the course of many generations. As the difference, or genetic distance, increases, the two
     separated populations may become distinct, both genetically and phenetically, although not only genetic drift but
     also natural selection, gene flow and mutation will all contribute to this divergence. This potential for relatively rapid
     changes in the colony's gene frequency led most scientists to consider the founder effect (and by extension, genetic
     drift) a significant driving force in the evolution of new species. Sewall Wright was the first to attach this
     significance to random drift and small, newly isolated populations with his shifting balance theory of speciation.[36]
     Following after Wright, Ernst Mayr created many persuasive models to show that the decline in genetic variation and
     small population size following the founder effect were critically important for new species to develop.[37] However,
     there is much less support for this view today since the hypothesis has been tested repeatedly through experimental
     research and the results have been equivocal at best.[38]
     them away from adaptive peaks, which would in turn allow natural selection to push them towards new adaptive
     peaks.[41] Wright thought smaller populations were more suited for natural selection because "inbreeding was
     sufficiently intense to create new interaction systems through random drift but not intense enough to cause random
     nonadaptive fixation of genes."[40]
     Wright's views on the role of genetic drift in the evolutionary scheme were controversial almost from the very
     beginning. One of the most vociferous and influential critics was colleague Ronald Fisher. Fisher conceded genetic
     drift played some role in evolution, but an insignificant one. Fisher has been accused of misunderstanding Wright's
     views because in his criticisms Fisher seemed to argue Wright had rejected selection almost entirely. To Fisher,
     viewing the process of evolution as a long, steady, adaptive progression was the only way to explain the ever
     increasing complexity from simpler forms. But the debates have continued between the "gradualists" and those who
     lean more toward the Wright model of evolution where selection and drift together play an important role.[2]
     In 1968,[42] population geneticist Motoo Kimura rekindled the debate with his neutral theory of molecular evolution,
     which claims that most of the genetic changes are caused by genetic drift acting on neutral mutations.[3]
     See also
     • Allopatric speciation
     • Antigenic drift
     • Gene pool
     • Small population size
     Notes
     [1]  Futuyma, Douglas (1998). Evolutionary Biology. Sinauer Associates. p. Glossary. ISBN 0-87893-189-9.
     [2]  Avers, Charlotte (1989). Process and Pattern in Evolution. Oxford University Press.
     [3]  Futuyma, Douglas (1998). Evolutionary Biology. Sinauer Associates. p. 320. ISBN 0-87893-189-9.
     [4]  "Evolution 101:Sampling Error and Evolution" (http:/ / evolution. berkeley. edu/ evosite/ evo101/ IIID1Samplingerror. shtml). University of
         California Berkeley. . Retrieved 2009-11-01.
     [5] Zimmer, Carl (2002). Evolution : The Triumph of an Idea. New York, NY: Perennial. pp. 364. ISBN 0-06-095850-2.
     [6] Walker J. "Introduction to Probability and Statistics" (http:/ / www. fourmilab. ch/ rpkp/ experiments/ statistics. html). The
         RetroPsychoKinesis Project. Fourmilab. . Retrieved 2009-11-17.
     [7] Hartl, Daniel (2007). Principles of Population Genetics. Sinauer Associates. p. 102. ISBN 978-0-87893-308-2.
     [8] Li, Wen-Hsiung; Dan Graur (1991). Fundamentals of Molecular Evolution. Sinauer Associates. p. 28. ISBN 0-87893-452-9.
     [9] Gillespie, John H. (2001). "Is the population size of a species relevant to its evolution?". Evolution 55 (11): 2161–2169. PMID 11794777.
     [10] Hartwell el al, Leland (2004). Genetics: From Genes to Genomes; 2nd edition. McGraw Hill. p. 680. ISBN 0-07-246248-5.
     [11] Hartl, Daniel; Andrew Clark (2007). Principles of Population Genetics. Sinauer Associates. p. 102. ISBN 978-0-87893-308-2.
     [12] Li, Wen-Hsiung; Dan Graur (1991). Fundamentals of Molecular Evolution. Sinauer Associates. p. 29. ISBN 0-87893-452-9.
     [13] Futuyma, Douglas (1998). Evolutionary Biology. Sinauer Associates. p. 300. ISBN 0-87893-189-9.
     [14] Otto S, Whitlock M (1 June 1997). "The probability of fixation in populations of changing size" (http:/ / www. pubmedcentral. nih. gov/
         articlerender. fcgi?tool=pubmed& pubmedid=9178020). Genetics 146 (2): 723–33. PMID 9178020. PMC 1208011. .
     [15] Charlesworth B (March 2009). "Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and
         variation". Nat. Rev. Genet. 10 (3): 195–205. doi:10.1038/nrg2526. PMID 19204717.
     [16] Hedrick, Philip W. (2004). Genetics of Populations. Jones and Bartlett Publishers. pp. 737. ISBN 0763747726.
     [17] Daniel Hartl, Andrew Clark (2007). Principles of Population Genetics, 4th edition. Sinauer Associates. p. 112. ISBN 978-0-87893-308-2.
     [18] Wen-Hsiung Li, Dan Graur (1991). Fundamentals of Molecular Evolution. Sinauer Associates. p. 33. ISBN 978-0-87893-452-9.
     [19] Kimura, Motoo; Ohta, Tomoko (2001). Theoretical Aspects of Population Genetics. Princeton University Press. pp. 232. ISBN 0691080984.
     [20] "Natural Selection: How Evolution Works (An interview with Douglas Futuyma, see answer to question Is natural selection the only
         mechanism of evolution?)" (http:/ / www. actionbioscience. org/ evolution/ futuyma. html). ActionBioscience.org. . Retrieved 2009-11-24.
     [21] Cavalli-Sforza, L. L.; Menozzi, Paolo; Piazza, Alberto (1996). The history and geography of human genes. Princeton, N.J.: Princeton
         University Press. pp. 413. ISBN 0-691-02905-9.
     [22] Small KS, Brudno M, Hill MM, Sidow A (March 2007). "Extreme genomic variation in a natural population" (http:/ / www. pnas. org/
         content/ 104/ 13/ 5698. long). Proc. Natl. Acad. Sci. U.S.A. 104 (13): 5698–703. doi:10.1073/pnas.0700890104. PMID 17372217.
         PMC 1838466. .
     [23] Simpson, George Gaylord (1967). The Meaning of Evolution (Second ed.). Yale University Press.
Genetic drift                                                                                                                                             232
     [24] Golding B (1994). Non-neutral evolution: theories and molecular data. Springer. pp. 46. ISBN 978-0-412-05391-7.
     [25] Charlesworth B, Morgan MT, Charlesworth D (August 1993). "The effect of deleterious mutations on neutral molecular variation" (http:/ /
         www. genetics. org/ cgi/ reprint/ 134/ 4/ 1289). Genetics 134 (4): 1289–303. PMID 8375663. PMC 1205596. .
     [26] Presgraves DC (September 2005). "Recombination enhances protein adaptation in Drosophila melanogaster". Curr. Biol. 15 (18): 1651–6.
         doi:10.1016/j.cub.2005.07.065. PMID 16169487.
     [27] Nordborg M, Hu TT, Ishino Y, et al. (July 2005). "The pattern of polymorphism in Arabidopsis thaliana" (http:/ / www. pubmedcentral. nih.
         gov/ articlerender. fcgi?tool=pmcentrez& artid=1135296). PLoS Biol. 3 (7): e196. doi:10.1371/journal.pbio.0030196. PMID 15907155.
         PMC 1135296.
     [28] Population Bottleneck | Macmillan Genetics (http:/ / www. bookrags. com/ research/ population-bottleneck-gen-03/ )
     [29] Futuyma, Douglas (1998). Evolutionary Biology. Sinauer Associates. pp. 303–304. ISBN 0-87893-189-9.
     [30] O'Corry-Crowe G (2008). "Climate change and the molecular ecology of arctic marine mammals" (http:/ / www. esajournals. org/ doi/ full/
         10. 1890/ 06-0795. 1). Ecological Applications 18 (2 Suppl): S56–S76. doi:10.1890/06-0795.1. PMID 18494363. .
     [31] Cornuet JM, Luikart G (1996). "Description and power analysis of two tests for detecting recent population bottlenecks from allele
         frequency data" (http:/ / www. pubmedcentral. nih. gov/ articlerender. fcgi?tool=pmcentrez& artid=1207747). Genetics 144 (4): 2001–14.
         PMID 8978083. PMC 1207747.
     [32] Hillis, David M.; Sadava, David E.; Heller, Craig H.; Orians, Gordon H.; Purves, William K. (2006). "Chs. 1, 21–33, 52–57". Life: The
         Science of Biology. II: Evolution, Diversity and Ecology. San Francisco: W. H. Freeman. pp. 1251. ISBN 9780716798569.
     [33] "Evolution 101: Bottlenecks and Founder Effects" (http:/ / evolution. berkeley. edu/ evosite/ evo101/ IIID3Bottlenecks. shtml). University of
         California, Berkeley. . Retrieved 2009-04-07.
     [34] Neill, Campbell (1996). Biology; Fourth edition. The Benjamin/Cummings Publishing Company. p. 423. ISBN 0-8053-1940-9.
     [35] "Genetic Drift and the Founder Effect" (http:/ / www. pbs. org/ wgbh/ evolution/ library/ 06/ 3/ l_063_03. html). Evolution. Public Broadcast
         System. . Retrieved 2009-04-07.
     [36] Wade, Michael S.; Wolf, Jason; Brodie, Edmund D. (2000). Epistasis and the evolutionary process. Oxford [Oxfordshire]: Oxford
         University Press. p. 330. ISBN 0-19-512806-0.
     [37] Mayr, Ernst, Jody Hey, Walter M. Fitch, Francisco José Ayala (2005). Systematics and the Origin of Species: on Ernst Mayr's 100th
         anniversary (Illustrated ed.). National Academies Press. p. 367. ISBN 9780309095365.
     [38] Howard, Daniel J.; Berlocher, Steward H. (1998). Endless Forms (Illustrated ed.). United States: Oxford University Press. p. 470.
         ISBN 9780195109016.
     [39] Wright S (1929). "The evolution of dominance". The American Naturalist 63 (689): 556–61. doi:10.1086/280290.
     [40] Stevenson, Joan C. (1991). Dictionary of Concepts in Physical Anthropology. Westport, Conn: Greenwood Press. ISBN 0-313-24756-0.
     [41] Larson, Edward J. (2004). Evolution: The Remarkable History of a Scientific Theory. Modern Library. ISBN 978-0679642886.
     [42] Kimura M (1968). "Evolutionary rate at the molecular level". Nature 217 (5129): 624–26. doi:10.1038/217624a0. PMID 5637732.
     External links
     • The TalkOrigins Archive (http://www.talkorigins.org/faqs/genetic-drift.html)
     • Genetic drift illustrations in Barton et al. (http://www.evolution-textbook.org/content/free/figures/ch15.
       html)
Gene flow                                                                                                                       233
    Gene flow
    In population genetics, gene flow (also known as gene migration) is the transfer of alleles of genes from one
    population to another.
    Migration into or out of a population may be responsible for a marked change in allele frequencies (the proportion of
    members carrying a particular variant of a gene). Immigration may also result in the addition of new genetic variants
    to the established gene pool of a particular species or population.
    There are a number of factors that affect the rate of gene flow between different populations. One of the most
    significant factors is mobility, as greater mobility of an individual tends to give it greater migratory potential.
    Animals tend to be more mobile than plants, although pollen and seeds may be carried great distances by animals or
    wind.
    Maintained gene flow between two populations can also lead to a combination of the two gene pools, reducing the
    genetic variation between the two groups. It is for this reason that gene flow strongly acts against speciation, by
    recombining the gene pools of the groups, and thus, repairing the developing differences in genetic variation that
    would have led to full speciation and creation of daughter species.
    For example, if a species of grass grows on both sides of a highway, pollen is likely to be transported from one side
    to the other and vice versa. If this pollen is able to fertilize the plant where it ends up and produce viable offspring,
    then the alleles in the pollen have effectively been able to move from the population on one side of the highway to
    the other.
    Genetic pollution
    Purebred, naturally-evolved, region-specific, wild species can be threatened with extinction[7] through the process of
    genetic pollution, potentially causing uncontrolled hybridization, introgression and genetic swamping. These
    processes can lead to homogenization or replacement of local genotypes as a result of either a numerical and/or
    fitness advantage of introduced plant or animal[8] . Nonnative species can bring about a form of extinction of native
    plants and animals by hybridization and introgression either through purposeful introduction by humans or through
    habitat modification, bringing previously isolated species into contact. These phenomena can be especially
    detrimental for rare species coming into contact with more abundant ones. Interbreeding between the species can
    cause a 'swamping' of the rarer species' gene pool, creating hybrids that drive the originally purebred native stock to
    complete extinction. The extent of this facet of gene flow is not always apparent from morphological (outward
    appearance) observations alone. Some degree of gene flow may be due to normal, evolutionarily constructive
    processes, and all constellations of genes and genotypes cannot be preserved. That being said, hybridization with or
    without introgression may threaten a rare species' existence nonetheless.[9] [10] .
    Scientists in several large research programmes are investigating methods of limiting gene flow in plants. Among
    these programmes are Transcontainer, which investigates methods for biocontainment, SIGMEA, which focuses on
    the biosafety of genetically modified plants, and Co-Extra, which studies the co-existence of GM and non-GM
    product chains.
    Generally, there are three approaches to gene flow mitigation: keeping the genetic modification out of the pollen,
    preventing the formation of pollen, and keeping the pollen inside the flower.
    • The first approach requires transplastomic plants. In transplastomic plants, the modified DNA is not situated in
      the cell's nucleus but is present in plastids, which are cellular compartments outside the nucleus. An example for
      plastids are chloroplasts, in which photosynthesis occurs. In some plants, the pollen does not contain plastids and,
      consequently, any modification located in plastids cannot be transmitted by the pollen.
    • The second approach relies on male sterile plants. Male sterile plants are unable to produce functioning flowers
      and therefore cannot release viable pollen. Cytoplasmic male sterile plants are known to produce higher yields.
      Therefore, researchers are trying to introduce this trait to genetically modified crops.
    • The third approach works by preventing the flowers from opening. This trait is called cleistogamy and occurs
      naturally in some plants. Cleistogamous plants produce flowers which either open only partly or not at all.
      However, it remains unclear how reliable cleistogamy is for gene flow mitigation: a Co-Extra research project on
      rapeseed investigating the matter has published preliminary results which cast doubt on the attainment of a high
      degree of reliability.
    See also
    • Biological dispersal
    • Genetic erosion
    • Genetic admixture
    External links
    • Co-Extra research on gene flow mitigation [11]
    • Transcontainer research on biocontainment [12]
    • SIGMEA research on the biosafety of GMOs: http://sigmea.dyndns.org [13]
    References
    [1] http:/ / www. nature. com/ hdy/ journal/ v90/ n3/ full/ 6800237a. html
    [2] http:/ / 66. 102. 7. 104/ search?q=cache:tpICVNWaTbgJ:non. fiction. org/ lj/ community/ ref_courses/ 3484/ enmicro. pdf+ sex+ evolution+
        %22Horizontal+ gene+ transfer%22+ -human+ Conjugation+ RNA+ DNA& hl=en
    [3] http:/ / www2. nau. edu/ ~bah/ BIO471/ Reader/ Pennisi_2003. pdf
    [4] http:/ / opbs. okstate. edu/ ~melcher/ MG/ MGW3/ MG334. html
    [5] http:/ / www. esalenctr. org/ display/ confpage. cfm?confid=10& pageid=105& pgtype=1
    [6] http:/ / web. uconn. edu/ gogarten/ articles/ TIG2004_cladogenesis_paper. pdf
    [7] Hybridization and Introgression; Extinctions; from "The evolutionary impact of invasive species; by H. A. Mooney and E. E. Cleland" Proc
        Natl Acad Sci U S A. 2001 May 8; 98(10): 5446–5451. doi: 10.1073/pnas.091093398. Proc Natl Acad Sci U S A, v.98(10); May 8, 2001, The
        National Academy of Sciences (http:/ / www. pubmedcentral. nih. gov/ articlerender. fcgi?artid=33232)
    [8] Glossary: definitions from the following publication: Aubry, C., R. Shoal and V. Erickson. 2005. Grass cultivars: their origins, development,
        and use on national forests and grasslands in the Pacific Northwest. USDA Forest Service. 44 pages, plus appendices.; Native Seed Network
        (NSN), Institute for Applied Ecology, 563 SW Jefferson Ave, Corvallis, OR 97333, USA (http:/ / www. nativeseednetwork. org/
        article_view?id=13)
    [9] EXTINCTION BY HYBRIDIZATION AND INTROGRESSION; by Judith M. Rhymer , Department of Wildlife Ecology, University of
        Maine, Orono, Maine 04469, USA; and Daniel Simberloff, Department of Biological Science, Florida State University, Tallahassee, Florida
        32306, USA; Annual Review of Ecology and Systematics, November 1996, Vol. 27, Pages 83-109 (doi: 10.1146/annurev.ecolsys.27.1.83)
        (http:/ / arjournals. annualreviews. org/ doi/ abs/ 10. 1146/ annurev. ecolsys. 27. 1. 83), (http:/ / links. jstor. org/
        sici?sici=0066-4162(1996)27<83:EBHAI>2. 0. CO;2-A#abstract)
Gene flow                                                                                                                                   236
    [10] Genetic Pollution from Farm Forestry using eucalypt species and hybrids; A report for the RIRDC/L&WA/FWPRDC; Joint Venture
        Agroforestry Program; by Brad M. Potts, Robert C. Barbour, Andrew B. Hingston; September 2001; RIRDC Publication No 01/114; RIRDC
        Project No CPF - 3A; ISBN 0 642 58336 6; ISSN 1440-6845; Australian Government, Rural Industrial Research and Development
        Corporation (http:/ / www. rirdc. gov. au/ reports/ AFT/ 01-114. pdf)
    [11] http:/ / www. coextra. eu/ research_themes/ topics188. html
    [12] http:/ / www. transcontainer. org/ UK
    [13] http:/ / sigmea. dyndns. org
    • Su, H et al. (2003) "The Great Wall of China: a physical barrier to gene flow?." Heredity, Volume 9 Pages
      212-219
    Mutation
    Mutations are changes in a genomic sequence: the DNA sequence of a cell's genome or the DNA or RNA sequence
    of a virus. Mutations are caused by radiation, viruses, transposons and mutagenic chemicals, as well as errors that
    occur during meiosis or DNA replication.[1] [2] [3] They can also be induced by the organism itself, by cellular
    processes such as hypermutation.
    Mutation can result in several different types of change in DNA sequences; these can either have no effect, alter the
    product of a gene, or prevent the gene from functioning properly or completely. Studies in the fly Drosophila
    melanogaster suggest that if a mutation changes a protein produced by a gene, this will probably be harmful, with
    about 70 percent of these mutations having damaging effects, and the remainder being either neutral or weakly
    beneficial.[4] Due to the damaging effects that mutations can have on cells, organisms have evolved mechanisms
    such as DNA repair to remove mutations.[1] Therefore, the optimal mutation rate for a species is a trade-off between
    costs of a high mutation rate, such as deleterious mutations, and the metabolic costs of maintaining systems to reduce
    the mutation rate, such as DNA repair enzymes.[5] Viruses that use RNA as their genetic material have rapid
    mutation rates,[6] which can be an advantage since these viruses will evolve constantly and rapidly, and thus evade
    the defensive responses of e.g. the human immune system.[7]
    Description
    Mutations can involve large sections of DNA becoming duplicated, usually through genetic recombination.[8] These
    duplications are a major source of raw material for evolving new genes, with tens to hundreds of genes duplicated in
    animal genomes every million years.[9] Most genes belong to larger families of genes of shared ancestry.[10] Novel
    genes are produced by several methods, commonly through the duplication and mutation of an ancestral gene, or by
    recombining parts of different genes to form new combinations with new functions.[11] [12] Here, domains act as
    modules, each with a particular and independent function, that can be mixed together to produce genes encoding new
    proteins with novel properties.[13] For example, the human eye uses four genes to make structures that sense light:
    three for color vision and one for night vision; all four arose from a single ancestral gene.[14] Another advantage of
    duplicating a gene (or even an entire genome) is that this increases redundancy; this allows one gene in the pair to
    acquire a new function while the other copy performs the original function.[15] [16] Other types of mutation
    occasionally create new genes from previously noncoding DNA.[17] [18]
    Changes in chromosome number may involve even larger mutations, where segments of the DNA within
    chromosomes break and then rearrange. For example, two chromosomes in the Homo genus fused to produce human
    chromosome 2; this fusion did not occur in the lineage of the other apes, and they retain these separate
    chromosomes.[19] In evolution, the most important role of such chromosomal rearrangements may be to accelerate
    the divergence of a population into new species by making populations less likely to interbreed, and thereby
    preserving genetic differences between these populations.[20]
Mutation                                                                                                                             237
    Sequences of DNA that can move about the genome, such as transposons, make up a major fraction of the genetic
    material of plants and animals, and may have been important in the evolution of genomes.[21] For example, more
    than a million copies of the Alu sequence are present in the human genome, and these sequences have now been
    recruited to perform functions such as regulating gene expression.[22] Another effect of these mobile DNA sequences
    is that when they move within a genome, they can mutate or delete existing genes and thereby produce genetic
    diversity.[2]
    In multicellular organisms with dedicated reproductive cells, mutations
    can be subdivided into germ line mutations, which can be passed on to
    descendants through their reproductive cells, and somatic mutations
    (also called acquired mutations)[23] , which involve cells outside the
    dedicated reproductive group and which are not usually transmitted to
    descendants. If the organism can reproduce asexually through
    mechanisms such as cuttings or budding the distinction can become
    blurred.
    Causes
    Two classes of mutations are spontaneous mutations (molecular decay) and induced mutations caused by mutagens.
    Spontaneous mutations on the molecular level can be caused by:
    • Tautomerism – A base is changed by the repositioning of a hydrogen atom, altering the hydrogen bonding pattern
      of that base resulting in incorrect base pairing during replication.
    • Depurination – Loss of a purine base (A or G) to form an apurinic site (AP site).
    • Deamination – Hydrolysis changes a normal base to an atypical base containing a keto group in place of the
      original amine group. Examples include C → U and A → HX (hypoxanthine), which can be corrected by DNA
      repair mechanisms; and 5MeC (5-methylcytosine) → T, which is less likely to be detected as a mutation because
      thymine is a normal DNA base.
    • Slipped strand mispairing - Denaturation of the new strand from the template during replication, followed by
      renaturation in a different spot ("slipping"). This can lead to insertions or deletions.
    Induced mutations on the molecular level can be
    caused by:
    • Chemicals
       • Hydroxylamine NH2OH
       • Base analogs (e.g. BrdU)
       • Alkylating agents (e.g. N-ethyl-N-nitrosourea)
         These agents can mutate both replicating and
         non-replicating DNA. In contrast, a base analog
         can only mutate the DNA when the analog is
         incorporated in replicating the DNA. Each of
         these classes of chemical mutagens has certain
         effects that then lead to transitions, transversions,
         or deletions.
       • Agents that form DNA adducts (e.g. ochratoxin
         A metabolites)[26]
       • DNA intercalating agents (e.g. ethidium bromide)
      • DNA crosslinkers
      • Oxidative damage
      • Nitrous acid converts amine groups on A and C
        to diazo groups, altering their hydrogen bonding
        patterns which leads to incorrect base pairing
                                                                 A covalent adduct between benzo[a]pyrene, the major mutagen in
        during replication.                                                       tobacco smoke, and DNA
                                                                                                          [25]
    • Radiation
       • Ultraviolet radiation (nonionizing radiation). Two nucleotide bases in DNA – cytosine and thymine – are most
         vulnerable to radiation that can change their properties. UV light can induce adjacent pyrimidine bases in a
         DNA strand to become covalently joined as a pyrimidine dimer. UV radiation, particularly longer-wave UVA,
         can also cause oxidative damage to DNA[27] .
      • Ionizing radiation
    • Viral infections[28]
    DNA has so-called hotspots, where mutations occur up to 100 times more frequently than the normal mutation rate.
    A hotspot can be at an unusual base, e.g., 5-methylcytosine.
    Mutation rates also vary across species. Evolutionary biologists have theorized that higher mutation rates are
    beneficial in some situations, because they allow organisms to evolve and therefore adapt more quickly to their
Mutation                                                                                                                                   239
    environments. For example, repeated exposure of bacteria to antibiotics, and selection of resistant mutants, can result
    in the selection of bacteria that have a much higher mutation rate than the original population (mutator strains).
    By effect on structure
    The sequence of a gene can be altered in a
    number of ways. Gene mutations have
    varying effects on health depending on
    where they occur and whether they alter the
    function of essential proteins. Mutations in
    the structure of genes can be classified as:
    • Small-scale mutations, such as those
      affecting a small gene in one or a few
      nucleotides, including:
       • Point mutations, often caused by
         chemicals or malfunction of DNA
         replication, exchange a single
         nucleotide for another[30] . These
         changes are classified as transitions or
         transversions[31] . Most common is
         the transition that exchanges a purine
         for a purine (A ↔ G) or a pyrimidine
         for a pyrimidine, (C ↔ T). A
         transition can be caused by nitrous
         acid, base mis-pairing, or mutagenic
         base analogs such as
                                                                                         Illustrations of five types of chromosomal
         5-bromo-2-deoxyuridine (BrdU). Less                                                               mutations.
         common is a transversion, which
         exchanges a purine for a pyrimidine
         or a pyrimidine for a purine (C/T ↔
         A/G). An example of a transversion is
         adenine (A) being converted into a
         cytosine (C). A point mutation can be
         reversed by another point mutation, in
         which the nucleotide is changed back
         to its original state (true reversion) or
         by second-site reversion (a
         complementary mutation elsewhere
         that results in regained gene
         functionality). Point mutations that
         occur within the protein coding region       Selection of disease-causing mutations, in a standard table of the genetic code of
                                                                                                   [29]
                                                                                     amino acids.
         of a gene may be classified into three
         kinds, depending upon what the
         erroneous codon codes for:
Mutation                                                                                                                     240
    By effect on function
    • Loss-of-function mutations are the result of gene product having less or no function. When the allele has a
      complete loss of function (null allele) it is often called an amorphic mutation. Phenotypes associated with such
      mutations are most often recessive. Exceptions are when the organism is haploid, or when the reduced dosage of a
      normal gene product is not enough for a normal phenotype (this is called haploinsufficiency).
    • Gain-of-function mutations change the gene product such that it gains a new and abnormal function. These
      mutations usually have dominant phenotypes. Often called a neomorphic mutation.
    • Dominant negative mutations (also called antimorphic mutations) have an altered gene product that acts
      antagonistically to the wild-type allele. These mutations usually result in an altered molecular function (often
      inactive) and are characterised by a dominant or semi-dominant phenotype. In humans, Marfan syndrome is an
      example of a dominant negative mutation occurring in an autosomal dominant disease. In this condition, the
      defective glycoprotein product of the fibrillin gene (FBN1) antagonizes the product of the normal allele.
    • Lethal mutations are mutations that lead to the death of the organisms which carry the mutations.
    • A back mutation or reversion is a point mutation that restores the original sequence and hence the original
      phenotype.[32]
Mutation                                                                                                                        241
    By effect on fitness
    In applied genetics it is usual to speak of mutations as either harmful or beneficial.
    • A harmful mutation is a mutation that decreases the fitness of the organism.
    • A beneficial mutation is a mutation that increases fitness of the organism, or which promotes traits that are
      desirable.
    In theoretical population genetics, it is more usual to speak of such mutations as deleterious or advantageous. In the
    neutral theory of molecular evolution, genetic drift is the basis for most variation at the molecular level.
    • A neutral mutation has no harmful or beneficial effect on the organism. Such mutations occur at a steady rate,
      forming the basis for the molecular clock.
    • A deleterious mutation has a negative effect on the phenotype, and thus decreases the fitness of the organism.
    • An advantageous mutation has a positive effect on the phenotype, and thus increases the fitness of the organism.
    • A nearly neutral mutation is a mutation that may be slightly deleterious or advantageous, although most nearly
      neutral mutations are slightly deleterious.
    In reality, viewing the fitness effects of mutations in these discrete categories is an oversimplification. Attempts have
    been made to infer the distribution of fitness effects using mutagenesis experiments or theoretical models applied to
    molecular sequence data. However, the current distribution is still uncertain, and some aspects of the distribution
    likely vary between species.[33]
    By inheritance
    • inheritable generic in pro-generic tissue or cells on path to be changed to gametes.
    • non inheritable somatic (e.g., carcinogenic mutation)
    • non inheritable post mortem aDNA mutation in decaying remains.
    By pattern of inheritance The human genome contains two copies of each gene – a paternal and a maternal allele.
    • A heterozygous mutation is a mutation of only one allele.
    • A homozygous mutation is an identical mutation of both the paternal and maternal alleles.
    • Compound heterozygous mutations or a genetic compound comprises two different mutations in the paternal
      and maternal alleles.[34]
    • A wildtype or homozygous non-mutated organism is one in which neither allele is mutated. (Just not a
      mutation)
       intended arginine.
    • Silent mutations are mutations that do not result in a change to the amino acid sequence of a protein. They may
      occur in a region that does not code for a protein, or they may occur within a codon in a manner that does not alter
      the final amino acid sequence. The phrase silent mutation is often used interchangeably with the phrase
      synonymous mutation; however, synonymous mutations are a subcategory of the former, occurring only within
      exons. The name silent could be a misnomer. For example, a silent mutation in the exon/intron border may lead to
      alternative splicing by changing the splice site (see Splice site mutation), thereby leading to a changed protein.
    Special classes
    • Conditional mutation is a mutation that has wild-type (or less severe) phenotype under certain "permissive"
      environmental conditions and a mutant phenotype under certain "restrictive" conditions. For example, a
      temperature-sensitive mutation can cause cell death at high temperature (restrictive condition), but might have no
      deleterious consequences at a lower temperature (permissive condition).
    Nomenclature
    Nomenclature of mutations specify the type of mutation and base or amino acid changes.
    • Nucleotide substitution (e.g. 76A>T) - The number is the position of the nucleotide from the 5' end, the first letter
      represents the wild type nucleotide, and the second letter represents the nucleotide which replaced the wild type.
      In the given example, the adenine at the 76th position was replaced by a thymine.
      • If it becomes necessary to differentiate between mutations in genomic DNA, mitochondrial DNA, and RNA, a
         simple convention is used. For example, if the 100th base of a nucleotide sequence mutated from G to C, then
         it would be written as g.100G>C if the mutation occurred in genomic DNA, m.100G>C if the mutation
         occurred in mitochondrial DNA, or r.100g>c if the mutation occurred in RNA. Note that for mutations in
         RNA, the nucleotide code is written in lower case.
    • Amino acid substitution (e.g. D111E) – The first letter is the one letter code of the wild type amino acid, the
      number is the position of the amino acid from the N terminus, and the second letter is the one letter code of the
      amino acid present in the mutation. Nonsense mutations are represented with an X for the second amino acid (e.g.
      D111X).
    • Amino acid deletion (e.g. ΔF508) – The Greek letter Δ (delta) indicates a deletion. The letter refers to the amino
      acid present in the wild type and the number is the position from the N terminus of the amino acid were it to be
      present as in the wild type.
    Harmful mutations
    Changes in DNA caused by mutation can cause errors in protein sequence, creating partially or completely
    non-functional proteins. To function correctly, each cell depends on thousands of proteins to function in the right
    places at the right times. When a mutation alters a protein that plays a critical role in the body, a medical condition
    can result. A condition caused by mutations in one or more genes is called a genetic disorder. Some mutations alter a
    gene's DNA base sequence but do not change the function of the protein made by the gene. Studies of the fly
    Drosophila melanogaster suggest that if a mutation does change a protein, this will probably be harmful, with about
    70 percent of these mutations having damaging effects, and the remainder being either neutral or weakly
    beneficial.[35] However, studies in yeast have shown that only 7% of mutations that are not in genes are harmful.[36]
    If a mutation is present in a germ cell, it can give rise to offspring that carries the mutation in all of its cells. This is
    the case in hereditary diseases. On the other hand, a mutation may occur in a somatic cell of an organism. Such
    mutations will be present in all descendants of this cell within the same organism, and certain mutations can cause
    the cell to become malignant, and thus cause cancer[37] .
Mutation                                                                                                                         243
    Often, gene mutations that could cause a genetic disorder are repaired by the DNA repair system of the cell. Each
    cell has a number of pathways through which enzymes recognize and repair mistakes in DNA. Because DNA can be
    damaged or mutated in many ways, the process of DNA repair is an important way in which the body protects itself
    from disease.
    Beneficial mutations
    Although most mutations that change protein sequences are neutral or harmful, some mutations have a positive effect
    on an organism. In this case, the mutation may enable the mutant organism to withstand particular environmental
    stresses better than wild-type organisms, or reproduce more quickly. In these cases a mutation will tend to become
    more common in a population through natural selection.
    For example, a specific 32 base pair deletion in human CCR5 (CCR5-Δ32) confers HIV resistance to homozygotes
    and delays AIDS onset in heterozygotes.[38] The CCR5 mutation is more common in those of European descent. One
    possible explanation of the etiology of the relatively high frequency of CCR5-Δ32 in the European population is that
    it conferred resistance to the bubonic plague in mid-14th century Europe. People with this mutation were more likely
    to survive infection; thus its frequency in the population increased.[39] This theory could explain why this mutation is
    not found in southern Africa, where the bubonic plague never reached. A newer theory suggests that the selective
    pressure on the CCR5 Delta 32 mutation was caused by smallpox instead of the bubonic plague.[40]
    Another example, is Sickle cell disease which is a blood disorder in which the body produces an abnormal type of
    the oxygen-carrying substance hemoglobin in the red blood cells. One-third of all indigenous inhabitants of
    Sub-Saharan Africa carry the gene[41] , because in areas where malaria is common, there is a survival value in
    carrying only a single sickle-cell gene (sickle cell trait).[42] Those with only one of the two alleles of the sickle-cell
    disease are more resistant to malaria, since the infestation of the malaria plasmodium is halted by the sickling of the
    cells which it infests.
    Prion mutation
    Prions are proteins and do not contain genetic material. However, prion replication has been shown to be subject to
    mutation and natural selection just like other forms of replication.[43]
    See also
    •   Aneuploidy
    •   Antioxidant
    •   Budgerigar colour genetics
    •   Homeobox
    •   Macromutation
    •   Muller's morphs
    •   Mutant
    •   Mutagenesis
    •   Polyploidy
    •   Robertsonian translocation
    •   Signature tagged mutagenesis
    •   Site-directed mutagenesis
    •   TILLING (molecular biology)
    •   Trinucleotide repeat expansion
Mutation                                                                                                                                               244
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    External links
    • "All About Mutations" (http://hopes.stanford.edu/causes/mutation/q0.html) from the Huntington's Disease
      Outreach Project for Education at Stanford
    • Central Locus Specific Variation Database at the Institute of Genomics and Integrative Biology (http://miracle.
      igib.res.in/variationcentral)
    • The mutations chapter of the WikiBooks General Biology textbook (http://en.wikibooks.org/wiki/
      General_Biology/Genetics/Mutation#Mutation)
    • Examples of Beneficial Mutations (http://www.gate.net/~rwms/EvoMutations.html)
    • Correcting mutation by gene therapy (http://www.genetherapynet.com)
    • BBC Radio 4 In Our Time - GENETIC MUTATION - with [[Steve Jones (biologist)|Steve Jones (http://www.
      bbc.co.uk/radio4/history/inourtime/rams/inourtime_20071206.ram)]] - streaming audio
Natural selection                                                                                                                         246
     Natural selection
     Natural selection is the process by which traits become more or less common in a population due to consistent
     effects upon the survival or reproduction of their bearers. It is a key mechanism of evolution.
     The natural genetic variation within a population of organisms may cause some individuals to survive and reproduce
     more successfully than others in their current environment. For example, the peppered moth exists in both light and
     dark colors in the United Kingdom, but during the industrial revolution many of the trees on which the moths rested
     became blackened by soot, giving the dark-colored moths an advantage in hiding from predators. This gave
     dark-colored moths a better chance of surviving to produce dark-colored offspring, and in just a few generations the
     majority of the moths were dark. Factors which affect reproductive success are also important, an issue which
     Charles Darwin developed in his ideas on sexual selection.
     Natural selection acts on the phenotype, or the observable characteristics of an organism, but the genetic (heritable)
     basis of any phenotype which gives a reproductive advantage will become more common in a population (see allele
     frequency). Over time, this process can result in adaptations that specialize populations for particular ecological
     niches and may eventually result in the emergence of new species. In other words, natural selection is an important
     process (though not the only process) by which evolution takes place within a population of organisms. As opposed
     to artificial selection, in which humans favor specific traits, in natural selection the environment acts as a sieve
     through which only certain variations can pass.
     Natural selection is one of the cornerstones of modern biology. The term was introduced by Darwin in his influential
     1859 book On the Origin of Species,[1] in which natural selection was described as analogous to artificial selection, a
     process by which animals and plants with traits considered desirable by human breeders are systematically favored
     for reproduction. The concept of natural selection was originally developed in the absence of a valid theory of
     heredity; at the time of Darwin's writing, nothing was known of modern genetics. The union of traditional Darwinian
     evolution with subsequent discoveries in classical and molecular genetics is termed the modern evolutionary
     synthesis. Natural selection remains the primary explanation for adaptive evolution.
     General principles
     Natural variation occurs among the individuals of any population of
     organisms. Many of these differences do not affect survival (such as
     differences in eye color in humans), but some differences may improve
     the chances of survival of a particular individual. A rabbit that runs
     faster than others may be more likely to escape from predators, and
     algae that are more efficient at extracting energy from sunlight will
     grow faster. Individuals that have better odds for survival also have
     better odds for reproduction.
     The concept of natural selection predates the understanding of genetics, which is the study of heredity. In modern
     times, it is understood that selection acts on an organism's phenotype, or observable characteristics, but it is the
     organism's genetic make-up or genotype that is inherited. The phenotype is the result of the genotype and the
     environment in which the organism lives (see Genotype-phenotype distinction).
     This is the link between natural selection and genetics, as described in the modern evolutionary synthesis. Although
     a complete theory of evolution also requires an account of how genetic variation arises in the first place (such as by
     mutation and sexual reproduction) and includes other evolutionary mechanisms (such as gene flow), natural selection
     is still understood as a fundamental mechanism for evolution.
     Fitness
     The concept of fitness is central to natural selection. Broadly, individuals which are more "fit" have better potential
     for survival, as in the well-known phrase "survival of the fittest". However, as with natural selection above, the
     precise meaning of the term is much more subtle, and Richard Dawkins manages in his later books to avoid it
     entirely. (He devotes a chapter of his book, The Extended Phenotype, to discussing the various senses in which the
     term is used). Modern evolutionary theory defines fitness not by how long an organism lives, but by how successful
     it is at reproducing. If an organism lives half as long as others of its species, but has twice as many offspring
     surviving to adulthood, its genes will become more common in the adult population of the next generation.
     Though natural selection acts on individuals, the effects of chance mean that fitness can only really be defined "on
     average" for the individuals within a population. The fitness of a particular genotype corresponds to the average
     effect on all individuals with that genotype. Very low-fitness genotypes cause their bearers to have few or no
     offspring on average; examples include many human genetic disorders like cystic fibrosis.
     Since fitness is an averaged quantity, it is also possible that a favorable mutation arises in an individual that does not
     survive to adulthood for unrelated reasons. Fitness also depends crucially upon the environment. Conditions like
     sickle-cell anemia may have low fitness in the general human population, but because the sickle-cell trait confers
     immunity from malaria, it has high fitness value in populations which have high malaria infection rates.
Natural selection                                                                                                                        248
     Types of selection
     Natural selection can act on any phenotypic trait, and selective pressure can be produced by any aspect of the
     environment, including sexual selection and competition with members of the same species. However, this does not
     imply that natural selection is always directional and results in adaptive evolution; natural selection often results in
     the maintenance of the status quo by eliminating less fit variants.
     The unit of selection can be the individual or it can be another level within the hierarchy of biological organisation,
     such as genes, cells, and kin groups. There is still debate about whether natural selection acts at the level of groups or
     species to produce adaptations that benefit a larger, non-kin group. Selection at a different level such as the gene can
     result in an increase in fitness for that gene, while at the same time reducing the fitness of the individuals carrying
     that gene, in a process called intragenomic conflict. Overall, the combined effect of all selection pressures at various
     levels determines the overall fitness of an individual, and hence the outcome of natural selection.
     Natural selection occurs at every life stage of an individual. An
     individual organism must survive until adulthood before it can
     reproduce, and selection of those that reach this stage is called viability
     selection. In many species, adults must compete with each other for
     mates via sexual selection, and success in this competition determines
     who will parent the next generation. When individuals can reproduce
     more than once, a longer survival in the reproductive phase increases
     the number of offspring, called survival selection.
     The fecundity of both females and males (for example, giant sperm in
     certain species of Drosophila)[7] can be limited via "fecundity
     selection". The viability of produced gametes can differ, while                    The life cycle of a sexually reproducing
                                                                                       organism. Various components of natural
     intragenomic conflicts such as meiotic drive between the haploid                                                              [6]
                                                                                      selection are indicated for each life stage.
     gametes can result in gametic or "genic selection". Finally, the union of
     some combinations of eggs and sperm might be more compatible than
     others; this is termed compatibility selection.
     Sexual selection
     It is useful to distinguish between "ecological selection" and "sexual selection". Ecological selection covers any
     mechanism of selection as a result of the environment (including relatives, e.g. kin selection, competition, and
     infanticide), while "sexual selection" refers specifically to competition for mates.[8]
     Sexual selection can be intrasexual, as in cases of competition among individuals of the same sex in a population, or
     intersexual, as in cases where one sex controls reproductive access by choosing among a population of available
     mates. Most commonly, intrasexual selection involves male–male competition and intersexual selection involves
     female choice of suitable males, due to the generally greater investment of resources for a female than a male in a
     single offspring. However, some species exhibit sex-role reversed behavior in which it is males that are most
     selective in mate choice; the best-known examples of this pattern occur in some fishes of the family Syngnathidae,
     though likely examples have also been found in amphibian and bird species.[9]
     Some features that are confined to one sex only of a particular species can be explained by selection exercised by the
     other sex in the choice of a mate, for example, the extravagant plumage of some male birds. Similarly, aggression
     between members of the same sex is sometimes associated with very distinctive features, such as the antlers of stags,
     which are used in combat with other stags. More generally, intrasexual selection is often associated with sexual
     dimorphism, including differences in body size between males and females of a species.[10]
Natural selection                                                                                                                     249
     These surviving bacteria will then reproduce again, producing the next
     generation. Due to the elimination of the maladapted individuals in the past
     generation, this population contains more bacteria that have some resistance
     against the antibiotic. At the same time, new mutations occur, contributing new
     genetic variation to the existing genetic variation. Spontaneous mutations are
     very rare, and advantageous mutations are even rarer. However, populations of
     bacteria are large enough that a few individuals will have beneficial mutations. If     Resistance to antibiotics is increased
                                                                                               though the survival of individuals
     a new mutation reduces their susceptibility to an antibiotic, these individuals are
                                                                                              which are immune to the effects of
     more likely to survive when next confronted with that antibiotic.                        the antibiotic, whose offspring then
     Given enough time, and repeated exposure to the antibiotic, a population of             inherit the resistance, creating a new
                                                                                                population of resistant bacteria.
     antibiotic-resistant bacteria will emerge. This new changed population of
     antibiotic-resistant bacteria is optimally adapted to the context it evolved in. At
     the same time, it is not necessarily optimally adapted any more to the old antibiotic free environment. The end result
     of natural selection is two populations that are both optimally adapted to their specific environment, while both
     perform substandard in the other environment.
     The widespread use and misuse of antibiotics has resulted in increased microbial resistance to antibiotics in clinical
     use, to the point that the methicillin-resistant Staphylococcus aureus (MRSA) has been described as a "superbug"
     because of the threat it poses to health and its relative invulnerability to existing drugs.[11] Response strategies
     typically include the use of different, stronger antibiotics; however, new strains of MRSA have recently emerged that
     are resistant even to these drugs.[12]
     This is an example of what is known as an evolutionary arms race, in which bacteria continue to develop strains that
     are less susceptible to antibiotics, while medical researchers continue to develop new antibiotics that can kill them. A
     similar situation occurs with pesticide resistance in plants and insects. Arms races are not necessarily induced by
     man; a well-documented example involves the spread of a gene in the butterfly Hypolimnas bolina suppressing
     male-killing activity by Wolbachia bacteria parasites on the island of Samoa, where the spread of the gene is known
     to have occurred over a period of just five years [13]
     rates and average fitness effects of mutations are dependent on the organism, estimates from data in humans have
     found that a majority of mutations are slightly deleterious.[16]
                                                           By the definition of fitness, individuals with greater fitness are more
                                                           likely to contribute offspring to the next generation, while individuals
                                                           with lesser fitness are more likely to die early or fail to reproduce. As a
                                                           result, alleles which on average result in greater fitness become more
                                                           abundant in the next generation, while alleles which generally reduce
                                                           fitness become rarer. If the selection forces remain the same for many
                                                           generations, beneficial alleles become more and more abundant, until
                                                           they dominate the population, while alleles with a lesser fitness
                                                           disappear. In every generation, new mutations and re-combinations
      The exuberant tail of the peacock is thought to be
                                                           arise spontaneously, producing a new spectrum of phenotypes.
        the result of sexual selection by females. This
      peacock is an albino; selection against albinos in   Therefore, each new generation will be enriched by the increasing
       nature is intense because they are easily spotted   abundance of alleles that contribute to those traits that were favored by
       by predators or are unsuccessful in competition     selection, enhancing these traits over successive generations.
                           for mates.
                                                    Some mutations occur in so-called regulatory genes. Changes in these
                                                    can have large effects on the phenotype of the individual because they
     regulate the function of many other genes. Most, but not all, mutations in regulatory genes result in non-viable
     zygotes. Examples of nonlethal regulatory mutations occur in HOX genes in humans, which can result in a cervical
     rib[17] or polydactyly, an increase in the number of fingers or toes.[18] When such mutations result in a higher fitness,
     natural selection will favor these phenotypes and the novel trait will spread in the population.
     Established traits are not immutable; traits that have high fitness in one
     environmental context may be much less fit if environmental conditions change.
     In the absence of natural selection to preserve such a trait, it will become more
     variable and deteriorate over time, possibly resulting in a vestigial manifestation
     of the trait, also called evolutionary baggage. In many circumstances, the
     apparently vestigial structure may retain a limited functionality, or may be
     co-opted for other advantageous traits in a phenomenon known as preadaptation.
     A famous example of a vestigial structure, the eye of the blind mole rat, is
     believed to retain function in photoperiod perception.[19]
     Genetic changes within groups result in increasing incompatibility between the genomes of the two subgroups, thus
     reducing gene flow between the groups. Gene flow will effectively cease when the distinctive mutations
     characterizing each subgroup become fixed. As few as two mutations can result in speciation: if each mutation has a
     neutral or positive effect on fitness when they occur separately, but a negative effect when they occur together, then
     fixation of these genes in the respective subgroups will lead to two reproductively isolated populations. According to
     the biological species concept, these will be two different species.
Historical development
     Pre-Darwinian theories
     Several ancient philosophers expressed the idea that nature produces a
     huge variety of creatures, apparently randomly, and that only those
     creatures survive that manage to provide for themselves and reproduce
     successfully; well-known examples include Empedocles[21] and his
     intellectual successor, Lucretius,[22] while related ideas were later
     refined by Aristotle.[23] The struggle for existence was later described
     by Al-Jahiz, who argued that environmental factors influence animals
     to develop new characteristics to ensure survival.[24] [25] [26] Abu
     Rayhan Biruni described the idea of artificial selection and argued that
     nature works in much the same way.[27] Similar ideas were later
     expressed by Nasir al-Din Tusi[28] and Ibn Khaldun.[29] [30] Such
     classical arguments were reintroduced in the 18th century by Pierre
     Louis Maupertuis[31] and others, including Charles Darwin's                  The modern theory of natural selection derives
     grandfather Erasmus Darwin. While these forerunners had an influence            from the work of Charles Darwin in the
     on Darwinism, they later had little influence on the trajectory of                        nineteenth century.
     Until the early 19th century, the prevailing view in Western societies was that differences between individuals of a
     species were uninteresting departures from their Platonic idealism (or typus) of created kinds. However, the theory
     of uniformitarianism in geology promoted the idea that simple, weak forces could act continuously over long periods
     of time to produce radical changes in the Earth's landscape. The success of this theory raised awareness of the vast
     scale of geological time and made plausible the idea that tiny, virtually imperceptible changes in successive
     generations could produce consequences on the scale of differences between species. Early 19th century
     evolutionists such as Jean Baptiste Lamarck suggested the inheritance of acquired characteristics as a mechanism for
     evolutionary change; adaptive traits acquired by an organism during its lifetime could be inherited by that organism's
     progeny, eventually causing transmutation of species.[32] This theory has come to be known as Lamarckism and was
     an influence on the anti-genetic ideas of the Stalinist Soviet biologist Trofim Lysenko.[33]
     Darwin's theory
     In 1859, Charles Darwin set out his theory of evolution by natural selection as an explanation for adaptation and
     speciation. He defined natural selection as the "principle by which each slight variation [of a trait], if useful, is
     preserved".[34] The concept was simple but powerful: individuals best adapted to their environments are more likely
     to survive and reproduce. As long as there is some variation between them, there will be an inevitable selection of
     individuals with the most advantageous variations. If the variations are inherited, then differential reproductive
     success will lead to a progressive evolution of particular populations of a species, and populations that evolve to be
     sufficiently different eventually become different species.[35]
Natural selection                                                                                                               252
     Darwin's ideas were inspired by the observations that he had made on the Beagle voyage, and by the work of a
     political economist, the Reverend Thomas Malthus, who in An Essay on the Principle of Population, noted that
     population (if unchecked) increases exponentially whereas the food supply grows only arithmetically; thus inevitable
     limitations of resources would have demographic implications, leading to a "struggle for existence".[36] When
     Darwin read Malthus in 1838 he was already primed by his work as a naturalist to appreciate the "struggle for
     existence" in nature and it struck him that as population outgrew resources, "favourable variations would tend to be
     preserved, and unfavourable ones to be destroyed. The result of this would be the formation of new species."[37]
     Here is Darwin's own summary of the idea, which can be found in the fourth chapter of the Origin:
           If during the long course of ages and under varying conditions of life, organic beings vary at all in the several
           parts of their organisation, and I think this cannot be disputed; if there be, owing to the high geometrical
           powers of increase of each species, at some age, season, or year, a severe struggle for life, and this certainly
           cannot be disputed; then, considering the infinite complexity of the relations of all organic beings to each other
           and to their conditions of existence, causing an infinite diversity in structure, constitution, and habits, to be
           advantageous to them, I think it would be a most extraordinary fact if no variation ever had occurred useful to
           each being's own welfare, in the same way as so many variations have occurred useful to man. But if
           variations useful to any organic being do occur, assuredly individuals thus characterised will have the best
           chance of being preserved in the struggle for life; and from the strong principle of inheritance they will tend to
           produce offspring similarly characterised. This principle of preservation, I have called, for the sake of brevity,
           Natural Selection.
     Once he had his theory "by which to work", Darwin was meticulous about gathering and refining evidence as his
     "prime hobby" before making his idea public. He was in the process of writing his "big book" to present his
     researches when the naturalist Alfred Russel Wallace independently conceived of the principle and described it in an
     essay he sent to Darwin to forward to Charles Lyell. Lyell and Joseph Dalton Hooker decided (without Wallace's
     knowledge) to present his essay together with unpublished writings which Darwin had sent to fellow naturalists, and
     On the Tendency of Species to form Varieties; and on the Perpetuation of Varieties and Species by Natural Means of
     Selection was read to the Linnean Society announcing co-discovery of the principle in July 1858.[38] Darwin
     published a detailed account of his evidence and conclusions in On the Origin of Species in 1859. In the 3rd edition
     of 1861 Darwin acknowledged that others — notably William Charles Wells in 1813, and Patrick Matthew in 1831
     — had proposed similar ideas, but had neither developed them nor presented them in notable scientific
     publications.[39]
     Darwin thought of natural selection by analogy to how farmers select crops or livestock for breeding, which he
     called "artificial selection"; in his early manuscripts he referred to a 'Nature' which would do the selection. At the
     time, other mechanisms of evolution such as evolution by genetic drift were not yet explicitly formulated, and
     Darwin believed that selection was likely only part of the story: "I am convinced that [it] has been the main, but not
     exclusive means of modification."[40] In a letter to Charles Lyell in September 1860, Darwin regretted the use of the
     term "Natural Selection", preferring the term "Natural Preservation".[41] For Darwin and his contemporaries, natural
     selection was essentially synonymous with evolution by natural selection. After the publication of On the Origin of
     Species, educated people generally accepted that evolution had occurred in some form. However, natural selection
     remained controversial as a mechanism, partly because it was perceived to be too weak to explain the range of
     observed characteristics of living organisms, and partly because even supporters of evolution balked at its
     "unguided" and non-progressive nature,[42] a response that has been characterized as the single most significant
     impediment to the idea's acceptance.[43] However, some thinkers enthusiastically embraced natural selection; after
     reading Darwin, Herbert Spencer introduced the term survival of the fittest, which became a popular summary of the
     theory.[44] The fifth edition of On the Origin of Species published in 1869 included Spencer's phrase as an alternative
     to natural selection, with credit given: "But the expression often used by Mr. Herbert Spencer, of the Survival of the
     Fittest, is more accurate, and is sometimes equally convenient."[45] Although the phrase is still often used by
Natural selection                                                                                                                 253
     non-biologists, modern biologists avoid it because it is tautological if "fittest" is read to mean "functionally superior"
     and is applied to individuals rather than considered as an averaged quantity over populations.[46]
     social utility...must be accomplished by some human institution, if mankind, in default of selective factors, is not to
     be ruined by domestication-induced degeneracy. The racial idea as the basis of our state has already accomplished
     much in this respect."[54] Others have developed ideas that human societies and culture evolve by mechanisms that
     are analogous to those that apply to evolution of species.[55]
     More recently, work among anthropologists and psychologists has led to the development of sociobiology and later
     evolutionary psychology, a field that attempts to explain features of human psychology in terms of adaptation to the
     ancestral environment. The most prominent such example, notably advanced in the early work of Noam Chomsky
     and later by Steven Pinker, is the hypothesis that the human brain is adapted to acquire the grammatical rules of
     natural language.[56] Other aspects of human behavior and social structures, from specific cultural norms such as
     incest avoidance to broader patterns such as gender roles, have been hypothesized to have similar origins as
     adaptations to the early environment in which modern humans evolved. By analogy to the action of natural selection
     on genes, the concept of memes – "units of cultural transmission", or culture's equivalents of genes undergoing
     selection and recombination – has arisen, first described in this form by Richard Dawkins[57] and subsequently
     expanded upon by philosophers such as Daniel Dennett as explanations for complex cultural activities, including
     human consciousness.[58] Extensions of the theory of natural selection to such a wide range of cultural phenomena
     have been distinctly controversial and are not widely accepted.[59]
     Some traits are governed by only a single gene, but most traits are influenced by the interactions of many genes. A
     variation in one of the many genes that contributes to a trait may have only a small effect on the phenotype; together,
     these genes can produce a continuum of possible phenotypic values.[64]
     Directionality of selection
     When some component of a trait is heritable, selection will alter the frequencies of the different alleles, or variants of
     the gene that produces the variants of the trait. Selection can be divided into three classes, on the basis of its effect on
     allele frequencies.[65]
     Directional selection occurs when a certain allele has a greater fitness than others, resulting in an increase of its
     frequency. This process can continue until the allele is fixed and the entire population shares the fitter phenotype. It
     is directional selection that is illustrated in the antibiotic resistance example above.
     Far more common is stabilizing selection (which is commonly confused with purifying selection[66] [67] ), which
     lowers the frequency of alleles that have a deleterious effect on the phenotype – that is, produce organisms of lower
     fitness. This process can continue until the allele is eliminated from the population. Purifying selection results in
     functional genetic features, such as protein-coding genes or regulatory sequences, being conserved over time due to
     selective pressure against deleterious variants.
     Finally, a number of forms of balancing selection exist, which do not result in fixation, but maintain an allele at
     intermediate frequencies in a population. This can occur in diploid species (that is, those that have two pairs of
     chromosomes) when heterozygote individuals, who have different alleles on each chromosome at a single genetic
     locus, have a higher fitness than homozygote individuals that have two of the same alleles. This is called
     heterozygote advantage or overdominance, of which the best-known example is the malarial resistance observed in
     heterozygous humans who carry only one copy of the gene for sickle cell anemia. Maintenance of allelic variation
     can also occur through disruptive or diversifying selection, which favors genotypes that depart from the average in
     either direction (that is, the opposite of overdominance), and can result in a bimodal distribution of trait values.
     Finally, balancing selection can occur through frequency-dependent selection, where the fitness of one particular
     phenotype depends on the distribution of other phenotypes in the population. The principles of game theory have
     been applied to understand the fitness distributions in these situations, particularly in the study of kin selection and
     the evolution of reciprocal altruism.[68] [69]
     Genetic linkage
     Genetic linkage occurs when the loci of two alleles are linked, or in close proximity to each other on the
     chromosome. During the formation of gametes, recombination of the genetic material results in reshuffling of the
     alleles. However, the chance that such a reshuffle occurs between two alleles depends on the distance between those
     alleles; the closer the alleles are to each other, the less likely it is that such a reshuffle will occur. Consequently,
     when selection targets one allele, this automatically results in selection of the other allele as well; through this
     mechanism, selection can have a strong influence on patterns of variation in the genome.
     Selective sweeps occur when an allele becomes more common in a population as a result of positive selection. As
     the prevalence of one allele increases, linked alleles can also become more common, whether they are neutral or
     even slightly deleterious. This is called genetic hitchhiking. A strong selective sweep results in a region of the
     genome where the positively selected haplotype (the allele and its neighbours) are essentially the only ones that exist
     in the population.
     Whether a selective sweep has occurred or not can be investigated by measuring linkage disequilibrium, or whether a
     given haplotype is overrepresented in the population. Normally, genetic recombination results in a reshuffling of the
     different alleles within a haplotype, and none of the haplotypes will dominate the population. However, during a
     selective sweep, selection for a specific allele will also result in selection of neighbouring alleles. Therefore, the
     presence of a block of strong linkage disequilibrium might indicate that there has been a 'recent' selective sweep near
     the center of the block, and this can be used to identify sites recently under selection.
     Background selection is the opposite of a selective sweep. If a specific site experiences strong and persistent
     purifying selection, linked variation will tend to be weeded out along with it, producing a region in the genome of
     low overall variability. Because background selection is a result of deleterious new mutations, which can occur
     randomly in any haplotype, it does not produce clear blocks of linkage disequilibrium, although with low
     recombination it can still lead to slightly negative linkage disequilibrium overall.[70]
     See also
     •   Artificial selection
     •   Co-evolution
     •   Evolvability
     •   Gene-centered view of evolution
     •   Negative selection
     •   Unit of selection
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     [49] Dobzhansky Th (1937) Genetics and the Origin of Species Columbia University Press, New York. (2nd ed., 1941; 3rd edn., 1951)
     [50] Mayr E (1942) Systematics and the Origin of Species Columbia University Press, New York. ISBN 0-674-86250-3
     [51] The New York Review of Books: Darwinian Fundamentalism (http:/ / www. nybooks. com/ articles/ 1151) (accessed May 6, 2006)
     [52] http:/ / www. scitopics. com/ Cellular_Darwinism_stochastic_gene_expression_in_cell_differentiation_and_embryo_development. html
     [53] Engels F (1873-86) Dialectics of Nature 3d ed. Moscow: Progress, 1964 (http:/ / www. marxists. org/ archive/ marx/ works/ 1883/ don/
         index. htm)
     [54] Quoted in translation in Eisenberg L (2005) Which image for Lorenz? Am J Psychiatry 162:1760 (http:/ / ajp. psychiatryonline. org/ cgi/
         content/ full/ 162/ 9/ 1760)
     [55] e.g. Wilson, DS (2002) Darwin's Cathedral: Evolution, Religion, and the Nature of Society. University of Chicago Press, ISBN
         0-226-90134-3
     [56] Pinker S. [1994] (1995). The Language Instinct: How the Mind Creates Language. HarperCollins: New York, NY, USA. ISBN
         0-06-097651-9
     [57] Dawkins R. [1976] (1989). The Selfish Gene. Oxford University Press: New York, NY, USA, p.192. ISBN 0-19-286092-5
     [58] Dennett DC. (1991). Consciousness Explained. Little, Brown, and Co: New York, NY, USA. ISBN 0-316-18066-1
     [59] For example, see Rose H, Rose SPR, Jencks C. (2000). Alas, Poor Darwin: Arguments Against Evolutionary Psychology. Harmony Books.
         ISBN 0-609-60513-5
     [60] Lotka AJ (1922a) Contribution to the energetics of evolution (http:/ / www. pubmedcentral. nih. gov/ picrender. fcgi?artid=1085052&
         blobtype=pdf) [PDF] Proc Natl Acad Sci USA 8:147–51
         Lotka AJ (1922b) Natural selection as a physical principle (http:/ / www. pubmedcentral. nih. gov/ picrender. fcgi?artid=1085053&
         blobtype=pdf) [PDF] Proc Natl Acad Sci USA 8:151–4
     [61] Kauffman SA (1993) The Origin of order. Self-organization and selection in evolution. New York: Oxford University Press ISBN
         0-19-507951-5
     [62] Goldberg DE. (1989). Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley: Boston, MA, USA
     [63] Mitchell, Melanie, (1996), An Introduction to Genetic Algorithms, MIT Press, Cambridge, MA.
     [64] Falconer DS & Mackay TFC (1996) Introduction to Quantitative Genetics Addison Wesley Longman, Harlow, Essex, UK ISBN
         0-582-24302-5
     [65] Rice SH. (2004). Evolutionary Theory: Mathematical and Conceptual Foundations. Sinauer Associates: Sunderland, Massachusetts, USA.
         ISBN 0-87893-702-1 See esp. ch. 5 and 6 for a quantitative treatment.
     [66] Lemey, Philippe; Marco Salemi, Anne-Mieke Vandamme (2009). The Phylogenetic Handbook. Cambridge University Press.
         ISBN 978-0-521-73071.
     [67] http:/ / www. nature. com/ scitable/ topicpage/ Negative-Selection-1136
     [68] Hamilton WD. (1964). The genetical evolution of social behaviour I and II. Journal of Theoretical Biology 7: 1-16 and 17-52. PMID
         5875341 PMID 5875340
     [69] Trivers RL. (1971). The evolution of reciprocal altruism. Q Rev Biol 46: 35-57.
     [70] Keightley PD. and Otto SP (2006). "Interference among deleterious mutations favours sex and recombination in finite populations". Nature
         443 (7107): 89–92. doi:10.1038/nature05049. PMID 16957730.
Natural selection                                                                                                         259
     Further reading
     • For technical audiences
        • Gould, Stephen Jay (2002). The Structure of Evolutionary Theory. Harvard University Press.
          ISBN 0-674-00613-5.
        • Maynard Smith, John (1993). The Theory of Evolution: Canto Edition. Cambridge University Press.
          ISBN 0-521-45128-0.
        • Popper, Karl (1978) Natural selection and the emergence of mind. Dialectica 32:339-55. See (http://
          mertsahinoglu.com/research/karl-popper-on-the-scientific-status-of-darwins-theory-of-evolution/)
        • Sober, Elliott (1984) The Nature of Selection: Evolutionary Theory in Philosophical Focus. University of
          Chicago Press.
        • Williams, George C. (1966) Adaptation and Natural Selection: A Critique of Some Current Evolutionary
          Thought. Oxford University Press.
        • Williams George C. (1992) Natural Selection: Domains, Levels and Challenges. Oxford University Press.
     • For general audiences
        • Dawkins, Richard (1996) Climbing Mount Improbable. Penguin Books, ISBN 0-670-85018-7.
        • Dennett, Daniel (1995) Darwin's Dangerous Idea: Evolution and the Meanings of Life. Simon & Schuster
          ISBN 0-684-82471-X.
        • Gould, Stephen Jay (1997) Ever Since Darwin: Reflections in Natural History. Norton, ISBN 0-393-06425-5.
        • Jones, Steve (2001) Darwin's Ghost: The Origin of Species Updated. Ballantine Books ISBN 0-345-42277-5.
          Also published in Britain under the title Almost like a whale: the origin of species updated. Doubleday. ISBN
          1-86230-025-9.
        • Lewontin, Richard (1978) Adaptation. Scientific American 239:212-30
        • Weiner, Jonathan (1994) The Beak of the Finch: A Story of Evolution in Our Time. Vintage Books, ISBN
          0-679-73337-X.
     • Historical
        • Zirkle C (1941). Natural Selection before the "Origin of Species", Proceedings of the American Philosophical
          Society 84 (1), p. 71-123.
        • Kohm M (2004) A Reason for Everything: Natural Selection and the English Imagination. London: Faber and
          Faber. ISBN 0-571-22392-3. For review, see (http://human-nature.com/nibbs/05/wyhe.html) van Wyhe J
          (2005) Human Nature Review 5:1-4
     External links
     • On the Origin of Species by Charles Darwin (http://www.literature.org/authors/darwin-charles/
       the-origin-of-species/chapter-04.html) – Chapter 4,Natural Selection
     • Natural Selection (http://www.wcer.wisc.edu/ncisla/muse/naturalselection/index.html)- Modeling for
       Understanding in Science Education, University of Wisconsin
     • Natural Selection (http://evolution.berkeley.edu/evolibrary/search/topicbrowse2.php?topic_id=53) from
       University of Berkeley education website
     • T. Ryan Gregory: Understanding Natural Selection: Essential Concepts and Common Misconceptions (http://
       www.springerlink.com/content/2331741806807x22/fulltext.html) Evolution: Education and Outreach
Speciation                                                                                                                       260
    Speciation
    Speciation is the evolutionary process by which new biological species arise. The biologist Orator F. Cook seems to
    have been the first to coin the term 'speciation' for the splitting of lineages or 'cladogenesis,' as opposed to
    'anagenesis' or 'phyletic evolution' occurring within lineages.[1] [2] Whether genetic drift is a minor or major
    contributor to speciation is the subject of much ongoing discussion. There are four geographic modes of speciation in
    nature, based on the extent to which speciating populations are geographically isolated from one another: allopatric,
    peripatric, parapatric, and sympatric. Speciation may also be induced artificially, through animal husbandry or
    laboratory experiments. Observed examples of each kind of speciation are provided throughout.[3]
    Natural speciation
    All forms of natural speciation have taken place over the course of evolution; however it still remains a subject of
    debate as to the relative importance of each mechanism in driving biodiversity.[4]
                                                     One example of natural speciation is the diversity of the three-spined
                                                     stickleback, a marine fish that, after the last ice age, has undergone
                                                     speciation into new freshwater colonies in isolated lakes and streams.
                                                     Over an estimated 10,000 generations, the sticklebacks show structural
                                                     differences that are greater than those seen between different genera of
                                                     fish including variations in fins, changes in the number or size of their
                                                     bony plates, variable jaw structure, and color differences.[5]
    Allopatric
    During allopatric (from the ancient Greek
    allos, "other" + Greek patrā, "fatherland")
    speciation, a population splits into two
    geographically isolated populations (for
    example, by habitat fragmentation due to
    geographical change such as mountain
    building or social change such as
    emigration). The isolated populations then
    undergo genotypic and/or phenotypic
    divergence as: (a) they become subjected to
    dissimilar selective pressures; (b) they
    independently undergo genetic drift; (c)
    different mutations arise in the two
    populations. When the populations come
    back into contact, they have evolved such
    that they are reproductively isolated and are
    no longer capable of exchanging genes.
                                                          Comparison of allopatric, peripatric, parapatric and sympatric speciation.
    Observed instances
    Island genetics, the tendency of small, isolated genetic pools to produce unusual traits, has been observed in many
    circumstances, including insular dwarfism and the radical changes among certain famous island chains, for example
    on Komodo. The Galápagos islands are particularly famous for their influence on Charles Darwin. During his five
    weeks there he heard that Galápagos tortoises could be identified by island, and noticed that Mockingbirds differed
    from one island to another, but it was only nine months later that he reflected that such facts could show that species
    were changeable. When he returned to England, his speculation on evolution deepened after experts informed him
    that these were separate species, not just varieties, and famously that other differing Galápagos birds were all species
    of finches. Though the finches were less important for Darwin, more recent research has shown the birds now known
    as Darwin's finches to be a classic case of adaptive evolutionary radiation.[6]
    Peripatric
    In peripatric speciation, a subform of allopatric speciation, new species are formed in isolated, smaller peripheral
    populations that are prevented from exchanging genes with the main population. It is related to the concept of a
    founder effect, since small populations often undergo bottlenecks. Genetic drift is often proposed to play a
    significant role in peripatric speciation.
    Observed instances
    • Mayr bird fauna
    • The Australian bird Petroica multicolor
    • Reproductive isolation occurs in populations of Drosophila subject to population bottlenecking
    The London Underground mosquito is a variant of the mosquito Culex pipiens that entered in the London
    Underground in the nineteenth century. Evidence for its speciation include genetic divergence, behavioral
    differences, and difficulty in mating.[7]
Speciation                                                                                                                     262
    Parapatric
    In parapatric speciation, there is only partial separation of the zones of two diverging populations afforded by
    geography; individuals of each species may come in contact or cross habitats from time to time, but reduced fitness
    of the heterozygote leads to selection for behaviours or mechanisms that prevent their inter-breeding. Parapatric
    speciation is modelled on continuous variation within a 'single', connected habitat acting as a source of natural
    selection rather than the effects of isolation of habitats produced in peripatric and allopatric speciation.
    Ecologists refer to parapatric and peripatric speciation in terms of ecological niches. A niche must be available in
    order for a new species to be successful.
    Observed instances
    • Ring species
      • The Larus gulls form a ring species around the North Pole.
      • The Ensatina salamanders, which form a ring round the Central Valley in California.
      • The Greenish Warbler (Phylloscopus trochiloides), around the Himalayas.
    • the grass Anthoxanthum has been known to undergo parapatric speciation in such cases as mine contamination of
      an area.
    Sympatric
    Sympatric speciation refers to the formation of two or more descendant species from a single ancestral species all
    occupying the same geographic location.
    In sympatric speciation, species diverge while inhabiting the same place. Often-cited examples of sympatric
    speciation are found in insects that become dependent on different host plants in the same area.[8] [9] However, the
    existence of sympatric speciation as a mechanism of speciation is still hotly contested. People have argued that the
    evidences of sympatric speciation are in fact examples of micro-allopatric, or heteropatric speciation. The most
    widely accepted example of sympatric speciation is that of the cichlids of Lake Nabugabo in East Africa, which is
    thought to be due to sexual selection.
