Coronavirus: Coronaviruses Are A Group of Related Viruses That
Coronavirus: Coronaviruses Are A Group of Related Viruses That
org/wiki/Coronavirus
Coronavirus
Coronaviruses are a group of related viruses that
cause diseases in mammals and birds. In humans, Orthocoronavirinae
coronaviruses cause respiratory tract infections that
can range from mild to lethal. Mild illnesses include
some cases of the common cold (which has other
possible causes, predominantly rhinoviruses), while
more lethal varieties can cause SARS, MERS, and
COVID-19. Symptoms in other species vary: in
chickens, they cause an upper respiratory tract
disease, while in cows and pigs they cause diarrhea.
There are yet to be vaccines or antiviral drugs to
Transmission electron micrograph
prevent or treat human coronavirus infections.
(TEM) of avian infectious bronchitis
Coronaviruses constitute the subfamily virus
Orthocoronavirinae, in the family Coronaviridae,
order Nidovirales, and realm Riboviria.[5][6] They are
enveloped viruses with a positive-sense single-
stranded RNA genome and a nucleocapsid of helical
symmetry. The genome size of coronaviruses ranges
from approximately 26 to 32 kilobases, one of the
largest among RNA viruses.[7] They have
characteristic club-shaped spikes that project from
their surface, which in electron micrographs create an
image reminiscent of the solar corona from which
their name derives.[8]
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Discovery
Coronaviruses were first discovered in the 1930s when an acute respiratory infection of domesticated
chickens was shown to be caused by infectious bronchitis virus (IBV).[9] Arthur Schalk and M.C.
Hawn described in 1931 a new respiratory infection of chickens in North Dakota. The infection of
new-born chicks was characterized by gasping and listlessness. The mortality rate of the chicks was
40–90%.[10] Fred Beaudette and Charles Hudson six years later successfully isolated and cultivated
the infectious bronchitis virus which caused the disease.[11] In the 1940s, two more animal
coronaviruses, mouse hepatitis virus (MHV) and transmissible gastroenteritis virus (TGEV), were
isolated.[12] It was not realized at the time that these three different viruses were related.[13]
Human coronaviruses were discovered in the 1960s.[14][15] They were isolated using two different
methods in the United Kingdom and the United States.[16] E.C. Kendall, David Tyrrell and Malcom
Byone working at the Common Cold Unit of the British Medical Research Council in 1960 isolated
from a boy a novel common cold virus B814.[17][18][19] The virus was not able to be cultivated using
standards techniques which had successfully cultivated rhinoviruses, adenoviruses and other known
common cold viruses. In 1965, Tyrrell and Byone successfully cultivated the novel virus by serial
passaging it through organ culture of human embryonic trachea.[20] The isolated virus when
intranasally inoculated into volunteers caused a cold and was inactivated by ether which indicated it
had a lipid envelope.[17][21] Around the same time, Dorothy Hamre and John Procknow at the
University of Chicago isolated a novel cold virus 229E from medical students, which they grew in
kidney tissue culture. The novel virus 229E, like the virus strain B814, when inoculated into
volunteers caused a cold and was inactivated by ether.[22]
The two novel strains B814 and 229E were subsequently imaged by electron microscopy in 1967 by
Scottish virologist June Almeida at St. Thomas Hospital in London.[23][24] Almeida through electron
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microscopy was able to show that B814 and 229E were morphologically related by their distinctive
club-like spikes. Not only were they related with each other, but they were morphologically related to
infectious bronchitis virus (IBV).[25] A research group at the National Institute of Health the same
year was able to isolate another member of this new group of viruses using organ culture and named
the virus strain OC43 (OC for organ culture).[26] Like B814, 229E, and IBV, the novel cold virus
OC43 had distinctive club-like spikes when observed with the electron microscope.[27][28]
The IBV-like novel cold viruses were soon shown to be also morphologically related to the mouse
hepatitis virus.[12] This new group of IBV-like viruses came to be known as coronaviruses after their
distinctive morphological appearance.[8] Human coronavirus 229E and human coronavirus OC43
continued to be studied in subsequent decades.[29][30] The coronavirus strain B814 was lost. It is not
known which present human coronavirus it was.[31] Other human coronaviruses have since been
identified, including SARS-CoV in 2003, HCoV NL63 in 2004, HKU1 in 2005, MERS-CoV in 2012,
and SARS-CoV-2 in 2019.[32][33] There have also been a large number of animal coronaviruses
identified since the 1960s.[5]
Etymology
The name "coronavirus" is derived from Latin corona, meaning "crown" or "wreath", itself a
borrowing from Greek κορώνη korṓnē, "garland, wreath".[34][35] The name was first used in 1968 by
an informal group of virologists in the journal Nature to designate the new family of viruses. The
name refers to the characteristic appearance of virions (the infective form of the virus) by electron
microscopy, which have a fringe of large, bulbous surface projections creating an image reminiscent
of a crown or of a solar corona. This morphology is created by the viral spike peplomers, which are
proteins on the surface of the virus.[8][36]
Structure
Coronaviruses are large pleomorphic spherical particles with
bulbous surface projections.[37] The average diameter of the
virus particles is around 120 nm (.12 μm). The diameter of
the envelope is ~80 nm (.08 μm) and the spikes are ~20 nm
(.02 μm) long. The envelope of the virus in electron
micrographs appears as a distinct pair of electron dense shells.
