Hepatitis C Virus: Screening, Diagnosis, and Interpretation of Laboratory Assays
Hepatitis C Virus: Screening, Diagnosis, and Interpretation of Laboratory Assays
a 9.6 kb positive sense single-stranded RNA genome composed of assays used and differences in the population and practices between
a long open reading frame (ORF) flanked by untranslated regions different regions of the country. Studies in different population
(UTR’s) at both the ends. The precursor is cleaved into at least 10 groups found varying prevalence rates [Table 1].[10-19]
different proteins: the structural proteins: Core, E1, E2, and p7; as
well as the nonstructural (NS) proteins: NS2, NS3, NS4A, NS4B, Parenteral transmission through blood transfusion and
NS5A, and NS5B. An important feature of the HCV genome is its infected needles and syringes remain the most significant route
high degree of genetic variability. The E1 and E2 regions are the of transmission for HCV in our country. Blood transfusion is
most variable, while the 5’UTR and terminal segment of the 3’UTR an effective mode of transmission as it allows a large quantum
are highly conserved.[6] HCV has a high propensity for establishing of infective virions into the susceptible patient. In developed
chronic infection. It has been estimated that in chronically infected countries, numerous corrective measures have reduced the spread
people approximately 1012 viral particles are generated every day. of infection through this route. This has been documented in
This remarkable replicative rate in combination with the highly Japan where HCV prevalence dropped from 4.9 to 1.9% after
error prone polymerase activity of the virus results in tremendous mandatory screening was introduced in 1990, and in the US where
genetic diversity and existence of various quasispecies within an the prevalence dropped from 3.84 to 0.57%.[20] In India, mandatory
infected individual.[6] HCV has been classified into six genotypes[1-6] screening for HCV was introduced in 2002. Many of the more
with multiple subtypes. Genotyping is recognized as the primary recent blood donor studies report prevalence of <1.0%, indicating
tool for assessing the course of infection and determining treatment that increased screening and education of donors is working.
duration and response.[7] Replacement donors typically have higher HCV infection rates
than voluntary donors.[21]
Epidemiology of HCV Infection
HCV genotypes predominant in India are genotypes 3 and 1,
Global constituting approximately 60 and 30% of the six genotypes,
The estimated global prevalence of HCV infection is 3% respectively. Genotype 4 constitutes about 4%, the remaining
which translates to over 180 million people worldwide. High genotypes contributing to <2% each. Most of the reported studies
seroprevalence is observed in Asian and African countries, from India have shown that genotype 3 predominates in the north,
whereas the developed world including North America, northern east, and west India; whereas genotype 1 is commoner in south India.
and western Europe, and Australia have a low prevalence.[2,6] The reason for this difference between these regions is yet to be
In developing countries, the seroprevalence of HCV displays a explained. Various HCV genotypes prevalent across different regions
high range of variability, ranging from 0.9% in India to higher in India, as observed in select recent studies are shown in Table 2.[22-27]
prevalence from 2.1-6.5% in many countries. Egypt has a reported
seroprevalence of about 22% and is the highest in the world.[2] Natural history following infection with HCV
Substantial regional differences exist in the distribution of HCV Hepatitis C can present as acute or chronic hepatitis.
genotypes in the world. Genotypes 1, 2, and 3 have a worldwide Most of the cases of acute hepatitis C are asymptomatic.
distribution and HCV subtypes 1a and 1b are the most common Symptomatic acute hepatitis with jaundice is seen in 10-15%
genotypes prevalent.[7] of patients only and can be severe, but fulminant liver failure
is rare. Spontaneous clearance is observed in 25-50% of those
Epidemiology: India with symptomatic infection and in 10-15% of those with
HCV is considered an emerging infection in India. There is a lack asymptomatic infection. [1,28] The natural history following
of existing literature on the true prevalence in general population exposure to HCV is summarized in Figure 1.
due to paucity of well-designed population-based studies from the
country. Data available is mostly derived from isolated hospital- Chronic hepatitis C is marked by the persistence of HCV RNA in
based studies and blood banks. The estimates thus obtained have the blood for at least 6 months after the onset of acute infection.