    Until recently, there has a been a dearth of hard evidence that supports this form of speciation, with a general feeling
    that interbreeding would soon eliminate any genetic differences that might appear. But there has been at least one
    recent study that suggests that sympatric speciation has occurred in Tennessee cave salamanders.[10]
    The three-spined sticklebacks, freshwater fishes, that have been studied by Dolph Schluter (who received his Ph.D.
    for his work on Darwin's finches with Peter J. Grant) and his current colleagues in British Columbia, were once
    thought to provide an intriguing example best explained by sympatric speciation. Schluter and colleagues found:
    • Two different species of three-spined sticklebacks in each of five different lakes
      • a large benthic species with a large mouth that feeds on large prey in the littoral zone
      • a smaller limnetic species — with a smaller mouth — that feeds on the small plankton in open water
    • DNA analysis indicates that each lake was colonized independently, presumably by a marine ancestor, after the
      last ice age
    • DNA analysis also shows that the two species in each lake are more closely related to each other than they are to
      any of the species in the other lakes
    • The two species in each lake are reproductively isolated; neither mates with the other.
    • However, aquarium tests showed:
       • the benthic species from one lake will spawn with the benthic species from the other lakes and
       • likewise the limnetic species from the different lakes will spawn with each other.
       • These benthic and limnetic species even display their mating preferences when presented with sticklebacks
         from Japanese lakes; that is, a Canadian benthic prefers a Japanese benthic over its close limnetic cousin from
Speciation                                                                                                                      263
    Hawthorn fly
    One example of evolution at work is the case of the hawthorn fly, Rhagoletis pomonella, also known as the apple
    maggot fly, which appears to be undergoing sympatric speciation.[13] Different populations of hawthorn fly feed on
    different fruits. A distinct population emerged in North America in the 19th century some time after apples, a
    non-native species, were introduced. This apple-feeding population normally feeds only on apples and not on the
    historically preferred fruit of hawthorns. The current hawthorn feeding population does not normally feed on apples.
    Some evidence, such as the fact that six out of thirteen allozyme loci are different, that hawthorn flies mature later in
    the season and take longer to mature than apple flies; and that there is little evidence of interbreeding (researchers
    have documented a 4-6% hybridization rate) suggests that sympatric speciation is occurring. The emergence of the
Speciation                                                                                                                            264
    Artificial speciation
    New species have been created by domesticated animal husbandry, but the initial dates and methods of the initiation
    of such species are not clear. For example, domestic sheep were created by hybridisation, and no longer produce
    viable offspring with Ovis orientalis, one species from which they are descended.[17] Domestic cattle, on the other
    hand, can be considered the same species as several varieties of wild ox, gaur, yak, etc., as they readily produce
    fertile offspring with them.[18]
    The best-documented creations of new species in the laboratory were performed in the late 1980s. William Rice and
    G.W. Salt bred fruit flies, Drosophila melanogaster, using a maze with three different choices of habitat such as
    light/dark and wet/dry. Each generation was placed into the maze, and the groups of flies that came out of two of the
    eight exits were set apart to breed with each other in their respective groups. After thirty-five generations, the two
    groups and their offspring were isolated reproductively because of their strong habitat preferences: they mated only
    within the areas they preferred, and so did not mate with flies that preferred the other areas.[19] The history of such
    attempts is described in Rice and Hostert (1993).[20]
    Diane Dodd was also able to show how reproductive isolation can develop from mating preferences in Drosophila
    pseudoobscura fruit flies after only eight generations using different food types, starch and maltose.[21]
Speciation                                                                                                                   265
Dodd's experiment has been easy for many others to replicate, including with other kinds of fruit flies and foods.[22]
    Genetics
    Few speciation genes have been found. They usually involve the reinforcement process of late stages of speciation.
    In 2008 a speciation gene causing reproductive isolation was reported.[23] It causes hybrid sterility between related
    subspecies.
    Hybrid speciation
    Hybridization between two different species sometimes leads to a distinct phenotype. This phenotype can also be
    fitter than the parental lineage and as such natural selection may then favor these individuals. Eventually, if
    reproductive isolation is achieved, it may lead to a separate species. However, reproductive isolation between
    hybrids and their parents is particularly difficult to achieve and thus hybrid speciation is considered an extremely
    rare event. The Mariana Mallard is known to have arisen from hybrid speciation.
    Hybridization without change in chromosome number is called homoploid hybrid speciation. It is considered very
    rare but has been shown in Heliconius butterflies [24] and sunflowers. Polyploid speciation, which involves changes
    in chromosome number, is a more common phenomenon, especially in plant species.
    Interspersed repeats
    Interspersed repetitive DNA sequences function as isolating mechanisms. These repeats protect newly evolving gene
    sequences from being overwritten by gene conversion, due to the creation of non-homologies between otherwise
    homologous DNA sequences. The non-homologies create barriers to gene conversion. This barrier allows nascent
    novel genes to evolve without being overwritten by the progenitors of these genes. This uncoupling allows the
    evolution of new genes, both within gene families and also allelic forms of a gene. The importance is that this allows
    the splitting of a gene pool without requiring physical isolation of the organisms harboring those gene sequences.
    Human speciation
    Humans have genetic similarities with chimpanzees and gorillas, suggesting common ancestors. Analysis of genetic
    drift and recombination using a Markov model suggests humans and chimpanzees speciated apart 4.1 million years
    ago.[28]
    See also
    • Extinction
    • Species problem
    • Heteropatry
    • Chronospecies
    • Koinophilia
    References
    [1]  Cook, O. F. 1906. Factors of species-formation. Science 23:506-507.
    [2]  Cook, O. F. 1908. Evolution without isolation. American Naturalist 42:727-731.
    [3]  Observed Instances of Speciation (http:/ / www. talkorigins. org/ faqs/ faq-speciation. html) by Joseph Boxhorn. Retrieved 8 June 2009.
    [4]  J.M. Baker (2005). "Adaptive speciation: The role of natural selection in mechanisms of geographic and non-geographic speciation". Studies
        in History and Philosophy of Biological and Biomedical Sciences 36 (2): 303–326. doi:10.1016/j.shpsc.2005.03.005. PMID 19260194.
    [5] Kingsley, D.M. (January 2009) "From Atoms to Traits," Scientific American, p. 57
    [6] Frank J. Sulloway (1982). "The Beagle collections of Darwin's finches (Geospizinae)". Bulletin of the British Museum (Natural History)
        Zoology Series 43 (2): 49–58. available online (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=A86& pageseq=2)
    [7] Katharine Byrne and Richard A Nichols (1999) "Culex pipiens in London Underground tunnels: differentiation between surface and
        subterranean populations" (http:/ / www. nature. com/ hdy/ journal/ v82/ n1/ full/ 6884120a. html)
    [8] Feder, J. L., X. Xie, J. Rull, S. Velez, A. Forbes, B. Leung, H. Dambroski, K. E. Filchak, and M. Aluja. 2005. Mayr, Dobzhansky, and Bush
        and the complexities of sympatric speciation in Rhagoletis. Proceedings of the National Academy of Sciences, USA 1902:6573-6580
    [9] Berlocher, S. H., and J. L. Feder. 2002. Sympatric speciation in phytophagous insects: moving beyond controversy? Annual Review of
        Entomology 47:773-815
    [10] MATTHEW L. NIEMILLER, BENJAMIN M. FITZPATRICK, BRIAN T. MILLER (2008). "Recent divergence with gene flow in
        Tennessee cave salamanders (Plethodontidae: Gyrinophilus) inferred from gene genealogies". Molecular Ecology 17 (9): 2258–2275.
        available online (http:/ / www. blackwell-synergy. com/ doi/ abs/ 10. 1111/ j. 1365-294X. 2008. 03750. x)
    [11] E.B. TAYLOR, J.D. McPHAIL (2000). "Historical contingency and determinism interact to prime speciation in sticklebacks" (http:/ / www.
        pubmedcentral. nih. gov/ articlerender. fcgi?tool=pmcentrez& artid=1690834). Proceedings of the Royal Society of London Series B 267
        (1460): 2375–2384. doi:10.1098/rspb.2000.1294. PMID 11133026. PMC 1690834. (http:/ / www. jstor. org/
        sici?sici=0962-8452(200012)267:1460<2375:HCAEDI>2. 0. CO;2-1& origin=ISI) available online
    [12] Ramsey, J., and D. W. Schemske. 1998. Pathways, mechanisms, and rates of polyploid formation in flowering plants. Annual Review of
        Ecology and Systematics 29:467-501
    [13] Feder JL, Roethele JB, Filchak K, Niedbalski J, Romero-Severson J (1 March 2003). "Evidence for inversion polymorphism related to
        sympatric host race formation in the apple maggot fly, Rhagoletis pomonella" (http:/ / www. genetics. org/ cgi/ pmidlookup?view=long&
        pmid=12663534). Genetics 163 (3): 939–53. PMID 12663534. PMC 1462491. .
    [14] Berlocher SH, Bush GL (1982). "An electrophoretic analysis of Rhagoletis (Diptera: Tephritidae) phylogeny" (http:/ / jstor. org/ stable/
        2413033). Systematic Zoology 31 (2): 136–55. doi:10.2307/2413033. .
    [15] Ridley, M. (2003) "Speciation — What is the role of reinforcement in speciation?" adapted from Evolution 3rd edition (Boston: Blackwell
        Science) tutorial online (http:/ / www. blackwellpublishing. com/ ridley/ tutorials/ Speciation15. asp)
Speciation                                                                                                                                               267
    [16] Ollerton, J. "Flowering time and the Wallace Effect" (http:/ / oldweb. northampton. ac. uk/ aps/ env/ lbrg/ journals/ papers/
        OllertonHeredityCommentary2005. pdf) (PDF). Heredity, August 2005. . Retrieved 2007-05-22.
    [17] Hiendleder S., et al. (2002) "Molecular analysis of wild and domestic sheep questions current nomenclature and provides evidence for
        domestication from two different subspecies" Proceedings of the Royal Society B: Biological Sciences 269:893-904
    [18] Nowak, R. (1999) Walker's Mammals of the World 6th ed. (Baltimore: Johns Hopkins University Press)
    [19] Rice, W.R. and G.W. Salt (1988). "Speciation via disruptive selection on habitat preference: experimental evidence". The American
        Naturalist 131: 911–917. doi:10.1086/284831.
    [20] W.R. Rice and E.E. Hostert (1993). "Laboratory experiments on speciation: What have we learned in forty years?" (http:/ / jstor. org/ stable/
        2410209). Evolution 47 (6): 1637–1653. doi:10.2307/2410209. .
    [21] Dodd, D.M.B. (1989) "Reproductive isolation as a consequence of adaptive divergence in Drosophila pseudoobscura." Evolution
        43:1308–1311.
    [22] Kirkpatrick, M. and V. Ravigné (2002) "Speciation by Natural and Sexual Selection: Models and Experiments" The American Naturalist
        159:S22–S35 DOI (http:/ / www. journals. uchicago. edu/ doi/ abs/ 10. 1086/ 338370)
    [23] http:/ / www. sciencemag. org/ cgi/ content/ short/ 323/ 5912/ 376
    [24] Mavarez, J.; Salazar, C.A., Bermingham, E., Salcedo, C., Jiggins, C.D. , Linares, M. (2006). "Speciation by hybridization in Heliconius
        butterflies". Nature 441 (7095): 868. doi:10.1038/nature04738. PMID 16778888.
    [25] University of Rochester Press Releases (http:/ / www. rochester. edu/ news/ show. php?id=2603)
    [26] Masly, John P., Corbin D. Jones, Mohamed A. F. Noor, John Locke, and H. Allen Orr (September 2006). "Gene Transposition as a Cause of
        Hybrid Sterility in Drosophila" (http:/ / www. sciencemag. org/ cgi/ content/ short/ 313/ 5792/ 1448). Science 313 (5792): 1448–1450.
        doi:10.1126/science.1128721. PMID 16960009. . Retrieved 2007-03-18.
    [27] Minkel, J.R. (September 8, 2006) "Wandering Fly Gene Supports New Model of Speciation" (http:/ / www. sciam. com/ article.
        cfm?chanID=sa003& articleID=000A84DB-CA3B-1501-8A3B83414B7F0000) Science News
    [28] Hobolth A, Christensen OF, Mailund T, Schierup MH (2007) "Genomic Relationships and Speciation Times of Human, Chimpanzee, and
        Gorilla Inferred from a Coalescent Hidden Markov Model." (http:/ / genetics. plosjournals. org/ perlserv/ ?request=get-document& doi=10.
        1371/ journal. pgen. 0030007) PLoS Genet 3(2): e7 (doi:10.1371/journal.pgen.0030007)
    Further reading
    • Coyne, J. A. & Orr, H. A. (2004). Speciation. Sunderlands, Massachusetts: Sinauer Associates, Inc.
      ISBN 0-87893-089-2.
    • Grant, V. (1981). Plant Speciation (2nd Edit. ed.). New York: Columbia University Press. ISBN 0-231-05113-1.
    • Mayr, E. (1963). Animal Species and Evolution. Harvard University Press. ISBN 0-674-03750-2
    • Marko, P. B. (2008). Allopatry. Oxford: Elsevier. ISBN 978-0-444-52033-3.
    • White, M. J. D. (1978). Modes of Speciation. San Francisco, California: W. H. Freeman and Company.
      ISBN 0-716-70284-3.
    • Dedicated issue of Philosophical Transactions B on Speciation in microorganisms is freely available. (http://
      publishing.royalsociety.org/microgenesis)
    External links
    • Observed Instances of Speciation (http://www.talkorigins.org/faqs/faq-speciation.html) from the Talk.Origins
      Frequently Asked Questions (http://www.talkorigins.org/origins/faqs-qa.html)
    • Speciation (http://evolution.berkeley.edu/evolibrary/article/0_0_0/evo_40), and
    • Evidence for Speciation (http://evolution.berkeley.edu/evolibrary/article/0_0_0/evo_45) from Understanding
      Evolution (http://evolution.berkeley.edu/evolibrary/home.php) by the University of California Museum of
      Paleontology
    • Speciation (http://johnhawks.net/weblog/topics/phylogeny/speciation.html) from John Hawks' Anthropology
      Weblog - paleoanthropology, genetics, and evolution (http://johnhawks.net/weblog/topics/phylogeny/)
    • Speciation in the context of evolution (http://evolution-of-man.info/speciation.htm)
                                                                                                                       268
Phylogenetics
Phylogenetics
In biology, phylogenetics is the study of evolutionary relatedness among various groups of organisms (for example,
species or populations), which is discovered through molecular sequencing data and morphological data matrices.
The term phylogenetics is of Greek origin from the terms phyle/phylon (φυλή/φῦλον), meaning "tribe, race," and
genetikos (γενετικός), meaning "relative to birth" from genesis (γένεσις, "birth"). Taxonomy, the classification,
identification, and naming of organisms, has been richly informed by phylogenetics but remains methodologically
and logically distinct.[1] The fields overlap however in the science of phylogenetic systematics – often called
"cladism" or "cladistics" – where only phylogenetic trees are used to delimit taxa, which represent groups of
lineage-connected individuals.[2] In biological systematics as a whole, phylogenetic analyses have become essential
in researching the evolutionary tree of life.
    Grouping of organisms
    There are some terms that describe the
    nature of a grouping in such trees. For
    instance, all birds and reptiles are believed
    to have descended from a single common
    ancestor, so this taxonomic grouping
    (yellow in the diagram below) is called
    monophyletic. "Modern reptile" (cyan in the
    diagram) is a grouping that contains a
    common ancestor, but does not contain all
    descendants of that ancestor (birds are
    excluded). This is an example of a
    paraphyletic group. A grouping such as
    warm-blooded animals would include only
    mammals and birds (red/orange in the
    diagram) and is called polyphyletic because
    the members of this grouping do not include
    the most recent common ancestor.                  Phylogenetic groups, or taxa, can be monophyletic, paraphyletic, or polyphyletic.
    Molecular phylogenetics
    The evolutionary connections between organisms are represented graphically through phylogenetic trees. Due to the
    fact that evolution takes place over long periods of time that cannot be observed directly, biologists must reconstruct
    phylogenies by inferring the evolutionary relationships among present-day organisms. Fossils can aid with the
    reconstruction of phylogenies; however, fossil records are often too poor to be of good help. Therefore, biologists
    tend to be restricted with analysing present-day organisms to identify their evolutionary relationships. Phylogenetic
    relationships in the past were reconstructed by looking at phenotypes, often anatomical characteristics. Today,
    molecular data, which includes protein and DNA sequences, are used to construct phylogenetic trees.[4] The overall
    goal of National Science Foundation's Assembling the Tree of Life activity (AToL) is to resolve evolutionary
    relationships for large groups of organisms throughout the history of life, with the research often involving large
    teams working across institutions and disciplines. Investigators are typically supported for projects in data
    acquisition, analysis, algorithm development and dissemination in computational phylogenetics and
    phyloinformatics. For example, RedToL aims at reconstructing the Red Algal Tree of Life.
Phylogenetics                                                                                                                 270
    from fossils into phylogenies where possible. Of course, phylogenetic data that include fossil taxa are generally
    based on morphology, rather than DNA data. Using simulations, Derrick Zwickl and David Hillis[10] found that
    increasing taxon sampling in phylogenetic inference has a positive effect on the accuracy of phylogenetic analyses.
    Another important factor that affects the accuracy of tree reconstruction is whether the data analyzed actually contain
    a useful phylogenetic signal, a term that is used generally to denote whether related organisms tend to resemble each
    other with respect to their genetic material or phenotypic traits.[11] Ultimately, however, there is no way to measure
    whether a particular phylogenetic hypothesis is accurate or not, unless the "true" relationships among the taxa being
    examined are already known. The best result an empirical systematist can hope to attain is a tree with branches
    well-supported by the available evidence.
    Role of fossils
    Because many morphological characters involve embryological or soft-tissue characters that cannot be fossilized,
    and the interpretation of fossils is more ambiguous than living taxa, it is sometimes difficult to incorporate fossil data
    into phylogenies. However, despite these limitations, the inclusion of fossils is invaluable, as they can provide
    information in sparse areas of trees, breaking up long branches and constraining intermediate character states; thus,
    fossil taxa contribute as much to tree resolution as modern taxa.[13]
    Homoplasy weighting
    Certain characters are more likely to be evolved convergently than others; logically, such characters should be given
    less weight in the reconstruction of a tree.[14] Unfortunately the only objective way to determine convergence is by
    the construction of a tree – a somewhat circular method. Even so, weighting homoplasious characters does indeed
    lead to better-supported trees.[14] Further refinement can be brought by weighting changes in one direction higher
    than changes in another; for instance, the presence of thoracic wings almost guarantees placement among the
    pterygote insects, although because wings are often lost secondarily, their absence does not exclude a taxon from the
    group.[15]
    See also
    •   Bauplan
    •   Bioinformatics
    •   Biomathematics
    •   Cladistics
    •   Coalescent theory
    •   Computational phylogenetics
    •   EDGE of Existence Programme
    •   Important publications in phylogenetics
    •   Language family
    • Maximum parsimony
    • Molecular phylogeny
    • PhyloCode
Phylogenetics                                                                                                                                         272
    •   Joe Felsenstein
    •   Systematics
    •   Phylogenetic tree
    •   Phylogenetic network
    •   Phylogenetic nomenclature
    •   Phylogenetics software
    •   Phylogenetic tree viewers
    •   Phylogeography
    •   Phylodynamics
    •   Phylogenetic comparative methods
    •   Microbial phylogenetics
    References
    [1] Edwards AWF, Cavalli-Sforza LL Phylogenetics is that branch of life science,which deals with the study of evolutionary relation among
        various groups of organisms,through molecular sequencing data. (1964). Systematics Assoc. Publ. No. 6: Phenetic and Phylogenetic
        Classification. ed. Reconstruction of evolutionary trees. pp. 67–76.
    [2] Speer, Vrian (1998). "UCMP Glossary: Phylogenetics" (http:/ / www. ucmp. berkeley. edu/ glossary/ glossary_1. html). UC Berkeley. .
        Retrieved 2008-03-22.
    [3] Cavalli-Sforza, L. L.; Edwards, A. W. F. (1967). "Phylogenetic Analysis: Models and Estimation Procedures" (http:/ / jstor. org/ stable/
        2406616). Evolution 21 (3): 550–570. doi:10.2307/2406616. .
    [4] Pierce, Benjamin A. (2007-12-17). Genetics: A conceptual Approach (3rd ed.). W. H. Freeman. ISBN 978-0716-77928-5.
    [5] Williamson DI (2003-12-31). "xviii". The Origins of Larvae (2nd ed.). Springer. pp. 261. ISBN 978-1402-01514-4.
    [6] Williamson DI (2006). "Hybridization in the evolution of animal form and life-cycle". Zoological Journal of the Linnean Society 148:
        585–602. doi:10.1111/j.1096-3642.2006.00236.x.
    [7] John Timmer, "Examining science on the fringes: vital, but generally wrong" (http:/ / arstechnica. com/ science/ news/ 2009/ 11/
        examining-science-on-the-fringes-vital-but-generally-wrong. ars), ARS Technica, 9 November 2009
    [8] Michael W. Hart, and Richard K. Grosberg, "Caterpillars did not evolve from onychophorans by hybridogenesis" (http:/ / www. pnas. org/
        content/ early/ 2009/ 10/ 22/ 0910229106), Proceedings of the National Academy of the Sciences, 30 October 2009 (doi:
        10.1073/pnas.0910229106)
    [9] Wiens J (2006). "Missing data and the design of phylogenetic analyses". Journal of Biomedical Informatics 39 (1): 34–42.
        doi:10.1016/j.jbi.2005.04.001. PMID 15922672.
    [10] Zwickl DJ, Hillis DM (2002). "Increased taxon sampling greatly reduces phylogenetic error". Systematic Biology 51 (4): 588–598.
        doi:10.1080/10635150290102339. PMID 12228001.
    [11] Blomberg SP, Garland T Jr, Ives AR (2003). "Testing for phylogenetic signal in comparative data: behavioral traits are more labile".
        Evolution 57 (4): 717–745. PMID 12778543. PDF (http:/ / www. biology. ucr. edu/ people/ faculty/ Garland/ BlomEA03. pdf)
    [12] Prevosti, F. J.; Chemisquy, M. �A. A. (2009). "The impact of missing data on real morphological phylogenies: influence of the number and
        distribution of missing entries". Cladistics 26: 326. doi:10.1111/j.1096-0031.2009.00289.x.
    [13] Cobbett, A.; Wilkinson, M.; Wills, M. (2007). "Fossils impact as hard as living taxa in parsimony analyses of morphology". Systematic
        biology 56 (5): 753–766. doi:10.1080/10635150701627296. PMID 17886145.
    [14] Goloboff, P. A.; Carpenter, J. M.; Arias, J. S.; Esquivel, D. R. M. (2008). "Weighting against homoplasy improves phylogenetic analysis of
        morphological data sets". Cladistics 24: 758. doi:10.1111/j.1096-0031.2008.00209.x.
    [15] Goloboff, P. A. (1997). "Self-Weighted Optimization: Tree Searches and Character State Reconstructions under Implied Transformation
        Costs". Cladistics 13: 225. doi:10.1111/j.1096-0031.1997.tb00317.x.
Phylogenetics                                                                                                        273
    Further reading
    • Schuh, R. T. and A. V. Z. Brower. 2009. Biological Systematics: principles and applications (2nd edn.) ISBN
      978-0-8014-4799-0
    External links
    •   The Tree of Life (http://tolweb.org/tree/learn/concepts/whatisphylogeny.html)
    •   Interactive Tree of Life (http://itol.embl.de)
    •   PhyloCode (http://www.ohiou.edu/phylocode/)
    •   ExploreTree (http://exploretree.org/)
    •   UCMP Exhibit Halls: Phylogeny Wing (http://www.ucmp.berkeley.edu/exhibit/phylogeny.html)
    •   Willi Hennig Society (http://www.cladistics.org)
    •   Filogenetica.org in Spanish (http://www.filogenetica.org)
    •   PhyloPat, Phylogenetic Patterns (http://www.cmbi.ru.nl/phylopat)
    •   SplitsTree (http://www.SplitsTree.org), program for computing phylogenetic trees and unrooted phylogenetic
        networks
    • Dendroscope (http://www.Dendroscope.org), program for drawing phylogenetic trees and rooted phylogenetic
      networks
    • Phylogenetic inferring on the T-REX server (http://www.trex.uqam.ca)
    • Mesquite (http://mesquiteproject.org/mesquite/mesquite.html)
    • Geneious Pro (http://www.geneious.com) all-in-one phylogenetics software
    • NCBI – Systematics and Molecular Phylogenetics (http://www.ncbi.nlm.nih.gov/About/primer/phylo.html)
    • What Genomes Can Tell Us About the Past (http://ascb.org/ibioseminars/brenner/brenner1.cfm) – lecture on
      phylogenetics by Sydney Brenner
    • Mikko's Phylogeny Archive (http://www.helsinki.fi/~mhaaramo/)
    • Phylogenetic Reconstruction from Gene-Order Data (http://www.cs.unm.edu/~moret/poincare.pdf)
Cladistics                                                                                                                      274
     Cladistics
     Cladistics[1] is a method of classifying species of organisms into groups called clades, which consist of 1) all the
     descendants of an ancestral organism and 2) the ancestor itself. For example, birds, dinosaurs, crocodiles, and all
     descendants (living or extinct) of their most recent common ancestor form a clade.[2] In the terms of biological
     systematics, a clade is a single "branch" on the "tree of life", a monophyletic group.
     Cladistics can be distinguished from other taxonomic systems, such as phenetics, by its focus on shared derived
     characters (synapomorphies). Previous systems usually employed overall morphological similarity to group species
     into genera, families and other higher level classification; cladistic classifications (usually trees called cladograms)
     are intended to reflect the relative recency of common ancestry or the sharing of homologous features. Cladistics is
     also distinguished by its emphasis on parsimony and hypothesis testing (particularly falsificationism), rather than
     subjective decisions that some other taxonomic systems rely upon.[3]
     Cladistics originated in the work of the German entomologist Willi Hennig, who referred to it as "phylogenetic
     systematics" (also the name of his 1966 book); the use of the terms "cladistics" and "clade" was popularized by other
     researchers. The technique and sometimes the name have been successfully applied in other disciplines: for example,
     to determine the relationships between the surviving manuscripts of the Canterbury Tales.[4]
     Cladists use cladograms, diagrams which show ancestral relations between species, to represent the monophyletic
     relationships of species, termed sister-group relationships. This is interpreted as representing phylogeny, or
     evolutionary relationships. Although traditionally such cladograms were generated largely on the basis of
     morphological characters, genetic sequencing data and computational phylogenetics are now very commonly used in
     the generation of cladograms.
     History of cladistics
     The term clade was introduced in 1958 by Julian Huxley, cladistic by Cain and Harrison in 1960, and cladist (for an
     adherent of Hennig's school) by Mayr in 1965.[5] Hennig referred to his own approach as phylogenetic systematics.
     From the time of his original formulation until the end of the 1980s cladistics remained a minority approach to
     classification. However in the 1990s it rapidly became the dominant method of classification in evolutionary
     biology. Computers made it possible to process large quantities of data about organisms and their characteristics. At
     about the same time the development of effective polymerase chain reaction techniques made it possible to apply
     cladistic methods of analysis to biochemical and molecular genetic features of organisms as well as to anatomical
     ones.[6]
Cladistics                                                                                                                           275
     Clades
     A clade is a group of taxa consisting of
     an ancestor taxon and all of its
     descendant taxa. In the diagram
     provided, it is hypothesized that the first
     vertebrate species is the common
     ancestor of all vertebrate species,
     including fishes (Pisces). The first
     tetrapod is the ancestor of all tetrapods,
     including amphibians, reptiles, mammals
     and birds. The tetrapod ancestor was a
     descendant of the original vertebrate
     ancestor, but is not an ancestor of any
     fish living today. The tetrapod clade is
     thus nested within the vertebrate clade.
     Terminology
     The following terms are used to identify shared or distinct characters among groups:[8] [9] [10]
     • Plesiomorphy ("close form") or ancestral state, also symplesiomorphy ("shared plesiomorphy"), is a characteristic
       that is present at the base of the tree. For example, in the tree shown, the presence of a backbone (shared by all
       vertebrates) can be hypothesized to have existed in the common vertebrate ancestor.
     • Apomorphy ("separate form") or derived state is a characteristic believed to have evolved within the tree. For
       example, all tetrapods have four limbs; thus, having four limbs is an apomorphy for vertebrates but a
       plesiomorphy for tetrapods.
     • Synapomorphy ("shared apomorphy") is an apomorphy which is shared between taxa.
     The application of the above terms to a group depends on one's perspective in the tree. They are thus relative terms.
     For example, an apomorphy of one clade is the plesiomorphy of another contained within it. These terms are
     equivalent to but more precise than the homology, allowing one to express the hierarchical relationships among
     different homologies.
     Three main types of groups can be identified by plotting their relationships in cladograms:[8] [9] [10]
     • Monophyletic groups are groups containing only taxa descended from a given ancestor taxon and all those
       descendants. In the diagram, all vertebrates are monophyletic, since all the taxa are descended from a single
Cladistics                                                                                                                     276
       ancestor (the common vertebrate species) and there are no others. Monophyly is diagnosed by the synapomorphy
       relation.
     • Paraphyletic groups are groups excluding one or more descendant taxa of the common ancestor, and thus contain
       some but not all of its descendants. For instance, excluding birds from the sample cladogram would create a
       paraphyletic group, reptiles. Paraphyletic groups are typically diagnosed on the basis of shared plesiomorphy and
       the exclusion of groups that are diagnosable by a synapomorphy. For example, birds are warm-blooded,
       excluding them from being reptiles, which because of that exclusion is a paraphyletic group, as birds are also
       descended from amniotes. The plesiomorphy is the amniotic fluid and the synapomorphy is warm-bloodedness.
     • Polyphyletic groups are groups containing taxa from two or more different monophyletic groups. For instance, a
       grouping of birds and mammals based on their warm-bloodedness is not monophyletic. In the diagram, the Aves
       ancestor came from the Archosaurs, but the Mammalian ancestor came from the Amniotes. Although there is an
       ultimate common ancestor among the Tetrapods, the latest common ancestors are not the same and therefore the
       group is polyphyletic. The warm-bloodedness is not a plesiomorphy but is a homoplasy, or convergence.
       Polyphyletic groups are recognized by the homoplasy relation (that is, a group is polyphyletic because it is
       diagnosed by a character that actually forms a homoplasy, see wastebasket taxon).
     Clades relate to each other in these ways:
     • A clade is basal to another clade if it contains that other clade as a subset within it. In this case, the vertebrate
       clade is basal to the tetrapod and fish clades. The use of "basal" to mean a clade that is less species-rich than a
       sister clade, with such a deficit being taken as an indication of primitiveness, is incorrectly applied.[11]
     • A clade located within a clade is said to be nested within that clade. The bird clade is nested within the reptilian
       clade.
     Cladograms
     Cladists use cladograms, diagrams which show ancestral relations between taxa, to represent the evolutionary tree of
     life. Although traditionally such cladograms were generated largely on the basis of morphological characters,
     molecular sequencing data and computational phylogenetics are now very commonly used in the generation of
     cladograms.
     The starting point of cladistic analysis is a group of species and molecular, morphological, or other data
     characterizing those species. The end result is a tree-like relationship diagram called a cladogram,[13] or sometimes a
     dendrogram (Greek for "tree drawing").[14] The cladogram graphically represents a hypothetical evolutionary
     process. Cladograms are subject to revision as additional data become available.
     The terms "evolutionary tree", and sometimes "phylogenetic tree" are often used synonymously with cladogram,[15]
     but others treat phylogenetic tree as a broader term that includes trees generated with a nonevolutionary emphasis. In
     cladograms, all species lie at the leaves. The two taxa on either side of a split, with a common ancestor and no
     additional descendents, are called "sister taxa" or "sister groups".[16] Each subtree, whether it contains only two or a
     hundred thousand items, is called a "clade". Many cladists require that all forks in a cladogram be 2-way forks. Some
     cladograms include 3-way or 4-way forks when there are insufficient data to resolve the forking to a higher level of
     detail (see under phylogenetic tree).
     For a given set of species, the number of distinct cladograms that can be drawn (ignoring which cladogram best
     matches the species characteristics) is:[17]
Number of species 2 3 4 5 6 7 8 9 10 N
     This superexponential growth of the number of possible cladograms explains why manual creation of cladograms
     becomes very difficult when the number of species is large. If a cladogram represents N species, the number of
     levels (the "depth") in the cladogram is on the order of log2(N).[18] For example, if there are 32 species of deer, a
     cladogram representing deer could be around 5 levels deep (because 25 = 32), although this is really just the lower
     limit. A cladogram representing the complete tree of life, with about 10 million species, could be about 23 levels
     deep. This formula gives a lower limit, with the actual depth generally a larger value, because the various branches
     of the cladogram will not be uniformly deep. Conversely, the depth may be shallower if forks larger than 2-way
     forks are permitted.
     A cladogram tree has an implicit time axis,[19] with time running forward from the base of the tree to the leaves of
     the tree. If the approximate date (for example, expressed as millions of years ago) of all the evolutionary forks were
     known, those dates could be captured in the cladogram. Thus, the time axis of the cladogram could be assigned a
     time scale (e.g. 1 cm = 1 million years), and the forks of the tree could be graphically located along the time axis.
     Such cladograms are called scaled cladograms. Many cladograms are not of this type, for a variety of reasons:
     • They are built from species characteristics that cannot be readily dated (e.g. morphological data in the absence of
       fossils or other dating information)
     • When the characteristic data are DNA/RNA sequences, it is feasible to use sequence differences to establish the
       relative ages of the forks, but converting those ages into actual years requires a significant approximation of the
       rate of change[20]
     • Even when the dating information is available, positioning the cladogram's forks along the time axis in proportion
       to their dates may cause the cladogram to become difficult to understand or hard to fit within a human-readable
       format
     Cladistics makes no distinction between extinct and extant species,[21] and it is appropriate to include extinct species
     in the group of organisms being analyzed. Cladograms that are based on DNA/RNA generally do not include extinct
     species because DNA/RNA samples from extinct species are rare. Cladograms based on morphology, especially
Cladistics                                                                                                                              278
morphological characteristics that are preserved in fossils, are more likely to include extinct species.
Cladistics in taxonomy
             "It would seem to me to be quite evident that the two concepts of phylogeny (and their role in the
             construction of classifications) are sufficiently different to require terminological distinction. The term
             phylogeny should be retained for the broad concept of phylogeny, promoted by Darwin and adopted by
             most students of phylogeny in the ensuing 90 years. The concept of phylogeny as mere genealogy
             should be terminologically distinguished as cladistics. To lump the two concepts together
             terminologically could not help but produce harmful equivocation."
     Willi Hennig's pioneering work provoked a spirited debate[24] about the relative merits of phylogenetic nomenclature
     versus Linnaean or evolutionary taxonomy, which has continued down to the present,[25] however Hennig did not
     advocate abandoning the Linnaean nomenclatural system. Some of the debates in which the cladists were engaged
     had been running since the 19th century, but they were renewed fervor,[26] as can be seen from the Foreword to
     Hennig (1979) by Rosen, Nelson, and Patterson:[27]
             "Encumbered with vague and slippery ideas about adaptation, fitness, biological species and natural
             selection, neo-Darwinism (summed up in the "evolutionary" systematics of Mayr and Simpson) not only
             lacked a definable investigatory method, but came to depend, both for evolutionary interpretation and
             classification, on consensus or authority."
     Phylogenetic nomenclature strictly and exclusively follows phylogeny and has arbitrarily deep trees with binary
     branching: each taxon corresponds to a clade. Linnaean taxonomy, while since the advent of evolutionary theory
     following phylogeny, also may subjectively consider similarity and has a fixed hierarchy of taxonomic ranks, and its
     taxa are not required to correspond to clades.
Cladistics                                                                                                                        279
     Example
     For example, Linnaean taxonomy contains the taxon Tetrapoda, defined morphologically as vertebrates with four
     limbs (as well as animals with four-limbed ancestors, such as snakes), which is often given the rank of superclass,
     and divides into the classes Amphibia, Reptilia, Aves, Mammalia.
     Phylogenetic nomenclature also contains the taxon Tetrapoda (see the diagram under Clades above), whose living
     members can be classified phylogenically as "the clade defined by the common ancestor of amphibians and
     mammals", or more precisely the clade defined by the common ancestor of a specific amphibian and mammal (or
     bird or snake). This definition gives us the Crown group tetrapods (or Crown-Tetrapoda). A few primitive four
     legged ancestors (the Ichthyostegalia) fall outside Crown-Tetrapoda.[33] An alternative is to define tetrapoda as all
     animals more closely related to mammals than to lungfish (our nearest living non-tetrapod relatives). In this
     definition, the ichthyostegalians are included, together with a host of fossil animals usually classed as
Cladistics                                                                                                                                                   280
     crossopterygian fish. This wider definition is termed Pan-Tetrapoda. A third option is to define Tetrapoda according
     to their apomorphy (their unique trait, i.e. having legs rather than fins), a definition that yield the same group as the
     Linnaean taxon.
     Non of the phylogenetic taxa as described above have a rank, and neither do its subtaxa. All the subclades are
     contained within one another. The clades are not divided into several non-overlapping taxa (as in traditional
     taxonomy), rather the clade is split into two clades at the first branching, a process repeated throughout. With regards
     to the traditional classes, Aves and Mammalia are subclades, contained in the subclade Amniota, while Reptilia and
     Amphibia are paraphyletic taxa, not clades.[34] Instead of classifying non-mammalian, non-avian amniotes as
     reptiles, Amniota is divided into the two clades Sauropsida (which contains birds and all living amniotes other than
     mammals, including all living traditional reptiles) and Theropsida (mammals and the extinct mammal-like reptiles).
     Similarly, Amphibia can be split into the Batrachomorpha (fossil amphibians more closely related to modern
     amphibians) and Reptiliomorpha, the latter of which the amiotes is a sub-clade.[35] Ichthyostegalians and other
     Stem-tetrapods represent sister groups from splits predating the Batrachomorpha/Reptilopmorpha split.[33]
    Handles arbitrarily deep trees.                   Often must invent new level names (such as superorder, suborder, infraorder, parvorder,
                                                      magnorder) to accommodate new discoveries. Biased towards trees about 4 to 12 levels deep.
    Discourages naming or use of groups that are      Acceptable to name and use paraphyletic groups
    not monophyletic
    Primary goal is to reflect actual process of      Primary goal is to group species based on morphological similarities
    evolution
    Assumes that the shape of the tree will change    New discoveries often require renaming or releveling of Classes, Orders, and Kingdoms
    frequently with new discoveries
    Does not include a process for naming species                                                                  Includes a process for giving unique
                                                                                                                   names to species
    Clade definitions emphasize ancestry at the expense of descriptive characteristics                             Taxa definitions based on tangible
                                                                                                                   characteristics
    Ignores sensible, clearly defined paraphyletic groups such as reptiles                                         Permits clearly defined groups such
                                                                                                                   as reptiles
    Difficult to determine if a given species is in a clade or not (e.g. if clade X is defined as "most recent     Straightforward process to determine
    common ancestor of A and B along with its descendants", then the only way to determine if species Y is in      if a given species is in a taxon or not
    the clade is to perform a complex evolutionary analysis)
    Limited to organisms that evolved by inherited traits; not applicable to organisms that evolved via complex    Applicable to all organisms,
    gene sharing or lateral transfer                                                                               regardless of evolutionary
                                                                                                                   mechanism
Cladistics                                                                                                                                               281
     See also
                  •   Bauplan                        •   Important publications in phylogenetics •     Phylogenomics
                  •   Bioinformatics                 •   Language family                           •   Phylogeography
                  •   Biomathematics                 •   Maximum parsimony                         •   Phylogenetic comparative methods
                  •   Coalescent theory              •   Molecular phylogeny                       •   Scientific Classification
                  •   Computational phylogenetics •      PhyloCode                                 •   Stratocladistics
                  •   Dendrogram                     •   Phylogenetics                             •   Systematics
                  •   Evolution of Mollusca          •   Phylogenetic network                      •   Tree structure
                  •   Last common ancestor           •   Phylogenetics software                    •   Three-taxon analysis
     References
     [1] (Ancient Greek: κλάδος, klados, "branch")
     [2] Glossary entry "clade" (http:/ / evolution. berkeley. edu/ evolibrary/ glossary/ glossary_popup. php?word=clade) Understanding Evolution.
         2010. University of California Museum of Paleontology.
     [3] Phillips, Ben (2000). "Natural History Collections: Cladistics" (http:/ / www. nhc. ed. ac. uk/ index. php?page=236. 273. 444). University of
         Edinburgh. . Retrieved 4 July 2009.
     [4] "Canterbury Tales Project" (http:/ / www. canterburytalesproject. org). . Retrieved 4 July 2009.
     [5] Dupuis 1984
     [6] Baron, C.; Høeg, J.T. (2005). "Gould, Scharm and the paleontologocal perspective in evolutionary biology" (http:/ / books. google. com/
         ?id=LalmQ4346O0C& dq=Nielsen,+ C. + 2001+ "Animal+ evolution"+ Chelicerata). In Koenemann, S.; Jenner, R.A.. Crustacea and
         Arthropod Relationships. CRC Press. pp. 3–14. ISBN 0849334985. . Retrieved 2008-10-15.
     [7] Mayr 1982, p. 221
     [8] Patterson 1982, pp. 21–74
     [9] Patterson, Colin (1988). "Homology in classical and molecular biology". Molecular Biology and Evolution 5 (6): 603–625. PMID 3065587.
     [10] de Pinna, M.G.G (1991). "Concepts and tests of homology in the cladistic paradigm". Cladistics 7: 367–394.
         doi:10.1111/j.1096-0031.1991.tb00045.x.
     [11] Krell, F.-T.; Cranston, P. (2004). "Which side of the tree is more basal?". Systematic Entomology 29 (3): 279–281.
         doi:10.1111/j.0307-6970.2004.00262.x.
     [12] de Queiroz, K.; Gauthier, J. (1994). "Toward a phylogenetic system of biological nomenclature". Trends in Research in Ecology and
         Evolution 9 (1): 27–31. doi:10.1016/0169-5347(94)90231-3.
     [13] Cracraft, Joel; Donaghue, Michael J., eds (2004). Assembling the Tree of Life. Oxford, England: Oxford University Press. pp. 45, 78, 555.
     [14] Weygoldt, P. (February 1998). "Evolution and systematics of the Chelicerata". Experimental and Applied Acarology 22 (2): 63–79.
         doi:10.1023/A:1006037525704.
     [15] Singh, Gurcharan (2004). Plant Systematics: An Integrated Approach. Science. pp. 203–4. ISBN 1578083516.
     [16] Gould, Steven Jay (1983). Hen's Teeth and Horse's Toes. New York: Norton. p. 357. ISBN 0393017168.
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Cladistics                                                                                                                                             282
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     [26] Hull, David (1988). Science as a Process. University of Chicago Press. pp. 232–276. ISBN 0226360512.
     [27] Hennig 1979, p. ix
     [28] Mishler 2005, p. 57
     [29] Gordon, Richard (1999). The Hierarchical Genome and Differentiation Waves. World Scientific. p. 664. ISBN 9810222688.
     [30] Mishler 2005, p. 62
     [31] Mishler 2005, p. 62: "In deep reconstruction problems, the branch events at issue happened a relatively long time ago and the ... relative
         lengths of ... branches are often quite different...."
     [32] Pennisi, E. (2001). "Evolutionary Biology: Preparing the Ground for a Modern 'Tree of Life'". Science 293 (5537): 1979–1980.
         doi:10.1126/science.293.5537.1979. PMID 11557858.
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         Evolutionary Research 40: 169–194. doi:10.1046/j.1439-0469.2002.00211.x.
     [39] Williams, P.A. (1992). "Confusion in cladism". Synthese 01: 135–132.
     [40] Mace, Ruth; Clare, Clare J.; Shennan, Stephen, eds (2005). The Evolution of Cultural Diversity: A Phylogenetic Approach. Cavendish
         Publishing. p. 1.
     [41] Lipo, Carl; O'Brien, Michael J.; Collard, Mark et al., eds (2006). Mapping Our Ancestors: Phylogenetic Approaches in Anthropology and
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     [42] Oppenheimer, Stephen (2006). The Origins of the British. London: Robinson. pp. 290–300, 340–56. ISBN 0786718900.
     [43] Ehrman, Bart D. (2005). The text of the New Testament: its tranmission, corruption and restoration (4th ed.). New York: Oxford University
         Press. p. 207 ff.
     [44] Robinson, Peter M.W.; O’Hara, Robert J. (1996). "Cladistic analysis of an Old Norse manuscript tradition" (http:/ / rjohara. net/ cv/
         1996-rhc). Research in Humanities Computing 4: 115–137. .
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         intelligence. Mahwah, NJ: Lawrence Erlbaum Associates, Inc.. p. 254. ISBN 0123852501.
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     • Ashlock, Peter D. (1971). "Monophyly and associated terms" (http://jstor.org/stable/2412223). Systematic
       Zoology 20 (1): 63–69. doi:10.2307/2412223.
     • Ashlock, Peter D. (1972). "Monophyly again" (http://jstor.org/stable/2412435). Systematic Zoology 21 (4):
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     • Ashlock, Peter D. (1974). "The uses of cladistics". Annual Review of Ecology and Systematics 5: 81–99.
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     • Ashlock, Peter D. (1979). "An evolutionary systematist’s view of classification" (http://jstor.org/stable/
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     • Cuénot, Lucien (1940). "Remarques sur un essai d'arbre généalogique du règne animal". Comptes Rendus de
       l'Académie des Sciences de Paris 210: 23–27. Available free online at http://gallica.bnf.fr (No direct URL).
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     • Dupuis, Claude (1984). "Willi Hennig's impact on taxonomic thought". Annual Review of Ecology and
       Systematics 15: 1–24. ISSN 0066-4162.
Cladistics                                                                                                                  283
     • Hennig, Willi (1975). "'Cladistic analysis or cladistic classification': a reply to Ernst Mayr" (http://jstor.org/
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       responding is reprinted in Mayr 1976.
     • Hennig, Willi (1966). Phylogenetic systematics (tr. D. Dwight Davis and Rainer Zangerl). Urbana, IL: Univ. of
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       response.
     • Mayr, Ernst (1978). "Origin and history of some terms in systematic and evolutionary biology" (http://jstor.org/
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       Harvard University Press. ISBN 0-674-36446-5.
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       edn.) Cornell University Press, ISBN 978-0-8014-4799-0
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       www.ucmp.berkeley.edu/clad/clad4.html). University of California Museum of Paleontology. Retrieved 21
       January 2010.
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       University of Washington. Retrieved 21 January 2010.
     • O'Neil, Dennis (1998-2008). "Classification of Living Things" (http://anthro.palomar.edu/animal/default.
       htm). San Marcos CA: Palomar College. Retrieved 21 January 2010.
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       darwin/files/bmcr). rjohara.net. Retrieved 21 January 2010.
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       html). The TalkOrigins Archive. Retrieved 21 January 2010.
     • Wiley, E.O.; Siegel-Causey, D.; Brooks, D.R.; Funk, V.A. (1991). "Chapter 1: Introduction, Terms and Concepts"
       (http://www.amnh.org/learn/pd/fish_2/pdf/compleat_cladist.pdf). The Compleat Cladist: A Primer of
       Phylogenetic Procedures. The University of Kansas Museum of Natural History Special Publication No. 19.
       American Museum of Natural History. ISBN 0893380350.
Cladogram                                                                                                                           284
    Cladogram
    A cladogram is a diagram used in cladistics which
    shows ancestral relations between organisms, to
    represent the evolutionary tree of life. Although
    traditionally such cladograms were generated largely
    on the basis of morphological characters, DNA and
    RNA sequencing data and computational phylogenetics
    are now very commonly used in the generation of             A horizontal cladogram, with the ancestor (not named) to the left
    cladograms.
    Generating a cladogram
    A greatly simplified procedure for generating a
    cladogram is:[1]
    1. Gather and organize data
    2. Consider possible cladograms
    3. Select best cladogram
    Step 1
    A cladistic analysis begins with the following data:
                                                                       A vertical cladogram, with the ancestor at the top
    • a list of species to be organized
    • a list of characteristics to be compared
    • for each species, the value of each of the listed
      characteristics or character states
    For example, if analyzing 20 species of birds, the data
    might be:
    • the list of 20 species
    • characteristics such as genome sequence, skeletal
      anatomy, biochemical processes, and feather
      coloration
    • for each of the 20 species, its particular genome
      sequence, skeletal anatomy, biochemical processes,
      and feather coloration                                          Two vertical cladograms, the ancestor at the bottom
    The characteristics used to create a cladogram can be roughly categorized as either morphological (synapsid skull,
    warm blooded, notochord, unicellular, etc.) or molecular (DNA, RNA, or other genetic information).[1] Prior to the
    advent of DNA sequencing, all cladistic analysis used morphological data.
    As DNA sequencing has become cheaper and easier, molecular systematics has become a more and more popular
    way to reconstruct phylogenies.[2] Using a parsimony criterion is only one of several methods to infer a phylogeny
    from molecular data; maximum likelihood and Bayesian inference, which incorporate explicit models of sequence
    evolution, are non-Hennigian ways to evaluate sequence data. Another powerful method of reconstructing
    phylogenies is the use of genomic retrotransposon markers, which are thought to be less prone to the problem of
    reversion that plagues sequence data. They are also generally assumed to have a low incidence of homoplasies
Cladogram                                                                                                                    285
    because it was once thought that their integration into the genome was entirely random; this seems at least
    sometimes not to be the case, however.
    Ideally, morphological, molecular, and possibly other phylogenies should be combined into an analysis of total
    evidence: All have different intrinsic sources of error. For example, character convergence (homoplasy) is much
    more common in morphological data than in molecular sequence data, but character reversions that are
    unrecognizable as such are more common in the latter (see long branch attraction). Morphological homoplasies can
    usually be recognized as such if character states are defined with enough attention to detail.
    Avoid homoplasies
    A homoplasy is a character that is shared by multiple species due to some cause other than common ancestry.[3]
    Typically, homoplasies occur due to convergent evolution. Use of homoplasies when building a cladogram is
    sometimes unavoidable but is to be avoided when possible.
    A well known example of homoplasy due to convergent evolution would be the character, "presence of wings".
    Though the wings of birds, bats, and insects serve the same function, each evolved independently, as can be seen by
    their anatomy. If a bird, bat, and a winged insect were scored for the character, "presence of wings", a homoplasy
    would be introduced into the dataset, and this would confound the analysis, possibly resulting in a false evolutionary
    scenario.
    Homoplasies can often be avoided outright in morphological datasets by defining characters more precisely and
    increasing their number. When analyzing "supertrees" (datasets incorporating as many taxa of a suspected clade as
    possible), it may become unavoidable to introduce character definitions that are imprecise, as otherwise the
    characters might not apply at all to a large number of taxa; to continue with the "wings" example, the presence of
    wings would hardly be a useful character if attempting a phylogeny of all Metazoa, as most of these don't have wings
    at all. Cautious choice and definition of characters thus is another important element in cladistic analyses. With a
    faulty outgroup or character set, no method of evaluation is likely to produce a phylogeny representing the
    evolutionary reality.
Cladogram                                                                                                                         286
    Step 2
    When there are just a few species being organized, it is possible to do this
    step manually, but most cases require a computer program. There are scores
    of computer programs available to support cladistics.[4] See phylogenetic
    tree for more information about tree-generating computer programs.
    Because the total number of possible cladograms grows exponentially with
    the number of species, it is impractical for a computer program to evaluate
    every individual cladogram. A typical cladistic program begins by using
    heuristic techniques to identify a small number of candidate cladograms.
    Many cladistic programs then continue the search with the following
    repetitive steps:
                                                                                                   Simple cladistics
    Step 3
    There are several algorithms available to identify the "best" cladogram.[6] Most algorithms use a metric to measure
    how consistent a candidate cladogram is with the data. Most cladogram algorithms use the mathematical techniques
    of optimization and minimization.
    In general, cladogram generation algorithms must be implemented as computer programs, although some algorithms
    can be performed manually when the data sets are trivial (for example, just a few species and a couple of
    characteristics).
    Some algorithms are useful only when the characteristic data are molecular (DNA, RNA); other algorithms are
    useful only when the characteristic data are morphological. Other algorithms can be used when the characteristic
    data includes both molecular and morphological data.
    Algorithms for cladograms include least squares, neighbor-joining, parsimony, maximum likelihood, and Bayesian
    inference.
    Biologists sometimes use the term parsimony for a specific kind of cladogram generation algorithm and sometimes
    as an umbrella term for all cladogram algorithms.[7]
    Algorithms that perform optimization tasks (such as building cladograms) can be sensitive to the order in which the
    input data (the list of species and their characteristics) is presented. Inputting the data in various orders can cause the
    same algorithm to produce different "best" cladograms. In these situations, the user should input the data in various
    orders and compare the results.
    Using different algorithms on a single data set can sometimes yield different "best" cladograms, because each
    algorithm may have a unique definition of what is "best".
Cladogram                                                                                                                                       287
    Because of the astronomical number of possible cladograms, algorithms cannot guarantee that the solution is the
    overall best solution. A nonoptimal cladogram will be selected if the program settles on a local minimum rather than
    the desired global minimum.[8] To help solve this problem, many cladogram algorithms use a simulated annealing
    approach to increase the likelihood that the selected cladogram is the optimal one.[9]
    References
    [1]    DeSalle, Rob (2002). Techniques in Molecular Systematics and Evolution. Birkhauser. ISBN 376436257X.
    [2]    Hillis, David (1996). Molecular Systematics. Sinaur. ISBN 0878932828.
    [3]    West-Eberhard, Mary Jane (2003). Developmental Plasticity and Evolution. Oxford Univ. Press. pp. 353–376. ISBN 0195122356.
    [4]    "List of Cladistics Software Programs" (http:/ / evolution. genetics. washington. edu/ phylip/ software. pars. html). .
    [5]    Hodkinson, Trevor (2006). Reconstructing the Tree of Life: Taxonomy and Systematics of Species Rich Taxa. CRC Press. p. 61–128.
          ISBN 0849395798.
    [6]    Kitching, Ian (1998). Cladistics: The Theory and Practice of Parsimony Analysis. Oxford University Press. ISBN 0198501382.
    [7]    Stewart, Caro-Beth (1993). "The Powers and Pitfalls of Parsimony". Nature 361 (6413): 603–607. doi:10.1038/361603a0. PMID 8437621.
    [8]    Foley, Peter (1993). Cladistics: A Practical Course in Systematics. Oxford Univ. Press. p. 66. ISBN 0198577664.
    [9]    Nixon K. C. (1999). "The Parsimony Ratchet: a new method for rapid parsimony analysis". Cladistics 15: 407–414.
          doi:10.1111/j.1096-0031.1999.tb00277.x.
    Molecular phylogenetics
    Molecular phylogenetics, also known as molecular systematics, is the use of the structure of molecules to gain
    information on an organism's evolutionary relationships. The result of a molecular phylogenetic analysis is expressed
    in a phylogenetic tree.
    Theoretical background
    Early attempts at molecular systematics were also termed as chemotaxonomy and made use of proteins, enzymes,
    carbohydrates and other molecules which were separated and characterized using techniques such as
    chromatography. These have been largely replaced in recent times by DNA sequencing which produces the exact
    sequences of nucleotides or bases in either DNA or RNA segments extracted using different techniques. These are
    generally considered superior for evolutionary studies since the actions of evolution are ultimately reflected in the
    genetic sequences. At present it is still a long and expensive process to sequence the entire DNA of an organism (its
    genome), and this has been done for only a few species. However it is quite feasible to determine the sequence of a
    defined area of a particular chromosome. Typical molecular systematic analyses require the sequencing of around
    1000 base pairs. At any location within such a sequence, the bases found in a given position may vary between
    organisms. The particular sequence found in a given organism is referred to as its haplotype. In principle, since there
    are four base types, with 1000 base pairs, we could have 41000 distinct haplotypes. However, for organisms within a
    particular species or in a group of related species, it has been found empirically that only a minority of sites show
    any variation at all and most of the variations that are found are correlated, so that the number of distinct haplotypes
    that are found is relatively small.
    In a molecular systematic analysis, the haplotypes are determined for a defined area of genetic material; ideally a
    substantial sample of individuals of the target species or other taxon are used however many current studies are
    based on single individuals. Haplotypes of individuals of closely related, but supposedly different, taxa are also
    determined. Finally, haplotypes from a smaller number of individuals from a definitely different taxon are
    determined: these are referred to as an out group. The base sequences for the haplotypes are then compared. In the
    simplest case, the difference between two haplotypes is assessed by counting the number of locations where they
    have different bases: this is referred to as the number of substitutions (other kinds of differences between haplotypes
    can also occur, for example the insertion of a section of nucleic acid in one haplotype that is not present in another).
    Usually the difference between organisms is re-expressed as a percentage divergence, by dividing the number of
    substitutions by the number of base pairs analysed: the hope is that this measure will be independent of the location
    and length of the section of DNA that is sequenced.
    An older and superseded approach was to determine the divergences between the genotypes of individuals by
    DNA-DNA hybridisation. The advantage claimed for using hybridisation rather than gene sequencing was that it was
    based on the entire genotype, rather than on particular sections of DNA. Modern sequence comparison techniques
    overcome this objection by the use of multiple sequences.
    Once the divergences between all pairs of samples have been determined, the resulting triangular matrix of
    differences is submitted to some form of statistical cluster analysis, and the resulting dendrogram is examined in
    order to see whether the samples cluster in the way that would be expected from current ideas about the taxonomy of
    the group, or not. Any group of haplotypes that are all more similar to one another than any of them is to any other
    haplotype may be said to constitute a clade. Statistical techniques such as bootstrapping and jackknifing help in
    providing reliability estimates for the positions of haplotypes within the evolutionary trees.
    In animals, it is often convenient to use mitochondrial DNA for molecular systematic analysis. However, because in
    mammals mitochondria are inherited only from the mother, this is not fully satisfactory, because inheritance in the
    paternal line might not be detected.
    Further reading
    • Felsenstein, J. 2004. Inferring phylogenies. Sinauer Associates Incorporated. ISBN 0-87893-177-5.
    • Hillis, D. M. & Moritz, C. 1996. Molecular systematics. 2nd ed. Sinauer Associates Incorporated. ISBN
      0-87893-282-8.
    • Page, R. D. M. & Holmes, E. C. 1998. Molecular evolution: a phylogenetic approach. Blackwell Science,
      Oxford. ISBN 0-86542-889-1.
    • Soltis, P.S., Soltis, D.E., and Doyle, J.J. (1992) Molecular systematics of plants. Chapman & Hall, New York.
      ISBN-0-41202-231-1.
    • Soltis, P.S., Soltis, D.E., and Doyle, J.J. (1998) Molecular Systematics of Plants II: DNA Sequencing. Kluwer
      Academic Publishers Boston, Dordrecht, London. ISBN-0-41211-131-4.
    See also
    •   molecular evolution
    •   computational phylogenetics
    •   PhyloCode
    •   Microbial phylogenetics
    References
    [1] Edna Suárez-Díaz & Victor H. Anaya-Muñoz (2008) History, objectivity, and the construction of molecular phylogenies. Stud. Hist. Phil.
        Biol. & Biomed. Sci. 39:451–468
    [2] Ahlquist, Jon E., 1999: Charles G. Sibley: A commentary on 30 years of collaboration. The Auk, vol. 116, no. 3 (July 1999). A PDF or DjVu
        version of this article can be downloaded from the issue's table of contents page (http:/ / elibrary. unm. edu/ sora/ Auk/ v116n03/ index. php).
    External links
    • NCBI - Systematics and Molecular Phylogenetics (http://www.ncbi.nlm.nih.gov/About/primer/phylo.html)
                                                                                                                           290
Fields
Basic principles
Charles Darwin's theory of evolution is based on three principles: natural selection, heredity, and variation. At the
time that Darwin wrote, the principles underlying heredity and variation were poorly understood. In the 1940s,
however, biologists incorporated Gregor Mendel's principles of genetics to explain both, resulting in the modern
synthesis. It was not until the 1980s and 1990s, however, when more comparative molecular sequence data between
different kinds of organisms was amassed and detailed, that an understanding of the molecular basis of the
developmental mechanisms has arisen. Currently, it is well understood how genetic mutation occurs. However,
developmental mechanisms are not understood sufficiently to explain which kinds of phenotypic variation can arise
in each generation from variation at the genetic level. Evolutionary developmental biology studies how the dynamics
of development determine the phenotypic variation arising from genetic variation and how that affects phenotypic
evolution (specially its direction). At the same time evolutionary developmental biology also studies how
development itself evolves. Thus, the origins of evolutionary developmental biology come from both an
improvement in molecular biology techniques as applied to development, and the full appreciation of the limitations
of classic neo-Darwinism as applied to phenotypic evolution. Some evo-devo researchers see themselves as
extending and enhancing the modern synthesis by incorporating into it findings of molecular genetics and
developmental biology. Others, drawing on findings of discordances between genotype and phenotype and
epigenetic mechanisms of development, are mounting an explicit challenge to neo-Darwinism.
Evolutionary developmental biology is not yet a unified discipline, but can be distinguished from earlier approaches
to evolutionary theory by its focus on a few crucial ideas. One of these is modularity: as has been long recognized,
plants and animal bodies are modular: they are organized into developmentally and anatomically distinct parts. Often
these parts are repeated, such as fingers, ribs, and body segments. Evo-devo seeks the genetic and evolutionary basis
for the division of the embryo into distinct modules, and for the partly independent development of such modules.
Evolutionary developmental biology                                                                                             291
    Another central idea is that some gene products function as switches whereas others act as diffusible signals. Genes
    specify proteins, some of which act as structural components of cells and others as enzymes that regulate various
    biochemical pathways within an organism. Most biologists working within the modern synthesis assumed that an
    organism is a straightforward reflection of its component genes. The modification of existing, or evolution of new,
    biochemical pathways (and, ultimately, the evolution of new species of organisms) depended on specific genetic
    mutations. In 1961, however, Jacques Monod, Jean-Pierre Changeux and François Jacob discovered within the
    bacterium Escherichia coli a gene that functioned only when "switched on" by an environmental stimulus.[7] Later,
    scientists discovered specific genes in animals, including a subgroup of the genes which contain the homeobox DNA
    motif, called Hox genes, that act as switches for other genes, and could be induced by other gene products,
    morphogens, that act analogously to the external stimuli in bacteria. These discoveries drew biologists' attention to
    the fact that genes can be selectively turned on and off, rather than being always active, and that highly disparate
    organisms (for example, fruit flies and human beings) may use the same genes for embryogenesis (e.g., the genes of
    the "developmental-genetic toolkit", see below), just regulating them differently.
    Similarly, organismal form can be influenced by mutations in promoter regions of genes, those DNA sequences at
    which the products of some genes bind to and control the activity of the same or other genes, not only
    protein-specifying sequences. In addition to providing new support for Darwin's assertion that all organisms are
    descended from a common ancestor, this finding suggested that the crucial distinction between different species
    (even different orders or phyla) may be due less to differences in their content of gene products than to differences in
    spatial and temporal expression of conserved genes. The implication that large evolutionary changes in body
    morphology are associated with changes in gene regulation, rather than the evolution of new genes, suggested that
    the action of natural selection on promoters responsive to Hox and other "switch" genes may play a major role in
    evolution.
    Another focus of evo-devo is developmental plasticity, the basis of the recognition that organismal phenotypes are
    not uniquely determined by their genotypes. If generation of phenotypes is conditional, and dependent on external or
    environmental inputs, evolution can proceed by a "phenotype-first" route,[3] [8] with genetic change following, rather
    than initiating, the formation of morphological and other phenotypic novelties. The case for this was argued for by
    Mary Jane West-Eberhard in her 2003 book Developmental plasticity and evolution.[8]
    History
    An early version of recapitulation theory, also called the biogenetic law or embryological parallelism, was put
    forward by Étienne Serres in 1824–26 as what became known as the "Meckel-Serres Law" which attempted to
    provide a link between comparative embryology and a "pattern of unification" in the organic world. It was supported
    by Étienne Geoffroy Saint-Hilaire as part of his ideas of idealism, and became a prominent part of his version of
    Lamarckism leading to disagreements with Georges Cuvier. It was widely supported in the Edinburgh and London
    schools of higher anatomy around 1830, notably by Robert Edmond Grant, but was opposed by Karl Ernst von
    Baer's embryology of divergence in which embryonic parallels only applied to early stages where the embryo took a
    general form, after which more specialised forms diverged from this shared unity in a branching pattern. The
    anatomist Richard Owen used this to support his idealist concept of species as showing the unrolling of a divine plan
    from an archetype, and in the 1830s attacked the transmutation of species proposed by Lamarck, Geoffroy and
    Grant.[9] In the 1850s Owen began to support an evolutionary view that the history of life was the gradual unfolding
    of a teleological divine plan,[10] in a continuous "ordained becoming", with new species appearing by natural
    birth.[11]
    In On the Origin of Species (1859), Charles Darwin proposed evolution through natural selection, a theory central to
    modern biology. Darwin recognised the importance of embryonic development in the understanding of evolution,
    and the way in which von Baer's branching pattern matched his own idea of descent with modification[12] :
Evolutionary developmental biology                                                                                                           292
   “  We can see why characters derived from the embryo should be of equal importance with those derived from the adult, for a natural
      classification of course includes all ages.
                                                  [13]
                                                                                                                                         ”
    Ernst Haeckel (1866), in his endeavour to produce a synthesis of Darwin's theory with Lamarckism and
    Naturphilosophie, proposed that "ontogeny recapitulates phylogeny," that is, the development of the embryo of every
    species (ontogeny) fully repeats the evolutionary development of that species (phylogeny), in Geoffroy's linear
    model rather than Darwin's idea of branching evolution.[12] Haeckel's concept explained, for example, why humans,
    and indeed all vertebrates, have gill slits and tails early in embryonic development. His theory has since been
    discredited. However, it served as a backdrop for a renewed interest in the evolution of development after the
    modern evolutionary synthesis was established (roughly 1936 to 1947).
    Stephen Jay Gould called this approach to explaining evolution as terminal addition; as if every evolutionary
    advance was added as new stage by reducing the duration of the older stages. The idea was based on observations of
    neoteny.[14] This was extended by the more general idea of heterochrony (changes in timing of development) as a
    mechanism for evolutionary change.[15]
    D'Arcy Thompson postulated that differential growth rates could produce variations in form in his 1917 book On
    Growth and Form. He showed the underlying similarities in body plans and how geometric transformations could be
    used to explain the variations.
    Edward B. Lewis discovered homeotic genes, rooting the emerging discipline of evo-devo in molecular genetics. In
    2000, a special section of the Proceedings of the National Academy of Sciences (PNAS) was devoted to
    "evo-devo",[16] and an entire 2005 issue of the Journal of Experimental Zoology Part B: Molecular and
    Developmental Evolution was devoted to the key evo-devo topics of evolutionary innovation and morphological
    novelty.[17]
    Toolbox genes, as well as being highly conserved, also tend to evolve the same function convergently or in parallel.
    Classic examples of this are the already mentioned Distal-less gene, which is responsible for appendage formation in
    both tetrapods and insects, or, at a finer scale, the generation of wing patterns in the butterflies Heliconius erato and
    Heliconius melpomene. These butterflies are Müllerian mimics whose coloration pattern arose in different
    evolutionary events, but is controlled by the same genes.[22] The previous supports Kirschner and Gerhardt's theory
    of Facilitated Variation, which states that morphological evolutionary novelty is generated by regulatory changes in
    various members of a large set of conserved mechanisms of development and physiology.[23]
    See also
    •   Developmental biology
    •   Animal evolution
    •   Plant Evolutionary Developmental Biology
    •   Baldwin effect
    •   Developmental systems theory
    •   Evolution of multicellularity
    •   Genetic assimilation
    •   Ontogeny
    •   Ontogeny recapitulates phylogeny
    •   List of gene families
    •   Important publications in evolutionary developmental biology
    •   Evolution and Development Leading journal
    •   Body plan
    •   Cell signaling
    •   Signal transduction
    •   Cell signaling networks
    •   Transcription factor
    •   Enhancer
    •   Enhanceosome
    •   promoter (biology)
    •   Gene regulatory network
    References
    [1] Prum, R.O., Brush, A.H. (March 2003). "Which Came First, the Feather or the Bird?". Scientific American 288 (3): 84–93.
        doi:10.1038/scientificamerican0303-84. PMID 12616863.
    [2] Hall, Brian K. (2000). "Evo-devo or devo-evo—does it matter". Evolution & Development 2: 177–178.
        doi:10.1046/j.1525-142x.2000.00003e.x.
    [3] Palmer, RA (2004). "Symmetry breaking and the evolution of development". Science 306 (5697): 828–833. doi:10.1126/science.1103707.
        PMID 15514148.
    [4] Tomarev, Stanislav I.; Callaerts, Patrick; Kos, Lidia; Zinovieva, Rina; Halder, Georg; Gehring, Walter; Piatigorsky, Joram (1997). "Squid
        Pax-6 and eye development" (http:/ / www. pnas. org/ content/ 94/ 6/ 2421. full). Proceedings of the National Academy of Sciences 94 (6):
        2421–2426. doi:10.1073/pnas.94.6.2421. .
    [5] Pichaud, Franck; Desplan, Claude (August 2002). "Pax genes and eye organogenesis". Current opinion in genetics and development 12 (4):
        430–434. doi:10.1016/S0959-437X(02)00321-0. PMID 12100888.
    [6] Pennisi, E (2002). "EVOLUTIONARY BIOLOGY:Evo-Devo Enthusiasts Get Down to Details". Science 298 (5595): 953–955..
        doi:10.1126/science.298.5595.953. PMID 12411686.
    [7] Monod, J; Changeux, JP; Jacob, F (1963). "Allosteric proteins and cellular control systems". Journal of Molecular Biology 6: 306–329.
        doi:10.1016/S0022-2836(63)80091-1. PMID 13936070.
    [8] West-Eberhard, M-J. (2003). Developmental plasticity and evolution. New York: Oxford University Press. ISBN 978-0-19-512235-0.
    [9] Desmond 1989, pp. 53–53, 86–88, 337–340
        Secord 2003, pp. 252–253
    [10] Bowler 2003, pp. 120–128, 208
        Secord 2003, pp. 424, 512
    [11] Desmond & Moore 1991, pp. 490–491
    [12] Bowler 2003, p. 170, 190-191
    [13] Darwin, Charles (1859). On the Origin of Species. London: John Murray. pp.  439–430 (http:/ / darwin-online. org. uk/ content/
        frameset?viewtype=text& itemID=F373& pageseq=457). ISBN 0801413192.