[38][39]
Cross-sectional model of a
The viral envelope consists of a lipid bilayer where the coronavirus
membrane (M), envelope (E) and spike (S) structural proteins
are anchored.[40] A subset of coronaviruses (specifically the
members of betacoronavirus subgroup A) also have a shorter spike-like surface protein called
hemagglutinin esterase (HE).[5]
Inside the envelope, there is the nucleocapsid, which is formed from multiple copies of the
nucleocapsid (N) protein, which are bound to the positive-sense single-stranded RNA genome in a
continuous beads-on-a-string type conformation.[39][41] The lipid bilayer envelope, membrane
proteins, and nucleocapsid protect the virus when it is outside the host cell.[42]
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Genome
Coronaviruses contain a positive-sense, single-stranded RNA
genome. The genome size for coronaviruses ranges from 26.4
to 31.7 kilobases.[7] The genome size is one of the largest
among RNA viruses. The genome has a 5′ methylated cap and
a 3′ polyadenylated tail.[39]
The later reading frames encode the four major structural proteins: spike, envelope, membrane, and
nucleocapsid.[43] Interspersed between these reading frames are the reading frames for the accessory
proteins. The number of accessory proteins and their function is unique depending on the specific
coronavirus.[39]
Life cycle
Entry
On entry into the host cell, the virus particle is uncoated, and
its genome enters the cell cytoplasm.[39] The coronavirus The life cycle of a coronavirus
RNA genome has a 5′ methylated cap and a 3′ polyadenylated
tail, which allows the RNA to attach to the host cell's
ribosome for translation.[39] The host ribosome translates the initial overlapping open reading frame
of the virus genome and forms a long polyprotein. The polyprotein has its own proteases which cleave
the polyprotein into multiple nonstructural proteins.[39]
Replication
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other nonstructural proteins in the complex assist in the replication and transcription process. The
exoribonuclease nonstructural protein, for instance, provides extra fidelity to replication by providing
a proofreading function which the RNA-dependent RNA polymerase lacks.[45]
One of the main functions of the complex is to replicate the viral genome. RdRp directly mediates the
synthesis of negative-sense genomic RNA from the positive-sense genomic RNA. This is followed by
the replication of positive-sense genomic RNA from the negative-sense genomic RNA.[39] The other
important function of the complex is to transcribe the viral genome. RdRp directly mediates the
synthesis of negative-sense subgenomic RNA molecules from the positive-sense genomic RNA. This
is followed by the transcription of these negative-sense subgenomic RNA molecules to their
corresponding positive-sense mRNAs.[39]
Release
The replicated positive-sense genomic RNA becomes the genome of the progeny viruses. The
mRNAs are gene transcripts of the last third of the virus genome after the initial overlapping reading
frame. These mRNAs are translated by the host's ribosomes into the structural proteins and a number
of accessory proteins.[39] RNA translation occurs inside the endoplasmic reticulum. The viral
structural proteins S, E, and M move along the secretory pathway into the Golgi intermediate
compartment. There, the M proteins direct most protein-protein interactions required for assembly of
viruses following its binding to the nucleocapsid.[46] Progeny viruses are then released from the host
cell by exocytosis through secretory vesicles.[46]
Transmission
The interaction of the coronavirus spike protein with its complement host cell receptor is central in
determining the tissue tropism, infectivity, and species range of the virus.[47][48] The SARS
coronavirus, for example, infects human cells by attaching to the angiotensin-converting enzyme 2
(ACE2) receptor.[49]
Taxonomy
The scientific name for coronavirus is Orthocoronavirinae or
Coronavirinae.[2][3][4] Coronaviruses belong to the family of
Coronaviridae, order Nidovirales, and realm Riboviria.[5][6]
They are divided into alphacoronaviruses and