been then extrapolated onto the general population. The estimated The risk of progression to chronic infection[28] by HCV is influenced
HCV prevalence at present is 1-1.9%.[8] Only one systematic study by various factors including:
from West Bengal determined a prevalence of 0.87%.[9] The majority • Age at the time of infection (more if infection occurs at age
of the studies in blood donors report prevalence from 0.3-1.85%. >25 years)
The differences can be due to different generations of the anti-HCV • Gender (males > females)
Modes of transmission
HCV is transmitted from one person to another principally by
parenteral route. The major routes of transmission are:
• Injection drug use,
• blood transfusion, and
• unsafe therapeutic injections.
Figure 1: Natural history following infection with hepatitis C virus Screening for HCV infection
HCV screening has several potential benefits. By detecting HCV
infection early, antiviral treatment can be offered earlier in the
• Ethnicity (higher in Africans than in Caucasians and Hispanic
course of the disease which is more effective than starting at a
whites)
• Coinfection with human immunodeficiency virus (HIV), HBV later stage.[30] Further, early detection together with counseling
• Concomitant alcohol consumption and lifestyle modifications may reduce the risk of transmission
• Comorbid conditions like cancer, immunosuppression, insulin of HCV infection to other people. The optimal approach to
resistance, nonalcoholic steatohepatitis, obesity, etc. screen for HCV is to test the individuals having risk factors for
exposure to the virus. The American Association for the Study
Treatment for HCV infection of Liver Diseases (AASLD) recommends[4] screening for HCV for
Treatment for HCV infection is available. The role of treatment the following individuals:
in acute infection is being evaluated and currently the existing • Recipient of blood or blood components (red cells, platelets,
data shows that response to 6 months of standard therapy fresh frozen plasma).
with interferon (IFN) in terms of absence of HCV RNA from • Recipient of blood from a HCV-positive donor.
serum is excellent and progression to chronicity is reduced. • Injection drug user (past or present).
The recommended treatment for chronic HCV infection is • Persons with following associated conditions;
a combination of a pegylated IFN alpha and ribavirin. The • persons with HIV infection,
treatment duration depends on the genotype of the virus and • persons with hemophilia,
it has two goals. The first is to achieve sustained eradication of • persons who have ever been on hemodialysis, and
HCV, that is, sustained virologic response (SVR), which is defined • persons with unexplained abnormal aminotransferase
levels.
• Children born to HCV-infected mothers. The window period has been documented to decrease from
• Healthcare workers after a needle stick injury or mucosal approximately 16 weeks to 10 weeks and finally to 8 weeks with the
exposure to HCV-positive blood. introduction of first-, second-, and third-generation anti-HCV ELISAs,
• Current sexual partners of HCV-infected persons. respectively. The newest generation of immunoassays available, that
is, fourth generation of tests is those that simultaneously detect HCV
Risk of HCV infection in recipients of blood transfusion capsid antigen as well as antibodies to the core, NS3, NS4, and NS5
Prior to 1992, blood transfusions carried a high risk of HCV regions of the virus. These assays have further reduced the window
infection, approximately 15-20% with each unit transfused.[31] In period of HCV detection by 17 days to already existing assays. But the
1988, 90% of cases of posttransfusion hepatitis were due to NANBH literature supporting the inclusion of these assays as 4th generation on
viruses which was later found out to be due to HCV. The move to the basis of improved sensitivity, specificity is limited.[1,36]
all-volunteer blood donors instead of paid donors had significantly
reduced the risk of posttransfusion hepatitis to 10%. Screening Supplemental anti-HCV test and significance of signal-to-cut off
of blood further reduced the rate of posttransfusion hepatitis C (S/CO) ratio
by a factor of about 10,000; to a current rate of 1 per million Recombinant immunoblot assays (RIBA) were used in the past
transfusions.[32] The few cases that still occur are due to newly infected as supplemental assays to confirm serological reactivity by ELISA,
people donating blood before they have developed antibodies but are now clinically obsolete with the availability of molecular
(window period) to the virus, which can take up to 6-8 weeks. tests.[37] Confirmation of serological reactive tests may be done
by a nucleic acid test (NAT) for detection of HCV RNA. Recent
studies have also suggested that higher the anti-HCV antibody titer
Virological Tools for Diagnosis
in patient’s serum; more are the chances of it being true positive
than false positive. This was the basis of inclusion of measurement
Virological diagnosis of HCV infection is based on two categories of
of anti-HCV S/CO ratio that indirectly represents higher
laboratory tests, namely serologic assays detecting specific antibody to
antibody levels in patient’s sample, as a marker for confirmation
HCV (anti-HCV) (indirect tests) and assays that can detect, quantify,
of serological reactive results. CDC in 2003 expanded the earlier
or characterize the components of HCV viral particles, such as HCV
guidelines to recommend an option for inclusion of S/CO ratio to
RNA and core antigen (direct tests). Direct and indirect virological
determine the need for supplementary testing.[38]
tests play a key role in the diagnosis of infection, therapeutic decision-
making, and assessment of virological response to therapy.