    [14] Ridley, Mark (2003). Evolution (http:/ / www. blackwellpublishing. com/ ridley/ ). Wiley-Blackwell. ISBN 978-1-4051-0345-9. .
    [15] Gould, Stephen Jay (1977). Ontogeny and Phylogeny. Cambridge, Massachusetts: Harvard University Press. ISBN 0-674-63940-5.
    [16] Goodman CS and Coughlin BS (Eds). (2000). "Special feature: The evolution of evo-devo biology" (http:/ / www. pnas. org/ cgi/ content/
        full/ 97/ 9/ 4424). Proceedings of the National Academy of Sciences 97 (9): 4424–4456. doi:10.1073/pnas.97.9.4424. PMID 10781035.
Evolutionary developmental biology                                                                                                                     295
        PMC 18255. .
    [17] Müller GB and Newman SA (Eds.) (2005). "Special issue: Evolutionary Innovation and Morphological Novelty" (http:/ / www3.
        interscience. wiley. com/ cgi-bin/ jissue/ 112149101). Journal of Exp. Zool. Part B: Molecular and Developmental Evolution 304B: 485–631.
        .
    [18] Xu, P.X., Woo, I., Her, H., Beier, D.R., Maas, R.L. (1997). "Mouse Eya homologues of the Drosophila eyes absent gene require Pax6 for
        expression in lens and nasal placode". Development 124 (1): 219–231. PMID 9006082.
    [19] Abzhanov, A.; Protas, M.; Grant, B.R.; Grant, P.R.; Tabin, C.J. (2004). "Bmp4 and Morphological Variation of Beaks in Darwin's Finches".
        Science 305 (5689): 1462–1465. doi:10.1126/science.1098095. PMID 15353802.
    [20] Cohn, M.J.; Tickle, C. (1999). "Developmental basis of limblessness and axial patterning in snakes.". Nature 399 (6735): 474–479.
        doi:10.1038/20944. PMID 10365960.
    [21] Beldade, P.; Brakefield, P.M.; Long, A.D. (2002). "Contribution of Distal-less to quantitative variation in butterfly eyespots". Nature 415
        (6869): 315–318. doi:10.1038/415315a. PMID 11797007.
    [22] Baxter, S.W.; Papa, R.; Chamberlain, N.; Humphray, S.J.; Joron, M.; Morrison, C.; ffrench-Constant, R.H.; McMillan, W.O.; Jiggins, C.D.
        (2008). "Convergent Evolution in the Genetic Basis of Mullerian Mimicry in Heliconius Butterflies" (http:/ / www. pubmedcentral. nih. gov/
        articlerender. fcgi?tool=pmcentrez& artid=2581958). Genetics 180 (3): 1567–1577. doi:10.1534/genetics.107.082982. PMID 18791259.
        PMC 2581958.
    [23] Gerhart, John; Kirschner, Marc (2007). "The theory of facilitated variation" (http:/ / www. pubmedcentral. nih. gov/ articlerender.
        fcgi?tool=pmcentrez& artid=1876433). Proceedings of the National Academy of Sciences 104 (suppl1): 8582–8589.
        doi:10.1073/pnas.0701035104. PMID 17494755. PMC 1876433.
    [24] Gerhart, John; Kirschner, Marc (1997). Cells, Embryos and Evolution. Blackwell Science. ISBN 978-0865425743.
    [25] Carroll, Sean B.; Grenier, Jennifer K.; Weatherbee, Scott D. (2005). From DNA to Diversity: Molecular Genetics and the Evolution of
        Animal Design — Second Edition. Blackwell Publishing. ISBN 1405119500.
    [26] Carroll, Sean B. (2000). "Endless forms: the evolution of gene regulation and morphological diversity". Cell 101: 577–80.
        doi:10.1016/S0092-8674(00)80868-5.
    [27] Jablonka, Eva; Lamb, Marion (1995). Epigenetic Inheritance and Evolution: The Lamarckian Dimension. Oxford, New York: Oxford
        University Press. ISBN 978-0198540632.
    [28] Müller, Gerd B. and Newman, Stuart A., ed (2003). Origination of Organismal Form: Beyond the Gene in Developmental and Evolutionary
        Biology. MIT Press.
    Sources
    • Bowler, Peter J. (2003). Evolution: the history of an idea. Berkeley: University of California Press.
      ISBN 0-520-23693-9.
    • Desmond, Adrian J. (1989). The politics of evolution: morphology, medicine, and reform in radical London.
      Chicago: University of Chicago Press. ISBN 0-226-14374-0.
    • Desmond, Adrian J.; Moore, James William (1991). Darwin. London: Michael Joseph. ISBN 0-7181-3430-3.
    • Secord, James A. (2003). Victorian sensation: the extraordinary publication, reception, and secret authorship of
      Vestiges of the natural history of creation. Chicago: University of Chicago Press. ISBN 0-226-74411-6.
    Further reading
    • Buss, Leo W. (1987). The Evolution of Individuality. Princeton University Press. ISBN 978-0691084688.
    • Carroll, Sean B. (2005). Endless Forms Most Beautiful: The New Science of Evo Devo and the Making of the
      Animal Kingdom. Norton. ISBN 9780393060164.
    • Goodwin, Brian (1994). How the Leopard Changed its Spots. Phoenix Giants. ISBN 9780691088099.
    • Hall, Brian K. & Olsen, Wendy M., ed (2007). Keywords and Concepts in Evolutionary Developmental Biology.
      New Delhi, India: Discovery Publishing House. ISBN 978-81-8356-256-0.
    • Kirschner, Marc; Gerhart, John (2005). The Plausibility of Life: Resolving Darwin's Dilemma. Yale University
      Press. ISBN 9780300108651.
    • Laubichler, Manfred D. and Maienschein, Jane, ed (2007). From Embryology to Evo-Devo: A History of
      Developmental Evolution. The MIT Press. ISBN 978-0-262-12283-2.
    • Minelli, Alessandro (2003). The Development of Animal Form: Ontogeny, Morphology, and Evolution.
      Cambridge University Press. ISBN 978-0521808514.
Evolutionary developmental biology                                                                                          296
    • Orr, H. Allen (2005-10-24). "Turned on: A revolution in the field of evolution?" (http://www.newyorker.com/
      critics/books/articles/051024crbo_books1). The New Yorker. Discussion of Carroll, Endless Forms Most
      Beautiful
    • Raff, Rudolf A. (1996). The Shape of Life: Genes, Development, and the Evolution of Animal Form. The
      University of Chicago Press. ISBN 978-0226702667.
    • Sommer, Ralf J. (2009). "The future of evo–devo: model systems and evolutionary theory". Nature Reviews
      Genetics 10 (6): 416–422. doi:10.1038/nrg2567. PMID 19369972.
    External links
    • Scott F. Gilbert, The morphogenesis of evolutionary developmental biology (http://www.ijdb.ehu.es/
      fullaccess/fulltext.03078/ft467.pdf)
    • Tardigrades (water bears) as evo-devo models, a short video from NPR's Science Friday (http://www.npr.org/
      templates/story/story.php?storyId=99800021)
    Molecular evolution
    Molecular evolution is the process of evolution at the scale of DNA, RNA, and proteins. Molecular evolution
    emerged as a scientific field in the 1960s as researchers from molecular biology, evolutionary biology and
    population genetics sought to understand recent discoveries on the structure and function of nucleic acids and
    protein. Some of the key topics that spurred development of the field have been the evolution of enzyme function,
    the use of nucleic acid divergence as a "molecular clock" to study species divergence, and the origin of
    non-functional or junk DNA. Recent advances in genomics, including whole-genome sequencing, high-throughput
    protein characterization, and bioinformatics have led to a dramatic increase in studies on the topic. In the 2000s,
    some of the active topics have been the role of gene duplication in the emergence of novel gene function, the extent
    of adaptive molecular evolution versus neutral drift, and the identification of molecular changes responsible for
    various human characteristics especially those pertaining to infection, disease, and cognition.
    Mutations
    Mutations are permanent, transmissible changes to the genetic material (usually DNA or RNA) of a cell. Mutations
    can be caused by copying errors in the genetic material during cell division and by exposure to radiation, chemicals,
    or viruses, or can occur deliberately under cellular control during the processes such as meiosis or hypermutation.
    Mutations are considered the driving force of evolution, where less favorable (or deleterious) mutations are removed
    from the gene pool by natural selection, while more favorable (or beneficial) ones tend to accumulate. Neutral
    mutations do not affect the organism's chances of survival in its natural environment and can accumulate over time,
    which might result in what is known as punctuated equilibrium; the modern interpretation of classic evolutionary
    theory.
Molecular evolution                                                                                                              297
    Related fields
    An important area within the study of molecular evolution is the use of molecular data to determine the correct
    biological classification of organisms. This is called molecular systematics or molecular phylogenetics.
    Tools and concepts developed in the study of molecular evolution are now commonly used for comparative
    genomics and molecular genetics, while the influx of new data from these fields has been spurring advancement in
    molecular evolution.
    See also
                 •   History of molecular evolution          •   Genomic organization              •   Neutral theory of molecular evolution
                 •   Chemical evolution                      •   Horizontal gene transfer          •   Nucleotide diversity
                 •   Evolution                               •   Human evolution                   •   Parsimony
                 •   Genetic drift                           •   Evolution of dietary antioxidants •   Population genetics
                 •   E. coli long-term evolution experiment •    Molecular clock                   •   Selection
                 •   Evolutionary physiology                 •   Comparative phylogenetics
    References
    [1]    Graur, D. and Li, W.-H. (2000). Fundamentals of molecular evolution. Sinauer.
    [2]    Gillespie, J. H (1991). The Causes of Molecular Evolution. Oxford University Press, New York. ISBN 0-19-506883-1.
    [3]    Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge. ISBN 0-521-23109-4.
    [4]    Kimura, Motoo (1968). "Evolutionary rate at the molecular level" (http:/ / www2. hawaii. edu/ ~khayes/ Journal_Club/ fall2006/
          Kimura_1968_Nature. pdf). Nature 217 (5129): 624–626. doi:10.1038/217624a0. PMID 5637732. .
    [5]    King, J.L. and Jukes, T.H. (1969). "Non-Darwinian Evolution" (http:/ / www. blackwellpublishing. com/ ridley/ classictexts/ king. pdf).
          Science 164 (881): 788–798. doi:10.1126/science.164.3881.788. PMID 5767777. .
    [6]    Nachman M. (2006). "Detecting selection at the molecular level" in: Evolutionary Genetics: concepts and case studies. pp. 103–118.
    [7]    The nearly neutral theory expanded the neutralist perspective, suggesting that several mutations are nearly neutral, which means both random
          drift and natural selection is relevant to their dynamics.
    [8]    Ohta, T (1992). "The nearly neutral theory of molecular evolution". Annual Review of Ecology and Systematics 23: 263–286.
          doi:10.1146/annurev.es.23.110192.001403.
    [9]    Nei, M. (2005). "Selectionism and Neutralism in Molecular Evolution" (http:/ / www. pubmedcentral. nih. gov/ articlerender.
          fcgi?tool=pmcentrez& artid=1513187). Molecular Biology and Evolution 22 (12): 2318–2342. doi:10.1093/molbev/msi242. PMID 16120807.
Molecular evolution                                                                                                                               299
        PMC 1513187.
    [10] Sueoka, N. (1964). "On the evolution of informational macromolecules". In In: Bryson, V. and Vogel, H.J.. Evolving genes and proteins.
        Academic Press, New-York. pp. 479–496.
    [11] http:/ / www. smbe. org
    Further reading
    • Li, W.-H. (2006). Molecular Evolution. Sinauer. ISBN 0878934804.
    • Lynch, M. (2007). The Origins of Genome Architecture. Sinauer. ISBN 0878934847.
    Human evolution
    Human evolution, or anthropogenesis, is the origin and evolution of Homo sapiens as a distinct species from other
    hominids, great apes and placental mammals. The study of human evolution encompasses many scientific
    disciplines, including physical anthropology, primatology, archaeology, linguistics and genetics.[1]
    The term "human" in the context of human evolution refers to the genus Homo, but studies of human evolution
    usually include other hominids, such as the Australopithecines, from which the genus Homo had diverged by about
    2.3 to 2.4 million years ago in Africa.[2] [3] Scientists have estimated that humans branched off from their common
    ancestor with chimpanzees about 5–7 million years ago. Several species and subspecies of Homo evolved and are
    now extinct. These include Homo erectus, which inhabited Asia, and Homo sapiens neanderthalensis, which
    inhabited Europe. Archaic Homo sapiens evolved between 400,000 and 250,000 years ago.
    The dominant view among scientists concerning the origin of anatomically modern humans is the "Out of Africa" or
    recent African origin hypothesis,[4] [5] [6] [7] which argues that Homo sapiens arose in Africa and migrated out of the
    continent around 50,000 to 100,000 years ago, replacing populations of Homo erectus in Asia and Homo
    neanderthalensis in Europe. Scientists supporting the alternative multiregional hypothesis argue that Homo sapiens
    evolved as geographically separate but interbreeding populations stemming from a worldwide migration of Homo
    erectus out of Africa nearly 2.5 million years ago.
    History of ideas
    The word homo, the name of the biological genus to which humans belong, is Latin for "human". It was chosen
    originally by Carolus Linnaeus in his classification system. The word "human" is from the Latin humanus, the
    adjectival form of homo. The Latin "homo" derives from the Indo-European root, dhghem, or "earth".[8]
    Carolus Linnaeus and other scientists of his time also considered the great apes to be the closest relatives of humans
    due to morphological and anatomical similarities. The possibility of linking humans with earlier apes by descent only
    became clear after 1859 with the publication of Charles Darwin's On the Origin of Species. This argued for the idea
    of the evolution of new species from earlier ones. Darwin's book did not address the question of human evolution,
    saying only that "Light will be thrown on the origin of man and his history".
Human evolution                                                                                                                     300
    The classification of humans and their relatives has changed considerably over time. The gracile Australopithecines
    are now thought to be ancestors of the genus Homo, the group to which modern humans belong. Both
    Australopithecines and Homo sapiens are part of the tribe Hominini. Recent data suggests Australopithecines were a
    diverse group and that A. africanus may not be a direct ancestor of modern humans. Reclassification of
    Australopithecines that originally were split into either gracile or robust varieties has put the latter into a family of its
    own, Paranthropus. Taxonomists place humans, Australopithecines and related species in the same family as other
    great apes, in the Hominidae.
Before Homo
Plesiadapis.
    David Begun[10] says that these primates flourished in Eurasia and that
    the lineage leading to the African apes and humans— including                             Notharctus.
    Dryopithecus—migrated south from Europe or Western Asia into
    Africa. The surviving tropical population, which is seen most completely in the upper Eocene and lowermost
    Oligocene fossil beds of the Fayum depression southwest of Cairo, gave rise to all living primates—lemurs of
    Madagascar, lorises of Southeast Asia, galagos or "bush babies" of Africa, and the anthropoids; platyrrhines or New
    World monkeys, and catarrhines or Old World monkeys and the great apes and humans.
    The earliest known catarrhine is Kamoyapithecus from uppermost Oligocene at Eragaleit in the northern Kenya Rift
    Valley, dated to 24 million years ago. Its ancestry is generally thought to be species related to Aegyptopithecus,
    Propliopithecus, and Parapithecus from the Fayum, at around 35 million years ago. In 2010, Saadanius was
    described as a close relative of the last common ancestor of the crown catarrhines, and tentatively dated to 29–28
    million years ago, helping to fill an 11-million-year gap in the fossil record.[11]
    In the early Miocene, about 22 million years ago, the many kinds of
    arboreally adapted primitive catarrhines from East Africa suggest a
    long history of prior diversification. Fossils at 20 million years ago
    include fragments attributed to Victoriapithecus, the earliest Old World
    Monkey. Among the genera thought to be in the ape lineage leading up
    to 13 million years ago are Proconsul, Rangwapithecus,
    Dendropithecus, Limnopithecus, Nacholapithecus, Equatorius,
    Nyanzapithecus, Afropithecus, Heliopithecus, and Kenyapithecus, all
    from East Africa. The presence of other generalized non-cercopithecids
                                                                                  Reconstructed tailless Proconsul skeleton.
    of middle Miocene age from sites far distant—Otavipithecus from cave
    deposits in Namibia, and Pierolapithecus and Dryopithecus from
    France, Spain and Austria—is evidence of a wide diversity of forms across Africa and the Mediterranean basin
    during the relatively warm and equable climatic regimes of the early and middle Miocene. The youngest of the
    Miocene hominoids, Oreopithecus, is from 9 million year old coal beds in Italy.
Human evolution                                                                                                                  302
    Molecular evidence indicates that the lineage of gibbons (family Hylobatidae) became distinct from Great Apes
    between 18 and 12 million years ago, and that of orangutans (subfamily Ponginae) became distinct from the other
    Great Apes at about 12 million years; there are no fossils that clearly document the ancestry of gibbons, which may
    have originated in a so-far-unknown South East Asian hominoid population, but fossil proto-orangutans may be
    represented by Ramapithecus from India and Griphopithecus from Turkey, dated to around 10 million years ago.
    Genus Homo
    Homo sapiens is the only extant species of its genus, Homo. While some other, extinct, Homo species might have
    been ancestors of Homo sapiens, many were likely our "cousins", having speciated away from our ancestral line.[12]
    [13]
         There is not yet a consensus as to which of these groups should count as separate species and which as
    subspecies. In some cases this is due to the dearth of fossils, in other cases it is due to the slight differences used to
    classify species in the Homo genus.[13] The Sahara pump theory (describing an occasionally passable "wet" Sahara
    Desert) provides an explanation of the early variation in the genus Homo.
    Based on archaeological and paleontological evidence, it has been possible to infer, to some extent, the ancient
    dietary practices of various Homo species and to study the role of diet in physical and behavioral evolution within
    Homo.[14] [15] [16] [17] [18]
    H. habilis
    Homo habilis lived from about 2.4 to 1.4 Ma. Homo habilis, the first species of the genus Homo, evolved in South
    and East Africa in the late Pliocene or early Pleistocene, 2.5–2 Ma, when it diverged from the Australopithecines.
    Homo habilis had smaller molars and larger brains than the Australopithecines, and made tools from stone and
    perhaps animal bones. One of the first known hominids, it was nicknamed 'handy man' by its discoverer, Louis
    Leakey due to its association with stone tools. Some scientists have proposed moving this species out of Homo and
    into Australopithecus due to the morphology of its skeleton being more adapted to living on trees rather than to
    moving on two legs like Homo sapiens.[19]
Human evolution                                                                                                                          303
    A famous example of Homo erectus is Peking Man; others were found in Asia (notably in Indonesia), Africa, and
    Europe. Many paleoanthropologists now use the term Homo ergaster for the non-Asian forms of this group, and
    reserve Homo erectus only for those fossils that are found in Asia and meet certain skeletal and dental requirements
    which differ slightly from H. ergaster.
Human evolution                                                                                                            304
    H. heidelbergensis
    H. heidelbergensis (Heidelberg Man) lived from about 800,000 to about 300,000 years ago. Also proposed as Homo
    sapiens heidelbergensis or Homo sapiens paleohungaricus.[29]
    H. neanderthalensis
    H. neanderthalensis lived from 400,000[31] years ago. Also
    proposed as Homo sapiens neanderthalensis: there is ongoing
    debate over whether the "Neanderthal Man" was a separate
    species, Homo neanderthalensis, or a subspecies of H. sapiens.[32]
    While the debate remains unsettled, evidence from sequencing
    mitochondrial DNA indicates that no significant gene flow
    occurred between H. neanderthalensis and H. sapiens, and,
    therefore, the two were separate species that shared a common
    ancestor about 660,000 years ago.[33] [34] In 1997, Mark Stoneking
    stated: "These results [based on mitochondrial DNA extracted
    from Neanderthal bone] indicate that Neanderthals did not
                                                                                   Le Ferrassie Neanderthal skull (cast)
    contribute mitochondrial DNA to modern humans… Neanderthals
    are not our ancestors." Subsequent investigation of a second
    source of Neanderthal DNA supported these findings.[35] However, the 2010 sequencing of the Neanderthal genome
    indicates that Neanderthals did indeed interbreed with H. sapiens circa 75,000 BC (after H. sapiens moved out from
    Africa, but before they separated into Europe, the Middle East, and Asia).[36] Nearly all modern humans have 1% to
    4% of their DNA derived from Neanderthal DNA.[36] (To appreciate how big of a percentage this is, consider that
    humans and chimps only differ in 1.5% of their DNA.) This 1-4% bit of DNA is only present in non-African
    humans.[36] However, supporters of the multiregional hypothesis point to recent studies indicating non-African
    nuclear DNA heritage dating to one Ma,[37] although the reliability of these studies has been questioned.[38]
    Competition from Homo sapiens probably contributed to Neanderthal extinction.[39] [40] They could have coexisted
    in Europe for as long as 10,000 years.[41]
Human evolution                                                                                                                   305
    H. sapiens
    H. sapiens (the adjective sapiens is Latin for "wise" or "intelligent") have lived from about 250,000 years ago to the
    present. Between 400,000 years ago and the second interglacial period in the Middle Pleistocene, around 250,000
    years ago, the trend in skull expansion and the elaboration of stone tool technologies developed, providing evidence
    for a transition from H. erectus to H. sapiens. The direct evidence suggests there was a migration of H. erectus out of
    Africa, then a further speciation of H. sapiens from H. erectus in Africa. A subsequent migration within and out of
    Africa eventually replaced the earlier dispersed H. erectus. This migration and origin theory is usually referred to as
    the recent single origin or Out of Africa theory. Current evidence does not preclude some multiregional evolution or
    some admixture of the migrant H. sapiens with existing Homo populations. This is a hotly debated area of
    paleoanthropology.
    Current research has established that humans are genetically highly homogenous; that is, the DNA of individuals is
    more alike than usual for most species, which may have resulted from their relatively recent evolution or the
    possibility of a population bottleneck resulting from cataclysmic natural events such as the Toba catastrophe.[42] [43]
    [44]
         Distinctive genetic characteristics have arisen, however, primarily as the result of small groups of people moving
    into new environmental circumstances. These adapted traits are a very small component of the Homo sapiens
    genome, but include various characteristics such as skin color and nose form, in addition to internal characteristics
    such as the ability to breathe more efficiently in high altitudes.
    H. sapiens idaltu, from Ethiopia, is a possible extinct sub-species who lived from about 160,000 years ago.
    H. floresiensis
    H. floresiensis, which lived from approximately 100,000 to 12,000 before present, has been nicknamed hobbit for its
    small size, possibly a result of insular dwarfism.[45] H. floresiensis is intriguing both for its size and its age, being a
    concrete example of a recent species of the genus Homo that exhibits derived traits not shared with modern humans.
    In other words, H. floresiensis share a common ancestor with modern humans, but split from the modern human
    lineage and followed a distinct evolutionary path. The main find was a skeleton believed to be a woman of about 30
    years of age. Found in 2003 it has been dated to approximately 18,000 years old. The living woman was estimated to
    be one meter in height, with a brain volume of just 380 cm3 (considered small for a chimpanzee and less than a third
    of the H. sapiens average of 1400 cm3).
    However, there is an ongoing debate over whether H. floresiensis is indeed a separate species.[46] Some scientists
    presently believe that H. floresiensis was a modern H. sapiens suffering from pathological dwarfism.[47] This
    hypothesis is supported in part, because some modern humans who live on Flores, the island where the skeleton was
    found, are pygmies. This coupled with pathological dwarfism, it is argued, could indeed create a hobbit-like human.
    The other major attack on H. floresiensis is that it was found with tools only associated with H. sapiens.[47]
    The hypothesis of pathological dwarfism, however, fails to explain additional anatomical features that are unlike
    those of modern humans (diseased or not) but much like those of ancient members of our genus. Aside from cranial
    features, these features include the form of bones in the wrist, forearm, shoulder, knees, and feet.
    Denisova hominin
    In 2008, archeologists working at the site of Denisova Cave in the Altai Mountains of Siberia uncovered a small
    bone fragment from the fifth finger of a juvenile hominin, dubbed the "X-woman" (referring to the maternal descent
    of mitochondrial DNA[48] , or the Denisova hominin. Artifacts, including a bracelet, excavated in the cave at the
    same level were carbon dated to around 40,000 BP. As DNA had survived in the fossil fragment due to the cool
    climate of the Denisova Cave, a team of scientists from the Max Planck Institute for Evolutionary Anthropology in
    Leipzig, Germany sequenced mtDNA extracted from the fragment.[49]
Human evolution                                                                                                                                    306
    The analysis indicated that modern humans, Neanderthals, and the Denisova hominin last shared a common ancestor
    around 1 million years ago.[50] Modern humans are known to have overlapped with Neanderthals in Europe for more
    than 10,000 years, and the discovery raises the possibility that Neanderthals, modern humans and the Denisovan
    hominin may have co-existed together.
    The DNA analysis further indicated that this new hominin species was the result of an early migration out of Africa,
    distinct from the later out-of-Africa migrations associated with Neanderthals and modern humans, but also distinct
    from the earlier African exodus of Homo erectus.[50] Professor Chris Stringer, human origins researcher at London's
    Natural History Museum and one of the leading proponents of the recent single-origin hypothesis, remarked: "This
    new DNA work provides an entirely new way of looking at the still poorly understood evolution of humans in
    central and eastern Asia." Pääbo noted that the existence of this distant branch creates a much more complex picture
    of humankind during the Late Pleistocene.[48]
          Species           Lived when        Lived where            Adult       Adult mass         Cranial          Fossil        Discovery /
                               (Ma)                                 height                       capacity (cm³)     record        publication of
                                                                                                                                     name
        H. antecessor      1.2 – 0.8       Spain                  1.75 m (5.7 90 kg (200 lb)     1,000            2 sites        1997
                                                                  ft)
         H. erectus        1.5 – 0.2       Africa, Eurasia        1.8 m (5.9   60 kg (130 lb)    850 (early) –    Many           1891/1892
                                           (Java, China, India,   ft)                            1,100 (late)
                                           Caucasus)
       H. floresiensis     0.10? – 0.012   Indonesia              1.0 m (3.3   25 kg (55 lb)     400              7              2003/2004
                                                                  ft)                                             individuals
     H. heidelbergensis    0.6 – 0.35      Europe, Africa,        1.8 m (5.9   60 kg (130 lb)    1,100–1,400      Many           1908
                                           China                  ft)
     H. neanderthalensis   0.35 – 0.03     Europe, Western        1.6 m (5.2   55–70 kg          1,200–1,900      Many           (1829)/1864
                                           Asia                   ft)          (120–150 lb)
                                                                               (heavily built)
    Use of tools
    Using tools has been interpreted as a sign of intelligence, and it
    has been theorized that tool use may have stimulated certain
    aspects of human evolution—most notably the continued
    expansion of the human brain. Paleontology has yet to explain the
    expansion of this organ over millions of years despite being
    extremely demanding in terms of energy consumption. The brain
    of a modern human consumes about 20 watts (400 kilocalories per
    day), which is one fifth of the energy consumption of a human
    body. Increased tool use would allow hunting for energy-rich meat
    products, and would enable processing more energy-rich plant
                                                                               "A sharp rock", an Oldowan pebble tool, the most basic
    products. Researchers have suggested that early hominids were                               of human stone tools
    thus under evolutionary pressure to increase their capacity to
    create and use tools.[51]
    In 1994, Randall Susman used the anatomy of opposable thumbs as the basis for his argument that both the Homo
    and    Paranthropus    species    were    toolmakers.    He     compared       bones    and      muscles    of
Human evolution                                                                                                                     308
    Stone tools
    Stone tools are first attested around 2.6 Ma, when H. habilis in
    Eastern Africa used so-called pebble tools, choppers made out of
    round pebbles that had been split by simple strikes.[53] This marks
    the beginning of the Paleolithic, or Old Stone Age; its end is taken
    to be the end of the last Ice Age, around 10,000 years ago. The
    Paleolithic is subdivided into the Lower Paleolithic (Early Stone
    Age, ending around 350,000–300,000 years ago), the Middle
    Paleolithic (Middle Stone Age, until 50,000–30,000 years ago),
    and the Upper Paleolithic.
    Multiregional model
    Multiregional evolution, a model to account for the pattern of human evolution, was proposed by Milford H.
    Wolpoff[56] in 1988.[57] Multiregional evolution holds that human evolution from the beginning of the Pleistocene
    2.5 million years BP to the present day has been within a single, continuous human species, evolving worldwide to
    modern Homo sapiens.
    According to the multiregional hypothesis, fossil and genomic data are evidence for worldwide human evolution and
    contradict the recent speciation postulated by the Recent African origin hypothesis. The fossil evidence was
    insufficient for Richard Leakey to resolve this debate.[58] Studies of haplogroups in Y-chromosomal DNA and
    mitochondrial DNA have largely supported a recent African origin.[59] Evidence from autosomal DNA also supports
    the Recent African origin. However the presence of archaic admixture in modern humans remains a possibility and
    has been suggested by some studies.[60]
    Out of Africa
    According to the Out of Africa model, developed by Chris Stringer and Peter Andrews, modern H. sapiens evolved
    in Africa 200,000 years ago. Homo sapiens began migrating from Africa between 70,000 – 50,000 years ago and
    eventually replaced existing hominid species in Europe and Asia.[61] [62] Out of Africa has gained support from
    research using mitochondrial DNA (mtDNA). After analysing genealogy trees constructed using 133 types of
    mtDNA, researchers concluded that all were descended from a woman from Africa, dubbed Mitochondrial Eve. Out
    of Africa is also supported by the fact that mitochondrial genetic diversity is highest among African populations.[63]
    There are differing theories on whether there was a single exodus or several. A multiple dispersal model involves the
    Southern Dispersal theory,[64] which has gained support in recent years from genetic, linguistic and archaeological
    evidence. In this theory, there was a coastal dispersal of modern humans from the Horn of Africa around 70,000
    years ago. This group helped to populate Southeast Asia and Oceania, explaining the discovery of early human sites
    in these areas much earlier than those in the Levant. A second wave of humans dispersed across the Sinai peninsula
    into Asia, resulting in the bulk of human population for Eurasia. This second group possessed a more sophisticated
    tool technology and was less dependent on coastal food sources than the original group. Much of the evidence for the
    first group's expansion would have been destroyed by the rising sea levels at the end of the Holocene era.[64] The
    multiple dispersal model is contradicted by studies indicating that the populations of Eurasia and the populations of
    Southeast Asia and Oceania are all descended from the same mitochondrial DNA lineages, which support a single
    migration out of Africa that gave rise to all non-African populations.[65]
    The broad study of African genetic diversity headed by Dr. Sarah Tishkoff found the San people to express the
    greatest genetic diversity among the 113 distinct populations sampled, making them one of 14 "ancestral population
    clusters". The research also located the origin of modern human migration in south-western Africa, near the coastal
    border of Namibia and Angola.[66]
Human evolution                                                                                                              310
    According to the Toba catastrophe theory to which some anthropologists and archeologists subscribe, the
    supereruption of Lake Toba on Sumatra island in Indonesia roughly 70,000 years ago had global consequences,[67]
    killing most humans then alive and creating a population bottleneck that affected the genetic inheritance of all
    humans today.[68]
    Genetics
    Human evolutionary genetics studies how one human genome differs from the other, the evolutionary past that gave
    rise to it, and its current effects. Differences between genomes have anthropological, medical and forensic
    implications and applications. Genetic data can provide important insight into human evolution.
       Species list
       This list is in chronological order across the page by genus.
       See also
                                    •   List of human evolution fossils    •   Evolutionary psychology
                                    •   Timeline of human evolution        •   History of Earth
                                    •   Archaeogenetics                    •   Hominid intelligence
                                    •   Dual inheritance theory            •   Human behavioral ecology
                                    •   Dysgenics                          •   Human skeletal changes due to bipedalism
                                    •   Evolutionary anthropology          •   Human vestigiality
                                    •   Evolutionary medicine              •   Ida (fossil)
                                    •   Evolutionary neuroscience          •   Pan prior
                                    •   Evolution of human intelligence •      Physical anthropology
                                    •   Evolution of morality              •   Sahara pump theory
                                    •   Evolutionary origin of religions •     Sexual selection in human evolution
                                                                           •   Sociocultural evolution
Human evolution                                                                                                                                          312
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        Human Populations" (http:/ / www. pubmedcentral. nih. gov/ articlerender. fcgi?tool=pmcentrez& artid=2734152). Molecular Biology and
        Evolution 26 (8): 1823. doi:10.1093/molbev/msp096. PMID 19420049. PMC 2734152.
    [61] Modern Humans Came Out of Africa, "Definitive" Study Says (http:/ / news. nationalgeographic. com/ news/ 2007/ 07/
        070718-african-origin. html)
    [62] Stringer CB, Andrews P (March 1988). "Genetic and fossil evidence for the origin of modern humans". Science 239 (4845): 1263–8.
        doi:10.1126/science.3125610. PMID 3125610.
    [63] Cann RL, Stoneking M, Wilson AC (1987). "Mitochondrial DNA and human evolution" (http:/ / artsci. wustl. edu/ ~landc/ html/ cann/ ).
        Nature 325 (6099): 31–6. doi:10.1038/325031a0. PMID 3025745. .
    [64] Searching for traces of the Southern Dispersal (http:/ / www. human-evol. cam. ac. uk/ Projects/ sdispersal/ sdispersal. htm), by Dr. Marta
        Mirazón Lahr, et al.
    [65] Macaulay, V.; Hill, C; Achilli, A; Rengo, C; Clarke, D; Meehan, W; Blackburn, J; Semino, O et al. (2005). "Single, Rapid Coastal
        Settlement of Asia Revealed by Analysis of Complete Mitochondrial Genomes" (http:/ / www. sciencemag. org/ cgi/ content/ abstract/ 308/
        5724/ 1034). Science 308 (5724): 1034. doi:10.1126/science.1109792. PMID 15890885. .
    [66] BBC World News "Africa's genetic secrets unlocked" (http:/ / news. bbc. co. uk/ 2/ hi/ science/ nature/ 8027269. stm), 1 May 2009; the
        results were published in the online edition of the journal Science.
    [67] " The new batch - 150,000 years ago (http:/ / www. bbc. co. uk/ sn/ prehistoric_life/ human/ human_evolution/ new_batch1. shtml)". BBC -
        Science & Nature - The evolution of man.
    [68] "When humans faced extinction" (http:/ / news. bbc. co. uk/ 2/ hi/ science/ nature/ 2975862. stm). BBC. 2003-06-09. . Retrieved
        2007-01-05.
    [69] Medical Research Council (UK) ((November 21, 2009)). "Brain Disease 'Resistance Gene' Evolves in Papua New Guinea Community;
        Could Offer Insights Into CJD" (http:/ / www. sciencedaily. com/ releases/ 2009/ 11/ 091120091959. htm). Science Daily (online) (Science
        News). . Retrieved 2009-11-22.
    [70] Mead, S.; Whitfield, J.; Poulter, M.; Shah, P.; Uphill, J.; Campbell, T.; Al-Dujaily, H.; Hummerich, H. et al. (2009). "A Novel Protective
        Prion Protein Variant that Colocalizes with Kuru Exposure.". The New England journal of medicine 361 (21): 2056–2065.
        doi:10.1056/NEJMoa0809716. PMID 19923577.
    [71] Byars, S. G.; Ewbank, D.; Govindaraju, D. R.; Stearns, S. C. (2009). "Evolution in Health and Medicine Sackler Colloquium: Natural
        selection in a contemporary human population" (http:/ / www. pubmedcentral. nih. gov/ articlerender. fcgi?tool=pmcentrez& artid=2868295).
        Proceedings of the National Academy of Sciences 107: 1787. doi:10.1073/pnas.0906199106. PMID 19858476. PMC 2868295.
    Further reading
    • Hill, Andrew; Ward, Steven (1988). "Origin of the hominidae: The record of african large hominoid evolution
      between 14 my and 4 my". Yearbook of Physical Anthropology 31 (59): 49–83. doi:10.1002/ajpa.1330310505
    • Alexander, R. D. (1990). "How Did Humans Evolve? Reflections on the Uniquely Unique Species" (http://
      insects.ummz.lsa.umich.edu/pdfs/Alexander1990.pdf). University of Michigan Museum of Zoology Special
      Publication (University of Michigan Museum of Zoology) (1): 1–38.
    • Flinn, M. V., Geary, D. C., & Ward, C. V. (2005). Ecological dominance, social competition, and coalitionary
      arms races: Why humans evolved extraordinary intelligence. Evolution and Human Behavior, 26, 10-46. Full text.
      (http://web.missouri.edu/~gearyd/Flinnetal2005.pdf)PDF (345 KB)
    • edited by Steve Jones, Robert Martin, and David Pilbeam ; foreword by Richard Dawkins. (1994). Jones, S.,
      Martin, R., & Pilbeam, D.. ed. The Cambridge Encyclopedia of Human Evolution. Cambridge: Cambridge
      University Press. ISBN 0-521-32370-3. Also ISBN 0-521-46786-1
Human evolution                                                                                                       315
    • Wolfgang Enard et al. (2002-08-22). "Molecular evolution of FOXP2, a gene involved in speech and language".
      Nature 418: 870.
    • DNA Shows Neandertals Were Not Our Ancestors (http://www.psu.edu/ur/NEWS/news/Neandertal.html)
    • J. W. IJdo, A. Baldini, D. C. Ward, S. T. Reeders, R. A. Wells (October 1991). "Origin of human chromosome 2:
      An ancestral telomere-telomere fusion" (http://www.pnas.org/cgi/reprint/88/20/9051.pdf) (PDF). Genetics
      88: 9051–9055.—two ancestral ape chromosomes fused to give rise to human chromosome 2.
    • Ovchinnikov, et al.; Götherström, Anders; Romanova, Galina P.; Kharitonov, Vitaliy M.; Lidén, Kerstin;
      Goodwin, William (2000). "Molecular analysis of Neanderthal DNA from the Northern Caucasus". Nature 404
      (6777): 490. doi:10.1038/35006625. PMID 10761915.
    • Heizmann, Elmar P J, Begun, David R (2001). "The oldest Eurasian hominoid". Journal of Human Evolution 41
      (5): 463. doi:10.1006/jhev.2001.0495. PMID 11681862.
    • BBC: Finds test human origins theory. (http://news.bbc.co.uk/2/hi/science/nature/6937476.stm)
      2007-08-08 Homo habilis and Homo erectus are sister species that overlapped in time.
    External links
    • BBC: The Evolution of Man (http://www.bbc.co.uk/sn/prehistoric_life/human/human_evolution/index.
      shtml)
    • Illustrations from Evolution (textbook) (http://www.evolution-textbook.org/content/free/figures/ch25.html)
    • Smithsonian – Homosapiens (http://www.mnh.si.edu/anthro/humanorigins/ha/sap.htm)
    • Smithsonian – The Human Origins Program (http://www.mnh.si.edu/anthro/humanorigins/faq/encarta/
      encarta.htm)
    • Becoming Human: Paleoanthropology, Evolution and Human Origins, presented by Arizona State University's
      Institute of Human Origins (http://www.becominghuman.org)
Evolutionary psychology                                                                                                                    316
    Evolutionary psychology
    Evolutionary psychology (EP) explains psychological traits—such as memory, perception, or language—as
    adaptations, that is, as the functional products of natural selection or sexual selection. Adaptationist thinking about
    physiological mechanisms, such as the heart, lungs, and immune system, is common in evolutionary biology.
    Evolutionary psychology applies the same thinking to psychology.
    Modern evolutionary psychologists argue that much of human behavior is generated by psychological adaptations
    that evolved to solve recurrent problems in human ancestral environments.[1] They hypothesize, for example, that
    humans have inherited special mental capacities for acquiring language, making it nearly automatic, while inheriting
    no capacity specifically for reading and writing.
    Other adaptations, according to EP, might include the abilities to infer others' emotions, to discern kin from non-kin,
    to identify and prefer healthier mates, to cooperate with others, and so on. Consistent with the theory of natural
    selection, evolutionary psychology sees organisms as often in conflict with others of their species, including mates
    and relatives. For example, mother mammals and their young offspring sometimes struggle over weaning, which
    benefits the mother more than the child. Humans, however, have a marked capacity for cooperation under certain
    conditions as well.
    Evolutionary psychologists see those behaviors and emotions that are nearly universal, such as fear of spiders and
    snakes, as more likely to reflect evolved adaptations. Evolved psychological adaptations (such as the ability to learn
    a language) interact with cultural inputs to produce specific behaviors (e.g., the specific language learned). This view
    is contrary to the idea that human mental faculties are general-purpose learning mechanisms.
    Overview
    Evolutionary psychology (EP) is an approach to the entire discipline that views human nature as a universal set of
    evolved psychological adaptations to recurring problems in the ancestral environment. Proponents of EP suggest that
    it seeks to heal a fundamental division at the very heart of science --- that between the soft human social sciences and
    the hard natural sciences, and that the fact that human beings are living organisms demands that psychology be
    understood as a branch of biology. Anthropologist John Tooby and psychologist Leda Cosmides note:
           "Evolutionary psychology is the long-forestalled scientific attempt to assemble out of the disjointed,
           fragmentary, and mutually contradictory human disciplines a single, logically integrated research
           framework for the psychological, social, and behavioral sciences—a framework that not only
           incorporates the evolutionary sciences on a full and equal basis, but that systematically works out all of
           the revisions in existing belief and research practice that such a synthesis requires."[2]
    In the distant future I see open fields for far more important researches. Psychology will be based on a new foundation, that of the
    necessary acquirement of each mental power and capacity by gradation. Light will be thrown on the origin of man and his history.
    Just as human physiology and evolutionary physiology have worked to identify physical adaptations of the body that
    represent "human physiological nature," the purpose of evolutionary psychology is to identify evolved emotional and
    cognitive adaptations that represent "human psychological nature." EP is, to quote Steven Pinker, "not a single
    theory but a large set of hypotheses" and a term which "has also come to refer to a particular way of applying
    evolutionary theory to the mind, with an emphasis on adaptation, gene-level selection, and modularity."
    Evolutionary psychology is founded on a computational theory of mind maintaining that our "inner world" is the
    result of complex neural structures and interactions in the brain. For example, our brains can perceive a spider,
    compute that it is a potential threat, and initiate a fear response.
Evolutionary psychology                                                                                                                                317
    EP proposes that the human brain comprises many functional mechanisms,[3] called psychological adaptations or
    evolved cognitive mechanisms or cognitive modules designed by the process of natural selection. Examples include
    language acquisition modules, incest avoidance mechanisms, cheater detection mechanisms, intelligence and
    sex-specific mating preferences, foraging mechanisms, alliance-tracking mechanisms, agent detection mechanisms,
    and others. EP has roots in cognitive psychology and evolutionary biology (See also sociobiology).
    It also draws on behavioral ecology, artificial intelligence, genetics, ethology, anthropology, archaeology, biology,
    and zoology. EP is closely linked to sociobiology, but there are key differences between them including the emphasis
    on domain-specific rather than domain-general mechanisms, the relevance of measures of current fitness, the
    importance of mismatch theory, and psychology rather than behaviour. Most of what is now labeled as
    sociobiological research is now conducted in the field of behavioral ecology.
    The term evolutionary psychology was probably coined by American biologist Michael Ghiselin in a 1973 article
    published in the journal Science.[4] Jerome Barkow, Leda Cosmides and John Tooby popularized the term
    "evolutionary psychology" in their highly influential 1992 book The Adapted Mind: Evolutionary Psychology and
    The Generation of Culture.[5] EP has been applied to the study of many fields, including economics, aggression, law,
    psychiatry, politics, literature, and sex.
    EP uses Nikolaas Tinbergen's four categories of questions and explanations of animal behavior. Two categories are
    at the species level; two, at the individual level, as noted in the table below.
    Related disciplines
    The content of EP has derived from, on the one
    hand, the biological sciences (especially
    evolutionary theory as it relates to ancient human
    environments, the study of paleoanthropology and
    animal behavior) and, on the other, the human
    sciences especially psychology. Evolutionary
    biology as an academic discipline emerged with
    the modern evolutionary synthesis in the 1930s
    and 1940s,[7] although it was not until the 1970s
    and 1980s that university departments included
    the term evolutionary biology in their titles.
    Several behavioural subjects relate to this core
    discipline: in the 1930s the study of animal            Nobel Laureates Nikolaas Tinbergen (left) and Konrad Lorenz (right) who
                                                              were, with Karl von Frisch, acknowledged for work on animal behavior
    behaviour (ethology) emerged with the work of
                                                             "The Nobel Prize in Physiology or Medicine 1973". Nobel Foundation. .
    Dutch biologist Nikolaas Tinbergen and Austrian                                   Retrieved 2007-07-28.
    biologists Konrad Lorenz and Karl von Frisch. In
    the 1970s two major branches developed from ethology. Firstly, the study of animal social behavior (including
    humans) generated sociobiology, defined by its pre-eminent proponent Edward O. Wilson in 1975 as "the systematic
    study of the biological basis of all social behavior"[8] and in 1978 as "the extension of population biology and
    evolutionary theory to social organization".[9] Secondly, there was behavioral ecology which placed less emphasis on
    social behavior by focusing on the ecological and evolutionary basis of both animal and human behavior.
    From psychology there are the primary streams of developmental, social and cognitive psychology. Establishing
    some measure of the relative influence of genetics and environment on behavior has been at the core of behavioral
    genetics and its variants, notably studies at the molecular level that examine the relationship between genes,
    neurotransmitters and behavior. Dual inheritance theory (DIT), developed in the late 1970s and early 1980s, has a
    slightly different perspective by trying to explain how human behavior is a product of two different and interacting
    evolutionary processes: genetic evolution and cultural evolution. DIT is a "middle-ground" between much of social
    science, which views culture as the primary cause of human behavioral variation, and human sociobiology and
    evolutionary psychology which view culture as an insignificant by-product of genetic selection.[10]
    Principles
    Leading practitioners of EP have proposed a foundation of core premises. Those proposed by David Buss state that:
    1. Manifest behavior depends on underlying psychological mechanisms, information processing devices housed in
       the brain, in conjunction with the external and internal inputs that trigger their activation.
    2. Evolution by selection is the only known causal process capable of creating such complex organic mechanisms.
    3. Evolved psychological mechanisms are functionally specialized to solve adaptive problems that recurred for
       humans over deep evolutionary time.
    4. Selection designed the information processing of many evolved psychological mechanisms to be adaptively
       influenced by specific classes of information from the environment.
    5. Human psychology consists of a large number of functionally specialized evolved mechanisms, each sensitive to
       particular forms of contextual input, that get combined, coordinated, and integrated with each other to produce
       manifest behavior.
    Pioneers of the subject Leda Cosmides and John Tooby consider the following five principles as critical:
Evolutionary psychology                                                                                                                  319
    1. The brain is a physical system. It functions as a computer with circuits that have evolved to generate behavior
       that is appropriate to environmental circumstances
    2. Neural circuits were designed by natural selection to solve problems that human ancestors faced while evolving
       into Homo sapiens
    3. Consciousness is a small portion of the contents and processes of the mind; conscious experience can mislead
       individuals to believe their thoughts are simpler than they actually are. Most problems experienced as easy to
       solve are very difficult to solve and are driven and supported by very complicated neural circuitry
    4. Different neural circuits are specialized for solving different adaptive problems.
    5. Modern skulls house a Stone age mind.[11]
    These researchers suggest that EP is not simply a subdiscipline of psychology but that evolutionary theory can
    provide a foundational, metatheoretical framework that integrates the entire field of psychology, in the same way it
    has for biology.[11]
    Natural selection
    Natural selection, a key component of evolutionary theory,
    involves three main ingredients:
    • Genetically based inheritance of traits - some traits are
      passed down from parents to offspring in genes,
    • Variation - heritable traits vary within a population (now
      we know that mutation is the source of some of this genetic
      variation),
    • Differential survival and reproduction - these traits will
      vary in how strongly they promote the survival and
      reproduction of their bearers.
    Selection refers to the process by which environmental
    conditions "select" organisms with the appropriate traits to        Darwin's illustrations of beak variation in the finches of the
                                                                                             Galápagos Islands.
    survive; these organisms will have such traits more strongly
    represented in the next generation. This is the basis of
    adaptive evolution. The insight of Wallace and Darwin was that this "natural selection" was creative - it could lead to
    new traits and even new species, it was based on differential survival of variable individuals, and it could explain the
    broad scale patterns of evolution.
Evolutionary psychology                                                                                                           320
    Sexual selection
    Many traits that are selected for can actually hinder survival of the organism while increasing its reproductive
    opportunities. Consider the classic example of the peacock's tail. It is metabolically costly, cumbersome, and
    essentially a "predator magnet." What the peacock's tail does do is attract mates. Thus, the type of selective process
    that is involved here is what Darwin called "sexual selection". Sexual selection can be divided into two types:
    • Intersexual selection, which refers to the traits that one sex generally prefers in the other sex, (e.g. the peacock's
      tail).
    • Intrasexual competition, which refers to the competition among members of the same sex for mating access to the
      opposite sex, (e.g. two stags locking antlers).
    Inclusive fitness
    Inclusive fitness theory, which was proposed by William D. Hamilton in 1964 as a revision to evolutionary theory, is
    essentially a combination of natural selection, sexual selection, and kin selection. It refers to the sum of an
    individual's own reproductive success in addition to the effects the individual's actions have on the reproductive
    success of their genetic relatives. General evolutionary theory, in its modern form, is essentially inclusive fitness
    theory.
    Inclusive fitness theory resolved the issue of how "altruism" evolved. The dominant, pre-Hamiltonian view was that
    altruism evolved via group selection: the notion that altruism evolved for the benefit of the group. The problem with
    this was that if one organism in a group incurred any fitness costs on itself for the benefit of others in the group, (i.e.
    acted "altruistically"), then that organism would reduce its own ability to survive and/or reproduce, therefore
    reducing its chances of passing on its altruistic traits.
    Furthermore, the organism that benefited from that altruistic act and only acted on behalf of its own fitness would
    increase its own chance of survival and/or reproduction, thus increasing its chances of passing on its "selfish" traits.
    Inclusive fitness resolved "the problem of altruism" by demonstrating that altruism can evolve via kin selection as
    expressed in Hamilton's rule:
                                                   cost < relatedness × benefit
    In other words, altruism can evolve as long as the fitness cost of the altruistic act on the part of the actor is less than
    the degree of genetic relatedness of the recipient times the fitness benefit to that recipient. This perspective reflects
    what is referred to as the gene-centered view of evolution and demonstrates that group selection is a very weak
    selective force. However, in recent years group selection has been making a comeback (albeit a controversial one) as
    multilevel selection, which posits that evolution can act not just on the "gene" level but on many levels of functional
    organization, including the "group" level.
    Foundations
Evolutionary psychology                                                                                                                                       321
   System Level:              Charles Darwin Natural Selection (or "survival selection") The bodies and minds Bones, skin, vision, pain
   Individual                 (1859)         of organisms are made up of evolved adaptations designed to help      perception, etc.
                                             the organism survive in a particular ecology (for example, the fur of
   Problem:
                                             polar bears or the anus of an octopus).
   How to survive?
   System Level:              Charles Darwin Sexual selection Organisms can evolve physical and mental traits           Peacock's tail, antlers, courtship
   Dyad                       (1859)         designed specifically to attract mates (e.g., the Peacock's tail) or to    behavior, etc.
                                             compete with members of one's own sex for access to the opposite
   Problem:
                                             sex (e.g., antlers).
   How to attract a mate
   and/or compete with
   members of one's own
   sex for access to the
   opposite sex?
   System Level:              W.D. Hamilton     Inclusive fitness (or a "gene's eye view" of selection, "kin            Altruism toward kin, parental
   Family & Kin               (1964)            selection") / The evolution of sexual reproduction Selection            investment, the behavior of the
   Problem: Gene                                occurs most robustly at the level of the gene, not the individual,      social insects with sterile workers
   replication. How to help                     group, or species. Reproductive success can thus be indirect, via       (e.g., ants).
   those with whom we                           shared genes in kin. Being altruistic toward kin can thus have
   share genes survive and                      genetic payoffs. (Also see Gene-centered view of evolution) Also,
   reproduce?                                   Hamilton argued that sexual reproduction evolved primarily as a
                                                defense against pathogens (bacteria and viruses) to "shuffle genes"
                                                to create greater diversity, especially immunological variability, in
                                                offspring.
   System Level:              Robert Trivers    Parental Investment Theory / Parent - Offspring Conflict /          Sexually dimorphic adaptations
   Kin and Family             (1972)            Reproductive Value The two sexes often have conflicting strategies  that result in a "battle of the
   Problem:                                     regarding how much to invest in offspring, and how many offspring   sexes," parental favoritism,
   How are resources best                       to have.                                                            timing of reproduction,
   allocated in mating                          Parents allocate more resources to their offspring with higher      parent-offspring conflict, sibling
   and/or parenting                             reproductive value (e.g., "mom always liked you best"). Parents and rivalry, etc.
   contexts to maximize                         offspring may have conflicting interests (e.g., when to wean,
   inclusive fitness?                           allocation of resources among offspring, etc.)
   System Level:            John von            Game Theory / Evolutionary Game Theory                                  Facultative, or
   Non-kin small group      Neumann and         Organisms adapt, or respond, to competitors depending on the            frequency-dependent,
   Problem:                 Oskar               strategies used by competitors. Strategies are evaluated by the         adaptations. Examples: hawks vs.
                            Morgenstern         probable payoffs of alternatives. In a population, this typically       doves, cooperate vs. defect, fast
   How to succeed in
                            (1944);             results in an "evolutionary stable strategy," or "evolutionary stable   vs. coy courtship, etc.
   competitive interactions
                            John Maynard        equilibrium" -- strategies that, on average, cannot be bettered by
   with non-kin? How to
                            Smith (1982)        alternative strategies.
   select the best strategy
   given the strategies
   being used by
   competitors?
   System Level:              Robert Trivers    "Tit for Tat" Reciprocity One can play nice with non-kin if a           Cheater detection, emotions of
   Non-kin small group        (1971)            mutually beneficially reciprocal relationship is maintained across      revenge and guilt, etc.
   Problem:                                     multiple social interactions, and cheating is punished.
   How to maintain
   mutually beneficial
   relationships with
   non-kin in repeated
   interactions?
Evolutionary psychology                                                                                                                                     322
   System Level:             Herbert Gintis    Generalized Reciprocity (Also called "strong reciprocity"). One can      To in-group members: Capacity
   Non-kin, large groups     (2000, 2003);     play nice with non-kin strangers even in single interactions if social   for generalized altruism, acting
   governed by rules and     and others.       rules against cheating are maintained by neutral third parties (e.g.,    like a "good Samaritan,"
   laws                                        other individuals, governments, institutions, etc.), a majority group    cognitive concepts of justice,
   Problem:                                    members cooperate by generally adhering to social rules, and social      ethics and human rights.
                                               interactions create a positive sum game (i.e., a bigger overall "pie"    To out-group members:
   How to maintain
                                               results from group cooperation).
   mutually beneficial                                                                                                  Capacity for xenophobia, racism,
   relationships with                          Generalized reciprocity may be a set of adaptations that were            warfare, genocide.
   strangers with whom                         designed for small in-group cohesion during times of high
   one may interact only                       inter-tribal warfare with out-groups.
   once?                                       Today the capacity to be altruistic to in-group strangers may result
                                               from a serendipitous generalization (or "mismatch") between
                                               ancestral tribal living in small groups and today's large societies
                                               that entail many single interactions with anonymous strangers. (The
                                               dark side of generalized reciprocity may be that these adaptations
                                               may also underlie aggression toward out-groups.)
   System Level:             Richard        Memetic Selection / Memetics Genes are not the only replicators             Language, music, evoked culture,
   Large groups / culture.   Dawkins (1976) subject to evolutionary change. "Memes" (e.g., ideas, rituals, tunes,       etc. Some possible by-products,
   Problem:                                 cultural fads, etc.) can replicate and spread from brain to brain, and      or "exaptations," of language may
   How to transfer                          many of the same evolutionary principles that apply to genes apply          include writing, reading,
   information across                       to memes as well. Genes and memes may at times co-evolve                    mathematics, etc.
   distance and time?                       ("gene-culture co-evolution").
Source:[13]
    Definition
    The term environment of evolutionary adaptedness was coined by John Bowlby as part of attachment theory. It
    refers to the environment to which a particular evolved mechanism is adapted. More specifically, the EEA is defined
    as the set of historically recurring selection pressures that formed a given adaptation, as well as those aspects of the
    environment that were necessary for the proper development and functioning of the adaptation. In the environment in
    which ducks evolved, for example, attachment of ducklings to their mother had great survival value for the
    ducklings. Because the first moving being that a duckling was likely to see was its mother, a psychological
    mechanism that evolved to form an attachment to the first moving being would therefore properly function to form
    an attachment to the mother. In novel environments, however, the mechanism can malfunction by forming an
    attachment to a dog or human instead.
    Human EEA
    Humans, comprising the genus Homo, appeared between 1.5 and 2.5 million years ago, a time that roughly coincides
    with the start of the Pleistocene 1.8 million years ago. Because the Pleistocene ended a mere 12,000 years ago, most
    human adaptations either newly evolved during the Pleistocene, or were maintained by stabilizing selection during
    the Pleistocene. Evolutionary psychology therefore proposes that the majority of human psychological mechanisms
    are adapted to reproductive problems frequently encountered in Pleistocene environments.[18] In broad terms, these
    problems include those of growth, development, differentiation, maintenance, mating, parenting, and social
    relationships.
    Mismatches
    Because humans are mostly adapted to Pleistocene environments, psychological mechanisms sometimes exhibit
    "mismatches" to the modern environment, similar to the attachment patterns of ducks. One example is the fact that
    although about 10,000 people are killed with guns in the US annually,[19] whereas spiders and snakes kill only a
    handful, people nonetheless learn to fear spiders and snakes about as easily as they do a pointed gun, and more easily
    than an unpointed gun, rabbits or flowers.[20] A potential explanation is that spiders and snakes were a threat to
    human ancestors throughout the Pleistocene, whereas guns (and rabbits and flowers) were not. There is thus a
Evolutionary psychology                                                                                                       324
    mismatch between our evolved fear-learning psychology and the modern environment.[21] [22] This mismatch also
    shows up in the phenomena of the supernormal stimulus-- a stimulus that elicits a response more strongly than the
    stimulus for which it evolved. The term was coined by Nobel Laureate Niko Tinbergen to describe animal behavior,
    but Harvard psychologist Deirdre Barrett has pointed out that supernormal stimulation governs the behavior of
    humans as powerfully as that of animals. In her 2007 book, Waistland[23] she explains junk food as an exaggerated
    stimulus to cravings for salt, sugar, and fats, and in her 2010 book, "Supernormal Stimuli: How Primal Urges
    Overran Their Evolutionary Purpose,"[24] she describes how television is an exaggeration of social cues of laughter,
    smiling faces and attention-grabbing action. Magazine centerfolds and double cheeseburgers pull instincts intended
    for an EEA where breast development was a sign of health and fertility in a prospective mate, and fat was a rare and
    vital nutrient.[25]
    Research methods
    Evolutionary psychologists use several methods and data sources to test their hypotheses, as well as various
    comparative methods to test for similarities and differences between: humans and other species, males and females,
    individuals within a species, and between the same individuals in different contexts. They also use more traditional
    experimental methods involving, for example, dependent and independent variables. Recently, methods and tools
    have been introduced based on fictional scenarios,[26] mathematical models,[27] and multi-agent computer
    simulations.[28]
    Evolutionary psychologists also use various sources of data for testing, including archeological records, data from
    hunter-gatherer societies, observational studies, self-reports, public records, and human products.[29]
    Areas of research
    Areas of research in evolutionary psychology can be divided into broad categories of adaptive problems that arise
    from the broader theory of evolution itself: survival, mating, parenting, kinship, and group living.
    Survival
    The Hunting Hypothesis might explain the emergence of human coalitions as a psychological mechanism. With men
    being the providers for the family, their lives depended on hunting wild game. They could not risk going about such
    an arduous task on their own. If they did it alone they risked not catching anything at all. Also, the meat would spoil
    if they caught a large animal and could not finish it on their own. Therefore, they hunted together with other men and
    shared their food. These human coalitions can be seen today. One form of evolutionary adaptiveness can be found in
    morning sickness in women during their first trimester.Highly acclaimed scientist Luke Gunn describes how 'Over
    thousands of years, women's bodies have adapted to the dangers that the environment may pose to the developing
    fetus when they eat something. Therefore, during this time many women experience disgust and even vomiting when
    eating certain foods which may be toxic to the fetus. Vomiting is the body's way of coping with the toxins in the
    environment and keeping them from reaching the child during this critical period when the vital organs are being
    formed. The function of this physiological reaction was to protect the fetus.'
Evolutionary psychology                                                                                                        325
    Mating
    Given that sexual reproduction is the means by which genes are propagated into future generations, sexual selection
    plays a large role in the direction of human evolution. Human mating, then, is of interest to evolutionary
    psychologists who aim to investigate evolved mechanisms to attract and secure mates.[30] Several lines of research
    have stemmed from this interest, such as studies of mate selection[31] [32] [33] mate poaching,[34] and mate
    retention,[35] to name a few.
    Much of the research on human mating is based on parental investment theory,[36] which makes important
    predictions about the different strategies men and women will use in the mating domain (see above under
    "Middle-level evolutionary theories"). In essence, it predicts that women will be more selective when choosing
    mates, whereas men will not, especially under short-term mating conditions. This has led some researchers to predict
    sex differences in such domains as sexual jealousy,[37] [38] (however, see also,)[39] wherein females will react more
    aversively to emotional infidelity and males will react more aversively to sexual infidelity. This particular pattern is
    predicted because the costs involved in mating for each sex are distinct. Women, on average, should prefer a mate
    who can offer some kind of resources (e.g., financial, commitment), which means that a woman would also be more
    at risk for losing those valued traits in a mate who commits an emotional infidelity. Men, on the other hand, are
    limited by the fact that they can never be certain of the paternity of their children because they do not bear the
    offspring themselves. This obstacle entails that sexual infidelity would be more aversive than emotional infidelity for
    a man because investing resources in another man's offspring does not lead to propagation of the man's own genes.
    Another interesting line of research is that which examines women's mate preferences across the ovulatory cycle.[40]
    [41]
         The theoretical underpinning of this research is that ancestral women would have evolved mechanisms to select
    mates with certain traits depending on their hormonal status. For example, the theory hypothesizes that, during the
    ovulatory phase of a woman's cycle (approximately days 10-15 of a woman's cycle),[42] a woman who mated with a
    male with high genetic quality would have been more likely, on average, to produce and rear a healthy offspring than
    a woman who mated with a male with low genetic quality. These putative preferences are predicted to be especially
    apparent for short-term mating domains because a potential male mate would only be offering genes to a potential
    offspring. This hypothesis allows researchers to examine whether women select mates who have characteristics that
    indicate high genetic quality during the high fertility phase of their ovulatory cycles. Indeed, studies have shown that
    women's preferences vary across the ovulatory cycle. In particular, Haselton and Miller (2006) showed that highly
    fertile women prefer creative but poor men as short-term mates. Creativity may be a proxy for good genes.[43]
    Research by Gangestad et al. (2004) indicates that highly fertile women prefer men who display social presence and
    intrasexual competition; these traits may act as cues that would help women predict which men may have, or would
    be able to acquire, resources.
History
    19th century
    After his seminal work in developing theories of natural selection, Charles Darwin devoted much of his final years to
    the study of animal emotions and psychology. He wrote two books;The Descent of Man, and Selection in Relation to
    Sex in 1871 and The Expression of the Emotions in Man and Animals in 1872 that dealt with topics related to
    evolutionary psychology. He introduced the concepts of sexual selection to explain the presence of animal structures
    that seemed unrelated to survival, such as the peacock's tail. He also introduced theories concerning group selection
    and kin selection to explain altruism. Darwin pondered why humans and animals were often generous to their group
    members. Darwin felt that acts of generosity decreased the fitness of generous individuals. This fact contradicted
    natural selection which favored the fittest individual. Darwin concluded that while generosity decreased the fitness
    of individuals, generosity would increase the fitness of a group. In this case, altruism arose due to competition
    between groups.[45] Darwin anticipated evolutionary psychology with this quote from the Origin of Species:
          In the distant future I see open fields for far more important researches. Psychology will be based on a new
          foundation, that of the necessary acquirement of each mental power and capacity by gradation.
          -- Charles Darwin, The Origin of Species, 1859, p. 449.
    According to Noam Chomsky, the founder of evolutionary psychology might have been Peter Kropotkin, who
    argued in his 1902 book Mutual Aid: A Factor of Evolution for the evolutionary benefits of behavioral traits related
    to mutual aid. [46]
    Sociobiology
    In 1975, E O Wilson built upon the works of Lorenz and Tinbergen by combining studies of animal behavior, social
    behavior and evolutionary theory in his book Sociobiology:The New Synthesis. Wilson included a chapter on human
    behavior. The specific chapter caused considerable controversy as it reignited the nature versus nurture debate.
    E O Wilson argues that the field of evolutionary psychology is essentially the same as sociobiology.[47] According to
    Wilson, the heated controversies surrounding Sociobiology:The New Synthesis, significantly stigmatized the term
    "sociobiology". Evolutionary psychology emerged as a more acceptable term in the 1980s that was not tainted by
    earlier controversies, and also emphasized that organisms are "adaptation executors" rather than "fitness maximizers"
    (which can help to explain maladaptive behaviors due to "fitness lags" given novel environmental changes). In
    addition, rather than focus primarily on overt behavior, EP attempts to identify underlying psychological adaptations
    (including emotional, motivational and cognitive mechanisms), and how these mechanisms interact with the
    developmental and current environmental influences to produce behavior.[48] [49]
Evolutionary psychology                                                                                                                             327
    Controversies
    Applying evolutionary theory to animal behavior is uncontroversial. However, adaptationist approaches to human
    psychology are contentious, with critics questioning the scientific nature of evolutionary psychology, and with more
    minor debates within the field itself.[50] [51] Criticisms of the field have also been addressed by scholars.[52]
    See also
    •   Behavioural genetics
    •   Dual inheritance theory
    •   Ethnic nepotism
    •   Evolutionary developmental psychology
    •   Evolutionary educational psychology
    •   Evolutionary neuroscience
    •   Evolutionary Psychology Research Groups and Centers
    •   Gene-centered view of evolution
    •   Human behavioral ecology
    •   List of evolutionary psychologists
    • Memetics
    • Multiple discovery
    • Outline of psychology
    Notes
    [1] Confer, Easton, Fleischman, Goetz, Lewis, Perilloux & Buss, 2010 (http:/ / homepage. psy. utexas. edu/ homepage/ Group/ BussLAB/
        pdffiles/ evolutionary_psychology_AP_2010. pdf); Buss, 2005; Durrant & Ellis, 2003; Pinker, 2002; Tooby & Cosmides, 2005
    [2] Tooby & Cosmides 2005, p. 5
    [3] evolutionary psychology (http:/ / psychegames. com/ evolutionary-psychology. htm) Psyche Games. Accessed August 22, 2007
    [4] Ghiselin MT (1973). "Darwin and Evolutionary Psychology: Darwin initiated a radically new way of studying behavior". Science 179 (4077):
        964–968. doi:10.1126/science.179.4077.964. PMID 17842154.
    [5] Tooby, John; Barkow, Jerome H.; Cosmides, Leda (1995). The Adapted mind: evolutionary psychology and the generation of culture. Oxford
        [Oxfordshire]: Oxford University Press. ISBN 0-19-510107-3.
    [6] "The Nobel Prize in Physiology or Medicine 1973" (http:/ / nobelprize. org/ nobel_prizes/ medicine/ laureates/ 1973/ index. html). Nobel
        Foundation. . Retrieved 2007-07-28.
    [7] Sterelny, Kim. 2009. In Ruse, Michael & Travis, Joseph (eds) Wilson, Edward O. (Foreword) Evolution: The First Four Billion Years.
        Harvard University Press, Cambridge, Ma. 978-o674031753. p. 314.
    [8] Wilson, Edward O. 1975. The New Synthesis. (http:/ / www. hup. harvard. edu/ catalog/ WILSOR. html''Sociobiology:) Harvard University
        Pre ss, Cambridge, Ma. ISBN 0-674-00089-7 p.4.
    [9] Wilson, Edward O. 1978. On Human Nature. Harvard University Press, Cambridge, Ma. p. x.
    [10] Laland, Kevin N. and Gillian R. Brown. 2002. Sense & Nonsense: Evolutionary Perspectives on Human Behavior. Oxford University Press,
        Oxford. pp. 287-319.
    [11] Cosmides, L; Tooby J (1997-01-13). "Evolutionary Psychology: A Primer" (http:/ / www. psych. ucsb. edu/ research/ cep/ primer. html).
        Center for Evolutionary Psychology. . Retrieved 2008-02-16.
    [12] See for example:Gould, Stephen Jay (2002). The Structure of Evolutionary Theory. Harvard University Press. ISBN 0674006135.
    [13] Mills, M.E. (2004). Evolution and motivation. Symposium paper presented at the Western Psychological Association Conference, Phoenix,
        AZ. April, 2004.
    [14] Trivers, Robert L. (March 1971). "The evolution of reciprocal altruism" (http:/ / links. jstor. org/
        sici?sici=0033-5770(197103)46:1<35:TEORA>2. 0. CO;2-S). Quarterly Review of Biology 46 (1): 35–57. doi:10.1086/406755. .
    [15] Trivers, Robert L. (1972). "Parental investment and sexual selection". In Bernard Campbell. Sexual selection and the descent of man,
        1871-1971. Aldine Transaction (Chicago). pp. 136–179. ISBN 0202020053.
    [16] Trivers, Robert L. (1974). "Parent-offspring conflict". American Zoologist (The Society for Integrative and Comparative Biology) 14 (1):
        249–264. doi:10.1093/icb/14.1.249.
    [17] See also "Environment of evolutionary adaptation," a variation of the term used in Economics, e.g., in Rubin, Paul H., 2003, "Folk
        economics" Southern Economic Journal, 70:1, July 2003, 157-171.
Evolutionary psychology                                                                                                                                   328
    [18] Symons, Donald (1992). "On the use and misuse of Darwinism in the study of human behavior". The Adapted Mind: Evolutionary
        psychology and the generation of culture. Oxford University Press. pp. 137–159. ISBN 0195101073.
    [19] CDC pdf (http:/ / www. cdc. gov/ nchs/ data/ nvsr/ nvsr54/ nvsr54_10. pdf)
    [20] Ohman, A.; Mineka, S. (2001). "Fears, phobias, and preparedness: Toward an evolved module of fear and fear learning" (http:/ / instruct.
        uwo. ca/ psychology/ 371g/ Ohman2001. pdf) (PDF). Psychological Review 108 (3): 483–522. doi:10.1037/0033-295X.108.3.483.