betacoronaviruses which infect mammals – and
gammacoronaviruses and deltacoronaviruses which primarily
infect birds.[50]
Phylogenetic tree of
coronaviruses
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Genus: Alphacoronavirus
Species: Human coronavirus 229E, Human
coronavirus NL63, Miniopterus bat
coronavirus 1, Miniopterus bat coronavirus
HKU8, Porcine epidemic diarrhea virus, Rhinolophus bat coronavirus HKU2,
Scotophilus bat coronavirus 512
Genus Betacoronavirus;[51] type species: Murine coronavirus
Species: Betacoronavirus 1 (Bovine Coronavirus, Human coronavirus
OC43), Human coronavirus HKU1, Murine coronavirus, Pipistrellus bat
coronavirus HKU5, Rousettus bat coronavirus HKU9, Severe acute
respiratory syndrome-related coronavirus (SARS-CoV, SARS-CoV-2),
Tylonycteris bat coronavirus HKU4, Middle East respiratory syndrome-
related coronavirus, Hedgehog coronavirus 1 (EriCoV)
Genus Gammacoronavirus; type species: Infectious bronchitis virus
Species: Beluga whale coronavirus SW1, Infectious bronchitis virus
Genus Deltacoronavirus; type species: Bulbul coronavirus HKU11
Species: Bulbul coronavirus HKU11, Porcine coronavirus HKU15
Evolution
The most recent common ancestor (MRCA) of all
coronaviruses is estimated to have existed as recently as 8000
BCE, although some models place the common ancestor as
far back as 55 million years or more, implying long term
coevolution with bat and avian species.[52] The most recent
common ancestor of the alphacoronavirus line has been
placed at about 2400 BCE, the betacoronavirus line at 3300
BCE, the gammacoronavirus line at 2800 BCE, and the Origins of human coronaviruses
deltacoronavirus line at about 3000 BCE. Bats and birds, as with possible intermediate
warm-blooded flying vertebrates, are an ideal natural reservoir hosts
for the coronavirus gene pool (bats the reservoir for
alphacoronavirus and betacoronavirus – and birds the
reservoir for gammacoronavirus and deltacoronavirus). The large number of host bat and avian
species, and their global range, has enabled extensive evolution and dissemination of
coronaviruses.[53]
Many human coronavirus have their origin in bats.[54] The human coronavirus NL63 shared a
common ancestor with a bat coronavirus (ARCoV.2) between 1190–1449 CE.[55] The human
coronavirus 229E shared a common ancestor with bat coronavirus (GhanaGrp1 Bt CoV) between
1686–1800 CE.[56] More recently, alpaca coronavirus and human coronavirus 229E diverged
sometime before 1960.[57] MERS-CoV emerged in humans from bats through the intermediate host of
camels.[58] MERS-CoV, although related to several bat coronavirus species, appears to have diverged
from these several centuries ago.[59] The most closely related bat coronavirus and SARS-CoV
diverged in 1986.[60] A possible path of evolution, of SARS coronavirus and keen bat coronaviruses,
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suggests that SARS related coronaviruses coevolved in bats for a long time. The ancestors of SARS-
CoV first infected leaf-nose bats of the genus Hipposideridae; subsequently, they spread to horseshoe
bats in the species Rhinolophidae, and then to civets, and finally to humans.[61][62]
Unlike other betacoronaviruses, bovine coronavirus of the species Betacoronavirus 1 and subgenus
Embecovirus is thought to have originated in rodents and not in bats.[54][63] In the 1790s, equine
coronavirus diverged from the bovine coronavirus after a cross-species jump.[64] Later in the 1890s,
human coronavirus OC43 diverged from bovine coronavirus after another cross-species spillover
event.[65][64] It is speculated that the flu pandemic of 1890 may have been caused by this spillover
event, and not by the influenza virus, because of the related timing, neurological symptoms, and
unknown causative agent of the pandemic.[66] Human coronavirus OC43 besides causing respiratory
infections is also suspected of playing a role in neurological diseases.[67] In the 1950s, the human
coronavirus OC43 began to diverge into its present genotypes.[68] Phylogentically, mouse hepatitis
virus (Murine coronavirus), which infects the mouse's liver and the central nervous system,[69] is