This was based on the analysis of many thousands of repeatedly
reactive samples screened for anti-HCV, and their results compared
Anti-HCV Antibodies to those generated by a supplemental assay. It was estimated that
for ELISA, a S/CO of 3.8, and for chemiluminescence immunoassay
The “serologic window” between HCV infection and the detection (CLIA) a S/CO of 8, predicted true viremia in 95-98% cases. Since then,
of specific antibodies varies from patient to patient. With current various studies have also confirmed the usefulness of S/CO in predicting
assays, seroconversion occurs on an average at 6-8 weeks after true positive anti-HCV results.[1,39-41] This should be limited to only
the onset of infection. In patients with spontaneously resolving diagnostic tests as this criteria does not hold true for screening assays.
infection, anti-HCV may persist throughout life, or decrease slightly
while remaining detectable, or gradually disappear after several HCV core antigen (HCV Ag) detection
years.[33] Anti-HCV persists indefinitely in patients who develop During the past decade, several assays for the detection of the
chronic infection, although antibodies may become undetectable in core antigen of HCV by ELISA or CLIA have been developed.[42]
hemodialysis patients or in cases of profound immunosuppression. These assays were envisioned as alternatives to NAT to be used
in resource-limited settings, where molecular laboratory services
Anti-HCV detection are either not available or not widely utilized owing to cost issues.
Serological assays for detecting anti-HCV were developed and Since these assays are either ELISA or CLIA based, they are user
improved following the initial discovery of the virus because of friendly, require less technical expertise and are less expensive
the urgent need to screen blood donors and prevent transmission. compared to molecular techniques. Evaluations in transfusion
Anti-HCV is typically identified by using enzyme-linked settings have shown that the HCVcore Ag assay detects HCV
immunosorbent assay (ELISA). Three generations of ELISAs infection as effective as NAT, about 40-50 days earlier than the
[Table 3] have been developed since 1989. The first generation current third generation anti-HCV screening assays. HCV core
assays, which incorporated the recombinant c100-3 epitope from antigen levels closely follow HCV RNA dynamics, and allow
the NS4 region, were used until 1992, when they were replaced clinical monitoring of a patient’s therapy, independently of HCV
by second generation assays, which additionally incorporated genotype.[42,43] The major limitation of the HCV core Ag assay is its
epitopes c22-3 and c33c from the HCV core and NS3 regions, lower sensitivity limiting its utility. A new generation CLIA based
respectively. The third generation assays contained reconfigured quantitative test (Architect HCV Ag Test, Abbot, Germany) with
core and NS3 antigens and in addition a newly incorporated sensitivity comparable to that of end point PCR (~1,000 IU/ml) but
antigen from the NS5 region.[34-36] less than that of real time RT-PCR has been reported.[44,45]
NAT: Detection of HCV RNA as a globally recognized standard for calibration of quantitative
assays.[1] For monitoring purposes, it is important to use the same
Molecular virological techniques play a key role in diagnosis assay before and throughout during therapy.[4,49]
and monitoring of treatment for HCV. Because it is difficult to
cultivate the virus in cell culture, molecular techniques were Iatrogenic exposure and postexposure prophylaxis
instrumental in first identifying HCV, making it one of the first The potential of health care delivery to transmit HCV to
pathogens to be identified by purely molecular methods. NAT is healthcare worker (HCW) is increasingly being recognized
considered the ‘gold standard’ for detecting active HCV replication. especially if infection control or disinfection practices are
HCV NAT is extremely useful in establishing the diagnosis of inadequate and contaminated equipment is shared among patients.