        PMID 11488376. . Retrieved 2008-06-16.
    [21] Pinker, S. (1999). How the Mind Works. WW Norton & Co. New York. pp. 386–389
    [22] Hagen, EH; Hammerstein, P (2006). "Game theory and human evolution: a critique of some recent interpretations of experimental games.".
        Theoretical population biology 69 (3): 339–48. doi:10.1016/j.tpb.2005.09.005. PMID 16458945.
    [23] Barrett, Deirdre. Waistland: The R/Evolutionary Science Behind Our Weight and Fitness Crisis (2007) NY, NY: W.W. Norton, . See
        especially section "Supernormal Stimuli--Why Birds Are Cuckoo" p. 31-51. (http:/ / books. google. com/ books?id=vTsnl4KRLegC&
        dq=inauthor:Deirdre+ inauthor:Barrett)
    [24] Barrett, Deirdre. SUPERNORMAL STIMULI: How Primal Urges Overran Their Evolutionary Purpose. NY NY: W.W. Norton, 2010 (http:/
        / www. amazon. com/ s/ ref=nb_sb_ss_c_1_9?url=search-alias=stripbooks& field-keywords=supernormal+ stimuli& sprefix=supernorm)
    [25] Hagen, E and Hammerstein, P (2006). "Game theory and human evolution: A critique of some recent interpretations of experimental
        games". Theoretical Population Biology 69 (3): 339. doi:10.1016/j.tpb.2005.09.005. PMID 16458945
    [26] Omar Tonsi Eldakar; David Sloan Wilson, and Rick O'Gorman. (2006). "Emotions and actions associated with altruistic helping and
        punishment" (http:/ / www. epjournal. net/ filestore/ ep04274286. pdf) (PDF). Evolutionary Psychology 4: 274–286. . Retrieved 2010-08-15.
    [27] Omar Tonsi Eldakar; David Sloan Wilson. (2008). "Selfishness as second-order altruism" (http:/ / www. pnas. org/ content/ 105/ 19/ 6982.
        full. pdf+ html) (PDF). Proceedings of the National Academy of Sciences of the USA 105 (19): 6982–6986. doi:10.1073/pnas.0712173105.
        PMID 18448681. PMC 2383986. . Retrieved 2010-08-15.
    [28] Francisco W.S. Lima; Tarik Hadzibeganovic, and Dietrich Stauffer. (2009). "Evolution of ethnocentrism on undirected and directed
        Barabási-Albert networks" (PDF). Physica A: Statistical Mechanics and its Applications 388: 4999–5004. doi:10.1016/j.physa.2009.08.029.
    [29] Buss, David (2004). Evolutionary Psychology: The New Science of the Mind. Boston: Pearson Education, Inc. ISBN 978-0205483389.
    [30] Wilson, G.D. Love and Instinct. London: Temple Smith, 1981.
    [31] Buss, D. M. (1994). The evolution of desire: Strategies of human mating. New York: Basic Books.
    [32] Buss, D. M., & Barnes, M. (1986). Preferences in human mate selection. (http:/ / homepage. psy. utexas. edu/ homepage/ Group/ BussLAB/
        pdffiles/ prefs_mate_selection_1986_jpsp. pdf) Journal of Personality and Social Psychology, 50, 559-570.
    [33] Li, N. P., Bailey, J. M., Kenrick, D. T., & Linsenmeier, J. A. W. (2002). The necessities and luxuries of mate preferences: Testing the
        tradeoffs. (http:/ / www. psych. northwestern. edu/ psych/ people/ faculty/ bailey/ Publications/ Li et al. , 2002. pdf) Journal of Personality
        and Social Psychology, 6, 947-955.
    [34] Schmitt, D. P., & Buss, D. M. (2001). Human mate poaching: Tactics and temptations for infiltrating existing relationships. (http:/ /
        homepage. psy. utexas. edu/ homepage/ Group/ BussLAB/ pdffiles/ Human_Mate_Poaching_2001. pdf) Journal of Personality and Social
        Psychology, 80, 894-917.
    [35] Buss, D. M. (1988). From vigilance to violence: Tactics of mate retention in American undergraduates. (http:/ / homepage. psy. utexas. edu/
        homepage/ Group/ BussLAB/ pdffiles/ Vigilance_to_Violence_1988. pdf) Ethology and Sociobiology, 9, 291-317.
    [36] Trivers, R. (1972). Parental investment and sexual selection. In B. Campbell (Ed.), Sexual Selection and the Descent of Man. Chicago:
        Aldine-Atherton.
    [37] Buss, D. M. (1989). Sex differences in human mate preferences: Evolutionary hypotheses tested in 37 cultures. (http:/ / homepage. psy.
        utexas. edu/ homepage/ Group/ BussLAB/ pdffiles/ SexDifferencesinHuman. PDF) Behavioral and Brain Sciences, 12, 1-49.
    [38] Buss, D. M., Larsen, R. J., Westen, D., & Semmelroth J. (1992). Sex differences in jealousy: Evolution, physiology, and psychology. (http:/
        / homepage. psy. utexas. edu/ homepage/ Group/ BussLAB/ pdffiles/ SexDifferencesinJealousy. PDF) Psychological Science 3(4), 251–255
    [39] Harris, C. R. (2002) Sexual and romantic jealousy in heterosexual and homosexual adults. Psychological Science 13(1), 7–12
    [40] Haselton, M. G., & Miller, G. F. (2006). Women's fertility across the cycle increases the short-term attractiveness of creative intelligence.
        (http:/ / www. sscnet. ucla. edu/ comm/ haselton/ webdocs/ haseltonmiller. pdf) Human Nature, 17(1), 50-73.
    [41] Gangestad, S. W., Simpson, J. A., Cousins, A. J., Garver-Apgar, C. E., & Christensen, P. N. (2004). Women's preferences for male
        behavioral displays change across the menstrual cycle. (http:/ / faculty. oxy. edu/ clint/ evolution/ articles/ Womenâs Preferences for Male
        behavioral display change across the menstrual cycle. pdf) Psychological Science, 15(3), 203-207.
    [42] Wilcox, A. J., Dunson, D. B., Weinberg, C. R., Trussell, J., & Baird, D. D. (2001). Likelihood of conception with a single act of intercourse:
        Providing benchmark rates for assessment of post-coital contraceptives. Contraception, 63, 211-215.
    [43] Miller, G. F. (2000b) The mating mind: How sexual choice shaped the evolution of human nature. Anchor Books: New York.
    [44] Santrock, W. John (2005). A Topical Approach to Life-Span Development (3rd ed.). New York, NY: McGraw-Hill. pp.62.
    [45] Shermer (2004). The Science of Good and Evil (http:/ / books. google. com/ ?id=igN6Q9weoYQC& pg=PA51& lpg=PA51& dq="from+
        competition+ between+ groups"). Henry Holt and Co.. ISBN 9780805077698. .
    [46] http:/ / www. chomsky. info/ interviews/ 200401--. htm
    [47] Wilson, EO (2000). Sociobiology (http:/ / books. google. com/ ?id=whG6wOFN-A0C& q=ISBN+ 0674000897& dq=ISBN+ 0674000897).
        Belknap Press of Harvard University Press. ISBN 9780674002357. . "Human sociobiology, now often called evolutionary psychology, has in
        the last quarter of a century emerged as its own field of study, drawing on theory and data from both biology and the social sciences."
    [48] Controversies in the evolutionary social sciences: a guide for the perplexed (http:/ / instruct. uwo. ca/ psychology/ 371g/ Smith2001. pdf)
Evolutionary psychology                                                                                                                             329
    [49] Evolutionary Psychology By Lance Workman, Will Reader (http:/ / books. google. com/ books?id=9Ni9ggiew1UC& pg=PA17&
        dq=sociobiology+ evolutionary+ psychology+ controversy& ei=XqZRSYmJOIzukgSGm-mwBg#PPA17,M1)
    [50] Alcock, John (2001). The Triumph of Sociobiology. Oxford [Oxfordshire]: Oxford University Press. ISBN 0-19-516335-4.
    [51] Segerstråle, Ullica Christina Olofsdotter (2000). Defenders of the truth : the battle for science in the sociobiology debate and beyond.
        Oxford [Oxfordshire]: Oxford University Press. ISBN 0-19-850505-1.
    [52] Tooby, J; Cosmides L (2005). "Conceptual foundations of evolutionary psychology" (http:/ / www. psych. ucsb. edu/ research/ cep/ papers/
        bussconceptual05. pdf) (pdf). ; in Buss, David M. (2005). Handbook of evolutionary psychology. Chichester: John Wiley & Sons.
        ISBN 0-471-26403-2.
    References
    • Barkow, Jerome H. (2006). Missing the Revolution: Darwinism for Social Scientists. Oxford University Press,
      USA. ISBN 0-19-513002-2.
    • Buss, David M. (2004). Evolutionary psychology: the new science of the mind. Boston: Pearson/A and B.
      ISBN 0-205-37071-3.
    • Clarke, Murray (2004). Reconstructing reason and representation. Cambridge, Mass: MIT Press.
      ISBN 0-262-03322-4.
    • Joyce, Richard (2006). The Evolution of Morality (Life and Mind: Philosophical Issues in Biology and
      Psychology). Cambridge, Mass: The MIT Press. ISBN 0-262-10112-2.
    • Miller, Geoffrey P. (2000). The mating mind: how sexual choice shaped the evolution of human nature. Garden
      City, N.Y: Doubleday. ISBN 0-385-49516-1.
    • Pinker, Steven (1997). How the mind works. New York: Norton. ISBN 0-393-04535-8.
    • Pinker, Steven (2002). The blank slate: the modern denial of human nature. New York, N.Y: Viking.
      ISBN 0-670-03151-8.
    • Richards, Janet C. (2000). Human nature after Darwin: a philosophical introduction. New York: Routledge.
      ISBN 0-415-21243-X.
    • Wilson, Edward Raymond (2000). Sociobiology: the new synthesis. Cambridge: Belknap Press of Harvard
      University Press. ISBN 0-674-00089-7.
    • Wright, Robert C. M. (1995). The moral animal: evolutionary psychology and everyday life. New York: Vintage
      Books. ISBN 0-679-76399-6.
    • Santrock, John W. (2005). The Topical Approach to Life-Span Development(3rd ed.). New York, N.Y: McGraw
      Hill. ISBN 0-07-322626-2.
    Further reading
    • Buss, D. M. (1995). Evolutionary psychology: A new paradigm for psychological science. Psychological Inquiry,
      6, 1-30. Full text (http://homepage.psy.utexas.edu/homepage/Group/BussLAB/pdffiles/
      ANewParadigmforPsych.PDF)
    • Durrant, R., & Ellis, B.J. (2003). Evolutionary Psychology. In M. Gallagher & R.J. Nelson (Eds.), Comprehensive
      Handbook of Psychology, Volume Three: Biological Psychology (pp. 1–33). New York: Wiley & Sons. Full text
      (http://media.wiley.com/product_data/excerpt/38/04713840/0471384038.pdf#search='evolutionary
      psychologypdf')
    • Kennair, L. E. O. (2002). "Evolutionary psychology: An emerging integrative perspective within the science and
      practice of psychology" (http://www.human-nature.com/nibbs/02/ep.html). Human Nature Review (2):
      17–61.
    • Medicus, G. (2005). "Evolutionary Theory of Human Sciences" (http://homepage.uibk.ac.at/~c720126/
      humanethologie/ws/medicus/block1/inhalt.html). pp. 9, 10, 11. Retrieved 2009-09-08.
    • Tooby, J. & Cosmides, L. (2005). Conceptual foundations of evolutionary psychology. In D. M. Buss (Ed.), The
      Handbook of Evolutionary Psychology (pp. 5–67). Hoboken, NJ: Wiley. Full text (http://www.psych.ucsb.edu/
      research/cep/papers/bussconceptual05.pdf)
Evolutionary psychology                                                                                                     330
    • For more readings, see the books (http://hbes.com/Hbes/books_c.htm) page at the Human Behavior and
      Evolution Society (http://hbes.com/)
    External links
    • Evolutionary Psychology page (http://www.scholarpedia.org/article/Evolutionary_psychology) at
      Scholarpedia
    • Evolutionary Psychology (http://www.dmoz.org/Science/Social_Sciences/Psychology/
      Evolutionary_Psychology/) at the Open Directory Project
    • Evolutionary Psychology page (http://en.citizendium.org/wiki/Evolutionary_psychology) at Citizendium
    • What Is Evolutionary Psychology? by Clinical Evolutionary Psychologist Dale Glaebach (http://www.
      systemsthinker.com/interests/mind/glabachep/glabachwhatisep.shtml).
    • Evolutionary Psychology-Approaches in Psychology (http://www.psychegames.com/evolutionary-psychology.
      htm)
    Academic societies
    • Human Behavior and Evolution Society (http://www.hbes.com); international society dedicated to using
      evolutionary theory to study human nature
    • The International Society for Human Ethology (http://evolution.anthro.univie.ac.at/ishe); promotes
      ethological perspectives on the study of humans worldwide
    • The Association for Politics and the Life Sciences (http://www.aplsnet.org/); international and interdisciplinary
      association concerned with evolutionary, genetic and ecological knowledge
    • Society for Evolutionary Analysis in Law (http://www.sealsite.org/)
    • The New England Institute for Cognitive Science and Evolutionary Psychology (http://www.une.edu/nei/)
    • The NorthEastern Evolutionary Psychology Society (http://www.neepsociety.com/); regional society dedicated
      to encouraging scholarship and dialogue on the topic of evolutionary psychology
    Journals
    • Evolutionary Psychology (http://www.epjournal.net/) free access online scientific journal
    • Evolution and Human Behavior (http://www.sciencedirect.com/science/journal/10905138); journal of the
      Human Behavior and Evolution Society (http://www.hbes.com)
    • Politics and the Life Sciences (http://www.politicsandthelifesciences.org/) is an interdisciplinary
      peer-reviewed journal published by the Assoication for Politics and the Life Sciences (http://www.aplsnet.org/
      )
    • Human Nature: An Interdisciplinary Biosocial Perspective (http://www.springer.com/social+sciences/
      anthropology+and+archaeology/journal/12110) advances the interdisciplinary investigation of the biological,
      social, and environmental factors that underlie human behavior. It focuses primarily on the functional unity in
      which these factors are continuously and mutually interactive. These include the evolutionary, biological, and
      sociological processes as they interact with human social behavior.
    • Biological Theory: Integrating Development, Evolution and Cognition (http://www.kli.ac.at/publications-a.
      html) devoted to theoretical advances in the fields of biology and cognition, with an emphasis on the conceptual
      integration afforded by evolutionary and developmental approaches.
    • Evolutionary Anthropology (http://www3.interscience.wiley.com/cgi-bin/jtoc?ID=38641)
    • Behavioral and Brain Sciences (http://www.bbsonline.org/) interdisciplinary articles in psychology,
      neuroscience, behavioral biology, cognitive science, artificial intelligence, linguistics and philosophy. About 30%
      of the articles have focused on evolutionary analyses of behavior.
Evolutionary psychology                                                                                                331
    Videos
    • Brief video clip re what EP is (from the "Evolution" PBS Series) (http://www.youtube.com/
      watch?v=pEmX8Rim-hs)
    • TED talk (http://www.ted.com/index.php/talks/steven_pinker_chalks_it_up_to_the_blank_slate.html) by
      Steven Pinker about his book The Blank Slate: The Modern Denial of Human Nature
    • Margaret Mead and Samoa; (http://video.google.com/videoplay?docid=-3157675332479529894&
      q=margaret+mead+and+samoa&total=11&start=0&num=10&so=0&type=search&plindex=0) review of the
      nature vs. nurture debate triggered by Coming of Age in Samoa
    • Video interview (http://video.google.com/videoplay?docid=3554279466299738997) with Steven Pinker by
      Robert Wright (journalist) discussing evolutionary psychology
    • Video interview (http://video.google.com/videoplay?docid=-4975549474851602314) with Edward O. Wilson
      by Robert Wright (journalist), contextualizing evolutionary psychology within science, politics, academics and
      philosophy
                                                                                                                              332
Creation–evolution controversy
The creation–evolution controversy (also termed the creation vs. evolution debate or the origins debate) is a
recurring cultural, political, and theological dispute about the origins of the Earth, humanity, life, and the universe.[1]
The dispute is between those who espouse religious belief and thus support a creationist view, versus those who
accept evolution, as supported by scientific consensus. The dispute particularly involves the field of evolutionary
biology, but also the fields of geology, palaeontology, thermodynamics, nuclear physics and cosmology.[2] Though
also present in Europe and elsewhere,[3] and often portrayed as part of the culture wars,[4] this debate is most
prevalent in the United States. While the controversy has a long history,[5] today it is mainly over what constitutes
good science,[6] with the politics of creationism primarily focusing on the teaching of creation and evolution in
public education.[7]
The debate also focuses on issues such as the definition of science (and of what constitutes scientific research and
evidence), science education (and whether the teaching of the scientific consensus view should be 'balanced' by also
teaching fringe theories), free speech, separation of Church and State, and theology (particularly how different
Christians and Christian denominations interpret the Book of Genesis).
Within the scientific community and academia the level of support for evolution is essentially universal,[8] while
support for biblically-literal accounts or other creationist alternatives is very small among scientists, and virtually
nonexistent among those in the relevant fields.[9]
The debate is sometimes portrayed as being between science and religion. However, as the National Academy of
Sciences states:
      Today, many religious denominations accept that biological evolution has produced the diversity of living
      things over billions of years of Earth’s history. Many have issued statements observing that evolution and the
      tenets of their faiths are compatible. Scientists and theologians have written eloquently about their awe and
      wonder at the history of the universe and of life on this planet, explaining that they see no conflict between
      their faith in God and the evidence for evolution. Religious denominations that do not accept the occurrence of
      evolution tend to be those that believe in strictly literal interpretations of religious texts.
      —National Academy of Sciences, Science, Evolution, and Creationism[10]
    Creationists during this period were largely premillennialists, whose belief in Christ's return depended on a
    quasi-literal reading of the Bible.[18] However, they were not as concerned about geology, freely granting scientists
    any time they needed before the Garden of Eden to account for scientific observations, such as fossils and geological
    findings.[19] In the immediate post-Darwinian era, few scientists or clerics rejected the antiquity of the earth or the
    progressive nature of the fossil record.[20] Likewise, few attached geological significance to the Biblical flood, unlike
    subsequent creationists.[20] Evolutionary skeptics, creationist leaders and skeptical scientists were usually willing
    either to adopt a figurative reading of the first chapter of Genesis, or to allow that the six days of creation were not
    necessarily 24-hour days.[21]
    Creationism
    During the 19th century and up until the mid-20th century, Creationism was widely accepted and was considered a
    foundational truth, but there was no official resistance to evolution by mainline denominations within the United
    States of America.[14] Around the start of the 20th century some evangelical scholars had ideas accommodating
    evolution, such as B. B. Warfield who saw it as a natural law expressing God’s will. However, development of the
    eugenics movement led many Catholics to reject evolution.[14] In this enterprise they received little aid from
    conservative Christians in Britain and Europe. In Britain this has been attributed to their minority status leading to a
    more tolerant, less militant theological tradition. The main British Creationist movement in this period was the
    Evolution Protest Movement, formed in the 1930s.[22]
Creation–evolution controversy                                                                                                   334
    Although it overturned the conviction, the Court decided that the law was not in violation of the Religious Preference
    provisions of the Tennessee Constitution (section 3 of article 1), which stated that "that no preference shall ever be
    given, by law, to any religious establishment or mode of worship."[26] The Court, applying that state Constitutional
    language, held
          We are not able to see how the prohibition of teaching the theory that man has descended from a lower order
          of animals gives preference to any religious establishment or mode of worship. So far as we know, there is no
          religious establishment or organized body that has in its creed or confession of faith any article denying or
          affirming such a theory....Protestants, Catholics, and Jews are divided among themselves in their beliefs, and
          that there is no unanimity among the members of any religious establishment as to this subject. Belief or
          unbelief in the theory of evolution is no more a characteristic of any religious establishment or mode of
          worship than is belief or unbelief in the wisdom of the prohibition laws. It would appear that members of the
          same churches quite generally disagree as to these things.
          ...Furthermore, [the Butler Act] requires the teaching of nothing. It only forbids the teaching of evolution of
          man from a lower order of animals....As the law thus stands, while the theory of evolution of man may not be
          taught in the schools of the State, nothing contrary to that theory [such as Creationism] is required to be taught.
          ...It is not necessary now to determine the exact scope of the Religious Preference clause of the Constitution ...
          Section 3 of article 1 is binding alike on the Legislature and the school authorities. So far we are clear that the
          Legislature has not crossed these constitutional limitations.
          —Scopes v. State, 289 S.W. 363, 367 (Tenn. 1927).[27]
    The interpretation of the Establishment clause up to that time was that the government could not establish a
    particular religion as the State religion. The Tennessee Supreme Court's decision held in effect that the Butler Act
    was constitutional under the state Constitution's Religious Preference Clause, because the Act did not establish one
    religion as the "State religion."[28] As a result of the holding, the teaching of evolution remained illegal in Tennessee,
    and continued campaigning succeeded in removing evolution from school textbooks throughout the United
    States.[29] [30]
Creation–evolution controversy                                                                                                 335
    Epperson v. Arkansas
    In 1968, the United States Supreme Court invalidated a forty year old Arkansas statute that prohibited the teaching of
    evolution in the public schools. A Little Rock high school biology teacher, Susan Epperson, filed suit charging the
    law violated the federal constitutional prohibition against establishment of religion as set forth in the Establishment
    Clause. The Little Rock Ministerial Association supported Epperson's challenge, declaring, "to use the Bible to
    support an irrational and an archaic concept of static and undeveloping creation is not only to misunderstand the
    meaning of the Book of Genesis, but to do God and religion a disservice by making both enemies of scientific
    advancement and academic freedom."[31] The Court held that the United States Constitution prohibits a state from
    requiring, in the words of the majority opinion, "that teaching and learning must be tailored to the principles or
    prohibitions of any religious sect or dogma."[32] But the Supreme Court decision also suggested that creationism
    could be taught in addition to evolution.[33]
    Daniel v. Waters
    Daniel v. Waters was a 1975 legal case in which the United States Court of Appeals for the Sixth Circuit struck
    down Tennessee's law regarding the teaching of "equal time" of evolution and creationism in public school science
    classes because it violated the Establishment clause of the US Constitution. Following this ruling, creationism was
    stripped of overt biblical references and renamed creation science, and several states passed legislative acts requiring
    that this be given equal time with the teaching of evolution.
    Creation Science
    As biologists grew more and more confident in evolution as the central defining principle of biology,[34] American
    membership in churches favoring increasingly literal interpretations of scripture rose, with the Southern Baptist
    Convention and Lutheran Church - Missouri Synod outpacing all other denominations.[35] With growth, these
    churches became better equipped to promulgate a creationist message, with their own colleges, schools, publishing
    houses, and broadcast media.[36]
    In 1961, the first major modern creationist book was published: Henry M. Morris and John C. Whitcomb Jr.'s The
    Genesis Flood. Morris and Whitcomb argued that creation was literally 6 days long, that humans lived concurrently
    with dinosaurs, and that God created each 'kind' of life individually.[37] On the strength of this, Morris became a
    popular speaker, spreading anti-evolutionary ideas at fundamentalist churches, colleges, and conferences.[38] Morris'
    Creation Science Research Center (CSRC) rushed publication of biology text books that promoted creationism, and
    also published other books such as Kelly Segrave's sensational Sons of God Return that dealt with UFOlogy, flood
    geology, and demonology against Morris' objections.[39] Ultimately, the CSRC broke up over a divide between
    sensationalism and a more intellectual approach, and Morris founded the Institute for Creation Research, which was
    promised to be controlled and operated by scientists.[40] During this time, Morris and others who supported flood
    geology adopted the terms scientific creationism and creation science.[41] The flood geologists effectively co-opted
    "the generic creationist label for their hyperliteralist views".[42]
Creation–evolution controversy                                                                                                        336
Court cases
    McLean v. Arkansas
    In 1982 another case in Arkansas ruled that the Arkansas "Balanced Treatment for Creation-Science and
    Evolution-Science Act" was unconstitutional because it violated the establishment clause of the U.S. Constitution.
    Much of the transcript of the case was lost, including evidence from Francisco Ayala.
    Edwards v. Aguillard
    In the early 1980s, the Louisiana legislature passed a law titled the "Balanced Treatment for Creation-Science and
    Evolution-Science in Public School Instruction Act". The act did not require teaching either evolution or creationism
    as such, but did require that when evolutionary science was taught, creation science had to be taught as well.
    Creationists had lobbied aggressively for the law, arguing that the act was about academic freedom for teachers, an
    argument adopted by the state in support of the act. Lower courts ruled that the State's actual purpose was to promote
    the religious doctrine of creation science, but the State appealed to the Supreme Court.
    In the similar case of McLean v. Arkansas (see above) the federal trial court had also decided against creationism.
    Mclean v. Arkansas however was not appealed to the federal Circuit Court of Appeals, creationists instead thinking
    that they had better chances with Edwards v. Aguillard. In 1987 the Supreme Court of the United States ruled that
    the Louisiana act was unconstitutional, because the law was specifically intended to advance a particular religion. At
    the same time, however, it stated in its opinion that "teaching a variety of scientific theories about the origins of
    humankind to school children might be validly done with the clear secular intent of enhancing the effectiveness of
    science instruction," leaving open the door for a handful of proponents of creation science to evolve their arguments
    into the iteration of creationism that came to be known as intelligent design.[43]
    Intelligent Design
    In response to Edwards v. Aguillard, the Neo-Creationist intelligent
    design movement was formed around the Discovery Institute's Center
    for Science and Culture. Its goal is to restate creationism in terms more
    likely to be well received by the public, policy makers, educators, and
    the scientific community, and makes the claim that "certain features of
    the universe and of living things are best explained by an intelligent
    cause, not an undirected process such as natural selection."[45] It has      The Discovery Institute's Center for the Renewal
    been viewed as a "scientific" approach to creationism by creationists,         of Science and Culture used banners based on
                                                                                 "The Creation of Adam" from the Sistine Chapel.
    but is widely rejected as unscientific by the science community —
                                                                                   Later it used a less religious image, then was
    primarily because intelligent design cannot be tested and rejected like                                                    [44]
                                                                                 renamed the Center for Science and Culture.
    scientific hypotheses (see for example, list of scientific societies
    rejecting intelligent design).
    The controversy continues to this day, with the mainstream scientific consensus on the origins and evolution of life
    challenged by creationist organizations and religious groups who desire to uphold some form of creationism (usually
    young earth creationism, creation science, old earth creationism or intelligent design) as an alternative. Most of these
    groups are explicitly Christian, and more than one sees the debate as part of the Christian mandate to evangelize.[46]
    Some see science and religion as being diametrically opposed views which cannot be reconciled. More
    accommodating viewpoints, held by many mainstream churches and many scientists, consider science and religion to
    be separate categories of thought, which ask fundamentally different questions about reality and posit different
    avenues for investigating it.[47] Public opinion in regards to the concepts of evolution, creationism, and intelligent
Creation–evolution controversy                                                                                                  337
    design is fluctuating.
    More recently, the Intelligent Design movement has taken an anti-evolution position which avoids any direct appeal
    to religion. Scientists argue that Intelligent design does not represent any research program within the mainstream
    scientific community, and is essentially creationism.[48] Its leading proponent, the Discovery Institute, made widely
    publicised claims that it was a new science, though the only paper arguing for it published in a scientific journal was
    accepted in questionable circumstances and quickly disavowed in the Sternberg peer review controversy, with the
    Biological Society of Washington stating that it did not meet the journal's scientific standards, was a "significant
    departure" from the journal's normal subject area and was published at the former editor's sole discretion, "contrary
    to typical editorial practices".[49] President Bush commented endorsing the teaching of Intelligent design alongside
    evolution "I felt like both sides ought to be properly taught ... so people can understand what the debate is about."[50]
Viewpoints
    Neo-Creationism
    Neo-Creationists intentionally distance themselves from other forms of creationism, preferring to be known as
    wholly separate from creationism as a philosophy. Their goal is to restate creationism in terms more likely to be well
    received by the public, education policy makers and the scientific community. It aims to re-frame the debate over the
    origins of life in non-religious terms and without appeals to scripture, and to bring the debate before the public.
    Neo-creationists may be either Young Earth or Old Earth Creationists, and hold a range of underlying theological
    viewpoints (e.g. on the interpretation of the Bible). Neo-Creationism currently exists in the form of the intelligent
    design movement, which has a 'big tent' strategy making it inclusive of many Young Earth Creationists (such as Paul
    Nelson and Percival Davis).
    Theistic evolution
    Theistic evolution is the general view that, instead of faith being in opposition to biological evolution, some or all
    classical religious teachings about God and creation are compatible with some or all of modern scientific theory,
    including, specifically, evolution. It generally views evolution as a tool used by a creator god, who is both the first
    cause and immanent sustainer/upholder of the universe; it is therefore well accepted by people of strong theistic (as
    opposed to deistic) convictions. Theistic evolution can synthesize with the day-age interpretation of the Genesis
    creation myth; however most adherents consider that the first chapters of Genesis should not be interpreted as a
    "literal" description, but rather as a literary framework or allegory.
    This position does not generally exclude the viewpoint of methodological naturalism, a long standing convention of
    the scientific method in science.
    Theistic evolutionists have frequently been prominent in opposing creationism (including intelligent design). Notable
    examples have been biologist Kenneth R. Miller and theologian John Haught, who testified for the plaintiffs in
    Kitzmiller v. Dover Area School District. Another example is the Clergy Letter Project, an organization that has
    created and maintains a statement signed by American Christian clergy of different denominations rejecting
    creationism, with specific reference to points raised by intelligent design proponents. Theistic evolutionists have also
    been active in Citizens Alliances for Science that oppose the introduction of creationism into public school science
    classes (one example being evangelical Christian geologist Keith B. Miller, who is a prominent board member of
    Kansas Citizens for Science).
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    Naturalistic evolution
    Naturalistic evolution is the position of acceptance of biological evolution and of metaphysical naturalism (and thus
    rejection of theism and theistic evolution). A prominent proponent of this viewpoint is British evolutionary biologist
    Richard Dawkins.
    Definitions
          Fact: In science, an observation that has been repeatedly confirmed and for all practical purposes is accepted
          as "true." Truth in science, however, is never final, and what is accepted as a fact today may be modified or
          even discarded tomorrow.
          Hypothesis: A tentative statement about the natural world leading to deductions that can be tested. If the
          deductions are verified, it becomes more probable that the hypothesis is correct. If the deductions are incorrect,
          the original hypothesis can be abandoned or modified. Hypotheses can be used to build more complex
          inferences and explanations.
          Law: A descriptive generalization about how some aspect of the natural world behaves under stated
          circumstances.
          Theory: In science, a well-substantiated explanation of some aspect of the natural world that can incorporate
          facts, laws, inferences, and tested hypotheses.
          —National Academy of Sciences, Science and Creationism[61]
    Falsifiability
    Philosopher of science Karl R. Popper set out the concept of falsifiability as a way to distinguish science and
    pseudoscience: Testable theories are scientific, but those that are untestable are not.[65] However, in Unended Quest,
    Popper declared "I have come to the conclusion that Darwinism is not a testable scientific theory but a metaphysical
    research programme, a possible framework for testable scientific theories," while pointing out it had "scientific
    character".[66]
    In what one sociologist derisively called "Popper-chopping,"[67] opponents of evolution seized upon Popper's
    definition to claim evolution was not a science, and claimed creationism was an equally valid metaphysical research
    program.[68] For example, Duane Gish, a leading Creationist proponent, wrote in a letter to Discover magazine (July
    1981): "Stephen Jay Gould states that creationists claim creation is a scientific theory. While many Creationists
    claim creation is a scientific theory other Creationists have stated that neither creation nor evolution is a scientific
    theory (and each is equally religious)."[69]
    Popper responded to news that his conclusions were being used by anti-evolutionary forces by affirming that
    evolutionary theories regarding the origins of life on earth were scientific because "their hypotheses can in many
    cases be tested."[70] However, creationists claimed that a key evolutionary concept, that all life on Earth is descended
    from a single common ancestor, was not mentioned as testable by Popper, and claimed it never would be.[71]
    In fact, Popper wrote admiringly of the value of Darwin's theory.[72] Only a few years later, Popper wrote, "I have in
    the past described the theory as "almost tautological"...I still believe that natural selection works in this way as a
    research programme. Nevertheless, I have changed my mind about the testability and logical status of the theory of
    natural selection; and I am glad to have an opportunity to make a recantation". His conclusion, later in the article is
    "The theory of natural selection may be so formulated that it is far from tautological. In this case it is not only
    testable, but it turns out to be not strictly universally true."[73]
    Debate among some scientists and philosophers of science on the applicability of falsifiability in science
    continues.[74] However, simple falsifiability tests for common descent have been offered by some scientists: For
    instance, biologist and prominent critic of creationism Richard Dawkins and J.B.S. Haldane both pointed out that if
    fossil rabbits were found in the Precambrian era, a time before most similarly complex lifeforms had evolved, "that
    would completely blow evolution out of the water."[75] [76]
    Falsifiability has also caused problems for creationists: In his 1982 decision McLean v. Arkansas Board of
    Education, Judge William R. Overton used falsifiability as one basis for his ruling against the teaching of creation
    science in the public schools, ultimately declaring it "simply not science."[77]
Creation–evolution controversy                                                                                                   341
    Appeal to consequences
    A number of creationists have blurred the boundaries between their disputes over the truth of the underlying facts,
    and explanatory theories, of evolution, with their purported philosophical and moral consequences. This type of
    argument is known as an appeal to consequences, and is a logical fallacy. Examples of these arguments include those
    of prominent creationists such as Ken Ham[78] and Henry M. Morris.[79]
    Biology
    Disputes relating to evolutionary
    biology are central to the controversy
    between Creationists and the scientific
    community.       The       aspects   of
    evolutionary biology disputed include
    common descent (and particularly
    human evolution from common
    ancestors with other members of the
    Great Apes), macroevolution, and the
    existence of transitional fossils.
Common descent
    Human evolution
    Human evolution is the study of the biological evolution of humans as a distinct species from its common ancestors
    with other animals. Analysis of fossil evidence and genetic distance are two of the means by which scientists
    understand this evolutionary history.
    Fossil evidence suggests that humans' earliest hominoid ancestors may have split from other primates as early as the
    late Oligocene, circa 26-24 Ma, and that by the early Miocene, the adaptive radiation of many different hominoid
    forms was well underway.[85] Evidence from the molecular dating of genetic differences indicates that the gibbon
    lineage (family Hylobatidae) diverged between 18 and 12 Ma, and the orangutan lineage (subfamily Ponginae)
    diverged about 12 Ma. While there is no fossil evidence thus far clearly documenting the early ancestry of gibbons,
    fossil proto-orangutans may be represented by Sivapithecus from India and Griphopithecus from Turkey, dated to
    around 10 Ma. Molecular evidence further suggests that between 8 and 4 Ma, first the gorillas, and then the
    chimpanzee (genus Pan) split from the line leading to the humans.[86] We have no fossil record of this divergence,
    but distinctively hominid fossils have been found dating to 3.2 Ma (see Lucy) and possibly even earlier, at 6 or 7 Ma
    (see Toumaï).[87] Comparisons of chimpanzee and human DNA show the two are approximately 98.4 percent
    identical, and are taken as strong evidence of recent common ancestry.[88] Today, only one distinct human species
    survives, but many earlier species have been found in the fossil record, including Homo erectus, Homo habilis, and
    Homo neanderthalensis.
    Creationists dispute there is evidence of shared ancestry in the fossil evidence, and argue either that these are
    misassigned ape fossils (e.g. that Java man was a gibbon[89] ) or too similar to modern humans to designate them as
    distinct or transitional forms.[90] However Creationists frequently disagree where the dividing lines would be.[91]
    Creation myths (such as the Book of Genesis) frequently posit a first man (Adam, in the case of Genesis) as an
    alternative viewpoint to the scientific account.
    Creationists also dispute science's interpretation of genetic evidence in the study of human evolution. They argue that
    it is a "dubious assumption" that genetic similarities between various animals imply a common ancestral relationship,
    and that scientists are coming to this interpretation only because they have preconceived notions that such shared
    relationships exist. Creationists also argue that genetic mutations are strong evidence against evolutionary theory
    because the mutations required for major changes to occur would almost certainly be detrimental.[31]
    Macroevolution
    Many creationists now accept the possibilities of microevolution within "kinds" but refuse to accept and have long
    argued against the possibility of macroevolution. Macroevolution is defined by the scientific community to be
    evolution that occurs at or above the level of species. Under this definition, macroevolution can be considered to be a
    fact, as evidenced by observed instances of speciation. Creationists however tend to apply a more restrictive, if
    vaguer, definition of macroevolution, often relating to the emergence of new body forms or organs. The scientific
    community considers that there is strong evidence for even such more restrictive definitions, but the evidence for this
    is more complex.
    Recent arguments against (such restrictive definitions of) macroevolution include the intelligent design arguments of
    irreducible complexity and specified complexity. However, neither argument has been accepted for publication in a
    peer-reviewed scientific journal, and both arguments have been rejected by the scientific community as
    pseudoscience. Further when taken to court in attempt to introduce ID into the classroom, the judge wrote "The
    overwhelming evidence at trial established that ID is a religious view, a mere re-labeling of creationism, and not a
    scientific theory."
    Biologist Richard Dawkins published a book 'The Greatest Show on Earth: The Evidence for Evolution' giving
    evidence for evolution and Macroevolution.
Creation–evolution controversy                                                                                                    343
    Transitional fossils
    It is commonly stated by critics of evolution that there are no known transitional fossils.[92] [93] This position is based
    on a misunderstanding of the nature of what represents a transitional feature. A common creationist argument is that
    no fossils are found with partially functional features. It is plausible, however, that a complex feature with one
    function can adapt a wholly different function through evolution. The precursor to, for example, a wing, might
    originally have only been meant for gliding, trapping flying prey, and/or mating display. Nowadays, wings can still
    have all of these functions, but they are also used in active flight.
    As another example, Alan Haywood stated in Creation and
    Evolution that "Darwinists rarely mention the whale because it
    presents them with one of their most insoluble problems. They
    believe that somehow a whale must have evolved from an
    ordinary land-dwelling animal, which took to the sea and lost
    its legs ... A land mammal that was in the process of becoming
    a whale would fall between two stools—it would not be fitted
                                                                          Reconstruction of Ambulocetus natans
    for life on land or at sea, and would have no hope for
    survival."[94] The evolution of whales has however been
    documented in considerable detail, with Ambulocetus, described as looking like a three-metre long mammalian
    crocodile, as one of the transitional fossils.
    Although transitional fossils elucidate the evolutionary transition of one life-form to another, they only exemplify
    snapshots of this process. Due to the special circumstances required for preservation of living beings, only a very
    small percentage of all life-forms that ever have existed can be expected to be discovered. Thus, the transition itself
    can only be illustrated and corroborated by transitional fossils, but it will never be known in detail. However,
    progressing research and discovery managed to fill in several gaps and continues to do so. Critics of evolution often
    cite this argument as being a convenient way to explain off the lack of 'snapshot' fossils that show crucial steps
    between species.
    The theory of punctuated equilibrium developed by Stephen Jay Gould and Niles Eldredge is often mistakenly drawn
    into the discussion of transitional fossils. This theory, however, pertains only to well-documented transitions within
    taxa or between closely related taxa over a geologically short period of time. These transitions, usually traceable in
    the same geological outcrop, often show small jumps in morphology between periods of morphological stability. To
    explain these jumps, Gould and Eldredge envisaged comparatively long periods of genetic stability separated by
    periods of rapid evolution. For example the change from a creature the size of a mouse, to one the size of an
    elephant, could be accomplished over 60,000 years, with a rate of change too small to be noticed over any human
    lifetime. 60,000 years is too small a gap to be identified or identifiable in the fossil record.[95]
    Furthermore, promoters of evolution (such as Richard Dawkins) have pointed out that, even if it were possible for
    enough fossils to survive to show a close transitional change, evolution's critics will never be satisfied, as the
    discovery of one "missing link" itself creates two more so-called "missing links" on either side of the discovery.
    Dawkins goes on to say that the reason for this "losing battle" is that many of these critics are theists who "simply
    don't want to see the truth".
    Geology
    Many believers in Young Earth Creationism – a position held by the majority of proponents of Flood Geology –
    accept biblical chronogenealogies (such as the Ussher chronology which in turn is based on the Masoretic version of
    the Genealogies of Genesis).[96] [97] They believe that God created the universe approximately 6000 years ago, in the
    space of six days. Much of creation geology is devoted to debunking the dating methods used in anthropology,
    geology, and planetary science that give ages in conflict with the young Earth idea. In particular, creationists dispute
    the reliability of radiometric dating and isochron analysis, both of which are central to mainstream geological
Creation–evolution controversy                                                                                                344
    theories of the age of the Earth. They usually dispute these methods based on uncertainties concerning initial
    concentrations of individually considered species and the associated measurement uncertainties caused by diffusion
    of the parent and daughter isotopes. However, a full critique of the entire parameter-fitting analysis, which relies on
    dozens of radionuclei parent and daughter pairs, has not been done by creationists hoping to cast doubt on the
    technique.
    The consensus of professional scientific organisations worldwide is that no scientific evidence contradicts the age of
    approximately 4.5 billion years.[98] Young Earth creationists reject these ages on the grounds of what they regard as
    being tenuous and untestable assumptions in the methodology. Apparently inconsistent radiometric dates are often
    quoted to cast doubt on the utility and accuracy of the method. Mainstream proponents who get involved in this
    debate point out that dating methods only rely on the assumptions that the physical laws governing radioactive decay
    have not been violated since the sample was formed (harking back to Lyell's doctrine of uniformitarianism). They
    also point out that the "problems" that creationists publicly mentioned can be shown to either not be problems at all,
    are issues with known contamination, or simply the result of incorrectly evaluating legitimate data.
Other sciences
    Cosmology
    Whilst Young Earth Creationists believe that the Universe was created by the Judeo-Chrisitian God approximately
    6000 years ago, the current scientific consensus is that the Universe as we know it emerged from the Big Bang 13.7
    billion years ago. The recent science of nucleocosmochronology is extending the approaches used for Carbon-14
    dating to the dating of astronomical features. For example based upon this emerging science, the Galactic thin disk
    of the Milky Way galaxy is estimated to have been formed 8.3 ± 1.8 billion years ago.[99]
    Old Earth Creationists and some others do not necessarily dispute these figures.
    Nuclear physics
    Creationists point to experiments they have performed, which they claim demonstrate that 1.5 billion years of
    nuclear decay took place over a short period of time, from which they infer that "billion-fold speed-ups of nuclear
    decay" have occurred, a massive violation of the principle that radioisotope decay rates are constant, a core principle
    underlying nuclear physics generally, and radiometric dating in particular.[100]
    The scientific community points to numerous flaws in these experiments, to the fact that their results have not been
    accepted for publication by any peer-reviewed scientific journal, and to the fact that the creationist scientists
    conducting them were untrained in experimental geochronology.[101] [102]
    In refutation of young-Earth claims of inconstant decay rates affecting the reliability of radiometric dating, Roger C.
    Wiens, a physicist specialising in isotope dating states:
          There are only three quite technical instances where a half-life changes, and these do not affect the dating
          methods [under discussion]":[103]
       1. Only one technical exception occurs under terrestrial conditions, and this is not for an isotope used for dating.
          ... The artificially-produced isotope, beryllium-7 has been shown to change by up to 1.5%, depending on its
          chemical environment. ... [H]eavier atoms are even less subject to these minute changes, so the dates of rocks
          made by electron-capture decays would only be off by at most a few hundredths of a percent.
       2. ... Another case is material inside of stars, which is in a plasma state where electrons are not bound to atoms.
          In the extremely hot stellar environment, a completely different kind of decay can occur. 'Bound-state beta
          decay' occurs when the nucleus emits an electron into a bound electronic state close to the nucleus. ... All
          normal matter, such as everything on Earth, the Moon, meteorites, etc. has electrons in normal positions, so
          these instances never apply to rocks, or anything colder than several hundred thousand degrees. ...
Creation–evolution controversy                                                                                                     345
       3. The last case also involves very fast-moving matter. It has been demonstrated by atomic clocks in very fast
          spacecraft. These atomic clocks slow down very slightly (only a second or so per year) as predicted by
          Einstein's theory of relativity. No rocks in our solar system are going fast enough to make a noticeable change
          in their dates. ...
          —Roger C. Wiens, Radiometric Dating, A Christian Perspective[104]
Misrepresentations of science
    Quote mining
    As a means to criticise mainstream science, creationists have been known to quote, at length, scientists who
    ostensibly support the mainstream theories, but appear to acknowledge criticisms similar to those of creationists.[105]
    However, almost universally these have been shown to be quote mines that do not accurately reflect the evidence for
    evolution or the mainstream scientific community's opinion of it, or highly out-of-date.[106] [107] Many of the same
    quotes used by creationists have appeared so frequently in Internet discussions due to the availability of cut and paste
    functions, that the TalkOrigins Archive has created "The Quote Mine Project" for quick reference to the original
    context of these quotations.[106]
    Science education
    Creationists promote that evolution is a theory in crisis[108] [109] with scientists criticizing evolution[110] and claim
    that fairness and equal time requires educating students about the alleged scientific controversy.
    Opponents, being the overwhelming majority of the scientific community and science education organizations,[111]
    reply that there is no scientific controversy and that the controversy exists solely in terms of religion and politics.[108]
    [110]
          The American Association for the Advancement of Science and other science and education professional
    organizations say that Teach the Controversy proponents seek to undermine the teaching of evolution[108] [112] while
    promoting intelligent design,[113] [114] [115] and to advance an education policy for US public schools that introduces
    creationist explanations for the origin of life to public-school science curricula.[116] [117] This viewpoint was
    supported by the December 2005 ruling in the Kitzmiller v. Dover Area School District trial.[117]
    George Mason University Biology Department introduced a course on the creation/evolution controversy, and
    apparently as students learn more about biology, they find objections to evolution less convincing, suggesting that
    “teaching the controversy” rightly as a separate elective course on philosophy or history of science, or "politics of
    science and religion," would undermine creationists’ criticisms, and that the scientific community’s resistance to this
    approach was bad public relations.[118]
    On March 27, 2009, the Texas Board of Education, by a vote of 13 to 2, voted that at least in Texas, textbooks must
    teach intelligent design alongside evolution, and question the validity of the fossil record. Don McLeroy, a dentist
    and chair of the board, said, "I think the new standards are wonderful ... dogmatism about evolution" has sapped
    "America's scientific soul." According to Science magazine, "Because Texas is the second-largest textbook market in
    the United States, publishers have a strong incentive to be certified by the board as 'conforming 100% to the state's
    standards'."[119]
Creation–evolution controversy                                                                                                     346
    Freedom of speech
    Creationists have claimed that preventing them from teaching Creationism violates their right of Freedom of speech.
    However court cases (such as Webster v. New Lenox School District and Bishop v. Aronov) have upheld school
    districts' and universities' right to restrict teaching to a specified curriculum.
    Debates
    Many creationists and scientists engage in frequent public debates regarding the origin of human life, hosted by a
    variety of institutions. However, some scientists disagree with this tactic, arguing that by openly debating supporters
    of supernatural origin explanations (creationism and intelligent design), scientists are lending credibility and
    unwarranted publicity to creationists, which could foster an inaccurate public perception and obscure the factual
    merits of the debate.[125] For example, in May 2004 Dr. Michael Shermer debated creationist Kent Hovind in front of
    a predominantly creationist audience. In Shermer's online reflection while he was explaining that he won the debate
    with intellectual and scientific evidence he felt it was "not an intellectual exercise," but rather it was "an emotional
    drama", with scientists arguing from "an impregnable fortress of evidence that converges to an unmistakable
    conclusion", whilst for creationists it is "a spiritual war".[126] While receiving positive responses from creationist
    observers, Shermer concluded "Unless there is a subject that is truly debatable (evolution v. creation is not), with a
Creation–evolution controversy                                                                                                 347
    format that is fair, in a forum that is balanced, it only serves to belittle both the magisterium of science and the
    magisterium of religion."[126] (see: scientific method). Others, like evolutionary biologist Massimo Pigliucci, have
    debated Hovind, and have expressed surprise to hear Hovind try "to convince the audience that evolutionists believe
    humans came from rocks" and at Hovind's assertion that biologists believe humans "evolved from bananas."[127]
    Eugenie Scott of the National Center for Science Education, a non-profit organization dedicated to defending the
    teaching of evolution in the public schools, claimed debates are not the sort of arena to promote science to
    creationists.[126] Scott says that "Evolution is not on trial in the world of science," and "the topic of the discussion
    should not be the scientific legitimacy of evolution" but rather should be on the lack of evidence in creationism.
    Stephen Jay Gould adopted a similar position, explaining:
          Debate is an art form. It is about the winning of arguments. It is not about the discovery of truth. There are
          certain rules and procedures to debate that really have nothing to do with establishing fact — which
          [creationists] are very good at. Some of those rules are: never say anything positive about your own position
          because it can be attacked, but chip away at what appear to be the weaknesses in your opponent's position.
          They are good at that. I don't think I could beat the creationists at debate. I can tie them. But in courtrooms
          they are terrible, because in courtrooms you cannot give speeches. In a courtroom you have to answer direct
          questions about the positive status of your belief.
          —Stephen Jay Gould, lecture 1985[128]
    Political lobbying
    A wide range of organisations, on both sides of the controversy, are involved in lobbying in an attempt to influence
    political decisions relating to the teaching of evolution, at a number of levels. These include the Discovery Institute,
    the National Center for Science Education, the National Science Teachers Association, state Citizens Alliances for
    Science, and numerous national science associations and state Academies of Science.[129]
    In the media
    The controversy has been discussed in numerous newspaper articles, reports, op-eds and letters to the editor, as well
    as a number of radio and television programmes (including the PBS series, Evolution and Coral Ridge Ministries'
    Darwin's Deadly Legacy). This has led some commentators to express a concern at what they see as a highly
    inaccurate and biased understanding of evolution among the general public. Edward Humes states:
          There are really two theories of evolution. There is the genuine scientific theory and there is the talk-radio
          pretend version, designed not to enlighten but to deceive and enrage. The talk-radio version had a packed town
          hall up in arms at the Why Evolution Is Stupid lecture. In this version of the theory, scientists supposedly
          believe that all life is accidental, a random crash of molecules that magically produced flowers, horses and
          humans – a scenario as unlikely as a tornado in a junkyard assembling a 747. Humans come from monkeys in
          this theory, just popping into existence one day. The evidence against Darwin is overwhelming, the purveyors
          of talk-radio evolution rail, yet scientists embrace his ideas because they want to promote atheism.
          —Edward Humes, Unintelligent Designs on Darwin[130]
Creation–evolution controversy                                                                                                 348
    Europe
    Europeans have often regarded the
    creation-evolution controversy as an
    American matter.[134] However, in
    recent years the conflict has become an
    issue in a variety of countries including
    Germany, the United Kingdom, Italy,
    the     Netherlands,        Poland,   and
    Serbia.[134] [135] [136] [137]
    Australia
    With declining church attendance, there has been some growth in fundamentalist and Pentecostal Christian
    denominations.[139] Under the former Queensland state government of Joh Bjelke-Petersen, in 1980 lobbying was so
    successful that Queensland allowed the teaching of creationism as science to school children. In 2010 the
    Queensland state government introduced the topic of creationism into school classes within the "ancient history"
    subject where its origins and nature are discussed as a significant controversy.[140] Public lectures have been given in
    rented rooms at Universities, by visiting American speakers, and speakers with doctorates purchased by mail from
    Florida sites.[141] One of the most acrimonious aspects of the Australian debate was featured on the science
    television program Quantum, about a long-running and ultimately unsuccessful court case by Ian Plimer, Professor
    of Geology at Melbourne University, against an ordained minister, Dr. Allen Roberts, who had claimed that there
    were remnants of Noah's Ark in eastern Turkey. Although the court found that Dr Roberts had made false and
    misleading claims, they were not made in the course of trade or commerce, so the case failed.[142]
Creation–evolution controversy                                                                                                                             349
    Islamic countries
    In recent times, the controversy has become more prominent in Islamic countries.[143] Currently, in Egypt evolution
    is taught in schools but Saudi Arabia and Sudan have both banned the teaching of evolution in schools.[133] Creation
    science has also been heavily promoted in Turkey and in immigrant communities in Western Europe, primarily by
    Harun Yahya.[135]
    See also
    •   Abiogenesis
    •   Allegorical interpretations of Genesis
    •   Anti-intellectualism
    •   Biogenesis
    •   Clergy Letter Project
    •   Creation science
    •   Creationism
    •   Evidence of common descent
    •   Evolution and the Roman Catholic Church
    •   Evolution Sunday
    •   Evolutionary origin of religions
    •   Hindu views on evolution
    •   History of the creation-evolution controversy
    •   Intelligent design
    •   Jainism and non-creationism
    •   Jewish views on evolution
    •   Level of support for evolution
    •   List of participants in the creation-evolution controversy
    •   Mormonism and evolution
    •   Natural theology
    •   Objections to evolution
    •   Politics of creationism
    •   Project Steve
    •   Relationship between religion and science
    •   Teach the Controversy
    •   Theology of creationism and evolution
    Notes
    [144]
        Everson v. Board of Education (seminal U.S. Supreme Court opinion finally applying the Establishment Clause against states in 1947). See
        also Book Review (http:/ / volokh. com/ posts/ 1122414938. shtml) of Professor Larson's Pulitzer Prize winning Summer for the Gods at point
        4 ("The constitutional case was largely based on state constitutional law; this was before most of the Bill of Rights had been incorporated and
        applied to the states."); Cantwell v. Connecticut (1940 Supreme Court case stating that the Free Exercise Clause of the First Amendment is
        incorporated into the Fourteenth Amendment and is therefore applicable against the states); Cookson, Catharine (2003). Encyclopedia of
        religious freedom. Taylor & Francis. pp. 132 et seq.. ISBN 0415941814.(explaining incorporation doctrine relative to First Amendment);
        Incorporation Doctrine Explained (http:/ / www. crf-usa. org/ bill-of-rights-in-action/ bria-7-4-b. html) by Constitutional Rights Foundation.
    [27] The Court accordingly did not address the question of whether the teaching of Creationism in the public schools was unconstitutional.
    [28] The Court stated in its opinion that "England and Scotland maintained State churches as did some of the Colonies, and it was intended by
        this clause of the Constitution [the Religious Preference Clause] to prevent any such undertaking in Tennessee."
    [29] See:
       •   s:Kitzmiller v. Dover Area School District/2:Context#Page 19 of 139;
       •   Understanding the Intelligent Design Creationist Movement: Its True Nature and Goals. (http:/ / www. centerforinquiry. net/ uploads/
           attachments/ Forrest_Paper. pdf) (pdf) A Position Paper from the Center for Inquiry, Office of Public Policy Barbara Forrest. May, 2007;
        • TalkOrigins Archive: Post of the Month: March 2006 (http:/ / www. talkorigins. org/ origins/ postmonth/ mar06. html), The History of
           Creationism by Lenny Flank.
    [30] Timeline and Myths of Scopes Trial (http:/ / www. antievolution. org/ topics/ law/ scopes/ scopes. html)
    [31] Nelkin, Dorothy (2000). The Creation Controversy: Science or Scripture in Schools. New York: iUniverse. pp. 242. ISBN 0-595-00194-7.
    [32] Epperson et al. v. Arkansas, 393 U.S. 97 (http:/ / caselaw. lp. findlaw. com/ scripts/ getcase. pl?navby=CASE& court=US& vol=393&
        page=97) (U.S. Supreme Court 1968-11-12).
    [33] Larson, Edward J. (2003). Trial and Error: The American Controversy Over Creation and Evolution. Oxford University Press. pp. 276.
        ISBN 0195154703.
    [34] Larson 2004, p. 248,250, see also Dobzhansky 1973
    [35] Larson 2004, p. 251
    [36] Larson 2004, p. 252
    [37] Larson 2004, p. 255,Numbers 1992, pp. xi,200–208
    [38] Larson 2004, p. 255
    [39] Numbers 1992, pp. 284–285
    [40] Numbers 1992, pp. 284–6
    [41] Quoting Larson 2004, pp. 255–256: "Fundamentalists no longer merely denounced Darwinism as false; they offered a scientific-sounding
        alternative of their own, which they called either 'scientific creationism (as distinct from religious creationism) or 'creation science' (as
        opposed to evolution science."
    [42] Larson 2004, pp. 254–255, Numbers 1998, pp. 5–6
    [43] Ruling, Kitzmiller v. Dover Area School District pp 7-9.
    [44] "NCSE Resource" (http:/ / ncse. com/ creationism/ general/ evolving-banners-at-discovery-institute). Evolving Banners at the Discovery
        Institute. 2002-08-29. . Retrieved 2009-04-07.
    [45] "Top Questions-1.What is the theory of intelligent design?" (http:/ / www. discovery. org/ csc/ topQuestions.
        php#questionsAboutIntelligentDesign). Discovery Institute. . Retrieved 2007-05-13..
    [46] Verderame 2007,Simon 2006
    [47] Dewey 1994, p. 31, and Wiker 2003, summarizing Gould.
    [48] Larson 2004, p. 258 "Virtually no secular scientists accepted the doctrines of creation science; but that did not deter creation scientists from
        advancing scientific arguments for their position." See also Martz & McDaniel 1987, p. 23, a Newsweek article which states "By one count
        there are some 700 scientists (out of a total of 480,000 U.S. earth and life scientists) who give credence to creation-science, the general theory
        that complex life forms did not evolve but appeared 'abruptly'."
    [49] Statement from the Council of the Biological Society of Washington (http:/ / web. archive. org/ web/ 20070926214521/ http:/ / www.
        biolsocwash. org/ id_statement. html) at the Wayback Machine (archived September 26, 2007).
    [50] Bumiller 2005, Peters & Hewlett 2005, p. 3
    [51] Some question group's move with elections nearing (http:/ / www. 6newslawrence. com/ news/ 2006/ jul/ 07/
        many_question_groups_move_elections_nearing/ ) 6News Lawrence, Lawrence Journal-World. 7 July 2006.
    [52] Evolution’s foes lose ground in Kansas (http:/ / www. msnbc. msn. com/ id/ 14137751/ ) MSNBC, 2 August 2006.
    [53] Evolution of Kansas science standards continues as Darwin's theories regain prominence (http:/ / www. iht. com/ articles/ ap/ 2007/ 02/ 13/
        america/ NA-GEN-US-Kansas-Evolution-History. php) The Associated Press, via the International Herald Tribune, 13 February 2007.
    [54] The "Evolution" of Creationism (http:/ / www. pfaw. org/ pfaw/ general/ default. aspx?oid=20418& print=yes& units=all) Timeline: how
        creationism has "evolved". People for the American Way.
    [55] Kitzmiller v. Dover Area School District, 04 cv 2688 (December 20, 2005)., Conclusion of Ruling.
    [56] Johnson 1998, Hodge 1874, p. 177, Wiker 2003, Peters & Hewlett 2005, p. 5--Peters and Hewlett argue that the atheism of many
        evolutionary supporters must be removed from the debate
    [57] Lenski 2000, p. Conclusions
    [58] Johnson 1998
Creation–evolution controversy                                                                                                                              352
    13. Belief in special creation has a salutary influence on mankind, since it encourages responsible obedience to the
    Creator and considerate recognition of those who were created by Him. ...
    16. Belief in evolution and animal kinship leads normally to selfishness, aggressiveness, and fighting between
    groups, as well as animalistic attitudes and behaviour by individuals." Henry M. Morris, The Remarkable Birth of
    Planet Earth (Creation-Life Publishers, 1972), pp. vi-viii. Cited in Appeal to Consequences (http:/ / www.
    fallacyfiles.org/adconseq.html), Fallacy Files
    [80] Johnson 1993, p. 69 where Johnson cites three pages spent in Issac Asimov's New Guide to Science that take creationists to task, while only
        spending one half page on evidence of evolution.
    [81] Evolution: what's the real controversy? (http:/ / arstechnica. com/ journals/ science. ars/ 2008/ 05/ 07/ evolution-whats-the-real-controversy),
        John Timmer, Nobel Intent, 7 May 2008
    [82] The Discontinuity of Life (http:/ / www. answersingenesis. org/ articles/ am/ v4/ n1/ discontinuity), Kurt Wise, Answers in Genesis
    [83] A Primer on the Tree of Life (http:/ / www. discovery. org/ a/ 10651), Casey Luskin, Center for Science and Culture, Discovery Institute
    [84] Evolution versus the People (http:/ / www. icr. org/ article/ evolution-versus-people/ ), Henry M. Morris, Institute for Creation Research
Creation–evolution controversy                                                                                                                                 353
    [85] Stringer, Chris; Andrews, Peter (2005). The complete world of human evolution. London: Thames & Hudson. pp. 240. ISBN 0-500-05132-1.
    [86] Relethford, John (2003). Reflections of our past: how human history is revealed in our genes. Boulder, Colo: Westview Press. pp. 257.
        ISBN 0-8133-3958-8.
    [87] "Toumaï the Human Ancestor: Skull of Oldest Known Hominid Unearthed in Chad" (http:/ / www. npr. org/ programs/ atc/ features/ 2002/
        july/ toumai/ index. html). NPR: All Things Considered. . Retrieved 2009-02-21.
    [88] Chimps are human, gene study implies (http:/ / www. newscientist. com/ article/ dn3744-chimps-are-human-gene-study-implies. html) New
        Scientist, website, 19 May 2003
    [89] Was Java Man a gibbon? (http:/ / www. talkorigins. org/ faqs/ homs/ gibbon. html), Jim Foley, TalkOrigins website, 30 April 2003.
    [90] See disputes over the classification of Neanderthals in The Counter-Creationism Handbook, Mark Isaak, University of California Press
        (2007), ISBN 978-0520249264
    [91] Comparison of all skulls (http:/ / www. talkorigins. org/ faqs/ homs/ compare. html), Jim Foley, TalkOrigins website, 8 August 2005.
    [92] Scientific Creationism, Henry M. Morris, 1985, pp. 78-90
    [93] Life—How Did It Get Here?, Watchtower Bible and Tract Society, 1985, pp. 57-59
    [94] Haywood, Alan (1985) Creation and Evolution.Triangle Books, London. Quoted in Hooking Leviathan by Its Past (http:/ / www.
        stephenjaygould. org/ library/ gould_leviathan. html), Stephen Jay Gould
    [95] Exploring the Way Life Works, Mahlon B. Hoagland, Bert Dodson, Judith Hauck, p298
    [96] Biblical chronogenealogies (http:/ / www. answersingenesis. org/ tj/ v17/ i3/ chronogenealogies. asp)
    [97] The Meaning of the Chronogenealogies of Genesis 5 and 11 (http:/ / www. grisda. org/ origins/ 07053. htm)
    [98] IAP Statement on the Teaching of Evolution (http:/ / www. interacademies. net/ Object. File/ Master/ 6/ 150/ Evolution statement. pdf),
        Interacademy Panel on Global Issues, 21 June 2006.
    [99] Del Peloso, E.F.; Da Silva, L.; De Mello, G.F.P.; Arany-prado, L.I. (2005). "The age of the Galactic thin disk from Th/Eu
        nucleocosmochronology". A&A 434: 301–308. doi:10.1051/0004-6361:20047060.
    [100] Nuclear Decay: Evidence For A Young World (http:/ / www. icr. org/ index. php?module=articles& action=view& ID=302), D. Russell
       Humphreys, Impact, Number 352, October 2002.
    [101] Young-Earth Creationist Helium Diffusion "Dates" Fallacies Based on Bad Assumptions and Questionable Data (http:/ / www. talkorigins.
       org/ faqs/ helium/ zircons. html), Kevin R. Henke, TalkOrigins website, Original version: 17 March 2005, Revision: 24 November 2005.
    [102] R.A.T.E: More Faulty Creation Science from The Institute for Creation Research (http:/ / gondwanaresearch. com/ rate. htm), J. G. Meert,
       Gondwana Research, The Official Journal of the International Association for Gondwana, 13 November 2000 (updated 6 February 2003).
    [103] Dating methods discussed were potassium-argon dating, argon-argon dating, rubidium-strontium dating, samarium-neodymium dating,
       lutetium-hafnium, rhenium-osmium dating, and uranium-lead dating.
    [104] Radiometric Dating, A Christian Perspective (http:/ / www. asa3. org/ ASA/ resources/ Wiens. html#page 20), Roger C. Wiens, American
       Scientific Affiliation, p20-21
    [105] Dobzhansky 1973
    [106] Pieret 2006
       •   Isaak, Mark (2004). "Index to Creationist Claims: Claim CA113" (http:/ / www. talkorigins. org/ indexcc/ CA/ CA113. html). Talk.origins.
           . Retrieved 2007-12-27.
       • Dunford, Mike (2007-07-02). "A new (mis)take on an old paper (and other posts)" (http:/ / web. archive. org/ web/ 20071209204412/
           http:/ / www. pandasthumb. org/ archives/ quote_mines/ ). The Panda's Thumb (blog). Archived from the original (http:/ / www.
           pandasthumb. org/ archives/ quote_mines/ ) on 2007-12-09. . Retrieved 2007-12-26.
       • Myers, PZ (2004-09-11). "I'm shocked, shocked to find that quote mining is going on in there!" (http:/ / pharyngula. org/ index/ weblog/
           comments/ im_shocked_shocked_to_find_that_quote_mining_is_going_on_in_there). Pharyngula. . Retrieved 2007-12-27.
    [108] "Some bills seek to discredit evolution by emphasizing so-called "flaws" in the theory of evolution or "disagreements" within the scientific
       community. Others insist that teachers have absolute freedom within their classrooms and cannot be disciplined for teaching non-scientific
       "alternatives" to evolution. A number of bills require that students be taught to "critically analyze" evolution or to understand "the
       controversy." But there is no significant controversy within the scientific community about the validity of the theory of evolution. The current
       controversy surrounding the teaching of evolution is not a scientific one." AAAS Statement on the Teaching of Evolution (http:/ / www. aaas.
       org/ news/ releases/ 2006/ pdf/ 0219boardstatement. pdf) American Association for the Advancement of Science. 16 February 2006 (PDF file)
    [109] Ruling, Kitzmiller v. Dover Area School District, page 89
    [110] "That this controversy is one largely manufactured by the proponents of creationism and intelligent design may not matter, and as long as
       the controversy is taught in classes on current affairs, politics, or religion, and not in science classes, neither scientists nor citizens should be
       concerned." Intelligent Judging — Evolution in the Classroom and the Courtroom (http:/ / content. nejm. org/ cgi/ content/ full/ 354/ 21/ 2277)
       George J. Annas, New England Journal of Medicine, Volume 354:2277-25 May 2281 2006
    [111] See: 1) List of scientific societies rejecting intelligent design 2) Kitzmiller v. Dover page 83. The Discovery Institute's Dissent From
       Darwin Petition (http:/ / www. dissentfromdarwin. org/ ) has been signed by about 500 scientists. The AAAS, the largest association of
       scientists in the U.S., has 120,000 members, and firmly rejects intelligent design and denies that there is a legitimate scientific controversy
       (http:/ / www. aaas. org/ news/ releases/ 2002/ 1106id2. shtml). More than 70,000 Australian scientists and educators condemn teaching of
       intelligent design in school science classes (http:/ / www. science. unsw. edu. au/ news/ 2005/ intelligent. html). Statements from Scientific
       Organizations (http:/ / ncse. com/ media/ voices/ science) on the status intelligent design and other forms of creationism.
Creation–evolution controversy                                                                                                                               354
    [112] "In summary, the disclaimer singles out the theory of evolution for special treatment, misrepresents its status in the scientific community,
       causes students to doubt its validity without scientific justification, presents students with a religious alternative masquerading as a scientific
       theory, directs them to consult a creationist text as though it were a science resource, and instructs students to forgo scientific inquiry in the
       public school classroom and instead to seek out religious instruction elsewhere." Ruling - disclaimer, pg. 49 Kitzmiller v. Dover Area School
       District.
    [113] "ID's home base is the Center for Science and Culture at Seattle's conservative Discovery Institute. Meyer directs the center; former Reagan
       adviser Bruce Chapman heads the larger institute, with input from the Christian supply-sider and former American Spectator owner George
       Gilder (also a Discovery senior fellow). From this perch, the ID crowd has pushed a "teach the controversy" approach to evolution that closely
       influenced the Ohio State Board of Education's recently proposed science standards, which would require students to learn how scientists
       "continue to investigate and critically analyze" aspects of Darwin's theory." Chris Mooney. The American Prospect. 2 December 2002
       Survival of the Slickest: How anti-evolutionists are mutating their message (http:/ / www. prospect. org/ print/ V13/ 22/ mooney-c. html)
    [114] Teaching Intelligent Design: What Happened When? (http:/ / www. arn. org/ docs/ dembski/ wd_teachingid0201. htm) by William A.
       Dembski"The clarion call of the intelligent design movement is to "teach the controversy." There is a very real controversy centering on how
       properly to account for biological complexity (cf. the ongoing events in Kansas), and it is a scientific controversy."
    [115] Nick Matzke's analysis shows how teaching the controversy using the Critical Analysis of Evolution model lesson plan is a means of
       teaching all the intelligent design arguments without using the intelligent design label. No one here but us Critical Analysis-ists... (http:/ /
       www. pandasthumb. org/ archives/ 2006/ 07/ no_one_here_but. html) Nick Matzke. The Panda's Thumb, 11 July 2006
    [116] "has the effect of implicitly bolstering alternative religious theories of origin by suggesting that evolution is a problematic theory even in
       the field of science." ... The effect of Defendants’ actions in adopting the curriculum change was to impose a religious view of biological
       origins into the biology course, in violation of the Establishment Clause. Kitzmiller v. Dover Area School District, Conclusion, page 134
    [117] "ID's backers have sought to avoid the scientific scrutiny which we have now determined that it cannot withstand by advocating that the
       controversy, but not ID itself, should be taught in science class. This tactic is at best disingenuous, and at worst a canard. The goal of the IDM
       is not to encourage critical thought, but to foment a revolution which would supplant evolutionary theory with ID."Kitzmiller v. Dover Area
       School District, whether ID is science, page 89
    [118] AAAS Dialogue on Science, Ethics, and Religion (http:/ / www. aaas. org/ spp/ dser/ 02_Events/ Lectures/ 2006/ 02_Lecture_2006_0420.
       shtml), 20 April 2006, Emmett Holman, Associate Professor of Philosophy from George Mason University, retrieved 2007-04-29
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    [120] Woods 2005, pp. 67–114, Chapter Five: The Church and Science
    [121] Morris 1982
    [122] Index to Creationist Claims - Claim CA114 (http:/ / talkorigins. org/ indexcc/ CA/ CA114. html) edited by Mark Isaak. 2005
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       Edward Humes, Pittsburgh Tribune-Review
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       2008-02-17.