related to human coronavirus OC43 and bovine coronavirus. Human coronavirus HKU1, like the
aforementioned viruses, also has its origins in rodents.[54]
Human coronaviruses
Coronaviruses vary significantly in risk factor. Some can kill
more than 30% of those infected, such as MERS-CoV, and
some are relatively harmless, such as the common cold.[39]
Coronaviruses can cause colds with major symptoms, such as
fever, and a sore throat from swollen adenoids.[70]
Coronaviruses can cause pneumonia (either direct viral
pneumonia or secondary bacterial pneumonia) and bronchitis
(either direct viral bronchitis or secondary bacterial
bronchitis).[71] The human coronavirus discovered in 2003,
SARS-CoV, which causes severe acute respiratory syndrome Illustration of SARSr-CoV virion
(SARS), has a unique pathogenesis because it causes both
upper and lower respiratory tract infections.[71]
Six species of human coronaviruses are known, with one species subdivided into two different strains,
making seven strains of human coronaviruses altogether. Four of these coronaviruses continually
circulate in the human population and produce the generally mild symptoms of the common cold in
adults and children worldwide: -OC43, -HKU1, HCoV-229E, -NL63.[72] Coronaviruses cause about
15% of commons colds.[73] The majority of colds are caused by rhinoviruses.[74] The four mild
coronaviruses have a seasonal incidence occurring in the winter months in temperate climates.[75][76]
There is no preference towards a particular season in tropical climates.[77]
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In 2003, following the outbreak of severe acute respiratory syndrome (SARS) which had begun the
prior year in Asia, and secondary cases elsewhere in the world, the World Health Organization
(WHO) issued a press release stating that a novel coronavirus identified by a number of laboratories
was the causative agent for SARS. The virus was officially named the SARS coronavirus (SARS-
CoV). More than 8,000 people were infected, about ten percent of whom died.[49]
In September 2012, a new type of coronavirus was identified, initially called Novel Coronavirus 2012,
and now officially named Middle East respiratory syndrome coronavirus (MERS-CoV).[87][88] The
World Health Organization issued a global alert soon after.[89] The WHO update on 28 September
2012 said the virus did not seem to pass easily from person to person.[90] However, on 12 May 2013,
a case of human-to-human transmission in France was confirmed by the French Ministry of Social
Affairs and Health.[91] In addition, cases of human-to-human transmission were reported by the
Ministry of Health in Tunisia. Two confirmed cases involved people who seemed to have caught the
disease from their late father, who became ill after a visit to Qatar and Saudi Arabia. Despite this, it
appears the virus had trouble spreading from human to human, as most individuals who are infected
do not transmit the virus.[92] By 30 October 2013, there were 124 cases and 52 deaths in Saudi
Arabia.[93]
After the Dutch Erasmus Medical Centre sequenced the virus, the virus was given a new name,
Human Coronavirus—Erasmus Medical Centre (HCoV-EMC). The final name for the virus is Middle
East respiratory syndrome coronavirus (MERS-CoV). The only U.S. cases (both survived) were
recorded in May 2014.[94]
In May 2015, an outbreak of MERS-CoV occurred in the Republic of Korea, when a man who had
traveled to the Middle East, visited four hospitals in the Seoul area to treat his illness. This caused one
of the largest outbreaks of MERS-CoV outside the Middle East.[95] As of December 2019, 2,468
cases of MERS-CoV infection had been confirmed by laboratory tests, 851 of which were fatal, a
mortality rate of approximately 34.5%.[96]
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Other animals
Coronaviruses have been recognized as causing pathological conditions in veterinary medicine since
the 1930s.[12] Except for avian infectious bronchitis, the major related diseases have mainly an
intestinal location.[106]
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Diseases caused
Coronaviruses primarily infect the upper respiratory and gastrointestinal tract of mammals and birds.