acute HCV infection, since RNA is detectable as early as 1 week The mechanisms of transmission in the healthcare setting are
after exposure via needle-stick or blood transfusion, and at least related to:[50]
4-6 weeks prior to seroconversion as demonstrated in a number • Improperly cleaned, disinfected, or sterilized equipment
of transmission settings.[46-48] The diagnosis of HCV infection is • Medication administration (e.g., direct syringe reuse,
established with antibody screening followed by NAT for HCV contamination of medication through syringe reuse, etc.)
RNA for confirmation as well as for follow-up of patients on • Blood sampling
treatment.[1] Viral load assessment at baseline is also critical for
determining response kinetics during therapy. Table 4 enumerates The CDC in collaboration with healthcare infection control practices
the role of NAT in HCV diagnosis. advisory committee (HICPAC) has issued recommendations following
occupational exposure to HCV.[51-53] These recommendations emphasize
Qualitative NAT that each institution should have its own policy regarding follow-up
Qualitative NAT have traditionally been considered as of personnel who sustain percutaneous or permucosal exposure to
confirmatory tools for HCV diagnosis. These assays commonly suspected HCV infected blood. They minimally recommend:
utilize conventional RT-PCR or transcription-mediated a. Baseline testing for anti-HCV in source.
amplification (TMA). The present indication of qualitative NAT b. Baseline and follow-up testing for anti-HCV and alanine
is to confirm viremia (especially low level viremia) in patients aminotransferase (ALT) levels in exposed at 6 months and
with reactive anti-HCV results, and to screen blood donations for 1 year postexposure.
evidence of infection with HCV.[1,49] With the availability of more c. Confirmation by NAT of all anti-HCV reactive results.
sensitive quantitative PCR that has a lower limit of detection (LOD) d. Education of workers about the risk for and prevention of
to as low as 30 copies/ml, qualitative assays have taken a back seat blood-borne infections.
especially in diagnostic laboratories.
Table 5: Commercial HCV RNA quantification tests (RUO, Research use only; ASR, Analyte-specific reagents). Data
collected from the manufacturer’s website
Test (Manufacturer) Method Measurable IU/ml-to copies/ Status
range (IU/ml) ml conversion
Versant HCV RNA 3.0 (Siemens) bDNA 615-7.7 × 106 5.2 FDA approved
Cobas Amplicor Monitor HCV v2.0 (Roche) Semiautomated RT-PCR 600-5 × 105 2.7 RUO
Real Time HCV (Abbott) qRT-PCR 10-1 × 107 3.8 ASR
Cobas AmpliPrep/Cobas TaqMan (Roche) Automated q RT-PCR 43-6.9 × 107 3 FDA approved
High Pure/Cobas Taqman (Roche) qRT-PCR 25-3.9 × 108 3 FDA approved
HCV: Hepatitis C virus; RNA: ribonucleic acid; bDNA: branched deoxyribonucleic acid; qRT-PCR: quantitative reverse transcriptase polymerase chain reaction;
FDA: Food and Drug Administration
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evaluation of four automated chemiluminescence immunoassays
for hepatitis C virus antibody detection. J Clin Microbiol Cite this article as: Gupta E, Bajpai M, Choudhary A. Hepatitis C virus:
Screening, diagnosis, and interpretation of laboratory assays. Asian J Transfus
2008;46:3919-23.
Sci 2014;8:19-25.
40. Ren RF, Lv QS, Zhuang H, Li JJ, Gong XY, Gao GJ, et al.
Source of Support: Nil , Conflicting Interest: None declared.
Significance of the signal-to-cutoff ratios of anti-hepatitis C enzyme