    [137] Roger Highfield (2007-02-10). "Creationists rewrite natural history" (http:/ / www. telegraph. co. uk/ earth/ main. jhtml?view=DETAILS&
       grid=& xml=/ earth/ 2007/ 10/ 02/ scihist102. xml). London: The Telegraph. . Retrieved 2008-02-17.
    [138] New Scientist 10 November 2007, p. 72
    [139] Christianity – Pentecostalism (http:/ / www. abc. net. au/ religion/ stories/ s820631. htm) Australian Broadcasting Corporation
    [140] Carly Hennessy (May 30, 2010). "Creationism to be taught in Queensland classrooms" (http:/ / www. heraldsun. com. au/ news/ national/
       creationism-to-be-taught-in-queensland-classrooms/ story-e6frf7l6-1225873019548). Herald Sun. . Retrieved July 22, 2010.
Creation–evolution controversy                                                                                                                          355
    [141] Plimer, Ian "Telling lies for God- Reason versus Creationism", (Random House)
    [142] "Telling Lies for God"? - One Man's Crusade (http:/ / www. abc. net. au/ quantum/ info/ 97lies. htm), accessed 2008-02-05, Quantum. See
       transcript link for detail.
    [143] "Evolution and religion: In the beginning" (http:/ / www. economist. com/ world/ displaystory. cfm?story_id=9036706). The Economist.
       2007-04-19. . Retrieved 2007-04-25.This article gives a worldwide overview of recent developments on the subject of the controversy.
    [144] While the term myth is often used colloquially to refer to "a false story", this article uses the term "creation myth" in the formal sense,
       common in academic literature, meaning "a religious or supernatural story or explanation that describes the beginnings of humanity, earth,
       life, and the universe."
Footnotes
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    • Bumiller, Elisabeth (2005-08-03), "Bush Remarks Roil Debate on Teaching of Evolution" (http://www.nytimes.
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       2008-04-11.
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     External links
     • Gallup public opinion poll in regards to the concepts of Evolution, Creationism, and Intelligent Design as of May
       2007 (http://www.gallup.com/poll/21814/Evolution-Creationism-Intelligent-Design.aspx)
     • Data by country regarding the percentage of the population that believes in evolution (http://www.data360.org/
       graph_group.aspx?Graph_Group_Id=286)
     • Opinion of Tennessee Supreme Court in Scopes v. State (http://www.law.umkc.edu/faculty/projects/ftrials/
       scopes/statcase.htm)
     Creationism as social policy
     • Isaac Asimov, The "Threat" of Creationism. (http://www.stephenjaygould.org/ctrl/azimov_creationism.html)
     Evolution versus creationism debates
    Objections to evolution
    Objections to evolution have been raised since evolutionary ideas came to prominence in the 19th century.[1] When
    Charles Darwin published his 1859 book On the Origin of Species, his theory of evolution by natural selection
    initially met opposition from alternate scientific theories, but came to be universally accepted by the scientific
    community.[2] The observation of evolutionary processes occurring, as well as the current theory explaining that
    evidence, have been uncontroversial among mainstream biologists for nearly a century.[3]
    Since then, nearly all criticisms of evolution have come from religious sources, rather than from the scientific
    community.[4] Although most religions have accepted the occurrence of evolution, such as those advocating theistic
    evolution, there still exist religious beliefs which reject evolutionary explanations in favor of creationism, the belief
    that a deity supernaturally created the world largely in its current form.[5] The resultant U.S. centric
    creation-evolution controversy has been a focal point of recent conflict between religion and science.
    In contrast to earlier objections to evolution that were either strictly scientific or explicitly religious, recent
    objections to evolution have frequently blurred the distinction between the two. Such objections have often centered
    on undermining evolution's scientific basis, with the intent of combating the teaching of evolution as fact and
    opposing the spread of "atheistic materialism".[6] Modern creationism is characterized by movements such as
    Creation Science, neocreationism, and Intelligent Design which argue that the idea of life being directly "designed"
    by a god or intelligence is at least as scientific as evolutionary theory, and should therefore be taught in public
    schools. Their arguments against evolution have become widespread, and include objections to evolution's evidence,
    methodology, plausibility, morality, and scientific acceptance. The scientific community, however, does not accept
    such objections as having any validity, citing detractors' misinterpretations of scientific method, evidence, and basic
    physical laws.[7]
    While objections primarily originate from the United States, there is widespread belief in creationism in the Muslim
    world,[8] South Africa and India[9] with smaller followings in Australia, New Zealand, the United Kingdom and
    Canada.[10] However, in India 77% of respondents who had heard of Charles Darwin and knew something about the
    theory of evolution agreed it was backed by scientific evidence.[11]
    Defining evolution
    One of the main sources of confusion and ambiguity in the creation-evolution debate is the definition of evolution
    itself. In the context of biology, evolution is genetic changes in populations of organisms over successive
    generations. However, the word has a number of different meanings in different fields, from evolutionary
    computation to molecular evolution to sociocultural evolution to stellar and galactic evolution. It can even refer to
    metaphysical evolution, spiritual evolution, or any of a number of evolutionist philosophies. When biological
    evolution is conflated with other evolutionary processes, this can cause errors such as the claim that modern
    evolutionary theory says anything about abiogenesis or the Big Bang.[12]
    In colloquial contexts, evolution can refer to any sort of progressive development, and often bears a connotation of
    gradual improvement: here evolution is understood as a process that results in greater quality or complexity. This
    common definition, when misapplied to biological evolution, leads to frequent misunderstandings. For example, the
    idea of devolution ("backwards" evolution) is a result of erroneously assuming that evolution is directional or has a
    specific goal in mind (cf. orthogenesis). In reality, the evolution of an organism has no "objective" other than
    increasing the organism's ability to survive and reproduce in its environment; and its suitability is only defined in
    relation to this environment. Biologists do not consider any one species, such as humans, to be more highly evolved
    or advanced than another. Certain sources have been criticized for indicating otherwise due to a tendency to evaluate
    nonhuman organisms according to anthropocentric standards rather than more objective ones.[13]
Objections to evolution                                                                                                           360
    Evolution also does not require that organisms become more complex. Although the history of life shows an
    apparent trend towards the evolution of complexity; there is a question if this appearance of increased complexity is
    real, or if this conclusion comes from neglecting the fact that the majority of life on earth has always consisted of
    prokaryotes.[14] In this view, complexity is not a necessary consequence of evolution; rather, it is a consequence of
    the specific circumstances of evolution on Earth, which frequently made greater complexity advantageous, and thus
    naturally selected for. Depending on the situation, organisms' complexity can either increase, decrease, or stay the
    same, and all three of these trends have been observed in evolution.[13]
    Creationist sources frequently define evolution according to a colloquial, rather than scientific, meaning.[15] As a
    result, many attempts to rebut evolution do not address the findings of evolutionary biology (see straw man
    argument). This also means that advocates of creationism and evolutionary biologists often simply speak past each
    other.[12] [16]
    History
                                                                    Various evolutionary ideas came to prominence around
                                                                    the start of the nineteenth century, in particular the
                                                                    transmutation of species theory put forward by
                                                                    Jean-Baptiste Lamarck. These were opposed on
                                                                    scientific grounds, most notably by Georges Cuvier, as
                                                                    well as meeting political and religious objections.[1]
                                                                    These ideas that natural laws controlled the
                                                                    development of nature and society gained vast popular
                                                                    audiences with George Combe's The Constitution of
                                                                    Man of 1828 and the anonymous Vestiges of the
                                                                    Natural History of Creation of 1844. When Charles
                                                                    Darwin published his 1859 book On the Origin of
                                                                    Species, within fifteen to twenty years he convinced
                                                                    most of the scientific community that evolution through
                                                                    common descent was true, but while most accepted that
                                                                    natural selection was a valid and empirically testable
                                                                    hypothesis, his view that it was the primary mechanism
                                                                    of evolution was generally rejected.[2]
    Mendelian inheritance, leading to the rise of the modern evolutionary synthesis. The modern synthesis rose to
    universal acceptance among biologists with the help of new evidence, such as genetics, which confirmed Darwin's
    predictions and refuted the competing theories.[21]
    Protestantism, especially in America, broke out in "acrid polemics" and argument about evolution from 1860 to the
    1870s – with the turning point possibly marked with the death of Louis Agassiz in 1873 – and by 1880 a form of
    "Christian evolution" was becoming the consensus.[22] In Britain while publication of The Descent of Man by
    Darwin in 1871 reinvigorated debate from the previous decade, Sir Henry Chadwick notes a steady acceptance of
    evolution "among more educated Christians" between 1860 and 1885. This led evolutionary theory to be "both
    permissible and respectable" by 1876.[22] Frederick Temple's lectures on Relations between Religion and Science
    (1884) speaking on how evolution was not "antagonistic" to religion highlighted this trend.[23] Temple's appointment
    to Archbishop of Canterbury in 1896 showed the broad acceptance of evolution within the church hierarchy.[22]
    For decades Catholicism avoided official refutation of evolution. However, it would rein in Catholics who proposed
    that evolution could be reconciled with the Bible, as this conflicted with First Vatican Council's (1869–70) finding
    that everything was created out of nothing by God, and to question that could lead to excommunication. In 1950, the
    encyclical Humani Generis of Pope Pius XII first mentioned evolution directly and officially.[24] It allowed for
    inquiry into humans coming from pre-existing living matter, but to not question Adam and Eve or the creation of the
    soul. In 1996, Pope John Paul II stated evolution was "more than a hypothesis" and acknowledged the large body of
    work accumulated in its support, but reiterated that any attempt to give a material explanation of the human soul was
    "incompatible with the truth about man."[25]
    Muslim reaction covered the gamut with those believing in literal creation from the Qur'an while many educated
    Muslims subscribed to a version of theistic or guided evolution where the Qur'an reinforced rather than contradicted
    mainstream science. This occurred relatively quickly as medieval Madrasah's taught ideas of Al-Jahiz, a Muslim
    scholar from the 9th century, who proposed concepts similar to natural selection.[8] However, acceptance of
    evolution remains low in the Muslim world as prominent figures reject evolution's underpinning philosophy of
    materialism as unsound to human origins and a denial of Allah.[8] Further objections by Muslim scholars and writers
    largely reflect those put forward in the Western world.[26]
    Regardless of acceptance from major religious hierarchies, early religious objections to Darwin's theory are still used
    in opposition to evolution. The ideas that species change over time through natural processes and that different
    species share common ancestors seemed to contradict the Genesis account of Creation. Believers in Biblical
    infallibility attacked Darwinism as heretical. The natural theology of the early 19th century was typified by Paley's
    watchmaker analogy, an argument from design still used by the creationist movement. Natural theology included a
    range of ideas and arguments from the outset, and when Darwin's theory was published, ideas of theistic evolution
    were presented in which evolution is accepted as a secondary cause open to scientific investigation, while still
    holding belief in God as a first cause with a non-specified role in guiding evolution and creating humans.[27] This
    position has been adopted by denominations of Christianity and Judaism in line with modernist theology which
    views the Bible and Torah as allegorical thus removing the conflict between evolution and religion.
    However, in the 1920s Christian fundamentalists in the United States developed their literalist arguments against
    Modernist theology into opposition to the teaching of evolution due to fears that ‘‘Darwinism’’ had led to German
    militarism and was a threat to religion and morality. This opposition developed into the creation-evolution
    controversy involving Christian literalists in the United States objecting to the teaching of evolution in public
    schools. Although early objections dismissed evolution for contradicting their interpretation of the Bible, this
    argument was invalidated when the Supreme Court ruled in Epperson v. Arkansas that forbidding the teaching of
    evolution on religious grounds violated the Establishment Clause.[28]
    Since then creationists have developed more nuanced objections to evolution, alleging variously that it is
    unscientific, infringes on creationists' religious freedoms or that the acceptance of evolution is a religious stance.[29]
    Creationists have appealed to democratic principles of fairness, arguing that evolution is controversial, and that
Objections to evolution                                                                                                         362
    science classrooms should therefore "Teach the Controversy".[30] These objections to evolution culminated in the
    intelligent design movement in the early 2000s that unsuccessfully attempted to present itself as a scientific
    alternative to evolution.[31] [32]
    Scientific acceptance
    Recent objections to evolutionary theory have focused on its scientific validity,[33] [34] or attempting to come up with
    alternative ideas such as Creationism to debate its findings.[35] Creationists often argue, for example, that evolution
    is unproven, non-factual, or controversial.[36]
    Status as a theory
    Critics of evolution frequently assert that evolution is "just a theory", with the intent of emphasizing evolution's
    unproven nature, or of characterizing it as a matter of opinion rather than of fact or evidence. This reflects a
    misunderstanding of the meaning of theory in a scientific context: whereas in colloquial speech a theory is a
    conjecture or guess, in science a theory is simply an explanation or model of the world that makes testable
    predictions. When evolution is used to describe a theory, it refers to an explanation for the diversity of species and
    their ancestry. An example of evolution as theory is the modern synthesis of Darwinian natural selection and
    Mendelian inheritance. As with any scientific theory, the modern synthesis is constantly debated, tested, and refined
    by scientists. There is an overwhelming consensus in the scientific community that it remains the only robust model
    that accounts for the known facts concerning evolution.[37]
    Critics state that evolution is not a fact.[38] In science, a fact is a verified empirical observation; in colloquial
    contexts, however, a fact can simply refer to anything for which there is overwhelming evidence. For example, in
    common usage theories such as "the Earth revolves around the Sun" and "objects fall due to gravity" may be referred
    to as "facts", even though they are purely theoretical. From a scientific standpoint, therefore, evolution may be called
    a "fact" for the same reason that gravity can: under the scientific definition, evolution is an observable process that
    occurs whenever a population of organisms genetically changes over time. Under the colloquial definition, the theory
    of evolution can also be called a fact, referring to this theory's well-established nature. Thus, evolution is widely
    considered both a theory and a fact by scientists.[39] [40] [41]
    Similar confusion is involved in objections that evolution is "unproven";[42] strict proof is possible only in formal
    sciences such as logic and mathematics, not natural sciences (where the proper term is "validated"), so this is trivially
    true, and no more an indictment of evolution than calling it a "theory". The confusion arises, however, in that the
    colloquial meaning of proof is simply "compelling evidence", in which case scientists would indeed consider
    evolution "proven". The distinction is an important one in philosophy of science, as it relates to the lack of absolute
    certainty in all empirical claims, not just evolution.[43]
    Degree of acceptance
    In 1999 a new major objection to evolution appeared in Kansas, and is in a sense self-fulfilling: it argues that
    evolution is controversial or contentious.[44] Unlike past creationist arguments which sought to abolish the teaching
    of evolution altogether, this argument makes the weaker claim that evolution, being controversial, should be
    presented alongside other, alternative views, and students should be allowed to evaluate and choose between the
    options on their own.[45] This appeal to "fairness" and a more democratic, "balanced" approach in which conflicting
    views are given "equal time" appeals to American creationists, and was endorsed by U.S. President George W.
    Bush.[32] [42] [46]
    This objection forms the basis of the "Teach the Controversy" campaign, an attempt by the Discovery Institute to
    promote the teaching of intelligent design in public schools. This in turn forms a major part of the Institute's "wedge
    strategy", an attempt to gradually undermine evolution and ultimately to "reverse the stifling materialist world view
    and replace it with a science consonant with Christian and theistic convictions".[30]
Objections to evolution                                                                                                          363
    Scientists and U.S. courts have rejected this objection on the grounds that science is not based on appeals to
    popularity, but on evidence. The scientific consensus of biologists, not popular opinion or fairness, determines what
    is considered acceptable science, and it is argued that although evolution is clearly controversial in the public arena,
    it is entirely uncontroversial among experts in the field.[47]
    In response, creationists have disputed the level of scientific support for evolution. The Discovery Institute has
    gathered over 600 scientists since 2001 to sign "A Scientific Dissent From Darwinism" in order to show that there
    are a number of scientists who dispute what they refer to as "Darwinian evolution". This statement did not profess
    outright disbelief in evolution, but expressed skepticism as to the ability of "random mutation and natural selection to
    account for the complexity of life." Several counter-petitions have been launched in turn, including A Scientific
    Support for Darwinism, which gathered over 7,000 signatures in four days, and Project Steve, a tongue-in-cheek
    petition that has gathered 1,140 (as of August 12, 2010) evolution-supporting scientists named "Steve".
    Creationists have argued for over a century that evolution is "a theory in crisis" that will soon be overturned,[48]
    based on objections that it lacks reliable evidence or violates natural laws. These objections have been rejected by
    most scientists, as have claims that intelligent design, or any other creationist explanation, meets the basic scientific
    standards that would be required to make them scientific alternatives to evolution. It is also argued that even if
    evidence against evolution exists, it is a false dilemma to characterize this as evidence for intelligent design.[46] [49]
    A similar objection to evolution is that certain scientific authorities – mainly pre-modern ones – have doubted or
    rejected evolution.[50] Most commonly, it is argued that Darwin "recanted" on his deathbed, a false anecdote
    originating from the Lady Hope Story.[51] These objections are generally rejected as appeals to authority. Even if this
    myth were true, it would hold no bearing on the merit of the theory itself.
    Scientific status
    A common neo-creationist objection to evolution is that evolution does not adhere to normal scientific
    standards—that it is not genuinely scientific. It is argued that evolutionary biology does not follow the scientific
    method, and therefore should not be taught in science classes, or at least should be taught alongside other views (i.e.,
    creationism). These objections often deal with the very nature of evolutionary theory and the scientific method.
    Religious nature
    Creationists commonly argue against evolution on the grounds that "evolution is a religion; it is not a science".[52]
    The purpose of this criticism is to undermine the higher ground biologists claim in debating creationists, and to
    reframe the debate from being between science (evolution) and religion (creationism) to being between two equally
    religious beliefs – or even to argue that evolution is religious while intelligent design is not.[53] [54] Those that
    oppose evolution frequently refer to supporters of evolution as "Evolutionists" or "Darwinists".[52]
    The arguments for evolution being a religion generally amount to arguments by analogy: it is argued that evolution
    and religion have one or more things in common, and that therefore evolution is a religion. Examples of claims made
    in such arguments are statements that evolution is based on faith, that supporters of evolution revere Darwin as a
    prophet, and that supporters of evolution dogmatically reject alternative suggestions out-of-hand.[42] [55] These
    claims have become more popular in recent years as the neocreationist movement has sought to distance itself from
    religion, thus giving it more reason to make use of a seemingly anti-religious analogy.[47]
    In response, supporters of evolution have argued that no scientist's claims, including Darwin's, are treated as
    sacrosanct, as shown by the aspects of Darwin's theory that have been rejected or revised by scientists over the years,
    to form first Neo-Darwinism and later the modern evolutionary synthesis.[56] [57] The claim that evolution relies on
    faith, often based on the creationist belief that evolution has never been observed, is likewise rejected on the grounds
    that evolution has strong supporting evidence, and therefore does not require faith.
Objections to evolution                                                                                                         364
    In general, the argument that evolution is religious has been rejected on the grounds that religion is not defined by
    how dogmatic or zealous its adherents are, but by its spiritual or supernatural beliefs. Evolutionary supporters point
    out evolution is neither dogmatic nor based on faith, and they accuse creationists of equivocating between the strict
    definition of religion and its colloquial usage to refer to anything that is enthusiastically or dogmatically engaged in.
    U.S. courts have also rejected this objection:
           Assuming for the purposes of argument, however, that evolution is a religion or religious tenet, the
           remedy is to stop the teaching of evolution, not establish another religion in opposition to it. Yet it is
           clearly established in the case law, and perhaps also in common sense, that evolution is not a religion
           and that teaching evolution does not violate the Establishment Clause.[58]
    A related claim is that evolution is atheistic; creationists sometimes merge the two claims and describe evolution as
    an "atheistic religion" (cf. humanism).[54] This argument against evolution is also frequently generalized into a
    criticism of all science; it is argued that "science is an atheistic religion", on the grounds that its methodological
    naturalism is as unproven, and thus as "faith-based", as the supernatural and theistic beliefs of creationism.[59]
    Unfalsifiability
    A statement is considered falsifiable if there is an observation or a test that could be made that would demonstrate
    that the statement is false. Statements that are not falsifiable cannot be examined by scientific investigation since
    they permit no tests that evaluate their accuracy. Creationists such as Henry M. Morris have claimed that evolution is
    unfalsifiable. They claim that any observation can be fitted into the evolutionary framework, and that therefore it is
    impossible to demonstrate that evolution is wrong. As such, they claim that evolution is non-scientific.[60] [61]
    However, evolution is considered falsifiable by scientists because it can
    make predictions that, were they contradicted by the evidence, would
    falsify evolution. Several kinds of evidence have been proposed that
    could falsify evolution, such as the fossil record showing no change over
    time, confirmation that mutations are prevented from accumulating, or
    observations showing organisms being created supernaturally or
    spontaneously.[60] Many of Darwin's ideas and assertions of fact have
    been falsified as evolutionary science has developed and has continued
    to confirm his central concepts.[62] In contrast, creationism consists
    largely of unsubstantiated claims that evolution has been falsified.[60]
    Creationist explanations involving the direct intervention of the
    supernatural in the physical world are not falsifiable, because any result
    of an experiment or investigation could be the unpredictable action of an
    omnipotent deity.[63]
    The most direct evidence that evolutionary theory is falsifiable may be the original words of Charles Darwin who, in
    chapter 6 of On the Origin of Species wrote: "If it could be demonstrated that any complex organ existed, which
Objections to evolution                                                                                                             365
    could not possibly have been formed by numerous, successive, slight modifications, my theory would absolutely
    break down."[67]
    In response to the unfalsifiability criticism of evolutionary theory, numerous examples of potential ways to falsify
    evolution have been proposed. J.B.S. Haldane, when asked what hypothetical evidence could disprove evolution,
    replied "fossil rabbits in the Precambrian era".[68] [69] Numerous other potential ways to falsify evolution have also
    been proposed.[43] For example, the fact that humans have one fewer pair of chromosomes than the great apes
    offered a testable hypotheses involving the fusion or splitting of chromosomes from a common ancestor. The fusion
    hypothesis was confirmed in 2005 by discovery that human chromosome 2 is homologous with a fusion of two
    chromosomes that remain separate in other primates. Extra, inactive telomeres and centromeres remain on human
    chromosome 2 as a result of the fusion.[70] The assertion of common descent could also have been disproven with
    the invention of DNA analysis. If true, human DNA should be far more similar to chimpanzees and other great apes,
    than to other mammals. If not, then common descent is falsified. DNA analysis has shown that humans and
    chimpanzees share a large percentage of their DNA (between 95% to 99.4% depending on the measure).[71] Also, the
    evolution of chimpanzees and humans from a common ancestor predicts a (geologically) recent common ancestor.
    Numerous transitional fossils have since been found.[72] Hence, human evolution has passed several falsifiable tests.
    A related claim, also once used, but then abandoned, by Popper, is that natural selection is tautological.[65]
    Specifically, it is often argued that the phrase "survival of the fittest" is a tautology, in that fitness is defined as
    ability to survive and reproduce. However, this phrase, first used by Herbert Spencer in 1864, is rarely used by
    biologists. Additionally, fitness is more accurately defined as the state of possessing traits that make survival more
    likely; this definition, unlike simple "survivability", avoids being trivially true.[73] [74] [75]
    Similarly, it is argued that evolutionary theory is circular reasoning, in that evidence is interpreted as supporting
    evolution, but evolution is required to interpret the evidence. An example of this is the claim that geological strata
    are dated through the fossils they hold, but that fossils are in turn dated by the strata they are in.[42] However, in most
    cases strata are not dated by their fossils, but by their position relative to other strata and by radiometric dating, and
    most strata were dated before the theory of evolution was formulated.[76]
    In his book, Abusing Science: The Case Against Creationism, philosopher of science Philip Kitcher specifically
    addresses the "falsifiability" question by taking into account notable philosophical critiques of Popper by Carl
    Gustav Hempel and Willard Van Orman Quine that reject his definition of theory as a set of falsifiable
    statements.[77] As Kitcher points out, if one took a strictly Popperian view of “theory,” observations of Uranus when
    first discovered in 1781 would have “falsified” Newton’s celestial mechanics. Rather, people suggested that another
    planet influenced Uranus’ orbit – and this prediction was indeed eventually confirmed. Kitcher agrees with Popper
    that “there is surely something right in the idea that a science can succeed only if it can fail.”[78] But he insists that we
    view scientific theories as consisting of an “elaborate collection of statements,” some of which are not falsifiable, and
    others – what he calls “auxiliary hypotheses,” which are.
    According to Kitcher, good scientific theories must have three features – unity, fecundity, and independent
    testability of auxiliary hypotheses:
    Unity
            “A science should be unified .... Good theories consist of just one problem-solving strategy, or a small family
            of problem-solving strategies, that can be applied to a wide range of problems” (1982: 47).
    Fecundity
            A great scientific theory, like Newton’s, opens up new areas of research... Because a theory presents a
            new way of looking at the world, it can lead us to ask new questions, and so to embark on new and
            fruitful lines of inquiry... Typically, a flourishing science is incomplete. At any time, it raises more
            questions than it can currently answer. But incompleteness is no vice. On the contrary, incompleteness is
            the mother of fecundity... A good theory should be productive; it should raise new questions and
Objections to evolution                                                                                                        366
           presume that those questions can be answered without giving up its problem-solving strategies (1982:
           47–48).
    Auxiliary hypothesis that are independently testable
           “An auxiliary hypothesis ought to be testable independently of the particular problem it is introduced to solve,
           independently of the theory it is designed to save” (1982: 46) (e.g. the evidence for the existence of Neptune is
           independent of the anomalies in Uranus’s orbit).
    Like other definitions of theories, including Popper’s, Kitcher makes it clear that a good theory includes statements
    that have (in his terms) “observational consequences.” But, like the observation of irregularities in Uranus’s orbit,
    falsification is only one possible consequence of an observation. The production of new hypotheses is another
    possible – and equally important – observational consequence. Kitcher’s account of a good theory is based not only
    on his understanding of how physical sciences work. He is also taking into account the way the life sciences work.
    From Kitcher’s point of view, Darwinian theory not only meets the three conditions for a good scientific theory; it is
    without question an extraordinarily successful theory:
           The heart of Darwinian evolutionary theory is a family of problem-solving strategies, related by their
           common employment of a particular style of historical narrative. A Darwinian history is a piece of
           reasoning of the following general form. The first step consists in a description of an ancestral
           population of organisms. The reasoning proceeds by tracing the modification of the population through
           subsequent generations, showing how characteristics were selected, inherited, and became prevalent.
           Reasoning like this can be used to answer a host of biological questions.[79]
           The same kind of story can be told again and again to answer all sorts of questions about all sorts of
           living things. Evolutionary theory is unified because so many diverse questions ... can be addressed by
           advancing Darwinian histories. Moreover, these narratives constantly make claims that are subject to
           independent check.[80]
           Darwin not only provided a scheme for unifying the diversity of life. He also gave a structure to our
           ignorance. After Darwin, it was important to resolve general issues about the presuppositions of
           Darwinian histories. The way in which biology should proceed had been made admirably plain, and it
           was clear that biologists had to tackle questions for which they had, as yet, no answers.[81]
Objections to evolution                                                                                                                   367
    Evidence
    Objections to the evidence that evolution occurs tend to be more concrete and specific, often involving direct
    analysis of evolutionary biology's methods and claims.
    Lack of observation
    A common claim of creationists is that evolution has
    never been observed.[82] Challenges to such objections
    often come down to debates over how evolution is
    defined (see above). Under the conventional biological
    definition of evolution, it is a simple matter to observe
    evolution occurring. Evolutionary processes, in the
    form of populations changing their genetic composition
    from generation to generation, have been observed in
    different scientific contexts, including the evolution of
    fruit flies, mice and bacteria in the laboratory,[83] and
    of tilapia in the field. Such studies on experimental
    evolution, particularly those using microorganisms, are
    now providing important insights into how evolution
    occurs.[83] [84]
                                                                  Transitional species such as the Archaeopteryx have been a fixture of
    In response to such examples, creationists specify that
                                                                         the creation-evolution debate for almost 150 years.
    they are objecting only to macroevolution, not
    microevolution:[85] [86] most creationist organizations
    do not dispute the occurrence of short-term, relatively minor evolutionary changes, such as that observed even in dog
    breeding. Rather, they dispute the occurrence of major evolutionary changes over long periods of time, which by
    definition cannot be directly observed, only inferred from microevolutionary processes and the traces of
    macroevolutionary ones.
    However, as biologists define macroevolution, both microevolution and macroevolution have been observed.
    Speciations, for example, have been directly observed many times, despite popular misconceptions to the
    contrary.[87] Additionally, the modern evolutionary synthesis draws no distinction between macroevolution and
    microevolution, considering the former to simply be the latter on a larger scale.[43] [88] An example of this is ring
    species.
    Additionally, past macroevolution can be inferred from historical traces. Transitional fossils, for example, provide
    plausible links between several different groups of organisms, such as Archaeopteryx linking birds and dinosaurs,[89]
    or the recently-discovered Tiktaalik linking fish and limbed amphibians.[90] Creationists dispute such examples, from
    asserting that such fossils are hoaxes or that they belong exclusively to one group or the other, to asserting that there
    should be far more evidence of obvious transitional species.[91] Darwin himself found the paucity of transitional
    species to be one of the greatest weaknesses of his theory: "Why then is not every geological formation and every
    stratum full of such intermediate links? Geology assuredly does not reveal any such finely graduated organic chain;
    and this, perhaps, is the most obvious and gravest objection which can be urged against my theory. The explanation
    lies, as I believe, in the extreme imperfection of the geological record." Darwin appealed to the limited collections
    then available, the extreme lengths of time involved, and different rates of change with some living species differing
    very little from fossils of the Silurian period. In later editions he added "that the periods during which species have
    been undergoing modification, though very long as measured by years, have probably been short in comparison with
    the periods during which these same species remained without undergoing any change."[92] The number of clear
    transitional fossils has increased enormously since Darwin's day, and this problem has been largely resolved with the
Objections to evolution                                                                                                       368
    advent of the theory of punctuated equilibrium, which predicts a primarily stable fossil record broken up by
    occasional major speciations.[93]
    Creationists counter that even observed speciations and transitional fossils are insufficient evidence for the vast
    changes summarized by such phrases as "fish to philosophers" or "particles to people".[94] As more and more
    compelling direct evidence for inter-species and species-to-species evolution has been gathered, creationists have
    redefined their understanding of what amounts to a "created kind", and have continued to insist that more dramatic
    demonstrations of evolution be experimentally produced.[95] One version of this objection is "Were you there?",
    popularized by Ken Ham. It argues that because no one except God could directly observe events in the distant past,
    scientific claims are just speculation or "story-telling".[96] [97] DNA sequences of the genomes of organisms allow an
    independent test of their predicted relationships, since species which diverged more recently will be more closely
    related genetically than species which are more distantly related; such phylogenetic trees show a hierarchical
    organization within the tree of life, as predicted by common descent.[98] [99]
    In fields such as astrophysics or meteorology, where direct observation or laboratory experiments are difficult or
    impossible, the scientific method instead relies on observation and logical inference. In such fields, the test of
    falsifiability is satisfied when a theory is used to predict the results of new observations. When such observations
    contradict a theory's predictions, it may be revised or discarded if an alternative better explains the observed facts.
    For example, Newton's theory of gravitation was replaced by Einstein's theory of General Relativity when the latter
    was observed to more precisely predict the orbit of Mercury.[100]
    Instability of evidence
    A related objection is that evolution is based on unreliable evidence. This objection goes further than the less
    substantial "evolution isn't proven" arguments, claiming that evolution isn't even well-evidenced. Typically, this is
    either based on the argument that evolution's evidence is full of frauds and hoaxes, that current evidence for
    evolution is likely to be overturned because past evidence has been, or that certain types of evidence are inconsistent
    and dubious.
    Arguments against evolution's reliability are thus often based on analyzing the history of evolutionary thought or the
    history of science in general. Creationists point out that in the past, major scientific revolutions have overturned
    theories that were at the time considered near-certain. They thus claim that current evolutionary theory is likely to
    undergo such a revolution in the future, on the basis that it is a "theory in crisis" for one reason or another.[101]
    Critics of evolution commonly appeal to past scientific hoaxes such as
    the Piltdown Man forgery. It is argued that because scientists have
    been mistaken and deceived in the past about evidence for various
    aspects of evolution the current evidence for evolution is likely to also
    be based on fraud and error. Much of the evidence for evolution has
    been accused of being fraudulent at various times, including
    Archaeopteryx, peppered moth melanism, and Darwin's finches; these
    claims have been subsequently refuted.[103] [104] [105]
    It has also been claimed that certain former pieces of evidence for
    evolution which are now considered out-of-date and erroneous, such as
                                                                              Romanes's 1892 copy of Ernst Haeckel's embryo
    Ernst Haeckel's 19th-century comparative drawings of embryos, used
                                                                                  drawings, often attributed incorrectly to
    to illustrate his Recapitulation theory ("Ontogeny recapitulates                                    [102]
                                                                                              Haeckel.
                                                      [106]
    Phylogeny"), were not merely errors but frauds.         Jonathan Wells
    criticizes biology textbooks by alleging that they continue to reproduce such evidence after it has been
    debunked.[104] In response, the National Center for Science Education notes that none of the textbooks reviewed by
Objections to evolution                                                                                                                 369
    Wells makes the claimed error, as Haeckel's drawings are shown in a historical context with discussion about why
    they are wrong, and the accurate modern drawings and photos used in the textbooks are misrepresented by
    Wells.[107]
    Plausibility
    Some of the oldest and most common objections to evolution dispute whether evolution can truly account for all the
    apparent complexity and order in the natural world. It is argued that evolution is too unlikely or otherwise lacking to
    account for various aspects of life, and therefore that an intelligence, God, must at the very least be appealed to for
    those specific features.
    Improbability
                                                            A common objection to evolution is that it is simply too unlikely for
                                                            life, in its complexity and apparent "design", to have arisen "by
                                                            chance". It is argued that the odds of life having arisen without a
                                                            deliberate intelligence guiding it are so astronomically low that it is
                                                            unreasonable not to infer an intelligent designer from the natural world,
                                                            and specifically from the diversity of life.[115] A more extreme version
                                                            of this argument is that evolution cannot create complex structures.
                                                            The idea that it is simply too implausible for life to have evolved is
                                                            often encapsulated with a quotation that the "probability of life
                                                            originating on earth is no greater than the chance that a hurricane
                                                            sweeping through a scrap-yard would have the luck to assemble a
                                                            Boeing 747" (a claim attributed to astrophysicist Fred Hoyle and
                                                            known as Hoyle's fallacy).[116]
       Because the theory of evolution is often thought     This view is thus invariably justified with arguments from analogy.
       of as the idea that life arose "by chance", design   The basic idea of this argument for a designer is the teleological
       arguments such as William Paley's watchmaker
                                                            argument, an argument for the existence of God based on the perceived
         analogy have been popular objections to the
                                            [114]
                theory since Darwin's day.
Objections to evolution                                                                                                            370
    order or purposefulness of the universe. A common way of using this as an objection to evolution is by appealing to
    the 18th-century philosopher William Paley's watchmaker analogy, which argues that certain natural phenomena are
    analogical to a watch (in that they are ordered, or complex, or purposeful), which means that, like a watch, they must
    have been designed by a "watchmaker"—an intelligent agent. This argument forms the core of intelligent design, a
    neocreationist movement seeking to establish certain variants of the design argument as legitimate science, rather
    than as philosophy or theology, and have them be taught alongside evolution.[28] [47]
    This objection is fundamentally an argument by lack of imagination, or argument from incredulity: a certain
    explanation is seen as being counter-intuitive, and therefore an alternate, more intuitive explanation is appealed to
    instead. Supporters of evolution generally respond by arguing that evolution is not based on "chance", but on
    predictable chemical interactions: natural processes, rather than supernatural beings, are the "designer". Although the
    process involves some random elements, it is the non-random selection of survival-enhancing genes that drives
    evolution along an ordered trajectory. The fact that the results are ordered and seem "designed" is no more evidence
    for a supernatural intelligence than the appearance of complex natural phenomenon (e.g. snowflakes).[117] It is also
    argued that there is insufficient evidence to make statements about the plausibility or implausibility of abiogenesis,
    that certain structures demonstrate poor design, and that the implausibility of life evolving exactly as it did is no
    more evidence for an intelligence than the implausibility of a deck of cards being shuffled and dealt in a certain
    random order.[47] [114]
    It has also been noted that arguments against some form of life arising "by chance" are really objections to
    nontheistic abiogenesis, not to evolution. Indeed, arguments against "evolution" are based on the misconception that
    abiogenesis is a component of, or necessary precursor to, evolution. Similar objections sometimes conflate the Big
    Bang with evolution.[12]
    Christian apologist and philosopher Alvin Plantinga, a supporter of intelligent design, has formalized and revised the
    improbability argument as the evolutionary argument against naturalism, which asserts that it is irrational to reject a
    supernatural, intelligent creator because the apparent probability of certain faculties evolving is so low. Specifically,
    Plantinga claims that evolution cannot account for the rise of reliable reasoning faculties. Plantinga argues that
    whereas a God would be expected to create beings with reliable reasoning faculties, evolution would be just as likely
    to lead to unreliable ones, meaning that if evolution is true, it is irrational to trust whatever reasoning one relies on to
    conclude that it is true.[118] This novel epistemological argument has been criticized similarly to other probabilistic
    design arguments. It has also been argued that rationality, if conducive to survival, is more likely to be selected for
    than irrationality, making the natural development of reliable cognitive faculties more likely than unreliable
    ones.[119] [120]
    Implausibility
    This class of objections is more radical than the above, claiming that a major aspect of evolution is not merely
    unscientific or implausible, but rather impossible, because it contradicts some other law of nature or is constrained in
    such a way that it cannot produce the biological diversity of the world.
           [R]eason tells me, that if numerous gradations from a perfect and complex eye to one very imperfect and
           simple, each grade being useful to its possessor, can be shown to exist; if further, the eye does vary ever
           so slightly, and the variations be inherited, which is certainly the case; and if any variation or
           modification in the organ be ever useful to an animal under changing conditions of life, then the
           difficulty of believing that a perfect and complex eye could be formed by natural selection, though
           insuperable by our imagination, can hardly be considered real.[92]
    Similarly, Richard Dawkins said on the topic of the evolution of the feather in an interview for the television
    program The Atheism Tapes:
           There's got to be a series of advantages all the way in the feather. If you can't think of one, then that's
           your problem not natural selection's problem... It's perfectly possible feathers began as fluffy extensions
           of reptilian scales to act as insulators... The earliest feathers might have been a different approach to
           hairiness among reptiles keeping warm.
    Creationist arguments have been made such as "What use is half an eye?" and "What use is half a wing?".[127]
    Research has confirmed that the natural evolution of the eye and other intricate organs is entirely feasible.[128] [129]
    Creationist claims have persisted that such complexity evolving without a designer is inconceivable, however, and
    this objection to evolution has been refined in recent years as the more sophisticated irreducible complexity
Objections to evolution                                                                                                          372
    Creation of information
    Another new, and increasingly common, objection of creationists to evolution is that evolutionary mechanisms such
    as mutation cannot generate new information. Creationists such as William A. Dembski, Werner Gitt, and Lee
    Spetner have attempted to use information theory to dispute evolution. Dembski has argued that life demonstrates
    specified complexity, and that evolution without an intelligent agent cannot account for the generation of
    information that would be required to produce specified complexity. The Christian apologetics site Answers in
    Genesis, for example, makes frequent appeals to concepts from information theory in its objections to evolution and
    affirmations of the Genesis account of Creation; "[I]t should be clear that a rigorous application of the science of
    information is devastating to materialistic philosophy in the guise of evolution, and strongly supportive of Genesis
    creation."[138]
    However, these claims have been widely rejected by the scientific community; new information is regularly
    generated in evolution, whenever a novel mutation or gene duplication arises. Dramatic examples of entirely new,
    unique traits arising through mutation have been observed in recent years, such as the evolution of nylon-eating
    bacteria, which developed new enzymes to efficiently digest a material that never existed before the modern era.[139]
    [140]
          In fact, when an organism is considered together with the environment it evolved in, there is no need to account
    for the creation of information. The information in the genome forms a record of how it was possible to survive in a
    particular environment. It is not created, but rather gathered from the environment through research—by trial and
    error, as mutating organisms either reproduce or fail.[141]
    A related argument against evolution is that most mutations are harmful.[142] However, in reality the vast majority of
    mutations are neutral, and the minority of mutations which are beneficial or harmful are often situational; a mutation
    that is harmful in one environment may be helpful in another.[143]
Objections to evolution                                                                                                       373
    Moral implications
    Other common objections to evolution allege that evolution leads to objectionable results, including bad beliefs,
    behaviors, and events. It is argued that the teaching of evolution degrades values, undermines morals, and fosters
    irreligion or atheism. These may be considered appeals to consequences (a form of logical fallacy), as the potential
    ramifications of belief in evolutionary theory have nothing to do with its objective empirical reality.
    Humans as animals
    Even though biology has long shown that humans are animals,
    some people feel that humans should be considered separate
    from, and/or superior to, animals. The mediaeval concept of a
    great chain of being set out a static hierarchy in which humans
    are "above" animals, but below angels and God. As
    evolutionary thought developed it was feared that evolution
    implied that there was no real separation between man and
    brute, and that it undermined human social hierarchy.
    Assertions of ape ancestry in the 1844 publication Vestiges of
    Creation gained much public acceptance but were scornfully
    attacked by establishment scientists, and though Darwin                                          1871 caricature of Charles
    avoided the subject when announcing his theory in On the                                       Darwin as an ape, accompanied
    Origin of Species in 1859, the issue was quickly raised.                                      by a satirical disclaimer claiming
                                                                                                        a fait accompli for its
    Anatomists claimed that humans had unique physical features;                                                      [149]
                                                                                                            inclusion
    however, English biologist Thomas Henry Huxley showed
    that they were wrong and overcame their opposition to
    Darwin's ideas. Evolutionary common descent does not imply
    that human beings should behave like other animals, but
    instead shows that animals behave in different ways, and
    teaches that humans behave like humans.[150]
    Social effects
    Some Creationists claim that perceived social ills like crime, teen pregnancies, homosexuality, abortion, immorality,
    wars and genocide are caused by a belief in evolution.[153] R. Albert Mohler, Jr., President of Southern Baptist
    Theological Seminary in Louisville, Kentucky, wrote August 8, 2005, in National Public Radio's forum, "Taking
    Issue", that "Debates over education, abortion, environmentalism, homosexuality and a host of other issues are really
    debates about the origin—and thus the meaning—of human life.... Evolutionary theory stands at the base of moral
    relativism and the rejection of traditional morality".[154] [155] Creationist Ken Ham likens evolution to a horde of
    termites, weakening society's foundation. In Why Won't They Listen?, Ham suggests that "evolutionary termites" are
    responsible for pornography, homosexual behavior and lawlessness. He also writes, "I'm not saying that evolution is
Objections to evolution                                                                                                         375
    the cause of abortion or school violence. What I'm saying is that the more a culture abandons God's word as the
    absolute authority, and the more a culture accepts an evolutionary philosophy, then the way people think, and their
    attitudes, will also change."[156]
    Former Texas Republican Representative Tom DeLay claimed that the Columbine school shootings were caused by
    the teaching of evolution. DeLay is quoted as stating that "Our school systems teach the children that they are
    nothing but glorified apes who are evolutionized [sic] out of some primordial soup."[157] Henry M. Morris,
    engineering professor and founder of the Creation Research Society and the Institute of Creation Research, claims
    that evolution was part of a pagan religion that emerged after the Tower of Babel, was part of Plato's and Aristotle's
    philosophies, and was responsible for everything from war to pornography to the breakup of the nuclear family.[158]
    Rev. D. James Kennedy of The Center for Reclaiming America for Christ and Coral Ridge Ministries claims that
    Darwin was responsible for Adolf Hitler's atrocities. In D. James Kennedy's documentary, and the accompanying
    pamphlet with the same title, Darwin’s Deadly Legacy, Kennedy states that "To put it simply, no Darwin, no Hitler."
    In his efforts to expose the "harmful effects that evolution is still having on our nation, our children, and our world",
    Kennedy also states that, "We have had 150 years of the theory of Darwinian evolution, and what has it brought us?
    Whether Darwin intended it or not, millions of deaths, the destruction of those deemed inferior, the devaluing of
    human life, increasing hopelessness."[159] [160] [161] Discovery Institute fellow Richard Weikart has made similar
    claims,[162] [163] as have other creationists.[164] The claim was central to Ben Stein's film Expelled: No Intelligence
    Allowed promoting intelligent design creationism. The Anti-Defamation League describes such claims as outrageous
    misuse of the the Holocaust and its imagery, and as trivializing "the many complex factors that led to the mass
    extermination of European Jewry. Hitler did not need Darwin or evolution to devise his heinous plan to exterminate
    the Jewish people, and Darwin and evolutionary theory cannot explain Hitler’s genocidal madness. Moreover,
    anti-Semitism existed long before Darwin ever wrote a word."[161] [165]
    Kent Hovind of Creation Science Evangelism blames communism, socialism, World War I, World War II, racism,
    the Holocaust, Stalin's war crimes, the Vietnam War and Pol Pot's Cambodian killing fields on evolution, as well as
    the increase in crime, unwed mothers, and other social ills.[82] Kent Hovind's son Eric Hovind has now taken over
    the family business while his father is in prison, and claims that evolution is responsible for tattoos, body piercing,
    premarital sex, unwed births, sexually transmitted diseases (STDs), divorce and child abuse.[166]
    Supporters of evolution dismiss such criticisms as counterfactual, and some argue that the opposite seems to be the
    case. A study published by the author and illustrator Gregory S. Paul found that religious beliefs, including belief in
    creationism and disbelief in evolution, are positively correlated with social ills like crime.[167] The Barna Group
    surveys find that Christians and non-Christians in the US have similar divorce rates, and the highest divorce rates in
    the US are among Baptists and Pentecostals, both sects which reject evolution and embrace creationism.[168]
    Michael Shermer argued in Scientific American in October 2006 that evolution supports concepts like family values,
    avoiding lies, fidelity, moral codes and the rule of law.[169] He goes on to suggest that evolution gives more support
    to the notion of an omnipotent creator, rather than a tinkerer with limitations based on a human model, the more
    common image subscribed to by creationists. Careful analyses of the creationist charges that evolution has led to
    moral relativism and the Holocaust yields the conclusion that these charges appear to be highly suspect.[170] Such
    analyses conclude that the origins of the Holocaust are more likely to be found in historical Christian anti-semitism
    than in evolution.[171] [172]
    Evolution has been used to justify Social Darwinism, the exploitation of "lesser breeds without the law" by "superior
    races," particularly in the nineteenth century.[173] Strong, typically European, nations successfully expanded their
    empires, and as such, these strong nations could be said to have "survived" in the struggle for dominance.[173] With
    this attitude, Europeans, with the exception of Christian missionaries, seldom adopted the customs and languages of
    local people under their empires.[173]
Objections to evolution                                                                                                           376
    Atheism
    Another charge leveled at evolutionary theory by creationists is that belief in evolution is either tantamount to
    atheism, or conducive to atheism.[174] It is commonly claimed that all proponents of evolutionary theory are
    "materialistic atheists".[175] On the other hand, Davis Young argues that Creation Science itself is harmful to
    Christianity because its bad science will turn more away than it recruits. Young asks, "Can we seriously expect
    non-Christians to develop a respect for Christianity if we insist on teaching the brand of science that creationism
    brings with it?"[176] However, evolution neither requires nor rules out the existence of a supernatural being.
    Philosopher Robert Pennock makes the comparison that evolution is no more atheistic than plumbing.[177] H. Allen
    Orr, professor of biology at University of Rochester, notes that:
           Of the five founding fathers of twentieth-century evolutionary biology — Ronald Fisher, Sewall Wright, J. B.
           S. Haldane, Ernst Mayr, and Theodosius Dobzhansky — one was a devout Anglican who preached sermons
           and published articles in church magazines, one a practicing Unitarian, one a dabbler in Eastern mysticism,
           one an apparent atheist, and one a member of the Russian Orthodox Church and the author of a book on
           religion and science.[178]
    In addition, a wide range of religions have reconciled a belief in a supernatural being with evolution.[179] Molleen
    Matsumura of the National Center for Science Education found that "of Americans in the twelve largest Christian
    denominations, 89.6% belong to churches that support evolution education". These churches include the United
    Methodist Church, National Baptist Convention USA, Evangelical Lutheran Church in America, Presbyterian
    Church (USA), National Baptist Convention of America, African Methodist Episcopal Church, the Roman Catholic
    Church, the Episcopal Church, and others.[180] A poll in 2000 done for People for the American Way found that 70%
    of the American public felt that evolution was compatible with a belief in God. Only 48% of the people polled could
    choose the correct definition of evolution from a list, however.[181]
    One poll reported in the journal Nature showed that among American scientists (across various disciplines), about 40
    percent believe in both evolution and an active deity (theistic evolution).[182] This is similar to the results reported
    for surveys of the general American public. Also, about 40 percent of the scientists polled believe in a God that
    answers prayers, and believe in immortality.[183] While about 55% of scientists surveyed were atheists, agnostics, or
    nonreligious theists, atheism is far from universal among scientists who support evolution, or among the general
    public that supports evolution. Very similar results were reported from a 1997 Gallup survey of the American public
    and scientists.[184]
             [184]         Belief in Young Earth         Belief in God-guided       Belief in evolution without God guiding the
       Group
                                Creationism                    evolution                               process
    See also
    • Faith and rationality
    Notes
    [1] Johnston, Ian C. (1999). "Section Three: The Origins of Evolutionary Theory" (http:/ / records. viu. ca/ ~johnstoi/ darwin/ title. htm). ... And
        Still We Evolve. Liberal Studies Department, Malaspina University College. . Retrieved 2007-07-25.
    [2] van Wyhe, John (2002-7). "Charles Darwin: gentleman naturalist: A biographical sketch" (http:/ / darwin-online. org. uk/ darwin. html). The
        Complete Work of Charles Darwin Online. University of Cambridge. . Retrieved 2007-07-25.
    [3] IAP Statement on the Teaching of Evolution (http:/ / www. interacademies. net/ Object. File/ Master/ 6/ 150/ Evolution statement. pdf),
        Interacademy Panel
    [4] In his comprehensive treatise on Creationism, The Creationists, historian Ronald Numbers traces the religious motivations and scientific
        pretensions, of prominent creationists from George Frederick Wright through George McCready Price, Harry Rimmer, John C. Whitcomb,
        Henry M. Morris and his Institute for Creation Research (and lesser figures) to Phillip E. Johnson and the Intelligent design movement.
        Numbers, Ronald (November 30, 2006). The Creationists: From Scientific Creationism to Intelligent Design, Expanded Edition. Harvard
        University Press. p. 624 pages. ISBN 0674023390.
    [5] Godfrey, Laurie R. Scientists Confront Creationism. Pg 8. W. W. Norton & Company (1984). ISBN 0-393-30154-0.
    [6] Sarfati, Jonathan & Matthews, Michael (2000). Argument: Creationism is religion, not science (http:/ / www. answersingenesis. org/
        get-answers/ topic/ religion). Answers in Genesis.
    [7] "Statement on the Teaching of Evolution" (http:/ / www. aaas. org/ news/ releases/ 2006/ pdf/ 0219boardstatement. pdf) (PDF). American
        Association for the Advancement of Science. 2006. . Retrieved 2007-03-20.
    [8] Abdul Majid (2002). "The Muslim Responses To Evolution" (http:/ / diberri. dyndns. org/ cgi-bin/ templatefiller/ ?type=& id=) (html).
        Islamic Research Foundation International, Inc.. . Retrieved 2010-05-24.
    [9] "Worldwide creationism, Shotgun stunner, and more" (http:/ / www. newscientist. com/ article/ mg20327153.
        900-worldwide-creationism-shotgun-stunner-and-more. html) (html). New Scientist. . Retrieved 2010-05-24.
    [10] "About Us" (http:/ / creation. com/ about-us#who_we_are) (html). . Retrieved 2010-05-24.
    [11] "Opinions on evolution from ten countries | NCSE" (http:/ / ncse. com/ news/ 2009/ 07/ opinions-evolution-from-ten-countries-004885)
        (html). National Center for Science Education. . Retrieved 2010-06-14.
    [12] Moran, Laurence (1993). "What is Evolution?" (http:/ / www. talkorigins. org/ faqs/ evolution-definition. html). The TalkOrigins Archive
        (http:/ / www. talkorigins. org). . Retrieved 2007-03-24.
    [13] "Ask the experts:Biology-Is the human race evolving or devolving?" (http:/ / www. scientificamerican. com/ article.
        cfm?id=is-the-human-race-evolvin). Scientific American. 1998. . Retrieved 2007-03-24.
    [14] Carroll SB (2001). "Chance and necessity: the evolution of morphological complexity and diversity". Nature 409 (6823): 1102–9.
        doi:10.1038/35059227. PMID 11234024.
    [15] "CA212: Definition of evolution" (http:/ / www. talkorigins. org/ indexcc/ CA/ CA212. html) (HTML). talkorigins.org. . Retrieved
        2010-06-07.
    [16] Doolan, Robert (1996). "Oh! My aching wisdom teeth!" (http:/ / www. answersingenesis. org/ creation/ v18/ i3/ wisdom_teeth. asp).
        Answers in Genesis. . Retrieved 2007-03-24.
    [17] AboutDarwin.com (http:/ / www. aboutdarwin. com/ timeline/ November. html)
    [18] England, P.; Molnar, P.; Righter, F. (January 2007). "John Perry's neglected critique of Kelvin's age for the Earth: A missed opportunity in
        geodynamics". GSA Today 17 (1): 4–9. doi:10.1130/GSAT01701A.1.
    [19] Boltwood, B. B. (1907). "On the ultimate disintegration products of the radio-active elements. Part II. The disintegration products of
        uranium". American Journal of Science 23: 77–88.
    [20] Bowler, Peter J. (1983). The eclipse of Darwinism: anti-Darwinian evolution theories in the decades around 1900 (paperback ed.).
        Baltimore: Johns Hopkins University Press. pp. 23–24. ISBN 0-8018-4391-X.
    [21] Bowler, PJ (2003). Evolution: The History of an Idea, Third Edition, Completely Revised and Expanded. University of California Press.
        ISBN 978-0520236936.
    [22] Moore, James R. (1981). The Post-Darwinian Controversies: A Study of the Protestant Struggle to Come to Terms with Darwin in Great
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        htm#LECTURE_IV) Lecture IV of Eight Lectures Preached Before the University of Oxford in 1884
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        2010-05-24.
Objections to evolution                                                                                                                                 378
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Objections to evolution                                                                                                                                   379
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       The TalkOrigins Archive (http:/ / www. talkorigins. org). . Retrieved 2008-07-13.
    [110] Isaak, M (2004). "Index to Creationist Claims, CC200.1: Transitional fossil abundance" (http:/ / www. talkorigins. org/ indexcc/ CC/
       CC200_1. html). The TalkOrigins Archive (http:/ / www. talkorigins. org). . Retrieved 2008-07-13.
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       CC363. html). The TalkOrigins Archive (http:/ / www. talkorigins. org). . Retrieved 2007-03-24.
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       www. talkorigins. org). . Retrieved 2007-03-24.
    [115] Battern, D (1995). "Cheating with chance" (http:/ / creation. com/ cheating-with-chance). Answers in Genesis. . Retrieved 2009-12-06.
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    [118] Plantinga, A (1993). Warrant and Proper Function. Oxford University Press. doi:10.1093/0195078640.001.0001. ISBN 0-19-507864-0.
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       . Retrieved 2007-03-24.
    [120] Isaak, M (2005). "Index to Creationist Claims, Claim CA120: Mind's fallibility" (http:/ / www. talkorigins. org/ indexcc/ CA/ CA120.
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    [121] Behe, MJ (1996-10-29). "Darwin under the microscope" (http:/ / www. arn. org/ docs/ behe/ mb_dm11496. htm). New York Times. p. 25. .
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    [122] Johnson, P (1990). "Evolution as dogma: The establishment of naturalism" (http:/ / www. arn. org/ docs/ johnson/ pjdogma1. htm). .
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    [123] "CB401: Inconceivable instinct" (http:/ / www. talkorigins. org/ indexcc/ CB/ CB401. html). . Retrieved 2009-12-05.
    [124] "CB400: Evolution of consciousness" (http:/ / www. talkorigins. org/ indexcc/ CB/ CB400. html). . Retrieved 2009-12-05.
Objections to evolution                                                                                                                                     381
    [125] Isaak, M (2004). "Index to Creationist Claims, Claim CE440: The origin of it all" (http:/ / www. talkorigins. org/ indexcc/ CE/ CE440.
       html). theTalkOrigins Archive (http:/ / www. talkorigins. org). . Retrieved 2007-03-24.
    [126] Jonathan Sarfati, Ph.D; 2003 Refuting Evolution 2. Master Books ISBN 0-89051-387-2
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       html). The TalkOrigins Archive (http:/ / www. talkorigins. org). . Retrieved 2007-03-24.; and references therein
    [134] Ussery, D. (1999). "A biochemist's response to "The biochemical challenge to evolution"" (http:/ / www. cbs. dtu. dk/ staff/ dave/ Behe.
       html). Bios 70: 40–45. .
    [135] Aharoni, A.; Gaidukov, L.; Khersonsky, O.; Gould, S.M.; Roodveldt, C; Tawfik, D.S. (2005). "The 'evolvability' of promiscuous protein
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    [137] Sanz, V.C. (2009). "Darwin's golden flame. Responses of biochemistry to intelligent design". Teorema 28: 173–188.
    [138] Gitt, Werner (1996). Information, science and biology (http:/ / www. answersingenesis. org/ tj/ v10/ i2/ information. asp). Answers in
       Genesis.
    [139] Musgrave, I; Baldwin, R, et al. (2005). "Information Theory and Creationism" (http:/ / www. talkorigins. org/ faqs/ information/
       infotheory. html). The TalkOrigins Archive (http:/ / www. talkorigins. org). . Retrieved 2007-03-24.
    [140] Thomas, D. "Evolution and Information: The Nylon Bug" (http:/ / www. nmsr. org/ nylon. htm). New Mexicans for Science and Reason. .
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    [141] Bergstrom, CT; Lachmann, M (2006). "The fitness value of information" (http:/ / arxiv. org/ pdf/ q-bio. PE/ 0510007). . Retrieved
       2007-03-24.
    [142] "CB101: Most mutations harmful?" (http:/ / www. talkorigins. org/ indexcc/ CB/ CB101. html) (html). talkorigins.org. . Retrieved
       2010-05-30.
    [143] Harter, R (1999). "Are Mutations Harmful?" (http:/ / www. talkorigins. org/ faqs/ mutations. html). The TalkOrigins Archive (http:/ / www.
       talkorigins. org). . Retrieved 2007-03-24.
    [144] Lambert, F (2002). "Disorder — A Cracked Crutch For Supporting Entropy Discussions" (http:/ / www. entropysite. com/ cracked_crutch.
       html). Journal of Chemical Education 79: 187–192. doi:10.1021/ed079p187. . Retrieved 2007-03-24.
    [145] Oerter, RN (2006). "Does Life On Earth Violate the Second Law of Thermodynamics?" (http:/ / physics. gmu. edu/ ~roerter/
       EvolutionEntropy. htm). . Retrieved 2007-03-24.
    [146] Daniel F. Styer, "Entropy and evolution," American Journal of Physics, Vol. 76, No. 11, November 2008, p. 1031
    [147] Emory F. Bunn, "Evolution and the Second Lqw of Thermodynamics," American Journal of Physics, Vol. 77, No. 10, October 2009, p. 922
    [148] Rosenhouse, J (2001). "How Anti-Evolutionists Abuse Mathematics" (http:/ / www. math. jmu. edu/ ~rosenhjd/ sewell. pdf) (PDF). The
       Mathematical Intelligencer 23 (4): 3–8. . Retrieved 2007-03-26.
    [149] A venerable Orang-utang (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=image& itemID=CUL-DAR141. 5& pageseq=1) "I
       have to apologize once more for the wild flights of my incorrigible artist. I told him most clearly and positively to draw me a life-like portrait
       of that profound philosopher, Mr. Darwin..." – The Hornet, 1871, from the collection of Darwin Online
    [150] Isaak, M (2004). "Claim CA009: Evolution teaches that people are animals. We should not be surprised when people who are taught
       evolution start behaving like animals" (http:/ / www. talkorigins. org/ indexcc/ CA/ CA009. html). The TalkOrigins Archive (http:/ / www.
       talkorigins. org). . Retrieved 2007-03-24.
    [151] Churches urged to challenge Intelligent Design (http:/ / www. ekklesia. co. uk/ content/ news_syndication/ article_060220creationism.
       shtml)
    [152] Pope John Paul II, "Truth Cannot Contradict Truth", New Advent, ed. Kevin Knight, 2009-Feb-15
       <http://www.newadvent.org/library/docs_jp02tc.htm>
    [153] Morris, H (1982). The Troubled Waters of Evolution. Master Books. ISBN 978-0890510872.
    [154] Mohler, RA (2005). "The Origins of Life: An Evangelical Baptist View" (http:/ / www. npr. org/ templates/ story/ story.
       php?storyId=4760816). NPR (http:/ / www. npr. org). . Retrieved 2007-03-24.
    [155] "The Result of Believing Evolution" (http:/ / www. lwbc. co. uk/ Genesis/ results of believing evolution. htm). Living Word Bible Church
       (http:/ / www. lwbc. co. uk/ index. htm). . Retrieved 2007-03-24.
    [156] Ham, K (2002). Why Won't They Listen? A Radical New Approach to Evangelism (http:/ / www. answersingenesis. org/ home/ area/
       WWTL/ index. asp). Master Books. ISBN 0890513783. .
Objections to evolution                                                                                                                                     382
    [157] Raymo, C (1999-09-06). "Darwin's Dangerous De-evolution" (http:/ / www. boston. com/ globe/ search/ stories/ reprints/ darwin100199.
       htm). Boston Globe. . Retrieved 2007-03-24.
    [158] Morris, HM (1989). The Long War Against God: The History and Impact of the Creation/Evolution Conflict. Baker Book House.
       ISBN 0-89051-291-4.
    [159] "Kennedy: Evolution to Blame for Death, Hopelessness in World" (http:/ / www. rightwingwatch. org/ 2006/ 08/ kennedy_evoluti. html).
       Right Wing Watch. . Retrieved 2007-03-24.
    [160] Martin, A; Parker, J (2006). "TV Producer Defends Documentary Exposing Darwin-Hitler Link" (http:/ / headlines. agapepress. org/
       archive/ 8/ 252006b. asp). Agape Press (http:/ / headlines. agapepress. org). . Retrieved 2007-03-24.
    [161] "ADL Blasts Christian Supremacist TV Special & Book Blaming Darwin For Hitler" (http:/ / www. adl. org/ PresRele/ HolNa_52/
       4877_52. htm). Anti-Defamation League. August 22, 2006. . Retrieved 2009-12-07.
    [162] Weikart, R (2004). From Darwin to Hitler: Evolutionary Ethics, Eugenics, and Racism in Germany. Palgrave Macmillan.
       ISBN 978-1403972019.
    [163] From Darwin to Hitler: A Pathway to Horror (Updated) (http:/ / www. evolutionnews. org/ 2006/ 12/ from_darwin_to_hitler_a_straig.
       html#more), Jonathan Witt, Evolution News and Views, Discovery Institute, December 15, 2006.
    [164] This creationist claim that is part of a Discovery Institute campaign ( New book by Discovery Institute Fellow shows influence of
       Darwinian principles on Hitler's Nazi regime (http:/ / www. darwintohitler. com/ ), Discovery Institute) and is amply repeated in creationist
       literature. For example:
       •   Darwinism and the Nazi race Holocaust (http:/ / www. answersingenesis. org/ tj/ v13/ i2/ nazi. asp), Jerry Bergman, CEN Technical
           Journal, 13(2):101–111, 1999.
       •   The Holocaust and evolution (http:/ / creation. com/ the-holocaust-and-evolution), Jonathan Sarfati, Creation 22(1):4, December 1999.
       •   From Darwin to Hitler: Evolutionary Ethics, Eugenics, and Racism in Germany (http:/ / web. csustan. edu/ History/ Faculty/ Weikart/
           FromDarwintoHitler. htm), Richard Weikart, Palgrave MacMillan, 2004.
    [165] "Anti-Evolution Film Misappropriates the Holocaust" (http:/ / www. adl. org/ PresRele/ HolNa_52/ 5277_52. htm). Anti-Defamation
       League. April 29, 2008. . Retrieved 2009-12-07.
       "Intelligent Design: It's Not Science – Religious Freedom Resources" (http:/ / www. adl. org/ religious_freedom/ resource_kit/
       intelligent_design. asp). Anti-Defamation League. 2009. . Retrieved 2009-12-07.
    [166] Creationist Links Origins to Faith, Everyday Life: Says outlook on Genesis account affects every aspect of life (http:/ / www. dakotavoice.
       com/ 200605/ 20060507_1. html), Bob Ellis, Dakota Voice, 5/7/2006
    [167] Paul, GS (2005). "Cross-National Correlations of Quantifiable Societal Health with Popular Religiosity and Secularism in the Prosperous
       Democracies: A First Look" (http:/ / moses. creighton. edu/ JRS/ 2005/ 2005-11. html). Journal of Religion & Society 7. . Retrieved
       2007-03-24.
       The paper was criticized by Moreno-Riaño, Smith, and Mach in a published article in the same journal (http:/ / moses. creighton. edu/ JRS/
       2006/ 2006-1. html) because "[Paul's] methodological problems do not allow for any conclusive statement to be advanced regarding the
       various hypotheses Paul seeks to demonstrate or falsify." Of course, correlation does not imply causality, and Paul does not produce any
       speculations about the cause of these correlations.
    [168] "Born Again Christians Just As Likely to Divorce As Are Non-Christians" (http:/ / www. barna. org/ barna-update/ article/ 5-barna-update/
       194-born-again-christians-just-as-likely-to-divorce-as-are-non-christians). The Barna Group (http:/ / www. barna. org). 2004. . Retrieved
       2004-03-24.
    [169] Shermer, M (2006). "Darwin on the Right: Why Christians and conservatives should accept evolution" (http:/ / www. sciam. com/ article.
       cfm?chanID=sa006& articleID=00068F43-E189-150E-A18983414B7F0000& colID=13). Scientific American. . Retrieved 2007-04-26.
    [170] Darwin and Hitler: a not-very-intelligent link (http:/ / pqasb. pqarchiver. com/ tallahassee/ access/ 1715211751. html?FMT=ABS&
       amp;date=Feb+ 06,+ 2008), Michael Ruse, My View, Tallahassee Democrat, February 6, 2008
    [171] Talkorigins Claim CA006.1: Adolf Hitler exploited the racist ideas of Darwinism to justify genocide (http:/ / www. talkorigins. org/
       indexcc/ CA/ CA006_1. html), Mark Isaak, Index to Creationist Claims, Talkorigins, created 2001-4-29, modified 2005-7-1, © 2006
    [172] Creationists for Genocide (http:/ / www. talkreason. org/ articles/ Genocide. cfm), Hector Avalos, Talkreason
    [173] "Western Civilization: Ideas, Politics, and Society" (http:/ / books. google. com/ books?id=kKGgoNo4un0C& pg=PA653& lpg=PA653).
       Houghton Mifflin Harcourt Publishing Company. . Retrieved 2007–03–25. "The most extreme ideological expression of nationalism and
       imperialism was Social Darwinism. In the popular mind, the concepts of evolution justified the exploitation of "lesser breeds without the law"
       by superior races. This language of race and conflict, of superior and inferior people, had wide currency in the Western states. Social
       Darwinists vigorously advocated the acquisition of empires, saying that strong nations-by definition, those that were successful at expanding
       industry and empire-would survive and that others would not. To these elitists, all white men were more fit than non-whites to prevail in the
       struggle for dominance. Even among Europeans, some nations were deemed more fit than others for the competition. Usually, Social
       Darwinists thought their own nation the best, an attitude that sparked their competitive enthusiasm. In the nineteenth century, in contrast to the
       seventeenth and eighteenth centuries, Europeans, except for missionaries, rarely adopted the customs or learned the languages of local people.
       They had little sense that other cultures and other people had merit or deserved respect. Many westerners believed that it was their duty as
       Christians to set an example and to educate others. Missionaries were the first to meet and learn about many peoples and were the first to
       develop writing for those without a written language. Christian missionaries were ardently opposed to slavery."
    [174] Strobel, Lee (2004). The Case for a Creator. Zondervan. p. 32. ISBN 0310241448. "In my quest to determine if contemporary science
       points toward or away from God, I knew I had to first examine the claims of evolution in order to conclude once and for all whether
Objections to evolution                                                                                                                            383
       Darwinism creates a reasonable foundation for atheism. That's because if the materialism of Darwinian evolution is a fact, then the atheist
       conclusions I reached as a student might still be valid."
    [175] Johnson, Phillip (1999). "The Church of Darwin" (http:/ / www. arn. org/ docs/ johnson/ chofdarwin. htm). Wall Street Journal. . Retrieved
       2010-05-23.
    [176] Young, D (1988). Christianity and the Age of the Earth. Artisan Publishers. ISBN 093466627X.
    [177] Pennock, RT (2000). Tower of Babel: The Evidence Against the New Creationism (http:/ / ncse. com/ store/ title/ tower-babel). MIT Press.
       ISBN 978-0262661652. . Retrieved 2007-03-24.
    [178] Devolution: Why intelligent design isn’t (http:/ / www. newyorker. com/ archive/ 2005/ 05/ 30/ 050530fa_fact?currentPage=1), H. Allen
       Orr, Annals of Science, The New Yorker, May 30, 2005.
    [179] "Statements from Religious Organizations" (http:/ / ncse. com/ media/ voices/ religion). National Center for Science Education. 2002. .
       Retrieved 2007-03-24.
    [180] Schrock, JR (2005-05-17). "Christianity, Evolution Not in Conflict" (http:/ / www. emporia. edu/ biosci/ schrock/ docs/ Eagle-25. pdf)
       (PDF). Wichita Eagle. pp. 17A. . Retrieved 2007-03-24.