They also cause a range of diseases in farm animals and domesticated pets, some of which can be
serious and are a threat to the farming industry. In chickens, the infectious bronchitis virus (IBV), a
coronavirus, targets not only the respiratory tract but also the urogenital tract. The virus can spread to
different organs throughout the chicken.[107] Economically significant coronaviruses of farm animals
include porcine coronavirus (transmissible gastroenteritis coronavirus, TGE) and bovine coronavirus,
which both result in diarrhea in young animals. Feline coronavirus: two forms, feline enteric
coronavirus is a pathogen of minor clinical significance, but spontaneous mutation of this virus can
result in feline infectious peritonitis (FIP), a disease associated with high mortality. Similarly, there
are two types of coronavirus that infect ferrets: Ferret enteric coronavirus causes a gastrointestinal
syndrome known as epizootic catarrhal enteritis (ECE), and a more lethal systemic version of the
virus (like FIP in cats) known as ferret systemic coronavirus (FSC).[108] There are two types of canine
coronavirus (CCoV), one that causes mild gastrointestinal disease and one that has been found to
cause respiratory disease. Mouse hepatitis virus (MHV) is a coronavirus that causes an epidemic
murine illness with high mortality, especially among colonies of laboratory mice.[109]
Sialodacryoadenitis virus (SDAV) is highly infectious coronavirus of laboratory rats, which can be
transmitted between individuals by direct contact and indirectly by aerosol. Acute infections have high
morbidity and tropism for the salivary, lachrymal and harderian glands.[110]
A HKU2-related bat coronavirus called swine acute diarrhea syndrome coronavirus (SADS-CoV)
causes diarrhea in pigs.[111]
Prior to the discovery of SARS-CoV, MHV had been the best-studied coronavirus both in vivo and in
vitro as well as at the molecular level. Some strains of MHV cause a progressive demyelinating
encephalitis in mice which has been used as a murine model for multiple sclerosis. Significant
research efforts have been focused on elucidating the viral pathogenesis of these animal
coronaviruses, especially by virologists interested in veterinary and zoonotic diseases.[112]
Domestic animals
Infectious bronchitis virus (IBV) causes avian infectious bronchitis.
Porcine coronavirus (transmissible gastroenteritis coronavirus of pigs, TGEV).
[113][114]
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See also
Bat-borne virus
Zoonosis
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Further reading
Alwan A, Mahjour J, Memish ZA (2013). "Novel coronavirus infection: time to
stay ahead of the curve" (http://www.emro.who.int/emhj-volume-19-2013/volu
me-19-supplement-1-coronavirus/volume-19-supplement-1-coronavirus.htm).
Eastern Mediterranean Health Journal = La Revue De Sante De La
Mediterranee Orientale = Al-Majallah Al-Sihhiyah Li-Sharq Al-Mutawassit . 19
Suppl 1: S3–4. doi:10.26719/2013.19.supp1.S3 (https://doi.org/10.26719%2F2
013.19.supp1.S3). PMID 23888787 (https://pubmed.ncbi.nlm.nih.gov/238887
87).
Laude H, Rasschaert D, Delmas B, Godet M, Gelfi J, Charley B (June 1990).
"Molecular biology of transmissible gastroenteritis virus". Veterinary
Microbiology. 23 (1–4): 147–54. doi:10.1016/0378-1135(90)90144-K (https://d
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bmed.ncbi.nlm.nih.gov/2169670).
Sola I, Alonso S, Zúñiga S, Balasch M, Plana-Durán J, Enjuanes L (April 2003).
"Engineering the transmissible gastroenteritis virus genome as an expression
vector inducing lactogenic immunity" (https://www.ncbi.nlm.nih.gov/pmc/artic
les/PMC150661). Journal of Virology. 77 (7): 4357–69.
doi:10.1128/JVI.77.7.4357-4369.2003 (https://doi.org/10.1128%2FJVI.77.7.435
7-4369.2003). PMC 150661 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1
50661). PMID 12634392 (https://pubmed.ncbi.nlm.nih.gov/12634392).
Tajima M (1970). "Morphology of transmissible gastroenteritis virus of pigs. A
possible member of coronaviruses. Brief report" (https://www.semanticschola
r.org/paper/fb11c63ac7ca2c5a32f08511c9167afb953dfc30). Archiv Fur Die
Gesamte Virusforschung. 29 (1): 105–08. doi:10.1007/BF01253886 (https://do
i.org/10.1007%2FBF01253886). PMC 7086923 (https://www.ncbi.nlm.nih.gov/
pmc/articles/PMC7086923). PMID 4195092 (https://pubmed.ncbi.nlm.nih.gov/
4195092).
Classification ICD-10: D
B97.2 (https://i
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Coronavirus - Wikipedia https://en.wikipedia.org/wiki/Coronavirus
cd.who.int/brow
se10/2019/en#
/B97.2) ·
MeSH:
D017934 (http
s://www.nlm.ni
h.gov/cgi/mesh/
2015/MB_cgi?fi
eld=uid&term=
D017934)
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