    [181] "Evolution and Creationism In Public Education: An In-depth Reading Of Public Opinion" (http:/ / docs. google. com/ viewer?a=v&
       q=cache:UDwdl6q3IgwJ:67. 192. 238. 59/ multimedia/ pdf/ Reports/ evolutionandcreationisminpubliceducation. pdf+
       evolutionandcreationisminpubliceducation. pdf& hl=en& gl=ca& pid=bl&
       srcid=ADGEESj-27vCwtszKiottg8mjbOKovsUvtJqRXXlLit-R3VitD5tlX4OfMPkfEEzNwQjvUSioQSua6y3LN1SR72877bW3dc6wFzFlG2pFdWl-21CVU68FW
       sig=AHIEtbQjqyUehD_pbin4wiuZlHKkn--pTA) (PDF). People for the American Way. 2002. . Retrieved 2007-03-24.
    [182] Larson, EJ; Witham, L (1997). "Scientists are still keeping the faith". Nature 386: 435–436. doi:10.1038/386435a0.
    [183] Witham, L (1997). "Many scientists see God's hand in evolution" (http:/ / ncse. com/ rncse/ 17/ 6/
       many-scientists-see-gods-hand-evolution). Reports of the National Center for Science Education 17 (6): 33. . Retrieved 2007-03-24.
    [184] Robinson, BA (1995). "Public beliefs about evolution and creation" (http:/ / www. religioustolerance. org/ ev_publi. htm). . Retrieved
       2007-03-24.
    Further reading
    • Philip Kitcher 1982 Abusing Science: The Case Against Creationism. Cambridge: The MIT Press
    • Jonathan Sarfati, Ph.D; 2003 Refuting Evolution 2. Master Books ISBN 0-89051-387-2
    • Coleman, Simon; Leslie Carlin (2004). The Cultures of Creationism: Antievolution in English-speaking
      Countries. Burlington, Vermont: Ashgate. p. 195. ISBN 075460912X.
    • Isaak, Mark (2005). The Counter-Creationism Handbook. Westport, Connecticut: Greenwood Press. p. 330.
      ISBN 031333305X.
    • Rennie J (July 2002). "15 answers to creationist nonsense" (http://www.swarthmore.edu/NatSci/cpurrin1/
      textbookdisclaimers/wackononsense.pdf) (PDF). Sci. Am. 287 (1): 78–85.
      doi:10.1038/scientificamerican0702-78. PMID 12085506.
Creationism                                                                                                                     384
    Creationism
          "Creationism" can also refer to creation myths, or to a concept about the origin of the soul. For the movement
          in Spanish literature, see Creacionismo.
    Creationism is the religious belief[1] that humanity, life, the Earth, and the universe are the creation of a
    supernatural being. However, the term is more commonly used to refer to religiously motivated rejection of certain
    biological processes, in particular much of evolution, as an explanation accounting for the history, diversity, and
    complexity of life on earth.[2] As science developed from the 18th century onwards, various views developed which
    aimed to reconcile science with the Genesis creation narrative.[3] At this time those holding that species had been
    separately created were generally called "advocates of creation" but they were occasionally called "creationists" in
    private correspondence between Charles Darwin and his friends. As the creation–evolution controversy developed,
    the term "anti-evolutionists" became more common, then in 1929 in the United States the term "creationism" first
    became specifically associated with Christian fundamentalist opposition to human evolution and belief in a young
    Earth, though its usage was contested by other groups who believed in various concepts of creation.[4]
    Since the 1920s, creationism in America has contested scientific theories, such as that of evolution,[5] [6] which
    derive from natural observations of the universe and life. Strict creationists[7] believe that evolution cannot
    adequately account for the history, diversity, and complexity of life on Earth.[8] Strict creationists of the Christian
    faith usually base their belief on a literal reading of the Genesis creation narrative.[7] [9] Other religions have
    different deity-led creation myths,[10] [11] [12] [13] while different members of individual faiths vary in their
    acceptance of scientific findings. In contrast to the strict creationists, evolutionary creationists maintain that,
    although evolution accounts for the nature of the biosphere, evolution itself is cosmologically attributable to a
    Creator deity.[14]
    When mainstream scientific research produces theoretical conclusions which contradict a strict creationist
    interpretation of scripture, creationists often reject the conclusions of the research[15] or its underlying scientific
    theories[16] or its methodology.[17] The rejection of scientific findings has sparked political and theological
    controversy.[2] Two offshoots of creationism—creation science and intelligent design—have been characterized as
    pseudoscience by the mainstream scientific community.[18] The most notable disputes concern the evolution of living
    organisms, the idea of common descent, the geological history of the Earth, the formation of the solar system and the
    origin of the universe.[19] [20] [21] [22]
    History
    The history of creationism is part of the history of religions, though the term itself is modern. In the 1920s the term
    became particularly associated with Christian fundamentalist movements that insisted on a literalist interpretation of
    the Genesis creation narrative and likewise opposed the idea of human evolution. These groups succeeded in getting
    teaching of evolution banned in United States public schools, then from the mid-1960s the young Earth creationists
    promoted the teaching of "scientific creationism" using "Flood geology" in public school science classes as support
    for a purely literal reading of Genesis.[23] After the legal judgment of the case Daniel v. Waters (1975) ruled that
    teaching creationism in public schools contravened the Establishment Clause of the First Amendment, the content
    was stripped of overt biblical references and renamed creation science. When the court case Edwards v. Aguillard
    (1987) ruled that creation science similarly contravened the constitution, all references to "creation" in a draft school
    textbook were changed to refer to intelligent design, which was subsequently claimed to be a new scientific theory.
    The Kitzmiller v. Dover (2005) ruling concluded that intelligent design is not science and contravenes the
    constitutional restriction on teaching religion in public school science classes.[24]
Creationism                                                                                                                     385
    Natural theology
    From 1517 the Protestant Reformation brought a new emphasis on lay literacy, with Martin Luther advocating the
    idea that creation took six literal days about 6000 years ago, and claiming that "Moses wrote that uneducated men
    might have clear accounts of creation", though a German peasant listening to a translation would have different
    perceptions from a Jew familiar with early Jewish language and culture, and Luther still had to refer to allegorical
    understandings such as the meaning of the serpent. John Calvin also rejected instantaneous creation, but criticised
    those who, contradicting the contemporary understanding of nature, asserted that there are "waters above the
    heavens".[25]
    Discoveries of new lands brought knowledge of a huge diversity of life, and a new belief developed that each of
    these biological species had been individually created by God. In 1605 Francis Bacon emphasized that the works of
    God in nature teach us how to interpret the word of God in the Bible, and his Baconian method introduced the
    empirical approach which became central to modern science.[28] Natural theology developed the study of nature with
    the expectation of finding evidence supporting Christianity, and numerous attempts were made to reconcile new
    knowledge with the biblical Deluge myth and story of Noah's Ark.[29]
    In 1650 the Archbishop of Armagh, James Ussher, published the Ussher chronology based on Bible history giving a
    date for Creation of 4004 BC. This was generally accepted, but the development of modern geology in the 18th and
Creationism                                                                                                                     386
    19th centuries found geological strata and fossil sequences indicating an ancient Earth. Catastrophism was favoured
    in England as supporting the Biblical flood, but this was found to be untenable[29] and by 1850 all geologists and
    most Evangelical Christians had adopted various forms of old Earth creationism, while continuing to firmly reject
    evolution.[25]
    Theistic evolution
    Through the 19th century the term creationism most commonly referred to direct creation of individual souls, in
    contrast to traducianism. Following the publication of Vestiges there was interest in ideas of Creation by divine law.
    In particular, the liberal theologian Baden Powell argued that this illustrated the Creator's power better than the idea
    of miraculous creation, which he thought ridiculous.[33] When On the Origin of Species was published, the cleric
    Charles Kingsley wrote of evolution as "just as noble a conception of Deity".[34] [35] Darwin's view at the time was
    of God creating life through the laws of nature,[36] [37] and the book makes several references to "creation", though
    he later regretted using the term rather than calling it an unknown process.[38] In America, Asa Gray argued that
    evolution is the secondary effect, or modus operandi, of the first cause, design,[39] and published a pamphlet
    defending the book in theistic terms, Natural Selection is not inconsistent with Natural Theology.[34] [40] [41] Theistic
    evolution became a popular compromise, and St. George Jackson Mivart was among those accepting evolution but
    attacking Darwin's naturalistic mechanism. Eventually it was realised that supernatural intervention could not be a
    scientific explanation, and naturalistic mechanisms such as neo-Lamarckism were favoured as being more
    compatible with purpose than natural selection.[42]
    Some theists took the general view that, instead of faith being in opposition to biological evolution, some or all
    classical religious teachings about Christian God and creation are compatible with some or all of modern scientific
    theory, including specifically evolution; it is also known as "evolutionary creation". In Evolution Vs. Creationism,
    Eugenie Scott and Niles Eldredge state that it is in fact a type of evolution.[43]
    It generally views evolution as a tool used by God, who is both the first cause and immanent sustainer/upholder of
    the universe; it is therefore well accepted by people of strong theistic (as opposed to deistic) convictions. Theistic
    evolution can synthesize with the day-age interpretation of the Genesis creation narrative; however most adherents
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    consider that the first chapters of Genesis should not be interpreted as a "literal" description, but rather as a literary
    framework or allegory.
    From a theistic viewpoint, the underlying laws of nature were designed by God for a purpose, and are so
    self-sufficient that the complexity of the entire physical universe evolved from fundamental particles in processes
    such as stellar evolution, life forms developed in biological evolution, and in the same way the origin of life by
    natural causes has resulted from these laws.[44]
    In one form or another, theistic evolution is the view of creation taught at the majority of mainline Protestant
    seminaries[45] For Catholics, human evolution is not a matter of religious teaching, and must stand or fall on its own
    scientific merits. Evolution and the Roman Catholic Church are not in conflict. The Catechism of the Catholic
    Church comments positively on the theory of evolution, which is neither precluded nor required by the sources of
    faith, stating that scientific studies "have splendidly enriched our knowledge of the age and dimensions of the
    cosmos, the development of life-forms and the appearance of man."[46] Roman Catholic schools teach evolution
    without controversy on the basis that scientific knowledge does not extend beyond the physical, and scientific truth
    and religious truth cannot be in conflict.[47] Theistic evolution can be described as "creationism" in holding that
    divine intervention brought about the origin of life or that divine Laws govern formation of species, though many
    creationists (in the strict sense) would deny that the position is creationism at all. In the creation-evolution
    controversy its proponents generally take the "evolutionist" side. This sentiment was expressed by Fr. George Coyne,
    (Vatican's chief astronomer between 1978 and 2006):
          ...in America, creationism has come to mean some fundamentalistic, literal, scientific interpretation of
          Genesis. Judaic-Christian faith is radically creationist, but in a totally different sense. It is rooted in a
          belief that everything depends upon God, or better, all is a gift from God.[48]
    While supporting the methodological naturalism inherent in modern science, the proponents of theistic evolution
    reject the implication taken by some atheists that this gives credence to ontological materialism. In fact, many
    modern philosophers of science,[49] including atheists,[50] refer to the long standing convention in the scientific
    method that observable events in nature should be explained by natural causes, with the distinction that it does not
    assume the actual existence or non-existence of the supernatural.
    evolution.[23] In the 1920s, the Fundamentalist-Modernist Controversy led to an upsurge of fundamentalist religious
    fervor in which schools were prevented from teaching evolution through state laws such as Tennessee’s 1925 Butler
    Act,[51] [52] and by getting evolution removed from biology textbooks nationwide. Creationism became associated in
    common usage with opposition to evolution.[53]
    In 1961 in the United States, an attempt to repeal the Butler Act failed.[24] The Genesis Flood by the Baptist engineer
    Henry M. Morris brought the Seventh-day Adventist biblically literal flood geology of George McCready Price to a
    wider audience, popularizing a novel idea of Young Earth creationism,[25] and by 1965 the term "scientific
    creationism" had gained currency.[54] The 1968 Epperson v. Arkansas judgment ruled that state laws prohibiting the
    teaching of evolution violate the Establishment Clause of the First Amendment of the U.S. Constitution which
    prohibits state aid to religion.[55] and when in 1975 Daniel v. Waters ruled that a state law requiring biology
    textbooks discussing "origins or creation of man and his world" to give equal treatment to creation as per Book of
    Genesis was unconstitutional, a new group identifying themselves as creationists promoted a "Creation science"
    which omitted explicit biblical references.[24]
    In 1981 the state of Arkansas passed a law, Act 590, mandating that "creation science" be given equal time in public
    schools with evolution, and defining creation science as positing the “creation of the universe, energy, and life from
    nothing,” as well as explaining the earth’s geology by "the occurrence of a worldwide flood".[54] This was ruled
    unconstitutional at McLean v. Arkansas in January 1982 as the creationists' methods were not scientific but took the
    literal wording of the Book of Genesis and attempted to find scientific support for it.[54] Undaunted, Louisiana
    introduced similar legislation that year. A series of judgments and appeals led to the 1987 Supreme Court ruling in
    Edwards v. Aguillard that it too violated the Establishment Clause of the First Amendment.[52]
    "Creation science" could no longer be taught in public schools, and in drafts of the creation science school textbook
    Of Pandas and People all references to creation or creationism were changed to refer to intelligent design.[52]
    Proponents of the intelligent design movement organised widespread campaigning to considerable effect. They
    officially denied any links to creation or to religion, and indeed claimed that "creationism" only referred to young
    Earth creationism with flood geology;[56] but in Kitzmiller v. Dover the court found intelligent design to be
    essentially religious, and unable to dissociate itself from its creationist roots, as part of the ruling that teaching
    intelligent design in public school science classes was unconstitutional.[52]
    However, the percentage of people in the USA who accept the idea of evolution declined from 45% in 1985, to 40%
    in 2005.[57]
    Movements
    Creationist movements exist among peoples with various religions perspectives such as Judaism, Hinduism,
    Christianity and Islam.
    Bahá'í Faith
    The Bahá'í Faith holds the harmony of religion and science as a fundamental principle. Bahá'ís regards the biblical
    account of creation as symbolic, albeit important and full of symbolic meaning.[61] Far from accepting the idea of a
    Young Earth, Bahá'í theology regards the Earth as ancient.[62]
    Humanity, Bahá'ís hold, has changed in physical form over time. Bahá'í theology holds that humanity is a species
    essence - an essential reality and part of God's eternal creation; as a biological species, however, humanity has gone
    through numerous physical changes and adaptations in time.[62] The Bahá'í faith regards evolution (as a progress of
    physical form) and the act of divine creation as related processes or even as the same process viewed in different
    contexts. However, Bahá'í literature maintains that humanity is distinct from other parts of creation on Earth - that
    only mankind has a soul, and is capable of abstract thought and of spiritual development.[62]
    Opponents reject the claim that the literalistic Biblical view meets the criteria required to be considered scientific.
    Many religious sects teach that God created the Cosmos. From the days of the early Christian Church Fathers there
    were allegorical interpretations of Genesis as well as literal aspects.[25]
    Young Earth    Directly created by God.        Directly created by God. Macroevolution does     Less than 10,000 years old.        Less than 10,000
    creationism                                    not occur.                                       Reshaped by global flood.          years old.
         Gap       Directly created by God.        Directly created by God. Macroevolution does     Scientifically accepted age.       Scientifically
     creationism                                   not occur.                                       Reshaped by global flood.          accepted age.
     Progressive   Directly created by God     Direct creation + evolution. No single common Scientifically accepted age. No Scientifically
     creationism   (based on primate anatomy). ancestor.                                     global flood.                   accepted age.
     Intelligent   Proponents hold various         Divine intervention at some point in the past,   Some adherents claim the           Scientifically
       design      beliefs. e.g. Behe accepts      as evidenced by what intelligent-design          existence of Earth is the result   accepted age
                   evolution from primates         creationists call "irreducible complexity"       of divine intervention
       Theistic    Evolution from primates.        Evolution from single common ancestor.           Scientifically accepted age. No Scientifically
      evolution                                                                                     global flood.                   accepted age.
    Modern geocentrism
    Modern geocentrism holds that God recently created a spherical world, and placed it in the center of the universe.
    The Sun, planets and everything else in the universe revolve around it.
    Omphalos hypothesis
    The Omphalos hypothesis argues that in order for the world to be functional, God must have created a mature Earth
    with mountains and canyons, rock strata, trees with growth rings, and so on; therefore no evidence that we can see of
    the presumed age of the earth and universe can be taken as reliable.[79] The idea has seen some revival in the
    twentieth century by some modern creationists, who have extended the argument to light that appears to originate in
    far-off stars and galaxies (see Starlight problem).
    Creation science
    Creation science is the attempt to present scientific evidence interpreted with Genesis axioms that supports the
    claims of creationism. Various claims of creation scientists include such ideas as creationist cosmologies which
    accommodate a universe on the order of thousands of years old, attacks on the science of radiometric dating through
    a technical argument about radiohalos, explanations for the fossil record as a record of the destruction of the global
    flood recorded in Book of Genesis (see flood geology), and explanations for the present diversity as a result of
    pre-designed genetic variability and partially due to the rapid degradation of the perfect genomes God placed in
    "created kinds" or "Baramin" (see creation biology) due to mutations.
    Gap creationism
    Gap creationism, also called "Restitution creationism", holds that life was recently created on a pre-existing old
    Earth. This theory relies on a particular interpretation of Genesis  1:1-2. It is considered that the words formless and
    void in fact denote waste and ruin, taking into account the original Hebrew and other places these words are used in
    the Old Testament. Genesis 1:1-2 is consequently translated:
          "In the beginning God created the heavens and the earth." (Original act of creation.)
          "And the earth was without form, and void; and darkness was upon the face of the deep. And the Spirit of God
          moved upon the face of the waters."
    Thus, the six days of creation (verse 3 onwards) start sometime after the Earth was "without form and void." This
    allows an indefinite "gap" of time to be inserted after the original creation of the universe, but prior to creation
    according to the Genesis creation narrative(when present biological species and humanity were created). Gap
    theorists can therefore agree with the scientific consensus regarding the age of the Earth and universe, while
    maintaining a literal interpretation of the biblical text.
    Some gap theorists expand the basic theory by proposing a "primordial creation" of biological life within the "gap"
    of time. This is thought to be "the world that then was" mentioned in 2 Peter 3:3-7.[80] Discoveries of fossils and
    archaeological ruins older than 10,000 years are generally ascribed to this "world that then was", which may also be
    associated with Lucifer's rebellion. These views became popular with publications of Hebrew Lexicons such as the
    Strong's Concordance, and Bible commentaries such as the Scofield Reference Bible and the Companion Bible.
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    Day-Age creationism
    Day-Age creationism states that the "six days" of Book of Genesis are not ordinary twenty-four-hour days, but rather
    much longer periods (for instance, each "day" could be the equivalent of millions, or billions of years of human
    time). This theory often states that the Hebrew word "yôm", in the context of Genesis 1, can be properly interpreted
    as "age." Some adherents claim we are still living in the seventh age ("seventh day").
    Strictly speaking, Day-Age creationism is not so much a creationist theory as a hermeneutic option which may be
    combined with theories such as progressive creationism.
    Progressive creationism
    Progressive creationism holds that species have changed or evolved in a process continuously guided by God, with
    various ideas as to how the process operated—though it is generally taken that God directly intervened in the natural
    order at key moments in Earth/life's history. This view accepts most of modern physical science including the age of
    the earth, but rejects much of modern evolutionary biology or looks to it for evidence that evolution by natural
    selection alone is incorrect. Organizations such as Reasons to Believe, founded by Hugh Ross, promote this theory.
    Progressive creationism can be held in conjunction with hermeneutic approaches to Genesis chapter 1 such as the
    day-age theory or framework/metaphoric/poetic views.
    Neo-Creationism
    Neo-Creationists intentionally distance themselves from other forms of creationism, preferring to be known as
    wholly separate from creationism as a philosophy. Its goal is to restate creationism in terms more likely to be well
    received by the public, education policy makers and the scientific community. It aims to re-frame the debate over the
    origins of life in non-religious terms and without appeals to scripture, and to bring the debate before the public.
    One of its principal claims is that ostensibly objective orthodox science is actually a dogmatically atheistic religion.
    Neo-Creationists argue that the scientific method excludes certain explanations of phenomena, particularly where
    they point towards supernatural elements. They argue that this effectively excludes any possible religious insight
    from contributing to a scientific understanding of the universe. Neo-Creationists also argue that science, as an
    "atheistic enterprise," is at the root of many of contemporary society's ills including social unrest and family
    breakdown.
    The most recognized form of Neo-Creationism in the United States is the Intelligent Design movement. Unlike their
    philosophical forebears, Neo-Creationists largely do not believe in many of the traditional cornerstones of
    creationism such as a young Earth, or in a dogmatically literal interpretation of the Bible. Common to all forms of
    Neo-Creationism is a rejection of naturalism, usually made together with a tacit admission of supernaturalism, and
    an open and often hostile opposition to what they term "Darwinism", which generally is meant to refer to evolution.
    Intelligent design
    Intelligent design (ID) is the claim that "certain features of the universe and of living things are best explained by an
    intelligent cause, not an undirected process such as natural selection".[81] All of its leading proponents are associated
    with the Discovery Institute,[82] a think tank whose Wedge strategy aims to replace the scientific method with "a
    science consonant with Christian and theistic convictions" which accepts supernatural explanations.[52] [83] It is
    widely accepted in the scientific and academic communities that intelligent design is a form of creationism,[84] [77]
    [78] [85]
              and some have even begun referring to it as "intelligent design creationism".[86] [87] [88]
    ID originated as a re-branding of creation science in an attempt to get round a series of court decisions ruling out the
    teaching of creationism in U.S. public schools, and the Discovery Institute has run a series of campaigns to change
    school curricula.[24] In Australia, where curricula are under the control of State governments rather than local school
    boards, there was a public outcry when the notion of ID being taught in science classes was raised by the Federal
    Education Minister Brendan Nelson; the minister quickly conceded that the correct forum for ID, if it were to be
Creationism                                                                                                                     393
    Hinduism
    Some Hindus find support for, or foreshadowing of evolutionary ideas in scriptures, namely the Vedas.[91] The
    International Society for Krishna Consciousness (ISKCON) includes several members who actively oppose
    "Darwinism" and the modern evolutionary synthesis.[92]
    Islam
    Islamic creationism is the belief that the universe (including humanity) was directly created by God as explained in
    the Qur'an. It usually views Genesis as a corrupted version of God's message. The creation myths in the Qur'an are
    vaguer and allow for a wider range of interpretations similar to those in other Abrahamic religions. Most Muslims
    generally accept the scientific positions on the age of the earth, the age of the universe, however unlike Ahmadi
    Muslims, not evolution. Muslims believe that humans have been inserted on earth on a much later date from the
    creation of earth.
    Islam also has its own school of Evolutionary creationism/Theistic evolutionism, which holds that mainstream
    scientific analysis of the origin of the universe is supported by the Qur'an. Some Muslims believe in evolutionary
    creationism, especially among Liberal movements within Islam.
    Khalid Anees, president of the Islamic Society of Britain, at a conference called 'Creationism: Science and Faith in
    Schools', made points including the following:[93] There is no contradiction between what is revealed in the Koran
    and natural selection and survival of the fittest. However, some Muslims, such as Adnan Oktar, do not agree that one
    species can develop from another.[94]
    But there is also a growing movement of Islamic creationism. Similar to Christian creationism, there is concern
    regarding the perceived conflicts between the Qur'an and the main points of evolutionary theory. The main location
    for this has been in Turkey, where fewer than 25% of people believe in evolution.[95]
    There are several verses in the Qur'an which some modern writers have interpreted as being compatible with the
    expansion of the universe, Big Bang and Big Crunch theories:[96] [97] [98]
          "Do not the Unbelievers see that the skies (space) and the earth were joined together, then We (Allah)
          clove them asunder and We (Allah) created every living thing out of the water. Will they not then
          believe?"[Qur'an 21:30]
          "Then turned He to the sky (space) when it was smoke, and said unto it and unto the earth: Come both of
          you, willingly or loth. They said: We come, obedient."[Qur'an 41:11]
          "And it is We (Allah) Who have constructed the sky (space) with might, and it is We (Allah) Who are
          steadily expanding it."[Qur'an 51:47]
          "On the day when We (Allah) will roll up the sky (space) like the rolling up of the scroll for writings, as
          We (Allah) originated the first creation, (so) We (Allah) shall reproduce it; a promise (binding on Us);
          surely We will bring it about."[Qur'an 21:104]
    Many Islam majority countries have expelled science textbooks containing human evolution.[99]
Creationism                                                                                                                      394
    Judaism
    Judaism has a continuum of views about creation, the origin of life and the role of evolution in the formation of
    species. The major Jewish denominations, including many Orthodox Jewish groups, accept evolutionary creationism
    or theistic evolution. Many Conservative Rabbis follow theistic evolution, although Conservative Judaism does not
    have an official view on the subject. Conservative Judaism however, does generally embrace science and therefore
    finds it a "challenge to traditional Jewish theology."[100] Reform Judaism does not take the Torah as a literal text, but
    rather as a symbolic or open-ended work. For Orthodox Jews who seek to reconcile discrepancies between science
    and the Bible, the notion that science and the Bible should even be reconciled through traditional scientific means is
    questioned. To these groups, science is as true as the Torah and if there seems to be a problem, our own
    epistemological limits are to blame for any apparent irreconcilable point. They point to various discrepancies
    between what is expected and what actually is to demonstrate that things are not always as they appear. They point
    out the fact that the even root word for "world" in the Hebrew language — ( םלועOlam) — means hidden — םלענ
    (Neh-Eh-Lahm). Just as they believe God created man and trees and the light on its way from the stars in their adult
    state, so too can they believe that the world was created in its "adult" state, with the understanding that there are, and
    can be, no physical ways to verify it. This belief has been advanced by Rabbi Dr. Dovid Gottlieb, former philosophy
    professor at Johns Hopkins University. Also, relatively old Kabbalistic sources from well before the scientifically
    apparent age of the universe was first determined are in close concord with modern scientific estimates of the age of
    the universe, according to Rabbi Aryeh Kaplan, and based on Sefer Temunah, an early kabbalistic work attributed to
    the 1st century Tanna Nehunya ben ha-Kanah. Many kabbalists accepted the teachings of the Sefer Temunah,
    including the Ramban, his close student Yitzhak of Akko, and the RADBAZ. Other interesting parallels are derived,
    among other sources, from Nachmanides, who expounds that there was a Neanderthal-like species with which Adam
    mated (he did this long before Neanderthals had even been discovered scientifically).[101] [102] [103] [104] In 1838
    rabbi Israel Lipschitz again restated that the calculations of the ancient kabbalists that Creation occurred about 15.3
    billion years ago were in line with the 19th century scientific theories.
    Prevalence
    Most vocal strict creationists are from
    the United States, and strict creationist
    views are much less common in other
    developed countries. According to a
    study published in Science, a survey of
    the United States, Turkey, Japan and
    Europe showed that public acceptance
    of evolution is most prevalent in
    Iceland, Denmark and Sweden at 80%
    of the population.[57]
    Australia
    According to a PBS documentary on
    evolution, Australian Young Earth
    Creationists claimed that "five percent                  Views on human evolution in various countries.
                                                                                                            [105] [106]
    of the Australian population now
    believe that Earth is thousands, rather than billions, of years old."[107] A 2009 Nielsen poll showed that almost a
    quarter of Australians believe "the biblical account of human origins" over the Darwinian account. Forty-two percent
    believe in a "wholly scientific" explanation for the origins of life, while 32 percent believe in an evolutionary process
Creationism                                                                                                                    395
"guided by God".[108]
    Canada
    A 2008 Canadian poll revealed that "58 percent accept evolution, while 22 percent think that God created humans in
    their present form within the last 10,000 years."[109]
    Europe
    In Europe, strict creationism is less well accepted, though regular opinion polls are not available. Most people accept
    that evolution is the most widely accepted scientific theory as taught in most schools. In countries with a Roman
    Catholic majority, papal acceptance of evolution as worthy of study has essentially ended debate on the matter for
    many people.
    In the United Kingdom, the Archbishop of Canterbury Rowan Williams, head of the worldwide Anglican
    Communion, views the idea of teaching creationism in schools as a mistake.[110] A 2006 poll on the "origin and
    development of life" asked participants to choose between three different perspectives on the origin of life: 22%
    chose creationism, 17% opted for intelligent design, 48% selected evolutionary theory, and the rest did not
    know.[111] [112]
    Exceptionally, in the United Kingdom the Emmanuel Schools Foundation (previously the Vardy Foundation), which
    runs three government-funded 13 to 19 schools in the north of England (out of several thousand in the country)
    teaches that creationism and evolution are equally valid "faith positions". One exam board (OCR) also specifically
    mentions and deals with creationism in its biology syllabus.[113] However, this deals with it as a historical belief and
    addresses hostility towards evolution rather than promoting it as an alternative to naturalistic evolution. Mainstream
    scientific accounts are expressed as fact. In Italy, prime minister Silvio Berlusconi wanted to retire evolution from
    schools in the middle level; after one week of massive protests, he reversed his opinion.[114]
    There continues to be scattered and possibly mounting efforts on the part of religious fundamentalists throughout
    Europe to introduce creationism into public education.[115] In response, the Parliamentary Assembly of the Council
    of Europe has released a draft report entitled The dangers of creationism in education on June 8, 2007,[116]
    reinforced by a further proposal of banning it in schools dated October 4, 2007.[117]
    Serbia suspended the teaching of evolution for one week in September 2004, under education minister Ljiljana Čolić,
    only allowing schools to reintroduce evolution into the curriculum if they also taught creationism.[118] "After a
    deluge of protest from scientists, teachers and opposition parties" says the BBC report, Čolić's deputy made the
    statement, "I have come here to confirm Charles Darwin is still alive" and announced that the decision was
    reversed.[119] Čolić resigned after the government said that she had caused "problems that had started to reflect on
    the work of the entire government."[120]
    Poland saw a major controversy over creationism in 2006 when the deputy education minister, Mirosław
    Orzechowski, denounced evolution as "one of many lies" taught in Polish schools. His superior, Minister of
    Education Roman Giertych, has stated that the theory of evolution would continue to be taught in Polish schools, "as
    long as most scientists in our country say that it is the right theory." Giertych's father, Member of the European
    Parliament Maciej Giertych, has opposed the teaching of evolution and has claimed that dinosaurs and humans
    co-existed.[121]
Creationism                                                                                                                        396
    United States
    According to a 2001 Gallup poll,[122] about 45% of North
    Americans believe that "God created human beings pretty
    much in their present form at one time within the last
    10,000 years or so." Another 37% believe that "human
    beings have developed over millions of years from less
    advanced forms of life, but God guided this process",[123]
    and 14% believe that "human beings have developed over
    millions of years from less advanced forms of life, but God
    had no part in this process".[122]
    A 2000 poll for People for the American Way found 70% of the United States public felt that evolution was
    compatible with a belief in God.[128]
    According to a study published in Science, between 1985 and 2005 the number of adult North Americans who accept
    evolution declined from 45% to 40%, the number of adults who reject evolution declined from 48% to 39% and the
    number of people who were unsure increased from 7% to 21%. Besides the United States the study also compared
    data from 32 European countries, Turkey, and Japan. The only country where acceptance of evolution was lower
    than in the United States was Turkey (25%).[57]
Education controversies
    People for the American Way polled 1500 North Americans about the teaching of evolution and creationism in
    November and December 1999. They found that most North Americans were not familiar with Creationism, and
    most North Americans had heard of evolution, but many did not fully understand the basics of the theory. The main
    findings were:
Creationism                                                                                                                        397
                                                                                   [128]
                                                         Americans believe that:
Only evolution should be taught in science classes, religious explanations can be discussed in another class 17%
Creationism can be discussed in science class as a 'belief,' not a scientific theory 29%
Creationism and evolution should be taught as 'scientific theories' in science class 13%
No opinion 1%
    In such political contexts, creationists argue that their particular religiously based origin belief is superior to those of
    other belief systems, in particular those made through secular or scientific rationale. Political creationists are
    opposed by many individuals and organizations who have made detailed critiques and given testimony in various
    court cases that the alternatives to scientific reasoning offered by creationists are opposed by the consensus of the
    scientific community.[129] [130]
    Christian criticism
    Many Christians disagree with the teaching of creationism. Several religious organizations, among them the Catholic
    Church, hold that their faith is not in conflict with the scientific consensus regarding evolution.[131] The Clergy
    Letter Project, which has collected more than 13,000 signatures, is an "endeavor designed to demonstrate that
    religion and science can be compatible."
    In the article "Intelligent Design as a Theological Problem", George Murphy argues against the view that life on
    Earth, in all its forms, is direct evidence of God's act of creation (Murphy quotes Phillip Johnson's claim that he is
    speaking "of a God who acted openly and left his fingerprints on all the evidence."). Murphy argues that this view of
    God is incompatible with the Christian understanding of God as "the one revealed in the cross and resurrection of
    Jesus." The basis of this theology is Isaiah 45:15, "Truly, thou art a God who hidest thyself, O God of Israel, the
    Savior."
    Murphy observes that the execution of a Jewish carpenter by Roman authorities is in and of itself an ordinary event
    and did not require Divine action. On the contrary, for the crucifixion to occur, God had to limit or "empty" Himself.
    It was for this reason that Paul wrote, in Philippians 2:5-8,
          Have this mind among yourselves, which is yours in Christ Jesus, who, though he was in the form of God, did
          not count equality with God a thing to be grasped, but emptied himself, taking the form of a servant, being
          born in the likeness of men. And being found in human form he humbled himself and became obedient unto
          death, even death on a cross.
    Murphy concludes that,
          Just as the son of God limited himself by taking human form and dying on the cross, God limits divine
          action in the world to be in accord with rational laws God has chosen. This enables us to understand the
          world on its own terms, but it also means that natural processes hide God from scientific observation.
    For Murphy, a theology of the cross requires that Christians accept a methodological naturalism, meaning that one
    cannot invoke God to explain natural phenomena, while recognizing that such acceptance does not require one to
    accept a metaphysical naturalism, which proposes that nature is all that there is.[132]
    Other Christians have expressed qualms about teaching creationism. In March 2006, Archbishop of Canterbury
    Rowan Williams, the leader of the world's Anglicans, stated his discomfort about teaching creationism, saying that
    creationism was "a kind of category mistake, as if the Bible were a theory like other theories." He also said: "My
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       worry is creationism can end up reducing the doctrine of creation rather than enhancing it." The views of the
       Episcopal Church, the American branch of the Anglican Communion, on teaching creationism are also the same as
       Williams.[133]
       In April 2010, the American Academy of Religion issued Guidelines for Teaching About Religion in K‐12 Public
       Schools in the United States which included guidance that creation science or intelligent design should not be taught
       in science classes, as "Creation science and intelligent design represent worldviews that fall outside of the realm of
       science that is defined as (and limited to) a method of inquiry based on gathering observable and measurable
       evidence subject to specific principles of reasoning." However, they, as well as other "worldviews that focus on
       speculation regarding the origins of life represent another important and relevant form of human inquiry that is
       appropriately studied in literature or social sciences courses. Such study, however, must include a diversity of
       worldviews representing a variety of religious and philosophical perspectives and must avoid privileging one view as
       more legitimate than others."[134]
       Scientific criticism
       Science is a system of knowledge based on observation, empirical evidence and testable explanations of natural
       phenomena. By contrast, creationism is based on literal interpretations of the narratives of particular religious texts.
       Some creationist beliefs involve purported forces that lie outside of nature, such as supernatural intervention, and
       these cannot be confirmed or disproved by scientists.[135] However, many creationist beliefs can be framed as
       testable predictions about phenomena such as the age of the Earth, its geological history and the origins, distributions
       and relationships of living organisms found on it. Early science incorporated elements of these beliefs, but as science
       developed these beliefs were gradually falsified and were replaced with understandings based on accumulated and
       reproducible evidence.[136] [137] Some scientists, such as Stephen Jay Gould,[138] consider science and religion to be
       two compatible and complementary fields, with authorities in distinct areas of human experience, so-called
       non-overlapping magisteria.[139] This view is also held by many theologians, who believe that ultimate origins and
       meaning are addressed by religion, but favour verifiable scientific explanations of natural phenomena over those of
       creationist beliefs. Other scientists, such as Richard Dawkins,[140] reject the non-overlapping magisteria and argue
       that, in disproving literal interpretations of creationists, the scientific method also undermines religious texts as a
       source of truth. Irrespective of this diversity in viewpoints, since creationist beliefs are not supported by empirical
       evidence, the scientific consensus is that any attempt to teach creationism as science should be rejected.[141] [142]
       [143]
Organizations
                                                                                          Intelligent design
   Young Earth Creationism
                                                                                          •   Access Research Network
   •     Answers in Genesis, a group promoting Young-Earth Creationism
                                                                                          •   Center for Science and Culture
   •     Creation Ministries International, an organisation promoting biblical creation
   •     Institute for Creation Research, "a Christ-Focused Creation Ministry"            Evolution
   •     Creation Research Society                                                        •   TalkOrigins Archive
   Old Earth Creationism                                                                  •   National Center for Science Education
    See also
    •   Abiogenesis
    •   Biogenesis
    •   Biblical inerrancy
    •   Cosmological argument
    •   Flying Spaghetti Monster
    •   Teleological argument
    •   Watchmaker analogy
    Notes on terminology
    [1] Eugenie C. Scott (with forward by Niles Eldredge) (2004). Evolution vs. Creationism: An Introduction (http:/ / books. google. com/
        ?id=03b_a0monNYC& printsec=frontcover& dq=evolution+ vs. + creationism& q). Berkley & Los Angeles, California: University of
        California Press. p. 114. ISBN 0-520-24650-0. . Retrieved 16 June 2010 Also: Westport, Connecticut: Greenwood Press. ISBN 0313321221
    [2] "NCSE : National Center for Science Education - Defending the Teaching of Evolution in Public Schools." (http:/ / ncse. com/ creationism).
        Creationism. 2008. . Retrieved 2009-06-22.
    [3] Ronald L. Numbers. "The ‘Ordinary’ View of Creation" (http:/ / www. counterbalance. net/ history/ ordcreat-frame. html). Counterbalance
        Meta-Library. . Retrieved 2010-08-11.
    [4] Ronald L. Numbers. "Antievolutionists and Creationists" (http:/ / www. counterbalance. net/ history/ anticreat-frame. html). Creationism
        History. Counterbalance Meta-Library. . Retrieved 2007-08-15.
    [5] For example, the Scopes Trial of 1925 brought creationism and evolution into the adversarial environment of the American justice system.
        The trial was well-publicized, and served as a catalyst for the wider creation–evolution controversy; Giberson & Yerxa (2002), pp. 3-4.
    [6] Evolution's status as a "theory" has played a prominent role in the creation–evolution controversy. In scientific terminology, "theories are
        structures of ideas that explain and interpret facts". It is understood, therefore, that "evolution is a fact and a theory". In contrast, when strict
        creationists refer to evolution as a theory, they often mean to characterize evolution as an "imperfect fact", drawing upon the vernacular
        conception of "theory" as "part of a hierarchy of confidence running downhill from fact to theory to hypothesis to guess"; Gould SJ (May
        1981). Evolution as fact and theory (http:/ / www. stephenjaygould. org/ library/ gould_fact-and-theory. html). Retrieved 12 April 2010;
        Moran L (2002). Evolution is a fact and a theory (http:/ / www. talkorigins. org/ faqs/ evolution-fact. html). Retrieved 12 April 2010. Original
        work published 1993.
    [7] Campbell D (2006, 21 February). "Academics fight rise of creationism at universities" (http:/ / www. guardian. co. uk/ world/ 2006/ feb/ 21/
        religion. highereducation). The Guardian. Retrieved 07 April, 2010.
    [8] For the biological understanding of complexity, see Evolution of complexity. For a creationist perspective, see Irreducible complexity.
    [9] Ronald L. Numbers. "Creationism History: Topic Index" (http:/ / www. counterbalance. net/ history/ intro-frame. html). Counterbalance
        Meta-Library. . Retrieved 2009-06-22.
    [10] While the term myth is often used colloquially to refer to "a false story", this article uses the term in the academic meaning of "a sacred
        narrative explaining how the world and mankind came to be in their present form" (Dundes A, 1996. "Madness in method plus a plea for
        projective inversion in myth". In LL Patton & W Doniger (Eds.), Myth & method (http:/ / books. google. com/ books?id=OgsTmeRHpeUC&
        printsec=frontcover& source=gbs_navlinks_s#v=onepage& q& f=false). Charlottesville: University Press of Virginia [pp. 147-162], p. 147).
    [11] Dundes, Alan (Winter, 1997). "Binary Opposition in Myth: The Propp/Levi-Strauss Debate in Retrospect". Western Folklore (56): 39–50.
    [12] Dundes, Alan (1984). Introduction. Sacred Narrative: Readings in the Theory of Myth. Ed. Alan Dunes.. University of California Press.
    [13] Dundes, Alan (1996). "Madness in Method Plus a Plea for Projective Inversion in Myth". Myth and Method. Ed. Laurie Patton and Wendy
        Doniger.. Charlottesville: University of Virginia Press.
    [14] See, e.g., Corey MA (1993). "Making sense of the 'coincidences'". In MA Corey, God and the new cosmology: The anthropic design
        argument (http:/ / books. google. com/ books?id=M8wYPYrKnHgC& printsec=frontcover#v=onepage& q& f=false) (pp. 157-174). Lanham,
        MD: Rowman & Littlefield.
    [15] Isaak, Mark (2004). "CA230: Interpretation and observation" (http:/ / www. talkorigins. org/ indexcc/ CA/ CA230. html). Index to
        Creationist Claims. TalkOrigins Archive. . Retrieved 2009–08-20.
    [16] Isaak, Mark (2005). "CA215: Practical uses of evolution." (http:/ / www. talkorigins. org/ indexcc/ CA/ CA215. html). Index to Creationist
        Claims. TalkOrigins Archive. . Retrieved 2009–08-20.
        Isaak, Mark (2005). "CH100.1: Science in light of Scripture" (http:/ / www. talkorigins. org/ indexcc/ CH/ CH100_1. html). Index to
        Creationist Claims. TalkOrigins Archive. . Retrieved 2009–08-20.
    [17] Isaak, Mark (2004). "CA301: Science and naturalism" (http:/ / www. talkorigins. org/ indexcc/ CA/ CA301. html). Index to Creationist
        Claims. TalkOrigins Archive. . Retrieved 2009–08-20.
    [18] "Statements from Scientific and Scholarly Organizations" (http:/ / ncse. com/ media/ voices/ science). National Center for Science
        Education. . Retrieved 2008-08-28.
    [19] Royal Society statement on evolution, creationism and intelligent design (http:/ / www. royalsoc. ac. uk/ news. asp?year=& id=4298)
Creationism                                                                                                                                               400
    [20] National Association of Biology Teachers Statement on Teaching Evolution (http:/ / www. nabt. org/ sub/ position_statements/ evolution.
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    [21] IAP Statement on the Teaching of Evolution (http:/ / www. interacademies. net/ Object. File/ Master/ 6/ 150/ Evolution statement. pdf) Joint
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    [22] From the American Association for the Advancement of Science, the world's largest general scientific society: 2006 Statement on the
        Teaching of Evolution (http:/ / www. aaas. org/ news/ releases/ 2006/ pdf/ 0219boardstatement. pdf)PDF (44.8 KB), AAAS Denounces
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    [24] Creationism/ID, A Short Legal History (http:/ / www. talkreason. org/ articles/ HistoryID. cfm) By Lenny Flank, Talk Reason
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    [27] Davis A. Young (1988). "The contemporary relevance of Augustine" (http:/ / www. asa3. org/ ASA/ PSCF/ 1988/ PSCF3-88Young. html).
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        2007-06-30.
    [30] Desmond, Adrian; Moore, James (1991). Darwin. London: Michael Joseph, Penguin Group. ISBN 0-7181-3430-3.
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        "Letter 4196 — Darwin, C. R. to Gray, Asa, 31 May (1863)" (http:/ / www. darwinproject. ac. uk/ entry-4196). Darwin Correspondence
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    [32] "Letter 4041 — Lyell, Charles to Darwin, C. R., 15 March 1863" (http:/ / www. darwinproject. ac. uk/ entry-4041). Darwin Correspondence
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    [33] Bowler 2003, p. 139
    [34] Darwin and design: historical essay (http:/ / www. darwinproject. ac. uk/ content/ view/ 110/ 104/ ). Darwin Correspondence Project. 2007.
        . Retrieved 2008-09-17.
    [35] "Darwin Correspondence Project - Letter 2534 — Kingsley, Charles to Darwin, C. R., 18 November 1859" (http:/ / www. darwinproject. ac.
        uk/ darwinletters/ calendar/ entry-2534. html). . Retrieved 2009-04-11.
    [36] Quammen 2006, p. 119
    [37] Moore 2006
    [38] Barlow 1963, p.  207 (http:/ / darwin-online. org. uk/ content/ frameset?viewtype=text& itemID=F1577& pageseq=9).
    [39] Dewey 1994, p. 27
    [40] Miles 2001
    [41] Gray, Asa (1860). "Natural Selection is not inconsistent with Natural Theology" (http:/ / www. darwinproject. ac. uk/ content/ view/ 84/ 69/
        ). Atlantic Monthly (Darwin Correspondence Project - Essay: Natural selection & natural theology). . Retrieved 2009-04-11.
    [42] Bowler 2003, pp. 202–208
    [43] Evolution Vs. Creationism, Eugenie Scott, Niles Eldredge, p62-63
    [44] Albrecht Moritz (October 31, 2006). "The Origin of Life" (http:/ / www. talkorigins. org/ faqs/ abioprob/ originoflife. html#intro).
        TalkOrigins Archive. . Retrieved 2008-11-22.
    [45] Science, Religion, and Evolution (http:/ / ncse. com/ evolution/ education/ science-religion-evolution) by Eugenie Scott (accessed at
        2007-07-09).
    [46] Akin, Jimmy (January 2004). "Evolution and the Magisterium" (http:/ / www. catholic. com/ thisrock/ 2004/ 0401bt. asp). This Rock. .
        Retrieved 2007-08-15.
    [47] Jeff Severns Guntzel (2005). "National Catholic Reporter: Catholic schools steer clear of anti-evolution bias" (http:/ / www. findarticles.
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        Catholic Online (http:/ / www. catholic. org/ national/ national_story. php?id=18504)
    [49] The Tower of Babel (http:/ / www. amazon. com/ gp/ product/ product-description/ 026216180X) by Robert T. Pennock, Naturalism is an
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Creationism                                                                                                                                                401
        Paul R. Draper, Philosophy Now: The Alleged Fallacies of Evolutionary Theory (http:/ / www. philosophynow. org/ issue46/ 46pigliucci.
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    [50] Butterflies and wheels article (http:/ / www. butterfliesandwheels. com/ articleprint. php?num=158) by Raymond D. Bradley, Emeritus
        Professor of Philosophy at the Simon Fraser University (New Zealand).
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    [52] Understanding the Intelligent Design Creationist Movement: Its True Nature and Goals. (http:/ / www. centerforinquiry. net/ uploads/
        attachments/ Forrest_Paper. pdf)PDF (413 KB) A Position Paper from the Center for Inquiry, Office of Public Policy Barbara Forrest. May,
        2007.
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        Creationism by Lenny Flank.
    [54] McLean v. Arkansas Board of Education (http:/ / www. talkorigins. org/ faqs/ mclean-v-arkansas. html), Decision January 5, 1982.
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        12/ post_6. html), Discovery Institute, Posted by Jonathan Witt on December 20, 2005 4:43 PM. Retrieved 2007-07-01
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    [69] See also the article Evolution and the Roman Catholic Church.
    [70] see eg John Polkinghorne's Science and Theology pp6-7
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    [115] In the beginning: The debate over creation and evolution, once most conspicuous in America, is fast going global (http:/ / www.
       economist. com/ world/ displaystory. cfm?story_id=9036706), ISTANBUL, MOSCOW AND ROME, Evolution and religion, The Economist,
       April 19th 2007.
    [116] The dangers of creationism in education (http:/ / assembly. coe. int/ main. asp?Link=/ documents/ workingdocs/ doc07/ edoc11297. htm),
       Committee on Culture, Science and Education, Rapporteur: Mr Guy LENGAGNE, France, Socialist Group, Doc. 11297, Parliamentary
       Assemble Council of Europe, June 8, 2007.
    [117] The dangers of creationism in education - Resolution 1580 (http:/ / assembly. coe. int/ Main. asp?link=/ Documents/ AdoptedText/ ta07/
       ERES1580. htm), Committee on Culture, Science and Education, Rapporteur: Mr Guy LENGAGNE, France, Socialist Group, Doc. 11297,
       Parliamentary Assemble Council of Europe, October 4, 2007.
    [118] "Darwin is off the curriculum for Serbian schools" (http:/ / www. telegraph. co. uk/ news/ 1471367/
       Darwin-is-off-the-curriculum-for-Serbian-schools. html), telegraph.co.uk, 9 September 2004
    [119] "Serbia reverses Darwin suspension" (http:/ / news. bbc. co. uk/ 2/ hi/ europe/ 3642460. stm), BBC News, 9 September 2004
    [120] "'Anti-Darwin' Serb minister quits" (http:/ / news. bbc. co. uk/ 2/ hi/ europe/ 3663196. stm), BBC News, 16 September 2004
    [121] " And finally... (http:/ / www. wbj. pl/ ?command=article& id=35336& type=wbj)", Warsaw Business Journal, 18 December 2006
    [122] Majority of Americans Doubt Theory of Evolution (http:/ / www. gallup. com/ poll/ 14107/
       Third-Americans-Say-Evidence-Has-Supported-Darwins-Evolution-Theory. aspx)
    [123] Substantial Numbers of Americans Continue to Doubt Evolution as Explanation for Origin of Humans (http:/ / www. unl. edu/ rhames/
       courses/ current/ creation/ evol-poll. htm)
    [124] Frank Newport, "Evolution Beliefs." (http:/ / www. gallup. com/ video/ 27838/ Evolution-Beliefs. aspx) Gallup Organization, June 11,
       2007.
    [125] "Public beliefs about evolution and creation." (http:/ / www. religioustolerance. org/ ev_publi. htm) From: religioustolerance.org. Retrieved
       on November 11, 2007.
    [126] "Keeping God Out of the Classroom". Newsweek. June 29, 1987. p. 23.
    [127] US poll results - "Public beliefs about evolution and creation", religioustolerance.org (http:/ / www. religioustolerance. org/ ev_publi. htm)
    [128] Evolution and Creationism In Public Education: An In-depth Reading Of Public Opinion (http:/ / media. pfaw. org/ pdf/ creationism/
       creationism-poll. pdf)PDF (481 KB)
    [129] "Statement on the Teaching of Evolution" (http:/ / www. aaas. org/ news/ releases/ 2006/ pdf/ 0219boardstatement. pdf) (PDF). American
       Association for the Advancement of Science. 2006. . Retrieved 2007-03-20.
    [130] "99.9 percent of scientists accept evolution" Finding the Evolution in Medicine (http:/ / www. nih. gov/ nihrecord/ 07_28_2006/ story03.
       htm) National Institutes of Health
    [131] National Center for Science Education: Statements from Religious Organizations (http:/ / ncse. com/ media/ voices/ religion)
    [132] Murphy, George L., 2002, "Intelligent Design as a Theological Problem," in Covalence: the Bulletin of the Evangelical Lutheran Church in
       America Alliance for Faith, Science, and Technology
    [133] The Guardian, Archbishop: Stop teaching creationism, Williams backs science over Bible (http:/ / www. guardian. co. uk/ religion/ Story/
       0,,1735730,00. html) See transcript of Guardian interview for primary source
    [134] "American Academy of Religion on teaching creationism" (http:/ / ncse. com/ news/ 2010/ 07/
       american-academy-religion-teaching-creationism-005712). National Center for Science Education. July 23, 2010. . Retrieved 2010-08-09.
    [135] Committee on Revising Science and Creationism: A View from the National Academy of Sciences, National Academy of Sciences and
       Institute of Medicine of the National Academies (2008). Science, Evolution, and Creationism (http:/ / www. nap. edu/ catalog/ 11876. html)
       (free pdf download ed.). Washington, D.C.: National Academies Press. pp. 10–12. ISBN 0-309-10586-2. . Retrieved 2008-10-27. "In science,
       explanations must be based on naturally occurring phenomena. Natural causes are, in principle, reproducible and therefore can be checked
       independently by others. If explanations are based on purported forces that are outside of nature, scientists have no way of either confirming or
       disproving those explanations."
    [136] "An Index to Creationist Claims" (http:/ / www. talkorigins. org/ indexcc/ index. html). . Retrieved 2008-08-12.
    [137] Futuyma, Douglas J.. "Evolutionary Science, Creationism, and Society" (http:/ / www. biologi. kva. se/ arkiv/ FutuymaCh22final. pdf)
       (PDF). "Evolution" (2005). . Retrieved 2008-08-12.
    [138] Gould, S. J. (2002). Rocks of Ages: Science and Religion in the Fullness of Life. New York: Ballantine Books.
    [139] Gould, Stephen Jay (1997). "Nonoverlapping Magisteria" (http:/ / www. stephenjaygould. org/ library/ gould_noma. html). Natural History
       106 (3): 16–22. .
    [140] Dawkins, Richard (2006). The God Delusion. Transworld Publishers. p. 5. ISBN 0-5930-5548-9.
Creationism                                                                                                                                        404
    [141] "Royal Society statement on evolution, creationism and intelligent design" (http:/ / www. royalsoc. ac. uk/ news. asp?year=& id=4298).
       The Royal Society. 2006-04-11. . Retrieved 2007-04-23.
    [142] Matsumura, Molleen; Mead, Louise (2007-07-31). "10 Significant Court Decisions Regarding Evolution/Creationism" (http:/ / ncse. com/
       taking-action/ ten-major-court-cases-evolution-creationism). National Center for Science Education. . Retrieved 2008-11-04.
    [143] Myers, PZ (2006-02-15). "Ann Coulter: No Evidence for Evolution?" (http:/ / scienceblogs. com/ pharyngula/ 2006/ 06/
       ann_coulter_no_evidence_for_ev. php). Pharyngula (ScienceBlogs). . Retrieved 2007-09-12.
    [144] Answers In Creation (http:/ / www. answersincreation. org)
Notes
    References
    • "Darwin's Ornithological Notes" (http://darwin-online.org.uk/content/frameset?viewtype=text&
      itemID=F1577&pageseq=1). Bulletin of the British Museum (Natural History) Historical Series 2 (No. 7):
      pp. 201–278. 1963. Retrieved 2009-06-10.
    • Bowler, Peter J. (2003). Evolution: The History of an Idea (3rd ed.). University of California Press.
      ISBN 0-520-23693-9.
    • Darwin, Charles (1958). Barlow, Nora. ed. [[The Autobiography of Charles Darwin (http://darwin-online.org.
      uk/EditorialIntroductions/Freeman_LifeandLettersandAutobiography.html)] 1809–1882. With the Original
      Omissions Restored. Edited and with Appendix and Notes by his Granddaughter Nora Barlow]. London: Collins.
      Retrieved 2009-01-09.
    • Desmond, Adrian (1989). The Politics of Evolution: Morphology, Medicine, and Reform in Radical London.
      Chicago: University of Chicago Press. ISBN 0-226-14374-0.
    • Desmond, Adrian; Moore, James (1991). Darwin. London: Michael Joseph, Penguin Group.
      ISBN 0-7181-3430-3.
    • Dewey, John (1994). "The Influence of Darwinism on Philosophy". In Martin Gardner. Great Essays in Science.
      Prometheus Books. ISBN 0-87975-853-8.
    • Forster, Roger; Marston, Dr Paul (1999). "Genesis Through History" (http://www.ivycottage.org/group/group.
      aspx?id=6826). Reason Science and Faith (Ivy Cottage: E-Books ed.). Chester, England: Monarch Books.
      ISBN 1-85424-441-8. Retrieved 2009-03-24.
    • Hayward, James L. (1998). The Creation/Evolution Controversy: an annotated bibliography. Scarecrow
      Press/Salem Press. pp. 253. ISBN 0-8108-3386-7.
    • Miles, Sara Joan (2001). "Charles Darwin and Asa Gray Discuss Teleology and Design" (http://www.asa3.org/
      ASA/PSCF/2001/PSCF9-01Miles.html). Perspectives on Science and Christian Faith 53: pp. 196–201.
      Retrieved 2008-11-22.
    • Moore, James (2006). Evolution and Wonder - Understanding Charles Darwin (http://speakingoffaith.
      publicradio.org/programs/darwin/transcript.shtml). Speaking of Faith (Radio Program). American Public
      Media. Retrieved 2008-11-22.
    • Quammen, David (2006). The Reluctant Mr. Darwin. New York: Atlas Books. ISBN 0-393-05981-2.
    • Secord, James A. (2000). Victorian Sensation: The Extraordinary Publication, Reception, and Secret Authorship
      of Vestiges of the Natural History of Creation. Chicago: University of Chicago Press. ISBN 0-226-74411-6.
Creationism                                                                                                         405
    Further reading
    • Adams Leeming, David (1996). A Dictionary of Creation Myths. OUP. ISBN 978-0195102758.
    • Anderson, Bernhard W. (editor) Creation in the Old Testament (ISBN 0-8006-1768-1)
    • Anderson, Bernhard W. Creation Versus Chaos: The Reinterpretation of Mythical Symbolism in the Bible (ISBN
      1-59752-042-X)
    • Ian Barbour When Science Meets Religion, 2000, Harper SanFrancisco
    • Ian Barbour Religion and Science: Historical and Contemporary Issues, 1997, Harper SanFrancisco.
    • Stephen Jay Gould Rocks of Ages: Science and Religion in the fullness of life, Ballantine Books, 1999
    • Aryeh Kaplan, Immortality, Resurrection, and the Age of the Universe: A Kabbalistic View, Ktav, NJ, in
      association with the Association of Orthodox Jewish Scientists, NY, 1993
    • Stuart Kauffman Reinventing the Sacred, 2008
    • Numbers, Ronald (November 30, 2006). The Creationists: From Scientific Creationism to Intelligent Design,
      Expanded Edition. Harvard University Press. ISBN 0674023390.
    • Joel R. Primack and Nancy Ellen Abrams In a Beginning...: Quantum Cosmology and Kabbalah, Tikkun, Vol. 10,
      No. 1, pp. 66–73
    External links
    • The Edinburgh Creation Group (http://edinburghcreationgroup.org/) This site features many videos bringing a
      Creationist perspective.
    • Creationism (Stanford Encyclopedia of Philosophy) (http://plato.stanford.edu/entries/creationism/) by
      Michael Ruse
    • HowStuffWorks: How creationism works (http://www.howstuffworks.com/creationism.htm)
    • Harun Yahya (http://www.harunyahya.com), Muslim creationist web site
    • Darwinism Refuted (http://www.darwinismrefuted.com) based on Harun Yahya's writings
    • Can Creation and Evolution Both Be True? | epologetics (http://epologetics.org/creationevolutionboth.php)
      Examines whether Biblical creation and neo-darwinistic evolution can be reconciled.
    • Evolution, Creationism & ID Timeline (http://www.allviewpoints.org/RESOURCES/EVOLUTION/timeline.
      htm) Focuses on major historical and recent events in the scientific and political debate
    • Evolution and Creationism (http://images.derstandard.at/20051012/Evolution-and-Creationism.
      pdf)PDF (204 KB). A Guide for Museum Docents
    • What is creationism? (http://www.talkorigins.org/faqs/wic.html) from talk.origins
    • The Creation/Evolution Continuum (http://ncse.com/creationism/general/creationevolution-continuum) by
      Eugenie Scott.
    • Armies of the Night (http://www.stephenjaygould.org/ctrl/azimov_creationism.html) by Isaac Asimov.
    • Workers have stake in defending science (http://www.themilitant.com/2005/6935/693551.html) a materialist
      statement on creationism by The Militant, 2005.
    • Edward J. Larson and Larry Witham Leading scientists still reject God in Nature, Vol. 394, No. 6691 (1998),
      p. 313. Online at Freethought-web.org (http://www.freethought-web.org/ctrl/news/file002.html)
    • Creationism: The Hindu View (http://www.talkorigins.org/faqs/mom/groves.html) from talk.origins
    • 15 Answers to Creationist Nonsense (http://www.sciam.com/article.cfm?id=15-answers-to-creationist) from
      Scientific American
Intelligent design                                                                                                                 406
     Intelligent design
           For the philosophical "argument from design", see Teleological argument.
     Intelligent design is the proposition that "certain features of the universe and of living things are best explained by
     an intelligent cause, not an undirected process such as natural selection."[1] [2] It is a form of creationism and a
     contemporary adaptation of the traditional teleological argument for the existence of God, but one which deliberately
     avoids specifying the nature or identity of the designer.[3] Its leading proponents—all of whom are associated with
     the Discovery Institute, a politically conservative think tank[4] [5] —believe the designer to be the God of
     Christianity.[6] [7]
     Intelligent design was developed by a group of American creationists who revised their argument in the
     creation–evolution controversy to circumvent court rulings that prohibit the teaching of creationism as science.[8] [9]
     [10]
          Proponents argue that intelligent design is a scientific theory.[1] In so doing, they seek to fundamentally redefine
     science to include supernatural explanations.[11] The overwhelming consensus in the scientific community is that
     intelligent design is not science,[12] [13] [14] [15] and indeed is pseudoscience.[16] [17] [18]
     Intelligent design originated in response to the United States Supreme Court Edwards v. Aguillard ruling, which
     barred the teaching of "creation science" in public schools as breaching the separation of church and state.[8] The
     first significant published use of intelligent design was in Of Pandas and People, a 1989 textbook intended for
     high-school biology classes.[19] From the mid-1990s, intelligent design proponents were supported by the Discovery
     Institute which, together with its Center for Science and Culture, planned and funded the "intelligent design
     movement".[20] [4] They advocated inclusion of intelligent design in public school curricula, leading to the 2005
     Kitzmiller v. Dover Area School District trial, where U.S. District Judge John E. Jones III ruled that intelligent
     design is not science, that it "cannot uncouple itself from its creationist, and thus religious, antecedents", and that the
     school district's promotion of it therefore violated the Establishment Clause of the First Amendment to the U.S.
     Constitution.[21]
Intelligent design                                                                                                                   407
History
     Intelligent design in the late 20th and early 21st century is a development of natural theology that seeks to change the
     basis of science and undermine evolutionary theory.[30] As evolutionary theory expanded to explain more
     phenomena, the examples held up as evidence of design changed, though the essential argument remains the same:
     complex systems imply a designer. Past examples have included the eye and the feathered wing; current examples
     are typically biochemical: protein functions, blood clotting, and bacterial flagella; see irreducible complexity.
     Philosopher Barbara Forrest writes that the intelligent design movement began in 1984 with the publication by Jon
     A. Buell's the Foundation for Thought and Ethics of The Mystery of Life's Origin by Charles B. Thaxton, a chemist
     and creationist. Thaxton held a conference in 1988, "Sources of Information Content in DNA," which attracted
     creationists such as Stephen C. Meyer. Forrest writes that, in December 1988, Thaxton decided to use the term
     "intelligent design," instead of creationism, for the movement.[31]
     In March 1986 a review by Meyer used information theory to suggest that messages transmitted by DNA in the cell
     show "specified complexity" specified by intelligence, and must have originated with an intelligent agent.[32] In
     November of that year Thaxton described his reasoning as a more sophisticated form of Paley's argument from
     design.[33] At the Sources of Information Content in DNA conference in 1988 he said that his intelligent cause view
     was compatible with both metaphysical naturalism and supernaturalism,[34]
     Intelligent design avoids identifying or naming the agent of creation—it merely states that one (or more) must
     exist—but leaders of the movement have said the designer is the Christian God.[6] [7] [35] [36] [37] Whether this lack of
Intelligent design                                                                                                                    408
     specificity about the designer's identity in public discussions is a genuine feature of the concept, or just a posture
     taken to avoid alienating those who would separate religion from the teaching of science, has been a matter of great
     debate between supporters and critics of intelligent design. The Kitzmiller v. Dover Area School District court ruling
     held the latter to be the case.
     Of Pandas and People was published in 1989, and was the first book to make frequent use of the phrases "intelligent
     design," "design proponents," and "design theory", thus representing the beginning of the modern "intelligent
     design" movement.[51] "Intelligent design” was the most prominent of around fifteen new terms it introduced as a
     new lexicon of creationist terminology to oppose evolution without using religious language.[52] It was the first place
     where the phrase "intelligent design" appeared in its present use, as stated both by its publisher Jon Buell,[53] [54] and
     by William A. Dembski in his expert witness report.[55] The book presented all of the basic arguments of intelligent
     design proponents before any research had been done to support these arguments, and was actively promoted by
     creationists for public school use.[51] Rethinking Schools magazine has criticized the book, saying it was a
     "creationist treatise" packaged to look like a high quality science textbook, with a "glossy cover, full-color
     illustrations, and chapter titles such as 'Homology' and 'Genetics and Macroevolution'", with numerous
     "professionally prepared charts and illustrations appear to show how concrete scientific evidence supports the
     existence of the unnamed 'designer'". Philosopher of science Michael Ruse believes the contents were "worthless and
     dishonest", and it was described by an ACLU lawyer as a political tool aimed at students who did not "know science
     or understand the controversy over evolution and creationism".[38]
Intelligent design                                                                                                                410
Integral concepts
     Irreducible complexity
     The term "irreducible complexity" was introduced by biochemist
     Michael Behe in his 1996 book Darwin's Black Box, though he had
     already described the concept in his contributions to the 1993 revised
     edition of Of Pandas and People.[51] Behe defines it as "a single
     system which is composed of several well-matched interacting parts
     that contribute to the basic function, wherein the removal of any one of
     the parts causes the system to effectively cease functioning".[56]
     Critics point out that the irreducible complexity argument assumes that the necessary parts of a system have always
     been necessary and therefore could not have been added sequentially.[59] [60] They argue that something which is at
     first merely advantageous can later become necessary as other components change. Furthermore, they argue,
     evolution often proceeds by altering preexisting parts or by removing them from a system, rather than by adding
     them. This is sometimes called the "scaffolding objection" by an analogy with scaffolding, which can support an
     "irreducibly complex" building until it is complete and able to stand on its own.[61] Behe has acknowledged using
     "sloppy prose", and that his "argument against Darwinism does not add up to a logical proof".[62] Irreducible
     complexity has remained a popular argument among advocates of intelligent design; in the Dover trial, the court held
     that "Professor Behe's claim for irreducible complexity has been refuted in peer-reviewed research papers and has
     been rejected by the scientific community at large".[63]
     Specified complexity
     In 1986 the creationist chemist Charles Thaxton used the term "specified complexity" from information theory when
     claiming that messages transmitted by DNA in the cell were specified by intelligence, and must have originated with
     an intelligent agent.[32] The intelligent design concept of "specified complexity" was developed in the 1990s by
     mathematician, philosopher, and theologian William Dembski. Dembski states that when something exhibits
     specified complexity (i.e., is both complex and "specified", simultaneously), one can infer that it was produced by an
     intelligent cause (i.e., that it was designed) rather than being the result of natural processes. He provides the
     following examples: "A single letter of the alphabet is specified without being complex. A long sentence of random
     letters is complex without being specified. A Shakespearean sonnet is both complex and specified".[64] He states that
     details of living things can be similarly characterized, especially the "patterns" of molecular sequences in functional
     biological molecules such as DNA.
Intelligent design                                                                                                                 411
     Richard Dawkins, another critic of intelligent design, argues in The God Delusion that allowing for an intelligent
     designer to account for unlikely complexity only postpones the problem, as such a designer would need to be at least
     as complex.[73] Other scientists have argued that evolution through selection is better able to explain the observed
     complexity, as is evident from the use of selective evolution to design certain electronic, aeronautic and automotive
     systems which are considered problems too complex for human "intelligent designers".[74]
     Fine-tuned Universe
     Intelligent design proponents have also occasionally appealed to broader teleological arguments outside of biology,
     most notably an argument based on the fine-tuning of universal constants that make matter and life possible and
     which are argued not to be solely attributable to chance. These include the values of fundamental physical constants,
     the relative strength of nuclear forces, electromagnetism, and gravity between fundamental particles, as well as the
     ratios of masses of such particles. Intelligent design proponent and Center for Science and Culture fellow Guillermo
     Gonzalez argues that if any of these values were even slightly different, the universe would be dramatically different,
     making it impossible for many chemical elements and features of the Universe, such as galaxies, to form.[75] Thus,
     proponents argue, an intelligent designer of life was needed to ensure that the requisite features were present to
     achieve that particular outcome.
     Scientists have generally responded that this argument cannot be tested and is therefore not science but metaphysics.
     Some scientists argue that even when taken as mere speculation, these arguments are poorly supported by existing
     evidence.[76] Victor J. Stenger and other critics say both intelligent design and the weak form of the anthropic
     principle are essentially a tautology; in his view, these arguments amount to the claim that life is able to exist
     because the Universe is able to support life.[77] [78] [79] The claim of the improbability of a life-supporting universe
     has also been criticized as an argument by lack of imagination for assuming no other forms of life are possible. Life
     as we know it might not exist if things were different, but a different sort of life might exist in its place. A number of
     critics also suggest that many of the stated variables appear to be interconnected and that calculations made by
     mathematicians and physicists suggest that the emergence of a universe similar to ours is quite probable.[80]
     Proponent Granville Sewell argues that the evolution of complex forms of life represents a decrease of entropy, and
     that it thus violates the second law of thermodynamics and so supports intelligent design.[81] This, however, is a
     misapplication of thermodynamic principles.[82] The second law applies to closed systems only. If Granville's
     argument were valid, living things could not be born and grow, as this also would be a decrease in entropy. Neither
     evolution nor the growth of living things violates the second law of thermodynamics because living things are not
     closed systems—they have external energy sources (e.g. food, oxygen, sunlight) whose production requires an
     offsetting net increase in entropy.
Intelligent design                                                                                                                          412
     Intelligent designer
     Intelligent design arguments are formulated in secular terms and intentionally avoid identifying the intelligent agent
     (or agents) they posit. Although they do not state that God is the designer, the designer is often implicitly
     hypothesized to have intervened in a way that only a god could intervene. Dembski, in The Design Inference,
     speculates that an alien culture could fulfill these requirements. The authoritative description of intelligent design,[83]
     however, explicitly states that the Universe displays features of having been designed. Acknowledging the paradox,
     Dembski concludes that "no intelligent agent who is strictly physical could have presided over the origin of the
     universe or the origin of life".[84] The leading proponents have made statements to their supporters that they believe
     the designer to be the Christian God, to the exclusion of all other religions.[6] [7] [35]
     Beyond the debate over whether intelligent design is scientific, a number of critics argue that existing evidence
     makes the design hypothesis appear unlikely, irrespective of its status in the world of science. For example, Jerry
     Coyne asks why a designer would "give us a pathway for making vitamin C, but then destroy it by disabling one of
     its enzymes" (see pseudogene) and why he or she would not "stock oceanic islands with reptiles, mammals,
     amphibians, and freshwater fish, despite the suitability of such islands for these species". Coyne also points to the
     fact that "the flora and fauna on those islands resemble that of the nearest mainland, even when the environments are
     very different" as evidence that species were not placed there by a designer.[85] Previously, in Darwin's Black Box,
     Behe had argued that we are simply incapable of understanding the designer's motives, so such questions cannot be
     answered definitively. Odd designs could, for example, "have been placed there by the designer ... for artistic
     reasons, to show off, for some as-yet undetectable practical purpose, or for some unguessable reason". Coyne
     responds that in light of the evidence, "either life resulted not from intelligent design, but from evolution; or the
     intelligent designer is a cosmic prankster who designed everything to make it look as though it had evolved".[85]
     Asserting the need for a designer of complexity also raises the question "What designed the designer?"[86] Intelligent
     design proponents say that the question is irrelevant to or outside the scope of intelligent design.[87] Richard Wein
     counters that the unanswered questions an explanation creates "must be balanced against the improvements in our
     understanding which the explanation provides. Invoking an unexplained being to explain the origin of other beings
     (ourselves) is little more than question-begging. The new question raised by the explanation is as problematic as the
     question which the explanation purports to answer".[68] Richard Dawkins sees the assertion that the designer does
     not need to be explained, not as a contribution to knowledge, but as a thought-terminating cliché.[88] [89] In the
     absence of observable, measurable evidence, the very question "What designed the designer?" leads to an infinite
     regression from which intelligent design proponents can only escape by resorting to religious creationism or logical
     contradiction.[90]
     Movement
                                                           The intelligent design movement is a direct outgrowth of the
                                                           creationism of the 1980s.[10] The scientific and academic communities,
                                                           along with a U.S. federal court, view intelligent design as either a form
                                                           of creationism or as a direct descendant that is closely intertwined with
                                                           traditional creationism;[17] [18] [92] [93] [94] [95] and several authors
                                                           explicitly refer to it as "intelligent design creationism".[10] [96] [97] [98]
      The Discovery Institute's Center for the Renewal
                                                           The movement is headquartered in the Center for Science and Culture
        of Science and Culture used banners based on
      "The Creation of Adam" from the Sistine Chapel.      (CSC), established in 1996 as the creationist wing of the Discovery
        Later it used a less religious image, then was     Institute to promote a religious agenda[99] calling for broad social,
                                                    [91]
      renamed the Center for Science and Culture.          academic and political changes. The Discovery Institute's intelligent
Intelligent design                                                                                                                 413
     design campaigns have been staged primarily in the United States, although efforts have been made in other
     countries to promote intelligent design. Leaders of the movement say intelligent design exposes the limitations of
     scientific orthodoxy and of the secular philosophy of naturalism. Intelligent design proponents allege that science
     should not be limited to naturalism and should not demand the adoption of a naturalistic philosophy that dismisses
     out-of-hand any explanation which contains a supernatural cause. The overall goal of the movement is to "defeat
     [the] materialist world view" represented by the theory of evolution in favor of "a science consonant with Christian
     and theistic convictions".[99]
     Phillip E. Johnson stated that the goal of intelligent design is to cast creationism as a scientific concept.[36] [100] All
     leading intelligent design proponents are fellows or staff of the Discovery Institute and its Center for Science and
     Culture.[101] Nearly all intelligent design concepts and the associated movement are the products of the Discovery
     Institute, which guides the movement and follows its wedge strategy while conducting its Teach the Controversy
     campaign and their other related programs.
     Leading intelligent design proponents have made conflicting statements regarding intelligent design. In statements
     directed at the general public, they say intelligent design is not religious; when addressing conservative Christian
     supporters, they state that intelligent design has its foundation in the Bible.[100] Recognizing the need for support, the
     institute affirms its Christian, evangelistic orientation: "Alongside a focus on influential opinion-makers, we also
     seek to build up a popular base of support among our natural constituency, namely, Christians. We will do this
     primarily through apologetics seminars. We intend these to encourage and equip believers with new scientific
     evidences that support the faith, as well as to 'popularize' our ideas in the broader culture."[99]
     Barbara Forrest, an expert who has written extensively on the movement, describes this as being due to the
     Discovery Institute's obfuscating its agenda as a matter of policy. She has written that the movement's "activities
     betray an aggressive, systematic agenda for promoting not only intelligent design creationism, but the religious
     world-view that undergirds it".[102]
     Barbara Forrest contends such statements reveal that leading proponents see intelligent design as essentially religious
     in nature, not merely a scientific concept that has implications with which their personal religious beliefs happen to
     coincide.[109] She writes that the leading proponents of intelligent design are closely allied with the
     ultra-conservative Christian Reconstructionism movement. She lists connections of (current and former) Discovery
     Institute Fellows Phillip Johnson, Charles Thaxton, Michael Behe, Richard Weikart, Jonathan Wells and Francis
     Beckwith to leading Christian Reconstructionist organizations, and the extent of the funding provided the Institute by
     Howard Ahmanson Jr., a leading figure in the Reconstructionist movement.[110]
     Polls
     Several surveys were conducted prior to the December 2005 decision in Kitzmiller v. Dover, which sought to
     determine the level of support for intelligent design among certain groups. According to a 2005 Harris poll, 10% of
     adults in the United States viewed human beings as "so complex that they required a powerful force or intelligent
     being to help create them".[114] Although Zogby polls commissioned by the Discovery Institute show more support,
     these polls suffer from considerable flaws, such as having a very low response rate (248 out of 16,000), being
     conducted on behalf of an organization with an expressed interest in the outcome of the poll, and containing leading
     questions.[115] [116] [117]
     A May 2005 survey of nearly 1500 physicians in the United States conducted by the Louis Finkelstein Institute and
     HCD Research showed that 63% of the physicians agreed more with evolution than with intelligent design.[118]
     A series of Gallup polls in the United States from 1982 through 2008 on "Evolution, Creationism, Intelligent
     Design" found support for "human beings have developed over millions of years from less advanced formed of life,
     but God guided the process" of between 35% and 40%, support for "God created human beings in pretty much their
     present form at one time within the last 10,000 years or so" varied from 43% to 47%, and support for "human beings
     have developed over millions of years from less advanced formed of life, but God had no part in the process" varied
     from 9% to 14%. The polls also noted answers to a series of more detailed questions.[119]
Intelligent design                                                                                                                 415
     Film
     The film Expelled: No Intelligence Allowed sparked further controversy in 2008. This documentary, hosted by Ben
     Stein, spends much time focusing on professors who have been asked to leave or have left numerous institutions
     because, the film insinuates, of their beliefs in Intelligent Design. One of the film's first screenings resulted in Paul
     "PZ" Myers, an interviewee in the film, being asked to leave the theater. There have also been allegations from some
     interviewees that interviews were recorded many times in order to get the exact phrasing required by the producer.
     The production company, Premise Media, also has helped finance some religious films such as The Passion of the
     Christ. [120] [121]
[138] [139]
     Intelligent design has not presented a credible scientific case and is an attempt to teach religion in public schools,
     substituting public support for scientific research.[140] If the argument to give "equal time for all theories" were
     actually practiced, there would be no logical limit to the number of mutually incompatible supernatural "theories"
     regarding the origins and diversity of life to be taught in the public school system, including intelligent design
     parodies such as the Flying Spaghetti Monster "theory"; intelligent design does not provide a mechanism for
     discriminating among them. Philosopher of biology Elliott Sober, for example, states that intelligent design is not
     falsifiable because "[d]efenders of ID always have a way out".[141] [142] Intelligent design proponent Michael Behe
     concedes "You can't prove intelligent design by experiment".[128]
     Intelligent design proponents cannot legitimately infer that an intelligent designer is behind the part of the process
     that is not understood scientifically, since they have not shown that anything supernatural has occurred. The
     inference that an intelligent designer created life on Earth, which advocate William Dembski has said could
     alternately be an "alien" life force,[106] has been compared to the a priori claim that aliens helped the ancient
     Egyptians build the pyramids.[143] [144] In both cases, the effect of this outside intelligence is not repeatable,
     observable or falsifiable, and it violates the principle of parsimony. From a strictly empirical standpoint, one may list
     what is known about Egyptian construction techniques, but one must admit ignorance about exactly how the
     Egyptians built the pyramids.
     Supporters of intelligent design have also reached out to other faith groups with similar accounts of creation with the
     hope that the broader coalition will have greater influence in supporting science education that does not contradict
     their religious views.[136] Many religious bodies have responded by expressing support for evolution. The Roman
     Catholic church has stated that religious faith is fully compatible with science, which is limited to dealing only with
     the natural world[145] — a position described by the term theistic evolution.[146] As well as pointing out that
     intelligent design is not science, they also reject it for various philosophical and theological reasons.[147] [148] The
     arguments of intelligent design have been directly challenged by the over 10,000 clergy who signed the Clergy
     Letter Project. Prominent scientists who strongly express religious faith, such as the astronomer George Coyne and
     the biologist Ken Miller, have been at the forefront of opposition to intelligent design. While creationist
     organizations have welcomed intelligent design's support against naturalism, they have also been critical of its
     refusal to identify the designer,[149] [150] [151] and have pointed to previous failures of the same argument.[152]
     Rabbi Natan Slifkin directly criticized the advocates of intelligent design as presenting a perspective of God that is
     dangerous to religion.[153] Those who promote it as parallel to religion, he asserts, do not truly understand it. Slifkin
     criticizes intelligent design's advocacy of teaching their perspective in biology classes, wondering why no one claims
     that God's hand should be taught in other secular classes, such as history, physics or geology. Slifkin also asserts that
     the intelligent design movement is inordinately concerned with portraying God as "in control" when it comes to
     things that cannot be easily explained by science, but not in control in respect to things which can be explained by
     scientific theory.[153] Kenneth Miller expressed a view similar to Slifkin's: "[T]he struggles of the Intelligent Design
     movement are best understood as clamorous and disappointing double failures - rejected by science because they do
     not fit the facts, and having failed religion because they think too little of God.[154]
     Defining science
     The scientific method is a body of techniques for investigating phenomena and acquiring new knowledge of the
     natural world without assuming the existence or nonexistence of the supernatural, an approach sometimes called
     methodological naturalism. Intelligent design proponents believe that this can be equated to materialist metaphysical
     naturalism, and have often said that not only is their own position scientific, but it is even more scientific than
     evolution, and that they want a redefinition of science as a revived natural theology or natural philosophy to allow
     "non-naturalistic theories such as intelligent design".[155] This presents a demarcation problem, which in the
     philosophy of science is about how and where to draw the lines around science.[156] For a theory to qualify as
Intelligent design                                                                                                                   417
     Critics also say that the intelligent design doctrine does not meet the Daubert Standard,[168] the criteria for scientific
     evidence mandated by the US Supreme Court. The Daubert Standard governs which evidence can be considered
     scientific in United States federal courts and most state courts. Its four criteria are:
     • The theoretical underpinnings of the methods must yield testable predictions by means of which the theory could
       be falsified.
     • The methods should preferably be published in a peer-reviewed journal.
     • There should be a known rate of error that can be used in evaluating the results.
     • The methods should be generally accepted within the relevant scientific community.
     In Kitzmiller v. Dover Area School District, using these criteria and others mentioned above, Judge Jones ruled that
     "... we have addressed the seminal question of whether ID is science. We have concluded that it is not, and moreover
     that ID cannot uncouple itself from its creationist, and thus religious, antecedents".
     Against this, the philosopher Thomas Nagel argues that intelligent design is very different from creation science, in
     that it does not depend on distortion of evidence, or on the assumption that it is immune to empirical evidence. It
     depends only on the idea that the hypothesis of a designer makes sense. Whatever the merits of the positions, he
     argues that it is a scientific disagreement, not a disagreement between science and something else.[169]
     The U.S. National Academy of Sciences has stated that "creationism, intelligent design, and other claims of
     supernatural intervention in the origin of life or of species are not science because they are not testable by the
     methods of science."[170] The U.S. National Science Teachers Association and the American Association for the
     Advancement of Science have termed it pseudoscience.[171] [17] [18] Others in the scientific community have
     concurred,[172] and some have called it junk science.[173] [174]
     Peer review
     The failure to follow the procedures of scientific discourse and the failure to submit work to the scientific
     community that withstands scrutiny have weighed against intelligent design being accepted as valid science.[175] The
     intelligent design movement has not published a properly peer-reviewed article in a scientific journal.[175]
     Intelligent design, by appealing to a supernatural agent, directly conflicts with the principles of science, which limit
     its inquiries to empirical, observable and ultimately testable data and which require explanations to be based on
     empirical evidence. Dembski, Behe and other intelligent design proponents say bias by the scientific community is to
     blame for the failure of their research to be published.[176] Intelligent design proponents believe that their writings
     are rejected for not conforming to purely naturalistic, non-supernatural mechanisms rather than because their
Intelligent design                                                                                                               418
     research is not up to "journal standards", and that the merit of their articles is overlooked. Some scientists describe
     this claim as a conspiracy theory.[177] Michael Shermer has rebutted the claim, noting "Anyone who thinks that
     scientists do not question Darwinism has never been to an evolutionary conference." He noted that scientists such as
     Joan Roughgarden and Lynn Margulis have challenged certain Darwinist theories and offered explanations of their
     own and despite this they "have not been persecuted, shunned, fired or even expelled. Why? Because they are doing
     science, not religion."[178] The issue that supernatural explanations do not conform to the scientific method became a
     sticking point for intelligent design proponents in the 1990s, and is addressed in the wedge strategy as an aspect of
     science that must be challenged before intelligent design can be accepted by the broader scientific community.
     Critics and advocates debate over whether intelligent design produces new research and has legitimately attempted to
     publish this research. For instance, the Templeton Foundation, a former funder of the Discovery Institute and a major
     supporter of projects seeking to reconcile science and religion, says that it asked intelligent design proponents to
     submit proposals for actual research, but none were ever submitted. Charles L. Harper Jr., foundation vice-president,
     said: "From the point of view of rigor and intellectual seriousness, the intelligent design people don't come out very
     well in our world of scientific review".[179]
     The only article published in a peer-reviewed scientific journal that made a case for intelligent design was quickly
     withdrawn by the publisher for having circumvented the journal's peer-review standards.[180] Written by the
     Discovery Institute's Center for Science & Culture Director Stephen C. Meyer, it appeared in the peer-reviewed
     journal Proceedings of the Biological Society of Washington in August 2004.[181] The article was a literature review,
     which means that it did not present any new research, but rather culled quotations and claims from other papers to
     argue that the Cambrian explosion could not have happened by natural processes. The choice of venue for this article
     was also considered problematic, because it was so outside the normal subject matter (see Sternberg peer review
     controversy[182] ). Dembski has written that "perhaps the best reason [to be skeptical of his ideas] is that intelligent
     design has yet to establish itself as a thriving scientific research program."[183] In a 2001 interview, Dembski said
     that he stopped submitting to peer-reviewed journals because of their slow time-to-print and that he makes more
     money from publishing books.[184]
     In the Dover trial, the judge found that intelligent design features no scientific research or testing.[185] There,
     intelligent design proponents cited just one paper, on simulation modeling of evolution by Behe and Snoke,[186]
     which mentioned neither irreducible complexity nor intelligent design and which Behe admitted did not rule out
     known evolutionary mechanisms.[187] Michael Lynch called the conclusions of the article "an artifact of unwarranted
     biological assumptions, inappropriate mathematical modeling, and faulty logic".[188] In sworn testimony, however,
     Behe said: "There are no peer reviewed articles by anyone advocating for intelligent design supported by pertinent
     experiments or calculations which provide detailed rigorous accounts of how intelligent design of any biological
     system occurred".[189] As summarized by the judge, Behe conceded that there are no peer-reviewed articles
     supporting his claims of intelligent design or irreducible complexity. In his ruling, the judge wrote: "A final indicator
     of how ID has failed to demonstrate scientific warrant is the complete absence of peer-reviewed publications
     supporting the theory".[175]
     The Discovery Institute insists that a number of intelligent design articles have been published in peer-reviewed
     journals,[190] including in its list the two articles mentioned above. Critics, largely members of the scientific
     community, reject this claim, stating that no established scientific journal has yet published an intelligent design
     article. Rather, intelligent design proponents have set up their own journals with peer review that lacks impartiality
     and rigor,[191] consisting entirely of intelligent design supporters.[192]
Intelligent design                                                                                                                419
     contend that the supposedly novel contributions proposed by intelligent design proponents have not served as the
     basis for any productive scientific research.
     Intelligent design has also been characterized as a "god of the gaps" argument,[199] which has the following form:
        • There is a gap in scientific knowledge.
        • The gap is filled with acts of God (or intelligent designer) and therefore proves the existence of God (or
          intelligent designer).[199]
     A god-of-the-gaps argument is the theological version of an argument from ignorance. A key feature of this type of
     argument is that it merely answers outstanding questions with explanations (often supernatural) that are unverifiable
     and ultimately themselves subject to unanswerable questions.[200]
     Kitzmiller trial
     Kitzmiller v. Dover Area School District was the first direct challenge brought in the United States federal courts
     against a public school district that required the presentation of intelligent design as an alternative to evolution. The
     plaintiffs successfully argued that intelligent design is a form of creationism, and that the school board policy thus
     violated the Establishment Clause of the First Amendment to the United States Constitution.[201]
     Eleven parents of students in Dover, Pennsylvania, sued the Dover Area School District over a statement that the
     school board required be read aloud in ninth-grade science classes when evolution was taught. The plaintiffs were
     represented by the American Civil Liberties Union (ACLU), Americans United for Separation of Church and State
     (AU) and Pepper Hamilton LLP. The National Center for Science Education (NCSE) acted as consultants for the
     plaintiffs. The defendants were represented by the Thomas More Law Center.[202] The suit was tried in a bench trial
     from September 26, 2005 to November 4, 2005 before Judge John E. Jones III. Ken Miller, Kevin Padian, Brian
     Alters, Robert Pennock, Barbara Forrest and John Haught served as expert witnesses for the prosecution. Michael
     Behe, Steve Fuller and Scott Minnich served as expert witnesses for the defense.
     On December 20, 2005 Judge Jones issued his 139-page findings of fact and decision, ruling that the Dover mandate
     was unconstitutional, and barring intelligent design from being taught in Pennsylvania's Middle District public
     school science classrooms. The eight Dover school board members who voted for the intelligent design requirement
     were all defeated in a November 8, 2005 election by challengers who opposed the teaching of intelligent design in a
     science class, and the current school board president stated that the board does not intend to appeal the ruling.[203]
     In his finding of facts, Judge Jones made the following condemnation of the Teach the Controversy strategy:
           "Moreover, ID’s backers have sought to avoid the scientific scrutiny which we have now determined that
           it cannot withstand by advocating that the controversy, but not ID itself, should be taught in science
           class. This tactic is at best disingenuous, and at worst a canard."
     Reaction
     Judge Jones himself anticipated that his ruling would be criticized, saying in his decision that:
           "Those who disagree with our holding will likely mark it as the product of an activist judge. If so, they
           will have erred as this is manifestly not an activist Court. Rather, this case came to us as the result of the
           activism of an ill-informed faction on a school board, aided by a national public interest law firm eager
           to find a constitutional test case on ID, who in combination drove the Board to adopt an imprudent and
           ultimately unconstitutional policy. The breathtaking inanity of the Board's decision is evident when
           considered against the factual backdrop which has now been fully revealed through this trial. The
           students, parents, and teachers of the Dover Area School District deserved better than to be dragged into
           this legal maelstrom, with its resulting utter waste of monetary and personal resources."[204]
     As Jones had predicted, John G. West, Associate Director of the Center for Science and Culture at Discovery
     Institute, said:
Intelligent design                                                                                                               421
           "The Dover decision is an attempt by an activist federal judge to stop the spread of a scientific idea and
           even to prevent criticism of Darwinian evolution through government-imposed censorship rather than
           open debate, and it won't work. He has conflated Discovery Institute's position with that of the Dover
           school board, and he totally misrepresents intelligent design and the motivations of the scientists who
           research it."[205]
     Newspapers have noted with interest that the judge is "a Republican and a churchgoer".[206] [207] [208] [209]
     Subsequently, the decision has been examined in a search for flaws and conclusions, partly by intelligent design
     supporters aiming to avoid future defeats in court. In the Spring of 2007 the University of Montana Law review
     published three articles.[210] In the first, David K. DeWolf, John G. West and Casey Luskin, all of the Discovery
     Institute, argued that intelligent design is a valid scientific theory, the Jones court should not have addressed the
     question of whether it was a scientific theory, and that the Kitzmiller decision will have no effect at all on the
     development and adoption of intelligent design as an alternative to standard evolutionary theory.[130] In the second
     Peter Irons responded, arguing that the decision was extremely well reasoned and spells the death knell for the
     intelligent design efforts to introduce creationism in public schools,[211] while in the third, DeWolf et al. answer the
     points made by Irons.[212] However, fear of a similar lawsuit has resulted in other school boards abandoning
     intelligent design "teach the controversy" proposals.[10]
     In April 2010, the American Academy of Religion issued Guidelines for Teaching About Religion in K‐12 Public
     Schools in the United States which included guidance that creation science or intelligent design should not be taught
     in science classes, as "Creation science and intelligent design represent worldviews that fall outside of the realm of
     science that is defined as (and limited to) a method of inquiry based on gathering observable and measurable
     evidence subject to specific principles of reasoning." However, they, as well as other "worldviews that focus on
     speculation regarding the origins of life represent another important and relevant form of human inquiry that is
     appropriately studied in literature or social sciences courses. Such study, however, must include a diversity of
     worldviews representing a variety of religious and philosophical perspectives and must avoid privileging one view as
     more legitimate than others."[213]
     Europe
     In June 2007 the Council of Europe's "Committee on Culture, Science and Education" issued a report, The dangers
     of creationism in education, which states "Creationism in any of its forms, such as 'intelligent design', is not based on
     facts, does not use any scientific reasoning and its contents are pathetically inadequate for science classes."[214] In
     describing the dangers posed to education by teaching creationism, it described intelligent design as "anti-science"
     and involving "blatant scientific fraud" and "intellectual deception" that "blurs the nature, objectives and limits of
     science" and links it and other forms of creationism to denialism. On October 4, 2007, the Council of Europe's
     Parliamentary Assembly approved a resolution stating that schools should "resist presentation of creationist ideas in
     any discipline other than religion", including "intelligent design" which it described as "the latest, more refined
     version of creationism", "presented in a more subtle way". The resolution emphasises that the aim of the report is not
     to question or to fight a belief, but to "warn against certain tendencies to pass off a belief as science".[215]
     In the United Kingdom, public education includes Religious Education as a compulsory subject, and many "faith
     schools" that teach the ethos of particular denominations. When it was revealed that a group called Truth in Science
     had distributed DVDs produced by the Discovery Institute affiliate Illustra Media[216] featuring Discovery Institute
     fellows making the case for design in nature,[217] and claimed they were being used by 59 schools,[218] the
     Department for Education and Skills (DfES) stated that "Neither creationism nor intelligent design are taught as a
     subject in schools, and are not specified in the science curriculum" (part of the National Curriculum which does not
     apply to independent schools or to Education in Scotland).[219] [220] The DfES subsequently stated that "Intelligent
Intelligent design                                                                                                              422
     design is not a recognised scientific theory; therefore, it is not included in the science curriculum", but left the way
     open for it to be explored in religious education in relation to different beliefs, as part of a syllabus set by a local
     Standing Advisory Council on Religious Education.[221] In 2006 the Qualifications and Curriculum Authority
     produced a Religious Education model unit in which pupils can learn about religious and nonreligious views about
     creationism, intelligent design and evolution by natural selection.[222] [223]
     On June 25, 2007, the UK Government responded to an e-Petition by saying that creationism and intelligent design
     should not be taught as science, though teachers would be expected to answer pupils' questions within the standard
     framework of established scientific theories.[224] Detailed government "Creationism teaching guidance" for schools
     in England was published on September 18, 2007. It states that "Intelligent design lies wholly outside of science",
     has no underpinning scientific principles, or explanations, and is not accepted by the science community as a whole.
     Though it should not be taught as science, "questions about creationism and intelligent design which arise in science
     lessons, for example, as a result of media coverage, could provide the opportunity to explain or explore why they are
     not considered to be scientific theories and, in the right context, why evolution is considered to be a scientific
     theory". However, "Teachers of subjects such as RE, history or citizenship may deal with creationism and intelligent
     design in their lessons".[13]
     The British Centre for Science Education lobbying group has the goal of "countering creationism within the UK" and
     has been involved in government lobbying in the UK in this regard.[225] However, in Northern Ireland the
     Democratic Unionist Party claims that the revised curriculum provides an opportunity for alternative theories to be
     taught, and has sought assurances that pupils will not lose marks if they give creationist or intelligent design answers
     to science questions.[226] In Lisburn the DUP has arranged that the City Council will write to post primary schools
     asking what their plans are to develop teaching material in relation to "creation, intelligent design and other theories
     of origin".[227]
     Plans by Dutch Education Minister Maria van der Hoeven to "stimulate an academic debate" on the subject in 2005
     caused a severe public backlash.[228] After the 2007 elections she was succeeded by Ronald Plasterk, described as a
     "molecular geneticist, staunch atheist and opponent of intelligent design".[229] As a reaction on this situation in the
     Netherlands, in Belgium the President of the Flemish Catholic Educational Board (VSKO) Mieke Van Hecke
     declared that: "Catholic scientists already accepted the theory of evolution for a long time and that intelligent design
     and creationism doesn't belong in Flemish Catholic schools. It's not the tasks of the politics to introduce new ideas,
     that's task and goal of science."[230]
     Relation to Islam
     Creationism has strong political support in many Islamic countries, and antievolutionary views are mainstream
     among academic theologians and scientists.[231] In general, Muslim creationists have partnered with the Institute for
     Creation Research for ideas and materials which they adapted to their own theological positions. Similarly, some use
     was made of intelligent design antievolution resources. Muzaffar Iqbal, a notable Muslim in Canada, signed the
     Scientific Dissent list of the Discovery Institute.[232] Ideas similar to intelligent design have been considered
     respected intellectual options among Muslims, and in Turkey many intelligent design books have been translated. In
     Istanbul in 2007, public meetings promoting intelligent design were sponsored by the local government,[231] and
     David Berlinski of the Discovery Institute was the keynote speaker at a meeting in May 2007.[233]
Intelligent design                                                                                                                                           423
     Australia
     The status of intelligent design in Australia is somewhat similar to that in the UK (see: Education in Australia).
     When the former Australian Federal Education Minister, Brendan Nelson, raised the notion of intelligent design
     being taught in science classes, the public outcry caused the minister to quickly concede that the correct forum for
     intelligent design, if it were to be taught, is in religious or philosophy classes.[234]
     See also
                                           •   Abiogenesis                    •   Intelligent falling
                                           •   Argument from poor design •        List of works on intelligent design
                                           •   Cosmological argument          •   Neo-Creationism
                                           •   Creation science               •   Old Earth creationism
                                           •   Flock of Dodos                 •   Santorum Amendment
                                           •   Flying Spaghetti Monster       •   Watchmaker analogy
     Notes
     [1] Discovery Institute. Top Questions-1.What is the theory of intelligent design? (http:/ / www. discovery. org/ csc/ topQuestions.
         php#questionsAboutIntelligentDesign) [cited 2007-05-13].
     [2] Intelligent Design and Evolution Awareness Center. Primer: Intelligent Design Theory in a Nutshell (http:/ / www. ideacenter. org/ stuff/
         contentmgr/ files/ 393410a2d36e9b96329c2faff7e2a4df/ miscdocs/ intelligentdesigntheoryinanutshell. pdf) [PDF]; 2004 [cited 2007-05-13].
         • Intelligent Design network. Intelligent Design (http:/ / www. intelligentdesignnetwork. org/ ); 2007 [cited 2007-05-13].
     [3] The Creationists, Expanded Edition. Harvard University Press; 2006. ISBN 0674023390. p. 373, 379–380.
     [4] "Q. Has the Discovery Institute been a leader in the intelligent design movement? A. Yes, the Discovery Institute's Center for Science and
         Culture. Q. And are almost all of the individuals who are involved with the intelligent design movement associated with the Discovery
         Institute? A. All of the leaders are, yes." Barbara Forrest, 2005, testifying in the Kitzmiller v. Dover Area School District trial. TalkOrigins
         Archive. Kitzmiller v. Dover Area School District Trial transcript: Day 6 (October 5), PM Session, Part 1. (http:/ / www. talkorigins. org/ faqs/
         dover/ day6pm. html); 2005 [cited 2007-07-19].
        •    "The Discovery Institute is the ideological and strategic backbone behind the eruption of skirmishes over science in school districts and
             state capitals across the country". In: Wilgoren, J. Politicized Scholars Put Evolution on the Defensive (http:/ / www. msu. edu/ course/ te/
             407/ FS05Sec3/ te408/ files/ Politicized Scholars Put Evolution on the Defensive - New York Times. pdf) [PDF].. August 21, 2005 [cited
             2007-07-19]. New York Times.
         • American Civil Liberties Union. Who is behind the ID movement? (http:/ / www. aclu. org/ religion/ schools/ 16371res20050916. html);
             September 16, 2005 [cited 2007-07-20].
         • Kahn, JP. The Evolution of George Gilder. The Author And Tech-Sector Guru Has A New Cause To Create Controversy With: Intelligent
             Design (http:/ / www. discovery. org/ scripts/ viewDB/ index. php?command=view& program=DI Main Page - News& id=2745). July 27,
             2005 [cited 2007-07-19]. The Boston Globe.
         • "Who's Who of Intelligent Design Proponents" (http:/ / www. discovery. org/ scripts/ viewDB/ filesDB-download.
             php?command=download& id=602) (PDF). Science & Religion Guide. Science & Theology News. November 2005. . Retrieved
             2007-07-20.
         • "The engine behind the ID movement is the Discovery Institute". Attie, Alan D.; Elliot Sober, Ronald L. Numbers, Richard M. Amasino,
             Beth Cox4, Terese Berceau, Thomas Powell and Michael M. Cox (2006). "Defending science education against intelligent design: a call to
             action" (http:/ / www. jci. org/ articles/ view/ 28449). Journal of Clinical Investigation 116:1134–1138. A publication of the American
             Society for Clinical Investigation.. doi:10.1172/JCI28449. . Retrieved 2007-07-20.
     [5] "Science and Policy: Intelligent Design and Peer Review" (http:/ / www. aaas. org/ spp/ dser/ 03_Areas/ evolution/ issues/ peerreview. shtml).
         American Association for the Advancement of Science. 2007. . Retrieved 2007-07-19.
     [6] "the writings of leading ID proponents reveal that the designer postulated by their argument is the God of Christianity". Kitzmiller v. Dover
         Area School District, 04 cv 2688 (December 20, 2005)., Ruling p. 26. A selection of writings and quotes of intelligent design supporters
         demonstrating this identification of the Christian God with the intelligent designer are found in the pdf Horse's Mouth (http:/ / home. kc. rr.
         com/ bnpndxtr/ download/ HorsesMouth-BP007. pdf) Archived (http:/ / web. archive. org/ web/ 20080627021627/ http:/ / home. kc. rr. com/
         bnpndxtr/ download/ HorsesMouth-BP007. pdf) June 27, 2008 at the Wayback Machine. (PDF) by Brian Poindexter, dated 2003.
     [7] William A. Dembski, when asked in an interview whether his research concluded that God is the Intelligent Designer, stated "I believe God
         created the world for a purpose. The Designer of intelligent design is, ultimately, the Christian God". Devon Williams (December 14, 2007).
         "CitizenLink: Friday Five: William A. Dembski" (http:/ / www. citizenlink. org/ content/ A000006139. cfm). Focus on the Family. . Retrieved
         2007-12-15.
Intelligent design                                                                                                                                               424
     [8] Kitzmiller v. Dover Area School District, 04 cv 2688 (December 20, 2005)., Context pg. 32 ff, citing Edwards v. Aguillard, 482 U.S. 578
         (http:/ / caselaw. lp. findlaw. com/ scripts/ getcase. pl?navby=CASE& court=US& vol=482& page=578) .
     [9] "ID is not a new scientific argument, but is rather an old religious argument for the existence of God. He traced this argument back to at least
         Thomas Aquinas in the 13th century, who framed the argument as a syllogism: Wherever complex design exists, there must have been a
         designer; nature is complex; therefore nature must have had an intelligent designer." "This argument for the existence of God was advanced
         early in the 19th century by Reverend Paley" (the teleological argument) "The only apparent difference between the argument made by Paley
         and the argument for ID, as expressed by defense expert witnesses Behe and Minnich, is that ID's 'official position' does not acknowledge that
         the designer is God." Kitzmiller v. Dover Area School District, 04 cv 2688 (December 20, 2005)., Ruling, p. 24.
     [10] Washington, D.C.: Center for Inquiry, Office of Public Policy. Understanding the Intelligent Design Creationist Movement: Its True Nature
         and Goals. (http:/ / www. centerforinquiry. net/ uploads/ attachments/ intelligent-design. pdf) [PDF]; 2007 May [cited 2007-08-06].
     [11] Stephen C. Meyer and Paul A. Nelson (May 1, 1996). "CSC – Getting Rid of the Unfair Rules (http:/ / www. discovery. org/ scripts/
         viewDB/ index. php?command=view& id=1685), A book review, Origins & Design"]. . Retrieved 2007-05-20.
        •   Phillip E. Johnson (August 31, 1996). "Starting a Conversation about Evolution" (http:/ / www. arn. org/ docs/ johnson/ ratzsch. htm).
            Phillip Johnson Files. Access Research Network. . Retrieved 2007-05-20.
        •   Stephen C. Meyer (December 1, 2002). "The Scientific Status of Intelligent Design: The Methodological Equivalence of Naturalistic and
            Non-Naturalistic Origins Theories" (http:/ / www. discovery. org/ scripts/ viewDB/ index. php?command=view& id=1780). Ignatius Press.
            .
        •   Kitzmiller v. Dover Area School District, 04 cv 2688 (December 20, 2005)., Whether ID Is Science
        •   Kitzmiller v. Dover Area School District, 04 cv 2688 (December 20, 2005)., Lead defense expert Professor Behe admitted that his
            broadened definition of science, which encompasses ID, would also include astrology.
        •   See also "Evolution of Kansas science standards continues as Darwin's theories regain prominence" (http:/ / www. iht. com/ articles/ ap/
            2007/ 02/ 13/ america/ NA-GEN-US-Kansas-Evolution-History. php). International Herald Tribune. February 13, 2007. . Retrieved
            2007-05-20.
     [12] See: 1) List of scientific societies explicitly rejecting intelligent design 2) Kitzmiller v. Dover page 83. 3) The Discovery Institute's A
         Scientific Dissent From Darwinism petition begun in 2001 has been signed by "over 700 scientists" as of August 20, 2006. A four day A
         Scientific Support for Darwinism petition gained 7733 signatories from scientists opposing ID. The AAAS, the largest association of scientists
         in the U.S., has 120,000 members, and firmly rejects ID (http:/ / www. aaas. org/ news/ releases/ 2002/ 1106id2. shtml). More than 70,000
         Australian scientists and educators condemn teaching of intelligent design in school science classes (http:/ / web. archive. org/ web/
         20060115091707/ http:/ / www. science. unsw. edu. au/ news/ 2005/ intelligent. html) List of statements from scientific professional
         organizations (http:/ / ncse. com/ media/ voices/ science) on the status intelligent design and other forms of creationism. According to The New
         York Times "There is no credible scientific challenge to the theory of evolution as an explanation for the complexity and diversity of life on
         earth". Dean, Cordelia (September 27, 2007). "Scientists Feel Miscast in Film on Life's Origin" (http:/ / www. nytimes. com/ 2007/ 09/ 27/
         science/ 27expelled. html?_r=2& oref=slogin& oref=slogin). New York Times. . Retrieved 2007-09-28.
     [13] "Teachernet, Document bank" (http:/ / www. teachernet. gov. uk/ docbank/ index. cfm?id=11890). Creationism teaching guidance. UK
         Department for Children, Schools and Families. September 18, 2007. . Retrieved 2007-10-01. "The intelligent design movement claims there
         are aspects of the natural world that are so intricate and fit for purpose that they cannot have evolved but must have been created by an
         'intelligent designer'. Furthermore they assert that this claim is scientifically testable and should therefore be taught in science lessons.
         Intelligent design lies wholly outside of science. Sometimes examples are quoted that are said to require an 'intelligent designer'. However,
         many of these have subsequently been shown to have a scientific explanation, for example, the immune system and blood clotting
         mechanisms.
         Attempts to establish an idea of the 'specified complexity' needed for intelligent design are surrounded by complex mathematics. Despite this,
         the idea seems to be essentially a modern version of the old idea of the "God-of-the-gaps". Lack of a satisfactory scientific explanation of
         some phenomena (a 'gap' in scientific knowledge) is claimed to be evidence of an intelligent designer."
     [14] Nature Methods Editorial. An intelligently designed response. Nat. Methods. 2007;4(12):983. doi:10.1038/nmeth1207-983 (http:/ / dx. doi.
         org/ 10. 1038/ nmeth1207-983).
     [15] Mark Greener. Taking on creationism. Which arguments and evidence counter pseudoscience? (http:/ / www. ncbi. nlm. nih. gov/ pmc/
         articles/ PMC2267227/ ). EMBO Reports. 2007;8(12):1107–1109. doi:10.1038/sj.embor.7401131 (http:/ / dx. doi. org/ 10. 1038/ sj. embor.
         7401131). PMID 18059309.
     [16] National Science Teachers Association, a professional association of 55,000 science teachers and administrators National Science Teachers
         Association (August 3, 2005). "National Science Teachers Association Disappointed About Intelligent Design Comments Made by President
         Bush" (http:/ / www. nsta. org/ about/ pressroom. aspx?id=50794). Press release. . "We stand with the nation's leading scientific organizations
         and scientists, including Dr. John Marburger, the president's top science advisor, in stating that intelligent design is not science. ...It is simply
         not fair to present pseudoscience to students in the science classroom."
     [17] David Mu. Trojan Horse or Legitimate Science: Deconstructing the Debate over Intelligent Design (http:/ / www. hcs. harvard. edu/ ~hsr/
         fall2005/ mu. pdf) [PDF]. Harvard Science Review. Fall 2005;19(1). "For most members of the mainstream scientific community, ID is not a
         scientific theory, but a creationist pseudoscience"."
     [18] American Association for the Advancement of Science. Professional Ethics Report (http:/ / www. aaas. org/ spp/ sfrl/ per/ per26. pdf)
         [PDF]; 2001. "Creationists are repackaging their message as the pseudoscience of intelligent design theory."
     [19] Kitzmiller v. Dover Area School District, 04 cv 2688 (December 20, 2005)., pp. 31 – 33.
Intelligent design                                                                                                                                         425
     [20] Discovery Institute. Media Backgrounder: Intelligent Design Article Sparks Controversy (http:/ / www. discovery. org/ scripts/ viewDB/
         index. php?command=view& id=2190); September 7, 2004.
        •     James M. Kushiner. Berkeley's Radical (http:/ / touchstonemag. com/ archives/ article. php?id=15-05-037-i); 2002 June.
        •     Jodi Wilgoren. Politicized Scholars Put Evolution on the Defensive (http:/ / www. msu. edu/ course/ te/ 407/ FS05Sec3/ te408/ files/
              Politicized Scholars Put Evolution on the Defensive - New York Times. pdf) [PDF].. August 21, 2005.
         • Discovery's Creation (http:/ / seattleweekly. com/ 2006-02-01/ news/ discovery-s-creation. php). February 1, 2006 [cited 2007-07-27].
              Seattle Weekly.
     [21] Kitzmiller v. Dover Area School District, 04 cv 2688 (December 20, 2005)., Conclusion of Ruling.
     [22] Stanford Encyclopedia of Philosophy. Plato's Timaeus (http:/ / plato. stanford. edu/ entries/ plato-timaeus/ ); October 25, 2005 [cited
         2007-07-22].
     [23] Aristotle, Metaphysics Bk. 12
     [24] See also, e.g.
         *Richard Hooker (1996) "Aristotle" (http:/ / wsu. edu/ ~dee/ GREECE/ ARIST. HTM). "Aristotle's analysis of phenomenon and change, then,
         is fundamentally teleological."
         *Monte Ransome Johnson (2005) Aristotle on teleology, Clarendon Press.
     [25] Linda Trinkaus Zagzebski (2006). The Philosophy of Religion: An Historical Introduction, 31; Cicero, De Natura Deorum, Book I, 36–37,
         Latin Library (http:/ / www. thelatinlibrary. com/ cicero/ nd. shtml).
     [26] Thomas Aquinas, Summa Theologiae " Thomas Aquinas' 'Five Ways' (http:/ / web. archive. org/ web/ 20070926220422/ http:/ / www.
         faithnet. org. uk/ AS+ Subjects/ Philosophyofreligion/ fiveways. htm) ( archive link (http:/ / web. archive. org/ web/ 20070808152431/ http:/ /
         www. faithnet. org. uk/ AS+ Subjects/ Philosophyofreligion/ fiveways. htm))" in faithnet.org.uk.
     [27] William Paley, Natural Theology: or, Evidences of the Existence and Attributes of the Deity (http:/ / darwin-online. org. uk/ content/
         frameset?itemID=A142& viewtype=text& pageseq=1), 1809, London, Twelfth Edition.
     [28] Darwin Correspondence Project. Letter 2998 — Darwin, C. R. to Gray, Asa, 26 Nov (1860) (http:/ / www. darwinproject. ac. uk/
         entry-2998) [cited 2010-08-11].
     [29] Gerard Radnitzky. Evolutionary epistemology, rationality, and the sociology of knowledge. Open Court Publishing; 1993. ISBN
         0812690397. p. 140.
     [30] See, e.g., the publisher's editorial description of the 2006 paperback printing of William Paley (1803) Natural Theology" : "William Paley's
         classic brings depth to the history of intelligent design arguments. The contrivance of the eye, the ear, and numerous other anatomical
         features throughout the natural world are presented as arguments for God's presence and concern. While there are distinctive differences
         between Paley's argument and those used today by intelligent design theorists and creationists, it remains a fascinating glimpse of the
         nineteenth-century's debate over the roles of religion and science".
        •    David C. Steinmetz (2005) "The Debate on Intelligent Design" in The Christian Century, (December 27, 2005, pp. 27–31.)
        •    Leading intelligent design proponent William Dembski (2001) argues the opposing view in Is Intelligent Design a form of natural
             theology? (http:/ / www. designinference. com/ documents/ 2001. 03. ID_as_nat_theol. htm)
     [31] Forrest, Barbara. Know Your Creationists: Know Your Allies (http:/ / www. dailykos. com/ story/ 2006/ 3/ 11/ 8448/ 52824)
     [32] Stephen C. Meyer. Access Research Network. We Are Not Alone (http:/ / www. arn. org/ docs/ meyer/ sm_notalone. htm); 1986 March
         [cited 2007-10-10].
     [33] Charles B. Thaxton, Ph.D.. Christian Leadership Ministries. DNA, Design and the Origin of Life (http:/ / www. origins. org/ articles/
         thaxton_dnadesign. html); November 13–16, 1986 [cited 2007-10-10].
     [34] Charles B. Thaxton. In Pursuit of Intelligent Causes: Some Historical Background (http:/ / www. leaderu. com/ offices/ thaxton/ docs/
         inpursuit. html); June 23–26, 1988, revised July 1988 and May 1991 [cited 2007-10-06].
     [35] Dembski: "Intelligent design is just the Logos theology of John's Gospel restated in the idiom of information theory," Touchstone Magazine.
         Volume 12, Issue4: July/August, 1999 (http:/ / touchstonemag. com/ archives/ issue. php?id=49)
     [36] Phillip Johnson: "Our strategy has been to change the subject a bit so that we can get the issue of Intelligent Design, which really means the
         reality of God, before the academic world and into the schools." Johnson 2004. Christianity.ca. Let's Be Intelligent About Darwin (http:/ /
         www. christianity. ca/ news/ social-issues/ 2004/ 03. 001. html) Archived (http:/ / web. archive. org/ web/ 20070608233455/ http:/ / www.
         christianity. ca/ news/ social-issues/ 2004/ 03. 001. html) June 8, 2007 at the Wayback Machine.. "This isn't really, and never has been a
         debate about science. It's about religion and philosophy." Johnson 1996. World Magazine. Witnesses For The Prosecution (http:/ / www.
         leaderu. com/ pjohnson/ world2. html). "So the question is: "How to win?" That's when I began to develop what you now see full-fledged in
         the "wedge" strategy: "Stick with the most important thing"—the mechanism and the building up of information. Get the Bible and the Book of
         Genesis out of the debate because you do not want to raise the so-called Bible-science dichotomy. Phrase the argument in such a way that you
         can get it heard in the secular academy and in a way that tends to unify the religious dissenters. That means concentrating on, "Do you need a
         Creator to do the creating, or can nature do it on its own?" and refusing to get sidetracked onto other issues, which people are always trying
         to do." Johnson 2000. Touchstone magazine. Berkeley's Radical An Interview with Phillip E. Johnson (http:/ / web. archive. org/ web/
         20070609033219/ http:/ / www. touchstonemag. com/ docs/ issues/ 15. 5docs/ 15-5pg40. html) at the Wayback Machine (archived June 9,
         2007).
     [37] Stephen C. Meyer: "I think the designer is God ..." ( Darwin, the marketing of Intelligent Design (http:/ / www. bringyou. to/ apologetics/
         p90. htm) . Nightline ABC News, with Ted Koppel, August 10, 2005); Nancy Pearcey: "By contrast, design theory demonstrates that
         Christians can sit in the supernaturalist’s “chair” even in their professional lives, seeing the cosmos through the lens of a comprehensive
Intelligent design                                                                                                                                             426
         biblical worldview. Intelligent Design steps boldly into the scientific arena to build a case based on empirical data. It takes Christianity out of
         the ineffectual realm of value and stakes out a cognitive claim in the realm of objective truth. It restores Christianity to its status as genuine
         knowledge, equipping us to defend it in the public arena". ( Total Truth (http:/ / web. archive. org/ web/ 20061028204903/ http:/ / rightreason.
         ektopos. com/ archives/ 2005/ 09/ why_sciencetype. html), Crossway Books, June 29, 2004, ISBN 1581344589, pp. 204-205)
     [38] Leon Lynn. Rethinking Schools Online (http:/ / www. rethinkingschools. org/ archive/ 12_02/ panda. shtml); Winter 1997/98 [cited
         2009-02-08].
     [39] Nick Matzke. The Panda's Thumb. The true origin of "intelligent design" (http:/ / pandasthumb. org/ archives/ 2007/ 08/ the-true-origin.
         html); August 14, 2007 [cited 2010-01-21].
         Journals: Scientific American (1846 - 1869) (http:/ / digital. library. cornell. edu/ cgi/ t/ text/ pageviewer-idx?c=scia;cc=scia;rgn=full
         text;idno=scia0002-48;didno=scia0002-48;view=image;seq=00383;node=scia0002-48:1) [cited 2010-01-21].
     [40] Dove, Patrick Edward, The theory of human progression, and natural probability of a reign of justice. London, Johnstone & Hunter, 1850.
         LC 08031381 "Intelligence-Intelligent Design".
     [41] Charles Darwin. Letter 3154—Darwin, C. R. to Herschel, J. F. W., 23 May 1861 (http:/ / www. darwinproject. ac. uk/ darwinletters/
         calendar/ entry-3154. html); May 23, 1861.
     [42] The British Association. September 20, 1873:10; col A.. The Times.
     [43] William P. Alston. In: Paul Edwards. Encyclopedia of Philosophy. New York City, London: Macmillan Publishing Company, The Free
         Press, Collier Macmillan Publishers; 1967. ISBN 0028949900.
     [44] Robert Nozick. Anarchy, State, and Utopia. USA: Basic Books; 1974. ISBN 0465097200. p. 19.
     [45] James E. Horigan. Chance or Design?. Philosophical Library; 1979.
     [46] Nicholas Timmins. Evolution according to Hoyle: Survivors of disaster in an earlier world (http:/ / telicthoughts. com/
         sir-fred-hoyle-and-the-origins-of-id/ ). January 13, 1982:22. "F. Hoyle stated in a 1982 speech: '...one arrives at the conclusion that
         biomaterials with their amazing measure or order must be the outcome of intelligent design.'"
     [47] Nick Matzke. National Center for Science Education. NCSE Resource -- 9.0. Matzke (2006): The Story of the Pandas Drafts (http:/ / ncse.
         com/ rncse/ 26/ 1-2/ design-trial); 2006 [cited 2009-11-18]. *Nick Matzke. National Center for Science Education. Missing Link discovered!
         (http:/ / www2. ncseweb. org/ wp/ ?p=80); 2006 [ archived (http:/ / web. archive. org/ web/ 20070114121029/ http:/ / www2. ncseweb. org/
         wp/ ?p=80) 2007-01-14; cited 2009-11-18].
     [48] Jonathan Witt. Discovery Institute. Evolution News & Views: Dover Judge Regurgitates Mythological History of Intelligent Design (http:/ /
         www. evolutionnews. org/ 2005/ 12/ post_6. html); December 20, 2005 [cited 2007-10-05].
     [49] DarkSyde. Daily Kos: Know Your Creationists: Know Your Allies (http:/ / www. dailykos. com/ story/ 2006/ 3/ 11/ 8448/ 52824); March
         11, 2006 [cited 2007-10-05].
     [50] William Safire. On Language: Neo-Creo (http:/ / www. nytimes. com/ 2005/ 08/ 21/ magazine/ 21ONLANGUAGE. html?position=&
         ei=5090& en=f2de0d764cc7e0e8& ex=1282276800& adxnnl=1& partner=rssuserland& emc=rss& pagewanted=print&
         adxnnlx=1132902202-gyP0H4EZfG7IeNHPMWlcBw). August 21, 2005.
     [51] Nick Matzke. National Center for Science Education. NCSE Resource (http:/ / ncse. com/ creationism/ analysis/ critique-pandas-people);
         2004 [cited 2007-09-24].
     [52] Richard P. Aulie. National Association of Biology Teachers. A Reader's Guide to Of Pandas and People (http:/ / www. stephenjaygould.
         org/ ctrl/ archive/ design/ aulie_of-pandas. html); 1998 [cited 2007-10-05].
     [53] Eugenie C. Scott. Biological design in science classrooms (http:/ / www. pnas. org/ content/ 104/ suppl. 1/ 8669. full). Proceedings of the
         National Academy of Sciences. May 15, 2007 [cited 2009-06-02];104(Suppl 1):8669–8676. doi:10.1073/pnas.0701505104 (http:/ / dx. doi.
         org/ 10. 1073/ pnas. 0701505104). PMID 17494747. PMC 1876445 (http:/ / www. ncbi. nlm. nih. gov/ pmc/ articles/ PMC1876445/ ).
     [54] Nick Matzke; Jon Buell (October 13, 2005). "I guess ID really was "Creationism's Trojan Horse" after all" (http:/ / www. pandasthumb. org/
         archives/ 2005/ 10/ i_guess_id_real. html). The Panda's Thumb. . Retrieved 2009-06-02.
     [55] William A. Dembski. Expert Witness Report: The Scientific Status of Intelligent Design (http:/ / www. designinference. com/ documents/
         2005. 09. Expert_Report_Dembski. pdf) [PDF]. March 29, 2005 [cited 2009-06-02].
     [56] Behe, Michael (1997): Molecular Machines: Experimental Support for the Design Inference (http:/ / www. apologetics. org/
         MolecularMachines/ tabid/ 99/ Default. aspx)
     [57] Irreducible complexity of these examples is disputed; see Kitzmiller, pp. 76–78, and Ken Miller Webcast (http:/ / www. pandasthumb. org/
         archives/ 2006/ 01/ ken_miller_webc. html)
     [58] The Collapse of "Irreducible Complexity" Kenneth R. Miller Brown University (http:/ / www. millerandlevine. com/ km/ evol/ design2/
         article. html)
     [59] John H. McDonald's " reducibly complex mousetrap (http:/ / udel. edu/ ~mcdonald/ mousetrap. html)"
     [60] David Ussery, " A Biochemist's Response to 'The Biochemical Challenge to Evolution' (http:/ / www. cbs. dtu. dk/ staff/ dave/ Behe. html)"
     [61] For example, Bridgham et al. (http:/ / www. sciencemag. org/ cgi/ content/ abstract/ 312/ 5770/ 97) showed that gradual evolutionary
         mechanisms can produce complex protein-protein interaction systems from simpler precursors. Bridgham et al.. Evolution of
         Hormone-Receptor Complexity by Molecular Exploitation. Science. 2006;312(5770):97–101. doi:10.1126/science.1123348 (http:/ / dx. doi.
         org/ 10. 1126/ science. 1123348). PMID 16601189.
     [62] Devolution (http:/ / www. newyorker. com/ archive/ 2005/ 05/ 30/ 050530fa_fact). May 30, 2005. The New Yorker. This article draws from
         the following exchange of letters in which Behe admits to sloppy prose and non-logical proof: Discovery Institute. Has Darwin met his match?
         Letters—An exchange over ID (http:/ / www. discovery. org/ scripts/ viewDB/ index. php?program=CRSC Responses& command=view&
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     [94] Marcus R. Ross. Who Believes What? Clearing up Confusion over Intelligent Design and Young-Earth Creationism (http:/ / nagt. org/ files/
         nagt/ jge/ abstracts/ Ross_v53n3p319. pdf) [PDF]. Journal of Geoscience Education. May, 2005;53(3):319–323.
     [95] Ronald L. Numbers. The Creationists: From Scientific Creationism to Intelligent Design, Expanded Edition. Cambridge, Massachusetts:
         Harvard University Press; November 30, 2006. ISBN 0674023390.
     [96] Forrest, B.C. and Gross, P.R.. Evolution and the Wedge of Intelligent Design: The Trojan Horse Strategy. Oxford: Oxford University Press;
         2003. ISBN 0195157427.
     [97] Robert T. Pennock. Wizards of ID: Reply to Dembski. In: Robert T. Pennock. Intelligent Design Creationism and Its Critics: Philosophical,
         Theological, and Scientific Perspectives (http:/ / www. metanexus. net/ magazine/ ArticleDetail/ tabid/ 68/ id/ 2645/ Default. aspx).
         Cambridge, Massachusetts: MIT Press; 2001. ISBN 0262661241. "Dembski chides me for never using the term "intelligent design" without
         conjoining it to "creationism". He implies (though never explicitly asserts) that he and others in his movement are not creationists and that it
         is incorrect to discuss them in such terms, suggesting that doing so is merely a rhetorical ploy to "rally the troops". (2) Am I (and the many
         others who see Dembski's movement in the same way) misrepresenting their position? The basic notion of creationism is the rejection of
         biological evolution in favor of special creation, where the latter is understood to be supernatural. Beyond this there is considerable
         variability..." p. 645–667.; Pennock, Robert T.. Tower of Babel: Evidence Against the New Creationism. Cambridge, Massachusetts: MIT
         Press; 1999.
     [98] Eugenie Scott. The Creation/Evolution Continuum (http:/ / ncse. com/ creationism/ general/ creationevolution-continuum). NCSE Reports.
         1999;19(4):16–17, 23–25.; Scott, Eugenie C.. Evolution vs. Creationism: An Introduction. Westport, Connecticut: Greenwood Press; 2004.
         ISBN 0520246500.
     [99] "The social consequences of materialism have been devastating. As symptoms, those consequences are certainly worth treating. However,
         we are convinced that in order to defeat materialism, we must cut it off at its source. That source is scientific materialism. This is precisely our
         strategy. If we view the predominant materialistic science as a giant tree, our strategy is intended to function as a 'wedge' that, while
         relatively small, can split the trunk when applied at its weakest points. The very beginning of this strategy, the 'thin edge of the wedge,' was
         Phillip Johnson's critique of Darwinism begun in 1991 in Darwinism on Trial, and continued in Reason in the Balance and Defeating
         Darwinism by Opening Minds. Michael Behe's highly successful Darwin's Black Box followed Johnson's work. We are building on this
         momentum, broadening the wedge with a positive scientific alternative to materialistic scientific theories, which has come to be called the
         theory of intelligent design (ID). Design theory promises to reverse the stifling dominance of the materialist worldview, and to replace it with
         a science consonant with Christian and theistic convictions". Wedge Document (http:/ / www. antievolution. org/ features/ wedge. pdf)
         Discovery Institute, 1999. (PDF file)
     [100] "I have built an intellectual movement in the universities and churches that we call The Wedge, which is devoted to scholarship and writing
         that furthers this program of questioning the materialistic basis of science. [...] Now the way that I see the logic of our movement going is like
         this. The first thing you understand is that the Darwinian theory isn't true. It's falsified by all of the evidence and the logic is terrible. When
         you realize that, the next question that occurs to you is, well, where might you get the truth? [...] I start with John 1:1. In the beginning was
         the word. In the beginning was intelligence, purpose, and wisdom. The Bible had that right. And the materialist scientists are deluding
         themselves." Johnson 1999. Reclaiming America for Christ Conference. How the Evolution Debate Can Be Won (http:/ / web. archive. org/
         web/ 20071107005414/ http:/ / www. coralridge. org/ specialdocs/ evolutiondebate. asp)
     [101] Discovery Institute fellows and staff (http:/ / www. discovery. org/ fellows/ ). "Center for Science and Culture fellows and staff" (http:/ /
         www. discovery. org/ csc/ fellows. php). .
     [102] Barbara Forrest. The Wedge at Work: Intelligent Design Creationism and Its Critics (http:/ / www. infidels. org/ library/ modern/
         barbara_forrest/ wedge. html); 2001.
     [103] "...intelligent design does not address metaphysical and religious questions such as the nature or identity of the designer," and "...the nature,
         moral character and purposes of this intelligence lie beyond the competence of science and must be left to religion and philosophy". In:
         Discovery Institute. Truth Sheet # 09-05 Does intelligent design postulate a "supernatural creator? (http:/ / www. discovery. org/ scripts/
         viewDB/ filesDB-download. php?command=download& id=565) [cited 2007-07-19].
     [104] Phillip Johnson. 'Keeping the Darwinists Honest' an interview with Phillip Johnson. 1999. "Intelligent Design is an intellectual movement,
         and the Wedge strategy stops working when we are seen as just another way of packaging the Christian evangelical message. [...] The
         evangelists do what they do very well, and I hope our work opens up for them some doors that have been closed".
     [105] Phillip Johnson. Touchstone: A Journal of Mere Christianity. 1999. "...the first thing that has to be done is to get the Bible out of the
         discussion. ...This is not to say that the biblical issues are unimportant; the point is rather that the time to address them will be after we have
         separated materialist prejudice from scientific fact". The Wedge (http:/ / www. arn. org/ docs/ johnson/ le_wedge. htm)
     [106] William Dembski, 1998. The Design Inference.
     [107] Dembski, 1999. Intelligent Design: The Bridge Between Science and Theology, p. 210.
     [108] William Dembski. Intelligent Design's Contribution to the Debate Over Evolution: A Reply to Henry Morris (http:/ / www.
         designinference. com/ documents/ 2005. 02. Reply_to_Henry_Morris. htm); 2005.
     [109] Barbara Forrest. Expert Testimony. Kitzmiller v. Dover Area School District trial transcript, Day 6 (October 5) "What I am talking about is
        the essence of intelligent design, and the essence of it is theistic realism as defined by Professor Johnson. Now that stands on its own quite
        apart from what their motives are. I'm also talking about the definition of intelligent design by Dr. Dembski as the Logos theology of John's
        Gospel. That stands on its own. [...] Intelligent design, as it is understood by the proponents that we are discussing today, does involve a
        supernatural creator, and that is my objection. And I am objecting to it as they have defined it, as Professor Johnson has defined intelligent
        design, and as Dr. Dembski has defined intelligent design. And both of those are basically religious. They involve the supernatural".
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     [110] Center for Inquiry, Office of Public Policy. Understanding the Intelligent Design Creationist Movement: Its True Nature and Goals. A
        Position Paper (http:/ / www. centerforinquiry. net/ uploads/ attachments/ intelligent-design. pdf) [PDF]; 2007 May.
     [111] H. Ross. Pasadena, California: Reasons to Believe. More than intelligent design (http:/ / www. reasons. org/ resources/ fff/ 2002issue10/
        index. shtml#more_than_id); 2002 [cited April 25, 2007].
     [112] Henry M. Morris. Santee, California: Institute for Creation Research. Design is not enough! (http:/ / www. icr. org/ article/ 859/ 17/ ); 1999
        [cited April 25, 2007].
     [113] Carl Wieland. Answers in Genesis. AiG's views on the Intelligent Design movement (http:/ / www. answersingenesis. org/ docs2002/
        0830_IDM. asp); 2002 [cited April 25, 2007].
     [114] Harris Interactive. Nearly Two-thirds of U.S. Adults Believe Human Beings Were Created by God (http:/ / www. harrisinteractive. com/
        harris_poll/ index. asp?PID=581); July 6, 2005 [cited 2007-07-13].
     [115] New Mexicans for Science and Reason. Sandia National Laboratories says that the Intelligent Design Network (IDNet-NM/Zogby) "Lab
        Poll" is BOGUS! (http:/ / www. nmsr. org/ id-poll. htm) [cited 2007-07-13].
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Intelligent design                                                                                                                                          430
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        intuition most people have and making it a scientific and academic enterprise ... We are removing the most important cultural roadblock to
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Intelligent design                                                                                                                                              431
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        expectations in the scientific community that a scientific theory be testable, dynamic, correctible, progressive, based upon multiple
        observations, and provisional,
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     [161] Intelligent design fails to pass Occam's razor. Adding entities (an intelligent agent, a designer) to the equation is not strictly necessary to
        explain events. See, e.g., Branden Fitelson, et al.. How Not to Detect Design–Critical Notice: William A. Dembski The Design Inference. In:
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        ~inbios/ schneider/ evolution. htm); 2005. "Q: Why couldn't intelligent design also be a scientific theory? A: The idea of intelligent design
        might or might not be true, but when presented as a scientific hypothesis, it is not useful because it is based on weak assumptions, lacks
        supporting data and terminates further thought."
     [163] The designer is not falsifiable, since its existence is typically asserted without sufficient conditions to allow a falsifying observation. The
        designer being beyond the realm of the observable, claims about its existence can be neither supported nor undermined by observation,
        making intelligent design and the argument from design analytic a posteriori arguments. See, e.g., Kitzmiller v. Dover Area School District, cv
        2688 (December 20, 2005). Ruling, p. 22 and p. 77.
     [164] That intelligent design is not empirically testable stems from the fact that it violates a basic premise of science, naturalism. See, e.g.,
        Kitzmiller v. Dover Area School District, cv 2688 (December 20, 2005). Ruling, p. 22 and p. 66.
     [165] Intelligent design professes to offer an answer that does not need to be defined or explained, the intelligent agent, designer. By asserting a
        conclusion that cannot be accounted for scientifically, the designer, intelligent design cannot be sustained by any further explanation, and
        objections raised to those who accept intelligent design make little headway. Thus intelligent design is not a provisional assessment of data
        which can change when new information is discovered. Once it is claimed that a conclusion that need not be accounted for has been
        established, there is simply no possibility of future correction. The idea of the progressive growth of scientific ideas is required to explain
        previous data and any previously unexplainable data. See, e.g., the brief explanation in Kitzmiller v. Dover Area School District, 04 cv 2688
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        and scientists, including Dr. John Marburger, the president's top science advisor, in stating that intelligent design is not science. ...It is simply
        not fair to present pseudoscience to students in the science classroom."
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            allegiance to atheistic materialism; they're alarmed because intelligent design is junk science."
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        their work to independent review and have established at least two purportedly "peer-reviewed" journals for ID articles. However, one has
        languished for want of material and quietly ceased publication, while the other has a more overtly philosophical orientation. Both journals
        employ a weak standard of "peer review" that amounts to no more than vetting by the editorial board or society fellows."
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        claims for peer review, notably Campbell and Meyer (2003) and the e-journal PCID, the reviewers are themselves ardent supporters of
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     [193] Natural History Magazine. Detecting Design in the Natural Sciences (http:/ / www. actionbioscience. org/ evolution/ nhmag. html); 2002
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        [cited 2007-07-18]. "In fact, the signals actually sought by today's SETI searches are not complex, as the ID advocates assume. [...] If SETI
        were to announce that we're not alone because it had detected a signal, it would be on the basis of artificiality"
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        evidence that humans can make such things, as well as many other attributes including the designer's abilities, needs, and desires. With ID,
        proponents assert that they refuse to propose hypotheses on the designer's identity, do not propose a mechanism, and the designer,
Intelligent design                                                                                                                                            433
        he/she/it/they, has never been seen. In that vein, defense expert Professor Minnich agreed that in the case of human artifacts and objects, we
        know the identity and capacities of the human designer, but we do not know any of those attributes for the designer of biological life. In
        addition, Professor Behe agreed that for the design of human artifacts, we know the designer and its attributes and we have a baseline for
        human design that does not exist for design of biological systems. Professor Behe's only response to these seemingly insurmountable points of
        disanalogy was that the inference still works in science fiction movies".—Kitzmiller v. Dover Area School District, cv 2688 (December 20,
        2005)., p. 81
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Intelligent design                                                                                                                                      434
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References
     Further reading
     • Gross PR; Forrest B. Creationism's Trojan Horse: the Wedge of Intelligent Design. Oxford [Oxfordshire]: Oxford
       University Press; 2004. ISBN 0-19-515742-7. Preview (http://books.google.ca/books?id=raqJjM9LkeAC&
       printsec=frontcover#v=onepage&q&f=false) at Google Books
     • Humes E. Monkey Girl: Evolution, Education, Religion, and the Battle for America's Soul. New York, N.Y:
       ECCO; 2007. ISBN 0-06-088548-3.
     • Edis T; Young M. Why Intelligent Design Fails: A Scientific Critique of the New Creationism. New Brunswick,
       N.J: Rutgers University Press; 2006. ISBN 0-8135-3872-6. Preview (http://books.google.ca/
       books?id=hYLKdtlVeQgC&printsec=frontcover#v=onepage&q&f=false) at Google Books
     • Why Darwin Matters: The Case Against Intelligent Design. New York: Henry Holt; 2007. ISBN
       978-0-8050-8306-4.
     • Slack G. The Battle over the Meaning of Everything: Evolution, Intelligent Design, and a School Board in Dover,
       PA. San Francisco: Jossey-Bass; 2007. ISBN 0-7879-8786-7. Preview (http://books.google.ca/
       books?id=1kpx8HrQ08cC&printsec=frontcover#v=onepage&q&f=false) at Google Books
     ID perspectives
     • Access Research Network (http://www.arn.org/)
     • Design Inference: The website of William A. Dembski (http://www.designinference.com/)
Intelligent design                                                                                                      435
     • Discovery Institute, Center for Science and Culture (http://www.discovery.org/) (Hub of the intelligent design
       movement)
     • EvolutionNews.org (http://www.evolutionnews.org/) Discovery Institute website tracking media coverage of
       intelligent design.
     • ID The Future (http://www.idthefuture.com/) A multiple contributor weblog by Discovery Institute fellows.
     • International Society for Complexity, Information, and Design (ISCID) (http://www.iscid.org/)
     • Uncommon Descent (http://www.uncommondescent.com/) William Dembski's blog
     Non-ID perspectives
     • Scientific American - 15 Answers to Creationist Questions (http://www.sciam.com/article.
       cfm?id=15-answers-to-creationist)
     • ACLU site on Intelligent Design (http://www.aclu.org/religion/intelligentdesign/index.html)
     • Intelligent Design? (http://www.naturalhistorymag.com/darwinanddesign.html) http://web.archive.org/
       web/20070620122151/http://www.naturalhistorymag.com/darwinanddesign.html special feature in the
       Natural History Magazine
     • Internet Encyclopedia of Philosophy: Design Arguments for the Existence of God (http://www.iep.utm.edu/d/
       design.htm)
     • National Center for Science Education What Is Intelligent Design Creationism? (http://ncse.com/creationism/
       general/what-is-intelligent-design-creationism)
     • Resolution from the American Association for the Advancement of Science (http://www.aaas.org/news/
       releases/2002/1106id2.shtml)
     • Science and Creationism: A View from the National Academy of Sciences (http://www.nap.edu/openbook.
       php?isbn=0309064066) Second Edition (1999)
     • Talk Origins Archive (http://www.talkorigins.org/) (Archive of the UseNet discussion group talk.origins)
     • 139 page in-depth analysis of intelligent design, irreducible complexity, and the book Of Pandas and People
       (http://www.pamd.uscourts.gov/kitzmiller/kitzmiller_342.pdf) by the Kitzmiller v. Dover Area School
       District judge
     • Kitzmiller: An Intelligent Ruling on 'Intelligent Design' (http://jurist.law.pitt.edu/forumy/2005/12/
       kitzmiller-intelligent-ruling-on.php), JURIST
     • ID and Creationism (http://www.csicop.org/intelligentdesignwatch/differences.html)
     • The Design Argument (http://philosophy.wisc.edu/sober/design argument 11 2004.pdf) Elliott Sober, 2004.
     • Short discussion on Natural Knowledge and Natural Design as a contrast to Intelligent Design (http://
       richarddawkins.net/article,129,Natural-Knowledge-and-Natural-Design,Richard-Dawkins) http://web.archive.
       org/web/20080307082606/http://richarddawkins.net/
       article,129,Natural-Knowledge-and-Natural-Design,Richard-Dawkins by Richard Dawkins
     Media articles
     • Judgment Day: Intelligent Design on Trial (http://www.pbs.org/wgbh/nova/id/) A PBS-NOVA documentary
       on the Dover, PA Intelligent Design trial in 2005.(PBS)
     • Discovery's Creation (http://www.seattleweekly.com/2006-02-01/news/discovery-s-creation/) An overview
       of the origin of the intelligent design movement. (Seattle Weekly)
     • Intelligent Design vs. Evolution (http://www.tvw.org/MediaPlayer/Archived/WME.
       cfm?EVNum=2006040103&TYPE=V) debate between paleontologist Peter Ward and Stephen Meyer
       co-founder of the Discovery Institute
     • Intelligent Design Deja Vu (http://www.washingtonpost.com/wp-dyn/content/article/2005/12/16/
       AR2005121601559.html) What would "intelligent design" science classes look like? All we have to do is look
       inside some 19th century textbooks. (The Washington Post)
Intelligent design                                                                                                              436
     and morality played a key role not only in the rise of eugenics, but also in euthanasia, infanticide, abortion, and racial
     extermination, all ultimately embraced by the Nazis. Many critics contend this.
     In his book The End of Faith, Sam Harris argues that Nazism was largely a continuation of Christian anti-Semitism.
     Jim Walker has compiled a list of 129 quotes from Mein Kampf in which Hitler described himself as a Christian or
     mentioned God or Jesus or a biblical passage.[4] Some argue that six million of the people killed during the
     Holocaust were killed because of their religion (Judaism) not their race, "strength," or any reason with an obvious
     link to the mechanism of Darwinian evolution. Hitler often used Christian beliefs like, "Jews killed Jesus," to justify
     his anti-Semitism.[5] Of course, all indications are that Hilter was raised a catholic but rejected his beliefs and
     certainly did not live them out.
     Research for Weikart's book was funded by the Discovery Institute, which has been very active in promoting
     intelligent design as an alternative to evolution in public school science classrooms, and whose "Wedge document"
     and former mission statement expand on the theme: "The cultural consequences of this triumph of materialism were
     devastating. Materialists denied the existence of objective standards binding on all cultures, claiming that
     environment dictates our moral beliefs." ... "materialism spawned a virulent strain of utopianism. Thinking they
     could engineer the perfect society through the application of scientific knowledge, materialist reformers advocated
     coercive government programs that falsely promised to create heaven on earth." Archived [6] June 8, 1997 at the
     Wayback Machine.
     The notion that humans share ancestors with other animals has also affected how some people view the relationship
     between humans and other species. Many proponents of animal rights hold that if animals and humans are of the
     same nature, then rights cannot be distinct to humans.
     Charles Darwin, in fact, considered "sympathy" to be one of the most important moral virtues — and that it was,
     indeed, a product of natural selection and a trait beneficial to social animals (including humans). Darwin further
     argued that the most "sympathetic" societies would consequently be the most "successful." He also stated that our
     sympathy should be extended to "all sentient beings":
           As man advances in civilization, and small tribes are united into larger communities, the simplest reason
           would tell each individual that he ought to extend his social instincts and sympathies to all the members
           of the same nation, though personally unknown to him. This point being once reached, there is only an
           artificial barrier to prevent his sympathies extending to the men of all nations and races. If, indeed, such
           men are separated from him by great differences in appearance or habits, experience unfortunately
           shows us how long it is, before we look at them as our fellow-creatures. ... This virtue, one of the
           noblest with which man is endowed, seems to arise incidentally from our sympathies becoming more
           tender and more widely diffused, until they are extended to all sentient beings. As soon as this virtue is
           honored and practiced by some few men, it spreads through instruction and example to the young, and
           eventually becomes incorporated in public opinion.
           - Charles Darwin; The Descent of Man, 1871
     This artificial selection is, however, part of natural selection: It is the action upon a set of species by the human
     species by way of the human species expending energy through evolved intelligence on its choice of selection. It is
     thus no less natural than, for example, a predator expending energy through evolved instinct on preferentially
     hunting a certain prey species. The presence of humans may change the dynamic, but in a perfectly natural way.
     Hence, it is part of the "cosmic process", that is natural laws, even though the "histological process" may remove
     many aspects of the "struggle for existence" that is a key part of the natural laws that apply to biology, from its
     preferred plant species by substituting human work for work done by the species itself.
           Not only is the state of nature hostile to the state of art of the garden; but the principle of the
           horticultural process, by which the latter is created and maintained, is antithetic to that of the cosmic
           process. The characteristic feature of the latter is the intense and unceasing competition of the struggle
           for existence. The characteristic of the former is the elimination of that struggle, by the removal of the
           conditions which give rise to it. The tendency of the cosmic process is to bring about the adjustment of
           the forms of plant life to the current conditions; the tendency of the horticultural process is the
           adjustment of the conditions to the needs of the forms of plant life which the gardener desires to raise.
     Nature uses unrestricted breeding to let hundreds compete for the natural resources that would only support one, and
     uses frost and drought to kill off the weak and unlucky, requiring not just strength, but "flexibility and good fortune."
     However, a gardener restricts multiplication, gives each plant sufficient space and nourishment, protects from frost
     and drought—and, in every other way, attempts to modify the conditions to benefit the forms that most nearly
     approach the result he desires. However, though the gardener's actions may have circumvented natural selection, he
     can still improve the species, should he find them wanting, through selective breeding. The struggle for existence is
     not actually required for improvement: only heritability, variation, and some form of selective pressure.
     Can we then apply this to humans? Let's see how far we can take the analogy with respect to colonization:
           Suppose a shipload of English colonists sent to form a settlement, in such a country as Tasmania was in the
           middle of the last century. On landing, they find themselves in the midst of a state of nature, widely different
           from that left behind them in everything but the most general physical conditions. The common plants, the
           common birds and quadrupeds, are as totally distinct as the men from anything to be seen on the side of the
           globe from which they come. The colonists proceed to put an end to this state of things over as large an area as
           they desire to occupy. They clear away the native vegetation, extirpate or drive out the animal population, so
           far as may be necessary, and take measures to defend themselves from the re-immigration of either. In their
           place, they introduce English grain and fruit trees; English dogs, sheep, cattle, horses; and English men; in
           fact, they set up a new Flora and Fauna and a new variety of mankind, within the old state of nature. Their
           farms and pastures represent a garden on a great scale, and themselves the gardeners who have to keep it up, in
           watchful antagonism to the old regime. Considered as a whole, the colony is a composite unit introduced into
           the old state of nature; and, thenceforward, a competitor in the struggle for existence, to conquer or be
           vanquished.
           Under the conditions supposed, there is no doubt of the result, if the work of the colonists be carried out
           energetically and with intelligent combination of all their forces. On the other hand, if they are slothful, stupid,
           and careless; or if they waste their energies in contests with one another, the chances are that the old state of
           nature will have the best of it. The native savage will destroy the immigrant civilized man; of the English
           animals and plants some will be extirpated by their indigenous rivals, others will pass into the feral state and
           themselves become components of the state of nature. In a few decades, all other traces of the settlement will
           have vanished. However, as yet we lack an organized gardener. Let us imagine an idealized one: an
           administrative authority of intelligence and foresight as much greater than men as men are to their livestock.
           The unwanted native species - men, animals, or plants - are all weeded out and destroyed. Those to replace
           them are chosen with a view to his ideal of the colony, just as a gardener tries to create through his selection
           his ideal garden. And, finally, to ensure that no struggle for existence between the colonists interferes with the
Social effect of evolutionary theory                                                                                              439
           struggle against nature, he provides them with sufficient food, housing, and so on. "With every step of this
           progress in civilization, the colonists would become more and more independent of the state of nature; more
           and more, their lives would be conditioned by a state of art. In order to attain his ends, the administrator would
           have to avail himself of the courage, industry, and co-operative intelligence of the settlers; and it is plain that
           the interest of the community would be best served by increasing the proportion of persons who possess such
           qualities, and diminishing that of persons devoid of them. In other words, by selection directed towards an
           ideal." However, though this might create a paradise where every aspect of nature works to support its
           colonists, problems arise: "as soon as the colonists began to multiply, the administrator would have to face the
           tendency to the reintroduction of the cosmic struggle into his artificial fabric, in consequence of the
           competition, not merely for the commodities, but for the means of existence. When the colony reached the
           limit of possible expansion, the surplus population must be disposed of somehow; or the fierce struggle for
           existence must recommence and destroy that peace, which is the fundamental condition of the maintenance of
           the state of art against the state of nature. If the administrator is guided purely by scientific considerations, he
           would work to restrict the population by removing "the hopelessly diseased, the infirm aged, the weak or
           deformed in body or in mind, and the excess of infants born," just as a "gardener pulls up defective and
           superfluous plants, or the breeder destroys undesirable cattle. Only the strong and the healthy, carefully
           matched, with a view to the progeny best adapted to the purposes of the administrator, would be permitted to
           perpetuate their kind." And so we have reached Social Darwinism. However, we do not have an idealized
           administrator:
           Of the more thoroughgoing of the multitudinous attempts to apply the principles of cosmic evolution, or
           what are supposed to be such, to social and political problems, which have appeared of late years, a
           considerable proportion appear to me to be based upon the notion that human society is competent to
           furnish, from its own resources, an administrator of the kind I have imagined. The pigeons, in short, are
           to be their own Sir John Sebright. A despotic government, whether individual or collective, is to be
           endowed with the preternatural intelligence, and with what, I am afraid, many will consider the
           preternatural ruthlessness, required for the purpose of carrying out the principle of improvement by
           selection, with the somewhat drastic thoroughness upon which the success of the method depends.
           Experience certainly does not justify us in limiting the ruthlessness of individual "saviors of society";
           and, on the well-known grounds of the aphorism which denies both body and soul to corporations, it
           seems probable (indeed the belief is not without support in history) that a collective despotism, a mob
           got to believe in its own divine right by demagogic missionaries, would be capable of more thorough
           work in this direction than any single tyrant, puffed up with the same illusion, has ever achieved. But
           intelligence is another affair. The fact that "saviors of society" take to that trade is evidence enough that
           they have none to spare. And such as they possess is generally sold to the capitalists of physical force on
           whose resources they depend. However, I doubt whether even the keenest judge of character, if he had
           before him a hundred boys and girls under fourteen, could pick out, with the least chance of success,
           those who should be kept, as certain to be serviceable members of the polity, and those who should be
           chloroformed, as equally sure to be stupid, idle, or vicious. The "points" of a good or of a bad citizen are
           really far harder to discern than those of a puppy or a short-horn calf; many do not show themselves
           before the practical difficulties of life stimulate manhood to full exertion. And by that time the mischief
           is done. The evil stock, if it be one, has had time to multiply, and selection is nullified.
           However, humans are not cattle, nor flowers: the organization of human society is kept together by ...bonds of
           such a singular character, that the attempt to perfect society after his fashion would run serious risk of
           loosening them. They do not even correspond to social insects such as bees: With bees, "The members of the
           society are each organically predestined to the performance of one particular class of functions only. If they
           were endowed with desires, each could desire to perform none but those offices for which its organization
           specially fits it; and which, in view of the good of the whole, it is proper it should do. Among mankind, on the
Social effect of evolutionary theory                                                                                               440
           contrary, there is no such predestination to a sharply defined place in the social organism. However much men
           may differ in the quality of their intellects, the intensity of their passions, and the delicacy of their sensations,
           it cannot be said that one is fitted by his organization to be an agricultural laborer and nothing else, and
           another to be a landowner and nothing else. Moreover, with all their enormous differences in natural
           endowment, men agree in one thing, and that is their innate desire to enjoy the pleasures and to escape the
           pains of life; and, in short, to do nothing but that which it pleases them to do, without the least reference to the
           welfare of the society into which they are born", checked only by sympathy, familial and social bonds, and
           fear of the judgment of ones fellow man. "Every forward step of social progress brings men into closer
           relations with their fellows, and increases the importance of the pleasures and pains derived from sympathy. In
           short, the creation of morality. Since morality is what keeps the desire for selfishness in check, it is necessary
           to the propagation of society, with one requirement: the punishment of wrongdoers being necessary for the
           continuation of society, self-restraint must not be taken so far that wrongdoers may act unrestrained: Without
           the protection of society against them, "the followers of the "golden rule" may indulge in hopes of heaven, but
           they must reckon with the certainty that other people will be masters of the earth."[7] Huxley sums up this
           section of his argument against Social Darwinism:
           I have further shown cause for the belief that direct selection, after the fashion of the horticulturist and
           the breeder, neither has played, nor can play, any important part in the evolution of society; apart from
           other reasons, because I do not see how such selection could be practiced without a serious weakening,
           it may be the destruction, of the bonds which hold society together. It strikes me that men who are
           accustomed to contemplate the active or passive extirpation of the weak, the unfortunate, and the
           superfluous; who justify that conduct on the ground that it has the sanction of the cosmic process, and is
           the only way of ensuring the progress of the race; who, if they are consistent, must rank medicine among
           the black arts and count the physician a mischievous preserver of the unfit; on whose matrimonial
           undertakings the principles of the stud have the chief influence; whose whole lives, therefore, are an
           education in the noble art of suppressing natural affection and sympathy, are not likely to have any large
           stock of these commodities left. But, without them, there is no conscience, nor any restraint on the
           conduct of men, except the calculation of self-interest, the balancing of certain present gratifications
           against doubtful future pains; and experience tells us how much that is worth. Every day, we see firm
           believers in the hell of the theologians commit acts by which, as they believe when cool, they risk
           eternal punishment; while they hold back from those which are opposed to the sympathies of their
           associates.
           Huxley finishes with a series of short, further evidences against Social Darwinism, including:
        • Historical evidences against: Consider the vast changes of society between the Tudor and the Victorian eras;
          however, human nature, as evidenced by their writing, remains the same. "In my belief, the innate qualities,
          physical, intellectual, and moral, of our nation have remained substantially the same for the last four or five
          centuries. If the struggle for existence has affected us to any serious extent (and I doubt it) it has been,
          indirectly, through our military and industrial wars with other nations."
        • Whether some qualities are virtues or vices depends on circumstance: "The benevolence and open-handed
          generosity which adorn a rich man, may make a pauper of a poor one; the energy and courage to which the
          successful soldier owes his rise, the cool and daring subtlety to which the great financier owes his fortune, may
          very easily, under unfavorable conditions, lead their possessors to the gallows, or to the hulks. Moreover, it is
          fairly probable that the children of a "failure" will receive from their other parent just that little modification of
          character which makes all the difference. I sometimes wonder whether people, who talk so freely about
          extirpating the unfit, ever dispassionately consider their own history. Surely, one must be very "fit," indeed,
          not to know of an occasion, or perhaps two, in one's life, when it would have been only too easy to qualify for
          a place among the "unfit.""
Social effect of evolutionary theory                                                                                                441
     In 1861 Karl Marx wrote to his friend Ferdinand Lassalle, "Darwin’s work is most important and suits my purpose in
     that it provides a basis in natural science for the historical class struggle. ... Despite all shortcomings, it is here that,
     for the first time, 'teleology' in natural science is not only dealt a mortal blow but its rational meaning is empirically
     explained."
     Most later Marxists agreed with this view, but some - particularly those in the early Soviet Union - believed that
     evolutionary theory conflicted with their economic and social ideals. As a result, they came to support Lamarckism
     instead - the idea that an organism can pass on characteristics that it acquired during its lifetime to its offspring. This
     led to the practice of Lysenkoism, which caused agricultural problems.
     In his book, Mutual Aid: A Factor of Evolution, anarcho-communist Peter Kropotkin argued that co-operation and
     mutual aid are as important in the evolution of the species as competition and mutual strife, if not more so.
     On the contemporary moderate left, some authors such as Peter Singer (in his book, A Darwinian Left) support
     Darwinism but reach different political and economic lessons than more conservative observers. Richard Dawkins'
     book, The Selfish Gene, has a chapter, "Nice guys finish first", which attempts to explain the role of altruism and
     cooperation in evolution and how social animals not only cannot survive without such traits, but how evolution will
     create them. Dawkins explains that when an animal sacrifices itself or uses its resources for the survival of other
     members of the same species, its genes, present on the other animals, survive. For example, if a mother dies to save
     three of its pups, one and a half copies (on average) of its genes will survive, because there is a 50% chance of a
     particular gene being present in its offspring. Dawkins also made a documentary of the same name.[11] According to
     the documentary, Dawkins added that chapter as a way of overcoming modern day misinterpretations of the concept
     of "survival of the fittest".
     See also
     •   Social evolutionism
     •   Neo-Creationism
     •   Garden of Eden
     •   Hypergamy
     •   Natural philosophy
     •   Freethought
     •   Age of the Earth
Social effect of evolutionary theory                                                                                                                          443
     References
     [1] Eugenics, etc (http:/ / www. gutenberg. org/ etext/ 2940)
     [2] The fallacious nature of [[reductio ad Hitlerum (http:/ / www. rationalrevolution. net/ articles/ darwin_nazism. htm)] arguments by
         anti-evolutionists.]
     [3] http:/ / www. darwintohitler. com/
     [4] Webpage containing 129 Mein Kampf quotes relating to his Christianity (http:/ / www. nobeliefs. com/ hitler. htm)
     [5] Religion and Hitler - a history (http:/ / www. nobeliefs. com/ hitlerchristian. htm)
     [6] http:/ / web. archive. org/ web/ 19970608130849/ http:/ / www. discovery. org/ crsc/ aboutcrsc. html
     [7] Huxley credits Hartley (Observations on Man (1749), vol. ii p. 281.) for not only having "laid the foundations but built up much of the
         superstructure of a true theory of the Evolution of the intellectual and moral faculties and for having realized that the creation of civilization
         will in itself create ethics, if not in an evolutionary context." as well as Adam Smith
     [8] http:/ / www. gutenberg. org/ etext/ 2940
     [9] http:/ / www. vatican. va/ holy_father/ pius_xii/ encyclicals/ documents/ hf_p-xii_enc_12081950_humani-generis_en. html
     [10] http:/ / www. ewtn. com/ library/ PAPALDOC/ JP961022. HTM
     [11] Nice guys finish first (http:/ / www. youtube. com/ watch?v=FzeCn02l_Rw)
     [12] "Western Civilization: Ideas, Politics, and Society" (http:/ / books. google. com/ books?id=kKGgoNo4un0C& pg=PA653& lpg=PA653&
         dq=social+ darwinism+ missionaries+ india& source=bl& ots=Y_LLqh3b93& sig=zQsURzU455ZsXRa-SOQJIzIzP8w& hl=en&
         ei=7TuhTLfJM8aNnQfF5bSiAw& sa=X& oi=book_result& ct=result& resnum=4& ved=0CCYQ6AEwAw#v=onepage& q=social darwinism
         missionaries india& f=false). Houghton Mifflin Harcourt Publishing Company. . Retrieved 2007–03–25. "The most extreme ideological
         expression of nationalism and imperialism was Social Darwinism. In the popular mind, the concepts of evolution justifed the exploitation of
         "lesser breeds without the law" by superior races. This language of raece and conflict, of superior and inferior people, had wide currency in the
         Western states. Social Darwinists vigourously advocated the acquistion of empires, saying that strong nations-by definition, those that were
         successful at expanding industry and empire-would survive and that others would not. To these elitists, all white men were more fit than
         nonwhites to prevail in the struggle for dominance. Even among Europeans, some nations were deemed more fit than others for the
         competition. Usually, Social Darwinists thought their own nation the best, an attitude that sparked their competitive enthusiasm. In the
         nineteenth centruy, in contrast to the seventeenth and eighteenth centuries, Europeans, except for missionaries, rarely adopted the customs or
         learned the languages of local people. They had little sense that other cultures and other people had merit or deserved respect. Many
         westerners believed that it was their duty as Christians to set an example and to educate others. Missionaries were the first to meet and learn
         about many peoples and were the first to develop writing for those without a written language. Christian missionaries were ardently opposed
         to slavery."
Article Sources and Contributors                                                                                                                                                                            444
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    Evolution as theory and fact  Source: http://en.wikipedia.org/w/index.php?oldid=392830825  Contributors: A little insignificant, AdjustShift, Aitias, Aks818guy, AkselGerner, Aksi great, Alan
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    Yasmine shenn, Yowuza, Zaharous, ZeWrestler, Zebspace, 362 anonymous edits
    Evolutionary history of life  Source: http://en.wikipedia.org/w/index.php?oldid=391449486  Contributors: 10outof10die, 5 albert square, Ac02111993, Ajstov, Alan Liefting, AlphaEta, Arbeo,
    Arthur Rubin, Artichoker, Artoannila, Aunt Entropy, Azcolvin429, BK4ME, Bdoom, Beardnomore, BellaKazza, BenFrantzDale, Benclewett, Chrisjj, Ciphergoth, Coffee2theorems,
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    Winterspan, Woohookitty, Woudloper, Yamakiri, Zappernapper, Zazaban, 81 anonymous edits
Article Sources and Contributors                                                                                                                                                                   446
    Timeline of evolution  Source: http://en.wikipedia.org/w/index.php?oldid=392950288  Contributors: 1 use, A8UDI, AS, Abdul Muhib, Abosaleh911, Addshore, Aidan Elliott-McCrea, Akamad,
    Akasbrian, Alan Liefting, Alansohn, Aldaron, Ancheta Wis, Andkore, Andrea105, Angela, Ankit jn, Anlace, Antandrus, ArcaneMachine, Arkuat, Armchair info guy, ArthurWeasley, Athaler,
    Atlant, Auriam, Autodidactyl, AxelBoldt, Ballista, BenSittler, Bergsten, BigBurkey, Blades95, Blehfu, Bobby D. Bryant, Bobo192, Bogdangiusca, Bolivian Unicyclist, Bongoo, Boreas74, Brion
    VIBBER, Brogers0436, Brunnock, Bryan Derksen, Burner0718, CJLL Wright, CSVR4, CSWarren, Cam, CanisRufus, CapitalR, CeoMaiy, CeoMaj, Cephal-odd, Cgingold, Chris.urs-o,
    Ciphergoth, Cmdrjameson, Coffee2theorems, CommonsDelinker, Conversion script, Courcelles, Coyoty, CreaoTnismKickR, Crum375, Cyan, Cyde, DanielCD, Dave souza, Dawn Bard,
    Dbabbitt, Dbachmann, Dcljr, Dendodge, DerHexer, Dethme0w, Diadem, Dichro, DirkvdM, Discospinster, Diza, Dodo bird, Dolphonia, Dr.Bastedo, Dragons flight, Dreish, Duncharris, Dweir,
    Dysepsion, Dysmorodrepanis, Ebyabe, Ec5618, Edward, Ejosse1, Eleassar777, Elfguy, Emil Teofanov, Emmanuelm, Enviroboy, Eric Forste, Eric Kvaalen, Evolauxia, FT2,
    Faithlessthewonderboy, Fang 23, Freakofnurture, Fred Bradstadt, Fred Hsu, Friginator, Frunobulax, Funhistory, Fuzheado, GSlicer, Gabbe, Gadfium, Gaius Cornelius, GameKeeper, Garion96,
    Gary Cziko, Gdr, Gene Nygaard, George Hernandez, Gilliam, Goalie1002002, GoingBatty, Grim23, HGB, Hadal, Hairhorn, Headbomb, Heliogabalus1, Henrygb, Hephaestos,
    Hereforhomework2, Heron, Hibernian, Horned1, Hugin&Munin, IanCheesman, Icairns, Imc, Immunize, IronGargoyle, JForget, JH-man, JakeVortex, Jaknouse, Jamesdowallen, Jatkins, Jayc,
    Jcmo, JeffW, Jmc112693, JoeshB, John, John Abbe, John D. Croft, John Vandenberg, John37309, JohnCD, Johnuniq, Jon186, JorisvS, Jrockley, KWMec, Kaimiddleton, Kapow, Katalaveno,
    Katharina Simon, Katieh5584, Kekm23, Keraunos, Kimiko, KimvdLinde, KirbyManiac, Knowledge Seeker, KnowledgeOfSelf, KnowledgeRequire, Koavf, Koebie, Kompar, Krclathrate, Kuru,
    KyNephi, Legoland, Leptictidium, Lexor, Lisatwo, Llehctimj, Lord Patrick, LordAmeth, Lordaraq, Lupo, M Alan Kazlev, MAXimum Xtreme, MPF, Magnus Manske, Mainefan1, Marek69,
    Markjoseph125, Marknesbitt, Marshman, Marskell, Martin-vogel, Mateuszica, Matterfoot, Matthew Yeager, Maurreen, Maximus Rex, Meggar, Mencial, Merovingian, Michael Johnson,
    Mikenorton, Mindmatrix, Momabdishu, Moondyne, Morning277, Mr Chuckles, Mrfunnyd, Mrh30, Mtg400, Nakon, NameIsRon, Narayanese, Natalie Erin, NatureA16, Ncmvocalist, Nedlum,
    Neutrality, Neverquick, Nivix, Null Nihils, Oblivious, Odycee, Ollie senter, Onco p53, One-dimensional Tangent, OpenToppedBus, Orangemarlin, Pamdhiga, Parsa, Paul from Michigan,
    Pennywisdom2099, Peruvianllama, Peter b, Petri Krohn, Pgk, Philip Stevens, Philip Trueman, Philippe, Philmcgrove, Plumbago, Pollinator, Quiddity, RJHall, RK, RainbowOfLight,
    Raymondwinn, Rdsmith4, RedWolf, Rednblu, Rich Farmbrough, Rick Norwood, Rling, Robert Stevens, Roentgenium111, Ronhjones, Rossami, RoundSparrow, Royboycrashfan, Rune.welsh,
    SMC, SMesser, Sabik, Saikiri, Salleman, Samak47, Samiam1955, SchfiftyThree, Shadowjams, SheffieldSteel, Shrimp wong, Silence, Simnicol, Sin-man, Slarre, Sleeppointer, Smallweed,
    Smith609, Sonett72, Soulkeeper, Stefan, Stephan Schulz, Streona, StuffOfInterest, Sverdrup, Svetovid, Tannin, Teapotgeorge, The Thing That Should Not Be, Theultimatum, Tide rolls, Timwi,
    Tomruen, Tonyfaull, Transisto, Tuganax, Tulostoma, TutterMouse, Twanderson, Tycho, Uncle Milty, Urhixidur, UtherSRG, VBGFscJUn3, Valich, Vcrs, Veda784, Vera Cruz, Voyagerfan5761,
    Vsmith, Waggers, William Avery, William M. Connolley, Williamb, Wilson44691, Workster, Xagent86, Yamamoto Ichiro, Zoe, Zundark, 838 anonymous edits
    History of evolutionary thought  Source: http://en.wikipedia.org/w/index.php?oldid=391895866  Contributors: AS, Aderksen, Adrian 1111, Afernand74, Alansohn, Alba, Albie34423, Allen3,
    Allventon, AlphaEta, Andycjp, Anlace, AnonMoos, Arch dude, Armchair info guy, Art LaPella, Artichoker, Astatine-210, Athenean, Aunt Entropy, BD2412, Barnaby dawson, Barticus88,
    BenB4, Bender235, Bendzh, Brighterorange, CCooke, Charles Matthews, CharlesGillingham, Circeus, Cmdrjameson, CommonsDelinker, Cygnis insignis, D-Notice, Dabomb87, Dave souza,
    Descendall, Diedo1982, Dojarca, Doubting thomas, DrKiernan, Drumbeatsofeden, Duncharris, Eaglizard, Ealdgyth, Eastlaw, EchetusXe, Edital, Egmontaz, Emw, Enrique Cordero, Epbr123,
    Ettrig, Evertype, Extremophile, Fang 23, Faro0485, Fastfission, Filll, Flexijane, Francis Hoar, Fred Bradstadt, Fvasconcellos, G716, GN, GRBerry, GSlicer, Galoubet, Gdr, Gil Gamesh,
    Gimmetrow, GoonerDP, Gregbard, Grimhelm, Guest9999, H.sanat, Halaqah, HarryHenryGebel, Harryboyles, Headbomb, Heron, Hmains, Igiffin, Isolation booth, J. Spencer, J.delanoy, Jagged
    85, Jeargle, Joe hill, Joel7687, Johnor, Johnuniq, Josh Grosse, JoshuaZ, Jrmccall, Juliancolton, Kaldari, Knight1993, Koavf, Kosmocentric, Kozuch, Lacatosias, Lauranrg, Leandrod,
    Leonardorejorge, Leptictidium, Lexor, Lilac Soul, Ling.Nut, LittleHow, Logicus, LonelyMarble, LovesMacs, Macdonald-ross, Malick78, Marcus MacGregor, Martial75, Mattisse, MaxSem,
    MayerG, Michael Devore, Nihiltres, NuclearWarfare, Oldag07, Opabinia regalis, Orangemarlin, PDH, Pbarnes, PhDP, Piledhigheranddeeper, Pince Nez, Pingveno, Piotrus, Plumbago, Portillo,
    Qertis, RJHall, Ragesoss, Random account 47, Redtigerxyz, RevRagnarok, Rich Farmbrough, Richard001, Rjwilmsi, Rlinfinity, Robert1947, RobertG, Ruffmonster, Rusty Cashman, Ryan.vilbig,
    Rysz, Safay, Samsara, SandyGeorgia, Scythia, Seegoon, Shyamal, Sillygrin, Sjdunn9, Skirby17, Spammer34567, Spotty11222, SpuriousQ, Srnec, StN, Stappsclass, Steinsky, StudyAndBeWise,
    Syncategoremata, Syzygos, Szquirrel, THEN WHO WAS PHONE?, Taffboyz, TeleComNasSprVen, Tevildo, Thatguyflint, TimVickers, Tiptoety, Tmol42, Trialsanderrors, Tuxedo junction, User
    A1, Vanished user, Vero.Verite, Vmaldia, Vsmith, WAS 4.250, Wavelength, Wayland, WolfmanSF, Wordwright, Writtenright, Xuehxolotl, Z10x, Zappernapper, Zef, 124 anonymous edits
    Lamarckism  Source: http://en.wikipedia.org/w/index.php?oldid=392998003  Contributors: ***Ria777, A little insignificant, Achmed123456789, Aitias, Alansohn, Aliekens, Aljullu, Ams80,
    Anadverb, Androstachys, Anna Lincoln, Ano-User, Anonywiki, Ashmoo, Astor, AxelBoldt, Barticus88, Bender235, Berton, Binadot, Black Kite, Bomac, Cesare Barbone, Chocolateboy, Chris
    the speller, Chris55, Cinik, Colonies Chris, Coricus, Csernica, Cyberix, DARTH SIDIOUS 2, Damneinstien, Daniel Brockman, Dave souza, Discospinster, Dissembly, Dreaded Walrus,
    Dumarest, Duncharris, Dyed Purple, Ethan Mitchell, Extremophile, Fastfission, Fences and windows, Fred Hsu, GCarty, Gilliam, Gogo Dodo, Gomm, GrahamP, Gregbard, Gwern, HaeB,
    Havermayer, Headbomb, Huckleboy, Human.v2.0, Huysman, Hyacinth, Icairns, Isnow, Jack Merridew, Jsethedwards, Jsonitsac, Kansan, Kvn8907, LeonardM, LilHelpa, Linas, Macdonald-ross,
    Madeleine Price Ball, Magda wojtyra, Magnani, Mangostar, Mark Carden, Marshman, Memestream, Mercury, Millosh, Mindmatrix, Mr. Wheely Guy, Myles325a, Nascar1996, Nemo bis, Ngio,
    Nneonneo, Omegatron, Onnerfors, OrangUtanUK, Orphan Wiki, PDH, Pee Tern, Pengo, Peripitus, PeterisP, Philip Trueman, Pwner594, Quiddity, Quuxplusone, R:128.40.76.3, Rabidfoxes,
    Rachel1, Ragesoss, Redheylin, Reedy, Rich Farmbrough, Richard Arthur Norton (1958- ), Richard001, RichardKennaway, Rjwilmsi, Robert K S, Robofish, Rusty Cashman, Samsara,
    Sanfranman59, Shanel, Silverxxx, SlimVirgin, Smeggysmeg, SmilesALot, Steinsky, Surv1v4l1st, Theprivateer83, Thibbs, Timwi, Tinz, Trueblood, Tstrobaugh, Tuckerj1976, Tuxedo junction,
    Twang, User99, Vremya, WAS 4.250, WLU, Wiki Raja, Wimt, Xabian40409, Yuh66h, Zamphuor, Zoicon5, 213 anonymous edits
    Saltationism  Source: http://en.wikipedia.org/w/index.php?oldid=382880304  Contributors: Adzyaye, Bcasterline, Digitata, Dysmorodrepanis, Everyking, Extremophile, Garygromet, Graham87,
    Greeneto, Hadrian89, Havermayer, HumbleGod, Johnuniq, Lauranrg, Leonardorejorge, Leptictidium, Mchavez, Merzul, Mgerb, Mitteldorf, Mmcannis, Rusty Cashman, Tbjablin, Trilobitealive,
    Unimaginative Username, Woohookitty, 15 anonymous edits
    Orthogenesis  Source: http://en.wikipedia.org/w/index.php?oldid=385164271  Contributors: 3tcetera, Alba, Ano-User, Armchair info guy, Bcasterline, Bensaccount, Brichard37, Ceramufary,
    Dgri, Entropix, Eras-mus, Ewlyahoocom, Extremophile, FanCollector, Filll, Fred Hsu, GoEThe, Headbomb, Infophile, J0m1eisler, Jacob1207, Johnuniq, Lauranrg, Lexor, MSchnitzler2000,
    Manning Bartlett, Meco, Memestream, Michael Hardy, Nosson77, Nwbeeson, Opie, Rich Farmbrough, Rusty Cashman, Sam Hocevar, Sietse Snel, Smaines, StN, Steinsky, Stephen Morley,
    Superborsuk, TeleComNasSprVen, Vanished User 0001, Vclaw, Viriditas, Zafiroblue05, 22 anonymous edits
    On the Origin of Species  Source: http://en.wikipedia.org/w/index.php?oldid=392624508  Contributors: 1or2, 213.253.39.xxx, A.Kurtz, AC+79 3888, Aa77zz, Abecedare, Acc3ss, Adam Zivner,
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    Armchair info guy, Art LaPella, Artichoker, Ashmoo, Aunt Entropy, Auréola, Axl, Aziz1005, BD2412, Baegis, Bahudhara, Ballista, Bania.kenny, Barto, BaseballDetective, Batmanand,
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    Cohesion, Commander Keane, ConfuciusOrnis, Conversion script, Craftyminion, Csmwiki, Curps, DJ Clayworth, DLH, DSatz, Dabomb87, DancingPhilosopher, Dannyno, DarwinianMan, Dave
    L, Dave souza, David Cheater, David Gerard, DavidCBeck, Dawn Bard, DeLarge, Dekimasu, Deus Ex, Diego pmc, Discospinster, Dolphin51, DoubleBlue, Doulos Christos, Download,
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    Rajender Sethi, Raul654, Rds865, Rennie84, Reportsporusskie, Reywas92, Riapress, Rich Farmbrough, Richard001, Richerman, Rlevse, RobertG, Ronhjones, RoyBoy, Rreagan007, Rsrikanth05,
    Rst20xx, RussGrim, Rusty Cashman, RyanCross, RyanGerbil10, S h i v a (Visnu), SU Linguist, Sala427, Samuelscat, Sandahl, Sander Säde, Satori Son, SchnitzelMannGreek, Sean.hoyland,
    Selkem, Shadowjams, Shirik, Shoujun, Simon12, SirGrant, Skater, Skizzik, Slrubenstein, Snalwibma, Snigbrook, SnowFire, Snowolf, Someone else, Sonicblade128, Soulkeeper, Specter01010,
    Spencer, Stbalbach, Steinsky, Stemonitis, Stiepan Pietrov, Stone, StudyAndBeWise, Supertask, Suruena, SusanLesch, Suslindisambiguator, Svetovid, Sweetness46, Taco325i, Taffboyz,
    Talkstosocks, Tbhotch, Tbjablin, TechBear, Technopat, Template namespace initialisation script, Tex, That Guy, From That Show!, The Anome, The C of E, The Thing That Should Not Be, The
    wub, TheAlphaWolf, Theresa knott, Thesoxlost, Thoroughbred Phoenix, Thunderfun, Tide rolls, Tim Q. Wells, Tim!, TimVickers, TimothyRias, Timwi, Tmol42, Tomisti, Tony1, Tony360X,
    Tpbradbury, Trevor Andersen, Ttiotsw, Tutmosis, Twas Now, Twinxor, TypoDotOrg, VacuousPoet, Vanished User 0001, Vanished user 03, Varlaam, Vasiľ, Vatsan34, Vegetator, Versus22,
    VetteDude, Vicenarian, Vintermann, Vitovino, VolatileChemical, Voyevoda, Vrenator, Vsmith, Wai Wai, Wereon, White Shadows, Wikid77, Wikididact, William Avery, WojPob, WolfmanSF,
    Xaliqen, Xiner, Xmahahdu, Yerpo, Yvori, Zachlipton, Александър, 609 anonymous edits
    Darwinism  Source: http://en.wikipedia.org/w/index.php?oldid=391503292  Contributors: 16@r, A Raider Like Indiana, Abbenm, Akamad, Aksi great, Alansohn, Alexei Kouprianov,
    Alexrio1013, Alienus, Allinthebrain, AlphaEta, Andres, Andrewlp1991, Antandrus, Ante Aikio, Anton Kos, Antrophica, Anwegmann, Arbeiter, Arde Madrid, Aristotle2600, Armchair info guy,
Article Sources and Contributors                                                                                                                                                                        447
    Audacity, Aunt Entropy, AxiomOfFaith, BG, Backmask, Bebo liebe, BenAveling, Bless sins, Bloodofox, Blotchhead, Blove maple, Bobo192, Bonerface, Bongwarrior, Boris Živ, Bowlhover,
    Brian0918, Brianrein, Briggsalex, Bryan Derksen, Builder w, Calebrw, CapitalR, Capricorn42, Carbuncle, CardinalDan, Carrionluggage, Cenarium, Chad625, Chase me ladies, I'm the Cavalry,
    Chowbok, Chris5858, ChrisDuben, Coelacan, ConfuciusOrnis, Conversion script, Cornellrockey, Cornopeanus, Cuaxdon, Cureden, Cyde, CzarB, DLH, Daecon, DannyMuse, Daughter of Mímir,
    Dave souza, DavidL (usurped), Davril2020, Dawn Bard, Dbiel, Dina, Discospinster, DoktorDec, DoubleBlue, Dr. B. R. Lang, Duncharris, Dysepsion, Earl Andrew, Ec5618, Echoray, Ed Poor,
    Epbr123, Equendil, Erikhansson1, Escape Orbit, Ettrig, Excirial, Falcon8765, Fastfission, Fationia, Fbartolom, FeloniousMonk, Fences and windows, Filll, Finngall, FisherQueen, ForestDim,
    Fubar Obfusco, Gaius Cornelius, Gamesta3, Garik, Gary King, Gimme danger, Graham87, Gtrmp, Guettarda, HKT, Hadrian89, Harland1, Headbomb, Heironymous Rowe, Hello32020,
    Henrionline, Hertz1888, Hibernian, Hrafn, Human.v2.0, Husond, Hydrogen Iodide, Iridescent, Irish Souffle, Irishguy, Ivankb, J Di, J heisenberg, J.delanoy, JWSchmidt, JaGa, Jefffire, Jesus954,
    Jockcampbell, Joe Decker, Johan1298, John Lynch, John Quiggin, Johnuniq, Jojhutton, Jon Ascton, Jusdafax, Kbp001, Keesiewonder, KillerChihuahua, Kilmer-san, Kim Bruning, KimvdLinde,
    King of Hearts, KittyKAY4, Knowledge Seeker, Ksyrie, Kukini, Kzollman, Lee Daniel Crocker, Liftarn, LilHelpa, Lopoh, Lordandmaker, Loren.wilton, Luna Santin, MER-C, Madigan531,
    Malten, MaseratiFerarri, Massimo74, Matthew Yeager, Mattisse, Meestaplu, Mensfortis, Michael Johnson, Mitch Ames, Mkamensek, Mladifilozof, Mpvdm, Mr Stephen, Mrmariokartguy,
    Mswake, Murtasa, Myahoo, Mygerardromance, Mynameisvirgil, N5iln, NawlinWiki, Neo-Jay, Neutrality, Neverquick, Nick, Nuttycoconut, Ohconfucius, Old Moonraker, Olianov,
    Omicronpersei8, Onevalefan, Opabinia regalis, Ottre, PaulRuttenfromBrunei, Persian Poet Gal, Petiatil, Phantomsteve, Philosophistry, Poeloq, Portillo, Professer elling, Proyash, RA0808,
    Radiocar, Rcrosby, Reconsider the static, Red Act, Rednblu, Rich Farmbrough, Richard David Ramsey, Richard001, Rjensen, Rjwilmsi, Rob Hooft, Roland Deschain, Rotational, RoyBoy,
    SWAdair, SallyForth123, Salvio giuliano, Sam Medany, Sango123, Savana-ona-rolla, SchnitzelMannGreek, Senortypant, Shadikka, Shadowjams, Shamrogorr, Shoemaker's Holiday, Silly rabbit,
    Silverfish, Skarl the Drummer, Smiggle16, Smoove Z, SmurfLover1982, Snalwibma, Snarius, Snowolf, Spitfire, Stirling Newberry, StudyAndBeWise, T-rex, Tautologist, TedE, Teh roflmaoer,
    Tempodivalse, Terence, Tgearty, That0neguy01, The Transhumanist, TheDJ, ThePointblank, Thelivingbrian, Thunderfrog07, Tiddly Tom, Tide rolls, Tim Long, TimVickers, TimothyHorrigan,
    Tom harrison, Tommy2010, TonyBallioni, Ttiotsw, VIDEOGAMES, VVtam, ValenShephard, Vanished User 0001, Vanished user, Vicenarian, VityUvieu, Vivian.alsayegh, Voyagerfan5761,
    Vsmith, WLU, Wayne Olajuwon, Wetman, Wiki alf, WikiLaurent, Xaosflux, Yamamoto Ichiro, Yankeefan292, Yerpo, Zeamays, 437 anonymous edits
    The Genetical Theory of Natural Selection  Source: http://en.wikipedia.org/w/index.php?oldid=347178552  Contributors: Adoniscik, Ambystoma, Angr, Betacommand, Bobo192, Brockert,
    Duncharris, Gloriamarie, Headbomb, I am not a dog, Jefffire, Jengod, Jhbadger, Lexor, Mark Richards, Maximus Rex, Minhtung91, RadicalBender, Richard001, TedE, The wub, Timwi, 18
    anonymous edits
    Neo-Darwinism  Source: http://en.wikipedia.org/w/index.php?oldid=366488537  Contributors: Alan Liefting, Andrew c, Armchair info guy, Aunt Entropy, Barak Sh, Benhocking, Bueller 007,
    ConfuciusOrnis, Dave souza, Duncharris, Ed Poor, Gnomon Kelemen, Headbomb, Hrafn, John Vandenberg, JoshuaZ, Jweiss11, K, Karan.m.khot, Lexor, Lindosland, Livingrm, MartinSpamer,
    Mastad, Memestream, Odd nature, Oldekop, Orangemarlin, Rusty Cashman, Samspeedy1985, Senortypant, SimonD, Snalwibma, Tannin, TimVickers, Tuxedo junction, Vanished user, Vasiľ,
    Woohookitty, 22 anonymous edits
    Modern evolutionary synthesis  Source: http://en.wikipedia.org/w/index.php?oldid=392613323  Contributors: 168..., 2D, Aecis, Akendall, AlphaEta, Andre Engels, Andres, Ano-User,
    Anthony, Arminius, Artichoker, Azcolvin429, Bcasterline, Belovedfreak, Benjaminmyklebust, Bhawthorne, Brighterorange, Canada Jack, ConfuciusOrnis, Dave souza, David Shear, Dawn Bard,
    Dbachmann, Deb, Delirium, Dhochron, Djlayton4, DonSiano, DrThompson, Duncharris, Edgar181, El C, Erik Corry, Extremophile, Fabricebaro, FaerieInGrey, Fastfission, Filll, Fiskeharrison,
    Fracker, Fratrep, Fred.e, GSlicer, Gabbe, Gaius Cornelius, Glenmin, Gloriamarie, Gnomon Kelemen, Gog, Gregbard, Ground Zero, Headbomb, Hibernian, Horselover Frost, Hrafn, I am not a
    dog, Inwit, Iridescent, Isaac Dupree, J'raxis, J. Spencer, J.delanoy, Jarhead483, Jason Potter, JmCor, Johnuniq, Join Tile, Joriki, Jstanley01, Justforasecond, Karol Langner, Keno,
    KillerChihuahua, Kleuske, Kripkenstein, Lexor, Lightmouse, Lijealso, Livingrm, Lotje, Lowellian, MTDinoHunter, Macdonald-ross, Margareta, MathEconMajor, MayerG, Mchavez,
    Memestream, Michael Hardy, Mietchen, Mild Bill Hiccup, Mindmatrix, Mlewan, Movses, N328KF, NamfFohyr, Nectarflowed, Nicwright, Noisy, Northfox, Obli, Odd nature, Orangemarlin,
    Oxymoron83, PDH, Pdcook, Peteraandrews, Pgold, Phantomsteve, Pjvpjv, Psbsub, Pyschedelicfunk, R Lowry, RScavetta, Ragesoss, Resmar48, Rhetth, Rjwilmsi, Robert Stevens, RoyBoy,
    Rumping, Rusty Cashman, Samsara, Senortypant, Sghussey, Shawnc, Shyamal, Silicon-28, Slrubenstein, Smartse, Snalwibma, Spa toss, Spizzer2, Steinsky, Susurrus, TedE, Template namespace
    initialisation script, TestPilot, The Merciful, The morgawr, Tiddly Tom, TimVickers, Tstrobaugh, Tuxedo junction, Twirligig, Ucucha, Vanished User 0001, VoteFair, Vsmith, WAS 4.250,
    Wafulz, Waldow, Warofdreams, Woudloper, Writtenonsand, Z10x, 122 anonymous edits
    Heredity  Source: http://en.wikipedia.org/w/index.php?oldid=393073936  Contributors: 2D, 5 albert square, Acather96, Acroterion, Afaz, Agathman, Akerans, Alansohn, Alec - U.K.,
    Alex.muller, Alexpavlov12345, Alfalfa9, Amwyll Rwden, AnakngAraw, Andersrask1977, Andonic, Andrewpmk, Andy Marchbanks, Antandrus, Apeloverage, Arkarind, Azcolvin429, Beboots,
    BirgitteSB, Bob f it, Bobianite, Bobo192, Bongwarrior, Borgx, Brian0918, Burntsauce, Calabraxthis, Camw, Can't sleep, clown will eat me, CaptainAmerica, Casull, ChXu, Charles Matthews,
    Connormah, Conversion script, Courcelles, D, DARTH SIDIOUS 2, DGtal, Dan Polansky, Dave souza, DavidWBrooks, DeadEyeArrow, Debresser, Decltype, Deli nk, DerHexer, Derek
    Andrews, Des, DharmaDreamer, Dingar, Discospinster, Doc Tropics, Doczilla, Dominus, Dripping Flame, Duncharris, E-citizen, Earlypsychosis, Emperorbma, Emw, Evolutionsucks, Fastfission,
    Fernando S. Aldado, Filemon, Fr78, Frap, Freedomlinux, Gaius Cornelius, Giftlite, GoEThe, Gogo Dodo, Granf, Grantus4504, GregAsche, Grim23, Ground Zero, Gtrmp, Gzhanstong, Gökhan,
    Haham hanuka, Hairy Dude, Happysailor, Headbomb, Heron, Hkhenson, Hmains, Hqb, Hult041956, Hut 8.5, I do not exist, IRP, Iamsnorlax, Igiffin, Ilyushka88, Insanity Incarnate, Ixfd64,
    J.delanoy, JForget, JLaTondre, JRother, Jackie moons, Jagged 85, James089, JamesHilt62, JavaTenor, Jaxl, Jebus989, Jedi6, Jfdwolff, Jimmy Pitt, Jni, JoanneB, JoaoRicardo, Job tungol,
    JoeSmack, Jonverve, Joxernolan, Jredmond, Jrockley, Kaiba, Keilana, Kevinmon, Killiondude, King of Hearts, Kukini, Kzollman, LDHan, LFaraone, La goutte de pluie, Ldavies, LedgendGamer,
    Lexor, LittleOldMe, Lunakeet, Madhero88, Magister Mathematicae, Mailer diablo, Malo, Manco Capac, MarcoTolo, Marknen, Marquez, Masterofsuspense, Maurog, Mav, Mbc362, Melaen,
    Menchi, Mengela, Minimac, Minisimon, Missbay67, Mrl, Mwills011, Myanw, Nakon, Nectarflowed, NellieBly, Nerdygeek101, NewEnglandYankee, Nibuod, Nicolae Coman, Nivix, Nunh-huh,
    O, Obey, Ocsadanielsw@hotmail.com, OhanaUnited, PSWG1920, Patrick0Moran, Philip Trueman, Pinethicket, PinkPanthress, Qertis, Qurat-ul-ain Basit, RHaworth, Radagast83, RandomP,
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    the Internet, Sommers, Springnuts, Squirt2711, Stevenmitchell, Superborsuk, Syncategoremata, Synchronism, TableManners, Tail, Tameeria, TedE, Thatguyflint, The Anome, The Man in
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    Tyrenius, Uncle Dick, Uzzo2, Vcolin, Vegetator, Vietbio, Vimescarrot, Vipinhari, Viriditas, Vsmith, WTGDMan1986, Wavelength, Wikieditor06, Will Beback, William Avery, Woohookitty,
    Yamamoto Ichiro, YanaGator, Yelyos, Yuanchosaan, Zhou Yu, Александър, 477 anonymous edits
    Fitness  Source: http://en.wikipedia.org/w/index.php?oldid=390608842  Contributors: Abrahami, Andrea105, Apparition11, Bheest, Bobblehead, Corvi42, Dj Capricorn, Draicone, Duncharris,
    EPM, Edward Ockham, Encyclopedia77, Felinasmith, Flarity, ForestDim, Frenkmelk, Froonyhoob, Furor1, GraemeL, GuyChaham, HTBrooks, Hazzeryoda, Hu12, I am not a dog, Jdvelasc,
    Joannamasel, Johnuniq, KimvdLinde, Kjells, Kzollman, Levineps, Lexor, Melanie or mely, Nakon, Nikai, Nuttycoconut, Opabinia regalis, Pariah, Peripitus, Richard.decal, Richard001, Rumping,
    Sbeath, Shadowjams, ShelfSkewed, Shiritai, Shot-caller8, Sslevine, Stephenb, Syp, TangentCube, Techman224, TehBrandon, Tide rolls, TimVickers, Timo Honkasalo, Txomin, Uriobolski,
    Vachung 82, Vsmith, WAS 4.250, WadeSimMiser, Waldow, Wik, Wimt, Wlodzimierz, XxCrazySnoopxX, YouWillBeAssimilated, 94 anonymous edits
    Common descent  Source: http://en.wikipedia.org/w/index.php?oldid=384873781  Contributors: 168..., 84user, Agathman, Alan Liefting, Alexs, Andycjp, Archaeopteryx, Armchair info guy,
    Aunt Entropy, Azcolvin429, Bcasterline, Bender235, Bibliophile20, Bubbamagic87, Burris, CanisRufus, Cat Whisperer, Categorer, Catgut, Cement123, Ceyockey, Cheddarbob23, Christian
    Skeptic, Conversion script, Cribbswh, Curtis Clark, Cyde, DLH, DRosenbach, Dawn Bard, Deeplogic, Deglr6328, Demfranchize, Dfinch, Digitwoman, Dionyseus, Doc Tropics, Donarreiskoffer,
    Dtheobald, Ec5618, Ed Poor, Edward, Ewe nik, FeloniousMonk, Filll, Finell, Firsfron, ForestDim, Frank101, GSlicer, Gabbe, Glen, Guettarda, Haggiaomega, Harburg, Headbomb, Henrygb,
    Horselover Frost, Infraredeclipse, J.delanoy, JH-man, JHunterJ, Jarhed, Jebus989, Jim62sch, Jogers, Johnuniq, Join Tile, Jondw, Jorgesalgueiro, JoshuaZ, Keegscee, Kjkolb, Lexor, Littlealien182,
    Livingrm, Logicus, Martial75, MartinHarper, Mausy5043, Mccajor, Menchi, Michael Johnson, Mr. Wheely Guy, Naddy, Nihiltres, Northfox, Nwbeeson, Octavian history, Opie, Orangemarlin,
    PDH, Palnatoke, Pavel Vozenilek, Pbarnes, Peak, Persian Poet Gal, Petri Krohn, Pmanderson, PoolPartay, Poor Yorick, Princeofexcess, RHaworth, Rafikgl, Randwicked, Rgamble, Rich
    Farmbrough, Richard001, Robert Stevens, Rogue-pilot, Sam Hocevar, Samsara, SheffieldSteel, SpuriousQ, Stiepan Pietrov, Strictscrutiny, Sven Heinicke, Thomas Arelatensis, TimShell, TomS
    TDotO, Tomtheman5, Traxs7, Ungtss, Valich, Vanished user, Vsmith, WAS 4.250, Webridge, Winterschlaefer, Zappernapper, 104 anonymous edits
    Evidence of common descent  Source: http://en.wikipedia.org/w/index.php?oldid=392814660  Contributors: 10outof10die, 1exec1, Aalexandros, Adrian J. Hunter, Agathman, Aianrnoens,
    Alienus, Allstarecho, Altenmann, AmericanKido, Anarkisto, Andonic, Andrewpmk, Andreybigb, AnonMoos, Antandrus, Antiuser, Apokryltaros, Aquishix, AresAndEnyo, Armchair info guy,
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    Beland, BenB4, Bkkbrad, Blacklake, BlaiseFEgan, BlueGoose, BlytheG, BrainUser, Brightmoon, Can't sleep, clown will eat me, CanisRufus, Carradee, Cavrdg, Cerealkiller13, Christian Skeptic,
    ClamDip, Condem, Crystallina, DO11.10, DRosenbach, DabMachine, DancingPenguin, Daniel J. Leivick, Daniel5127, Danielrcote, Darrenhusted, Dave souza, David Gerard, Davril2020, Dawn
    Bard, Dekimasu, Dfarrar, DiLLuS, Diannaa, Digitwoman, Digwuren, Dinofan135, Dionyseus, Dougweller, Drbug, Dreadstar, Dsbrod, Dude112233, Duncharris, Dziewa, Eall Ân Ûle,
    EarthRise33, Ec5618, Ed Poor, EdJohnston, Eeekster, Eequor, ElijahOmega, Enviroboy, ErikHaugen, Ezra Wax, Fama Clamosa, FeloniousMonk, Fences and windows, Filll, Firsfron, Fubar
    Obfusco, G4rfunkel, GSlicer, Gaius Cornelius, GeneralBelly, Geoff, Gimmetrow, GlassFET, Godisnotmocked, Gombo, Grafen, Graft, GreatWhiteNortherner, Gregbard, GromXXVII, Guettarda,
    Gurch, GusChiggins21, Haemo, Harley peters, Headbomb, Herbee, Hesperian, HiEv, Hmains, Hrafn, Hugin&Munin, Hut 8.5, Ian.thomson, Icairns, Imjustmatthew, Io Katai, J.delanoy, JFFCakes,
    JH-man, JaGa, Jefffire, JeremyA, John D. Croft, Johnuniq, Jon186, Jooler, JoshuaZ, Jpbowen, Julianonions, Jusdafax, JustSomeKid, K, Kafziel, Kdbuffalo, Kilonum, Kingdon, Kjkolb,
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    Phylogenetics  Source: http://en.wikipedia.org/w/index.php?oldid=390075235  Contributors: AS, Agathman, Akriasas, Amaltheus, Andres, Andycjp, Aranae, BD2412, Beland, Benbest, Bendzh,
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    Cladistics  Source: http://en.wikipedia.org/w/index.php?oldid=392634694  Contributors: 10outof10die, 130.94.122.xxx, 172.153.96.xxx, 2004-12-29T22:45Z, 9eyedeel, ABF, APH, Adrian,
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Cladogram Source: http://en.wikipedia.org/w/index.php?oldid=387836487 Contributors: ArkinAardvark, Damian Yerrick, Earrnz, Koavf, Shanes, SilkTork, Snek01, 8 anonymous edits
    Molecular phylogenetics  Source: http://en.wikipedia.org/w/index.php?oldid=377909149  Contributors: 168..., Aranae, Biophys, Brya, Carlosp420, Dysmorodrepanis, EdJohnston, Eugene van
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    User 1004, 27 anonymous edits
    Evolutionary developmental biology  Source: http://en.wikipedia.org/w/index.php?oldid=391298611  Contributors: 10outof10die, APH, Adam Retchless, Adoniscik, AdultSwim, Alamowit,
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    User 0001, Vary, Wdanwatts, Wikipeditor, William R. Buckley, Woohookitty, Wotnow, Zundark, 59 anonymous edits
    Molecular evolution  Source: http://en.wikipedia.org/w/index.php?oldid=392407939  Contributors: 10outof10die, 168..., A.bit, AdamRetchless, Alan Liefting, Aranae, Aunt Entropy, AxelBoldt,
    Borgx, Bornhj, Darth Ag.Ent, Debresser, Duncharris, Emw, Etxrge, Eugene van der Pijll, Ewen, GSlicer, Gaius Cornelius, GeoMor, Johnuniq, Josiahtimy, Kosigrim, Lexor, Lindosland, M stone,
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    Human evolution  Source: http://en.wikipedia.org/w/index.php?oldid=393080483  Contributors: !1029qpwoalskzmxn, 04carrolld, 168..., 2over0, 4444hhhh, 999powell, A robustus, A8UDI,
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    Evolutionary psychology  Source: http://en.wikipedia.org/w/index.php?oldid=389004714  Contributors: 2004-12-29T22:45Z, Adhib, Adoniscik, Alan Peakall, Alansohn, Allinthebrain, Andonic,
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Article Sources and Contributors                                                                                                                                                                      453
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Image Sources, Licenses and Contributors                                                                                                                                                               454
    File:Owen geologic timescale.png  Source: http://en.wikipedia.org/w/index.php?title=File:Owen_geologic_timescale.png  License: Public Domain  Contributors: Original uploader was
    TimVickers at en.wikipedia
    File:Vestiges dev diag.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Vestiges_dev_diag.jpg  License: Public Domain  Contributors: Robert Chambers
    File:Vertebrate archetype.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Vertebrate_archetype.jpg  License: Public Domain  Contributors: Richard Owen
    File:Darwins first tree.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Darwins_first_tree.jpg  License: Public Domain  Contributors: Charles Darwin
    File:Marsh Huxley horse.png  Source: http://en.wikipedia.org/w/index.php?title=File:Marsh_Huxley_horse.png  License: Public Domain  Contributors: Original uploader was TimVickers at
    en.wikipedia
    File:Huxley - Mans Place in Nature.png  Source: http://en.wikipedia.org/w/index.php?title=File:Huxley_-_Mans_Place_in_Nature.png  License: Public Domain  Contributors: Original uploader
    was TimVickers at en.wikipedia
    File:Titanothere Osborn.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Titanothere_Osborn.jpg  License: unknown  Contributors: Henry Fairfield Osborn
    File:Sexlinked inheritance white.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Sexlinked_inheritance_white.jpg  License: Public Domain  Contributors: User:Electric goat
    File:CollapsedtreeLabels-simplified.svg  Source: http://en.wikipedia.org/w/index.php?title=File:CollapsedtreeLabels-simplified.svg  License: Public Domain  Contributors: Original uploader
    was User:TimVickers, SVG conversion by User:User_A1. Original uploader was User A1 at en.wikipedia
    Image:Jean-baptiste lamarck2.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Jean-baptiste_lamarck2.jpg  License: GNU Free Documentation License  Contributors:
    User:Valérie75
    Image:Giraffes, Pengo.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Giraffes,_Pengo.jpg  License: unknown  Contributors: Deadstar, Pengo, Spawn Man, Winterkind
    File:Origin of Species title page.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Origin_of_Species_title_page.jpg  License: Public Domain  Contributors: Aleator, Alex6122,
    Aristeas, Ben Tillman, Fastfission, Gveret Tered, Inductiveload, Jappalang, Juiced lemon, Ragesoss, 5 anonymous edits
    File:Charles Darwin seated.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Charles_Darwin_seated.jpg  License: Public Domain  Contributors: w:Henry MaullHenry Maull
    (1829–1914) and w:John FoxJohn Fox (1832–1907) (Maull & Fox) UNIQ-ref-0-7337d7d7159c63fb-QINU
    File:Georges Cuvier - Elephant jaw.png  Source: http://en.wikipedia.org/w/index.php?title=File:Georges_Cuvier_-_Elephant_jaw.png  License: Public Domain  Contributors:
    Cuvier_elephant_jaw.jpg: w:Georges CuvierGeorges Cuvier (1769–1832)
    File:Darwin tree.png  Source: http://en.wikipedia.org/w/index.php?title=File:Darwin_tree.png  License: Public Domain  Contributors: Charles Darwin
    File:Charles Darwin - Pigeon skulls.png  Source: http://en.wikipedia.org/w/index.php?title=File:Charles_Darwin_-_Pigeon_skulls.png  License: Public Domain  Contributors: Charles Darwin
    and Francis Darwin
    File:Alfred Russel Wallace 1862 - Project Gutenberg eText 15997.png  Source:
    http://en.wikipedia.org/w/index.php?title=File:Alfred_Russel_Wallace_1862_-_Project_Gutenberg_eText_15997.png  License: Public Domain  Contributors: Grook Da Oger, Jappalang,
    Shadygrove2007, Tagishsimon, 2 anonymous edits
    File:Asa Gray (1867).jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Asa_Gray_(1867).jpg  License: Public Domain  Contributors: Jappalang
    File:Image-Rhea Darwinii1.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Image-Rhea_Darwinii1.jpg  License: Public Domain  Contributors: John Gould
    File:Darwin divergence.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Darwin_divergence.jpg  License: Public Domain  Contributors: User:Alexei Kouprianov
    File:Huxley - Mans Place in Nature.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Huxley_-_Mans_Place_in_Nature.jpg  License: Public Domain  Contributors: w:Benjamin
    Waterhouse HawkinsBenjamin Waterhouse Hawkins (1807–94)
    File:Pedigree of man (Haeckel 1874).jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Pedigree_of_man_(Haeckel_1874).jpg  License: Public Domain  Contributors: E Haeckel
    (1834–1919)
    File:Rev Baden Powell.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Rev_Baden_Powell.jpg  License: Public Domain  Contributors: Hartmann
    Image:Charles Darwin by Julia Margaret Cameron 2.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Charles_Darwin_by_Julia_Margaret_Cameron_2.jpg  License: Public
    Domain  Contributors: User:Davepape
    Image:Darwin ape.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Darwin_ape.jpg  License: Public Domain  Contributors: Unknown, The Hornet is no longer in publication and it is
    very likely for a 20-year-old artist in 1871 to have died before 1939
    Image:Structure of Evolutionary Biology.png  Source: http://en.wikipedia.org/w/index.php?title=File:Structure_of_Evolutionary_Biology.png  License: Creative Commons
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    File:Phylogenetic tree.svg  Source: http://en.wikipedia.org/w/index.php?title=File:Phylogenetic_tree.svg  License: unknown  Contributors: User:Sting
    Image:Brassica oleracea0.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Brassica_oleracea0.jpg  License: GNU Free Documentation License  Contributors: Ies, Lamiot, MPF
    Image:Darwin's finches.jpeg  Source: http://en.wikipedia.org/w/index.php?title=File:Darwin's_finches.jpeg  License: Public Domain  Contributors: John Gould (14.Sep.1804 - 3.Feb.1881)
    Image:HMS Beagle by Conrad Martens.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:HMS_Beagle_by_Conrad_Martens.jpg  License: Public Domain  Contributors: Conrad
    Martens (1801 - 21 August 1878)
    Image:Chromosome2 merge.png  Source: http://en.wikipedia.org/w/index.php?title=File:Chromosome2_merge.png  License: Public Domain  Contributors: Original uploader was Evercat at
    en.wikipedia
    file:Evolution pl.png  Source: http://en.wikipedia.org/w/index.php?title=File:Evolution_pl.png  License: unknown  Contributors: Original uploader was Mcy jerry at en.wikipedia
    file:Saurischian & Ornithischian pelvis bone modification w- selected species of Dinosauria.png  Source:
    http://en.wikipedia.org/w/index.php?title=File:Saurischian_&_Ornithischian_pelvis_bone_modification_w-_selected_species_of_Dinosauria.png  License: Public Domain  Contributors:
    User:Azcolvin429, User:Mario modesto
    file:Evolution insect mouthparts color.png  Source: http://en.wikipedia.org/w/index.php?title=File:Evolution_insect_mouthparts_color.png  License: GNU Free Documentation License
     Contributors: User:Azcolvin429, User:Ecelan
    File:GiraffaRecurrEn.svg  Source: http://en.wikipedia.org/w/index.php?title=File:GiraffaRecurrEn.svg  License: Creative Commons Attribution-Sharealike 2.0  Contributors: User:Drbug
    File:Route of vas deferens from testis to the penis.png  Source: http://en.wikipedia.org/w/index.php?title=File:Route_of_vas_deferens_from_testis_to_the_penis.png  License: GNU Free
    Documentation License  Contributors: User:Azcolvin429
    Image:Resin with insect (aka).jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Resin_with_insect_(aka).jpg  License: Creative Commons Attribution-Sharealike 2.5  Contributors:
    user:Aka
    Image:Asaphiscuswheelerii.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Asaphiscuswheelerii.jpg  License: GNU Free Documentation License  Contributors: DanielCD, Glenn,
    Kevmin, Saperaud
    file:Glyptodon-1.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Glyptodon-1.jpg  License: GNU Free Documentation License  Contributors: Albasmalko, DaB., Haplochromis,
    Hunadam, Kevmin, LadyofHats, Tolanor
    file:Armadillo.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Armadillo.jpg  License: Public Domain  Contributors: Boivie, Common Good, Nordelch, Pfctdayelise, 3 anonymous
    edits
    Image:Cynognathus BW.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Cynognathus_BW.jpg  License: Creative Commons Attribution 2.5  Contributors: User:ArthurWeasley
    Image:Horseevolution.png  Source: http://en.wikipedia.org/w/index.php?title=File:Horseevolution.png  License: GNU Free Documentation License  Contributors: Original uploader was Mcy
    jerry at en.wikipedia Later version(s) were uploaded by Obli at en.wikipedia.
    file:Camelid migration & evolution DymaxionMap 01.png  Source: http://en.wikipedia.org/w/index.php?title=File:Camelid_migration_&_evolution_DymaxionMap_01.png  License: GNU
    Free Documentation License  Contributors: User:Azcolvin429, User:Mcy jerry
    file:Pangaea Glossopteris.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Pangaea_Glossopteris.jpg  License: Public Domain  Contributors: User:Petter Bøckman
    file:Marsupial biogeography present day - dymaxion map.png  Source: http://en.wikipedia.org/w/index.php?title=File:Marsupial_biogeography_present_day_-_dymaxion_map.png  License:
    Creative Commons Attribution-Sharealike 3.0  Contributors: User:Azcolvin429
    Image:Drosophila melanogaster - side (aka).jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Drosophila_melanogaster_-_side_(aka).jpg  License: Creative Commons
    Attribution-Sharealike 2.5  Contributors: user:Aka
    Image:Arabidopsis thaliana.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Arabidopsis_thaliana.jpg  License: GNU Free Documentation License  Contributors: User:Roepers
Image Sources, Licenses and Contributors                                                                                                                                                        456
    Image:Tragopogon porrifolius flower.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Tragopogon_porrifolius_flower.jpg  License: GNU Free Documentation License
     Contributors: Ayacop, Quadell
    Image:Jean-Baptiste Lamarck.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Jean-Baptiste_Lamarck.jpg  License: Public Domain  Contributors: User:Duesentrieb
    File:Plumpollen0060.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Plumpollen0060.jpg  License: GNU Free Documentation License  Contributors: Aphaia, ComputerHotline,
    Duesentrieb, Ghouston, Maksim, Quadell, Satyrium
    File:Bee PD foto explained1.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Bee_PD_foto_explained1.jpg  License: Public Domain  Contributors: ComputerHotline, Dixi, Maksim,
    Quadell, Satyrium, Wst, Xhienne, Überraschungsbilder, 1 anonymous edits
    File:Carnica bee on sedum telephium.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Carnica_bee_on_sedum_telephium.jpg  License: Creative Commons Attribution 2.5
     Contributors: ComputerHotline, Dirk Hünniger, Guérin Nicolas, MikePhobos, Quadell
    Image:Wasp mimicry.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Wasp_mimicry.jpg  License: Creative Commons Attribution 2.5  Contributors: Image Credit: (A, C, E, and F)
    by Rob Knell; (B and D) by Tom Ings
    Image:Pfau imponierend.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Pfau_imponierend.jpg  License: GNU Free Documentation License  Contributors: User:BS Thurner Hof
    File:Random sampling genetic drift.gif  Source: http://en.wikipedia.org/w/index.php?title=File:Random_sampling_genetic_drift.gif  License: Creative Commons Attribution-Sharealike 3.0
     Contributors: User:Professor marginalia
    File:Random genetic drift chart.png  Source: http://en.wikipedia.org/w/index.php?title=File:Random_genetic_drift_chart.png  License: Creative Commons Attribution-Sharealike 3.0
     Contributors: User:Professor marginalia
    File:Population bottleneck.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Population_bottleneck.jpg  License: Creative Commons Attribution-Sharealike 3.0  Contributors:
    User:Professor marginalia
    File:Founder effect with drift.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Founder_effect_with_drift.jpg  License: GNU Free Documentation License  Contributors:
    User:Professor marginalia
    Image:Portulaca grandiflora mutant1.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Portulaca_grandiflora_mutant1.jpg  License: Creative Commons Attribution-Sharealike 3.0
     Contributors: User:JerryFriedman
    Image:Benzopyrene DNA adduct 1JDG.png  Source: http://en.wikipedia.org/w/index.php?title=File:Benzopyrene_DNA_adduct_1JDG.png  License: GNU Free Documentation License
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    File:Chromosomes mutations-en.svg  Source: http://en.wikipedia.org/w/index.php?title=File:Chromosomes_mutations-en.svg  License: Public Domain  Contributors: YassineMrabet
    File:Notable mutations.svg  Source: http://en.wikipedia.org/w/index.php?title=File:Notable_mutations.svg  License: Public Domain  Contributors: User:Mikael Häggström
    Image:Life cycle of a sexually reproducing organism.svg  Source: http://en.wikipedia.org/w/index.php?title=File:Life_cycle_of_a_sexually_reproducing_organism.svg  License: Public Domain
     Contributors: User:Wykis
    Image:Antibiotic resistance.svg  Source: http://en.wikipedia.org/w/index.php?title=File:Antibiotic_resistance.svg  License: Public Domain  Contributors: User:Wykis
    Image:Pavo cristatus albino001xx.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Pavo_cristatus_albino001xx.jpg  License: GNU Free Documentation License  Contributors:
    user:Dixi
    Image:Polydactyly 01 Lhand AP.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Polydactyly_01_Lhand_AP.jpg  License: GNU Free Documentation License  Contributors: ,
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    Image:Charles Darwin aged 51.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Charles_Darwin_aged_51.jpg  License: Public Domain  Contributors: Diwas, Fastfission,
    Infrogmation, Kurpfalzbilder.de, Ragesoss, Ryz, Sandpiper, 5 anonymous edits
    Image:Gasterosteus aculeatus.jpg  Source: http://en.wikipedia.org/w/index.php?title=File:Gasterosteus_aculeatus.jpg  License: unknown  Contributors: Bob Burkhardt, Siebrand, Visviva
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    Image:Cladistics-Apomorphy.png  Source: http://en.wikipedia.org/w/index.php?title=File:Cladistics-Apomorphy.png  License: Creative Commons Attribution 3.0  Contributors: User:Faustnh
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