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VVMIVUGAV ILLUS 1b LAU ST LAIN AVELUIN
and COVID-19
Coronavirus infection in humans is commonly
associated with mild to severe respiratory diseases,
with high fever, severe inflammation, cough, and
internal organ dysfunction that can even lead to
death (92). Most of the identified coronaviruses
cause the common cold in humans. However, this
changed when SARS-CoV was identified, paving the
way for severe forms of the disease in humans (22).
Our previous experience with the outbreaks of other
coronaviruses, like SARS and MERS, suggests that
the mode of transmission in COVID-19 as mainly
human-to-human transmission via direct contact,
droplets, and fomites (25). Recent studies have
demonstrated that the virus could remain viable for
hours in aerosols and up to days on surfaces; thus,
aerosol and fomite contamination could play potent
roles in the transmission of SARS-CoV-2 (257).
The immune response against coronavirus is vital
to control and get rid of the infection. However,
maladjusted immune responses may contribute to the
immunopathology of the disease, resulting in
impairment of pulmonary gas exchange.
Understanding the interaction between CoVs and
4... &% a mm. uhWuhan [17]. Similarly, the severity and
case fatality rate in patients outside
China has been reported to be milder
[6]. This may either be due to selection
bias wherein the cases reporting from
Wuhan included only the severe cases
or due to predisposition of the Asian
population to the virus due to higher
expression of ACE, receptors on the
respiratory mucosa [11].
Disease in neonates, infants and
children has been also reported to be
significantly milder than their adult
counterparts. In a series of 34 children
admitted to a hospital in Shenzhen,
China between January 19th andThere is no currently licensed specific antiviral
treatment for MERS- and SARS-CoV infections, and
the main focus in clinical settings remains on
lessening clinical signs and providing supportive
care (183-186). Effective drugs to manage COVID-
19 patients include remdesivir, lopinavir/ritonavir
alone or in a blend with interferon beta, convalescent
plasma, and monoclonal antibodies (MAbs);
however, efficacy and safety issues of these drugs
require additional clinical trials (187, 281). A
controlled trial of ritonavir-boosted lopinavir and
interferon alpha 2b treatment was performed on
COVID-19 hospitalized patients
(ChiCTR2000029308) (188). In addition, the use of
hydroxychloroquine and tocilizumab for their
potential role in modulating inflammatory responses
in the lungs and antiviral effect has been proposed
and discussed in many research articles. Still, no
fool-proof clinical trials have been published (194,
196, 197, 261-272). Recently, a clinical trial
conducted on adult patients suffering from severe
COVID-19 revealed no benefit of lopinavir-ritonavir
treatment over standard care (273).
The efforts to control SARS-CoV-2 infection
utilize defined strategies as followed against MERSsymptoms were noticed in those patients that are
infected by human-to-human transmission (14).
The initial trends suggested that the mortality
associated with COVID-19 was less than that of
previous outbreaks of SARS (101). The updates
obtained from countries like China, Japan, Thailand,
and South Korea indicated that the COVID-19
patients had relatively mild manifestations compared
to those with SARS and MERS (4). Regardless of
the coronavirus type, immune cells, like mast cells,
that are present in the submucosa of the respiratory
tract and nasal cavity are considered the primary
barrier against this virus (92). Advanced in-depth
analysis of the genome has identified 380 amino acid
substitutions between the amino acid sequences of
SARS-CoV-2 and the SARS/SARS-like
coronaviruses. These differences in the amino acid
sequences might have contributed to the difference
in the pathogenic divergence of SARS-CoV-2 (16).
Further research is required to evaluate the possible
differences in tropism, pathogenesis, and
transmission of this novel agent associated with this
change in the amino acid sequence. With the current
outbreak of COVID-19, there is an expectancy of a
significant increase in the number of publishedsanitation practices needs to be given due emphasis
(249-252). Future explorative research needs to be
conducted with regard to the fecal-oral transmission
of SARS-CoV-2, along with focusing on
environmental investigations to find out if this virus
could stay viable in situations and atmospheres
facilitating such potent routes of transmission. The
correlation of fecal concentrations of viral RNA with
disease severity needs to be determined, along with
assessing the gastrointestinal symptoms and the
possibility of fecal SARS-CoV-2 RNA detection
during the COVID-19 incubation period or
convalescence phases of the disease (249-252).
The lower respiratory tract sampling techniques,
like bronchoalveolar lavage fluid aspirate, are
considered the ideal clinical materials, rather than
the throat swab, due to their higher positive rate on
the nucleic acid test (148). The diagnosis of COVID-
19 can be made by using upper-respiratory-tract
specimens collected using nasopharyngeal and
oropharyngeal swabs. However, these techniques are
associated with unnecessary risks to health care
workers due to close contact with patients (152).
Similarly, a single patient with a high viral load was
reported to contaminate an entire endoscopy room bytreated symptomatically along with oxygen therapy.
In such cases where the patients progress toward
respiratory failure and become refractory to oxygen
therapy, mechanical ventilation is necessitated. The
COVID-19-induced septic shock can be managed by
providing adequate hemodynamic support (299).
Several classes of drugs are currently being
evaluated for their potential therapeutic action
against SARS-CoV-2. Therapeutic agents that have
anti-SARS-CoV-2 activity can be broadly classified
into three categories: drugs that block virus entry
into the host cell, drugs that block viral replication as
well as its survival within the host cell, and drugs
that attenuate the exaggerated host immune response
(300). An inflammatory cytokine storm is commonly
seen in critically ill COVID-19 patients. Hence, they
may benefit from the use of timely anti-inflammation
treatment. Anti-inflammatory therapy using drugs
like glucocorticoids, cytokine inhibitors, JAK
inhibitors, and chloroquine/hydroxychloroquine
should be done only after analyzing the risk/benefit
ratio in COVID-19 patients (301). There have not
been any studies concerning the application of
nonsteroidal anti-inflammatory drugs (NSAID) to
COVID-19-infected patients. However, reasonablefunctions remain canceled in the affected cities, and
persons are asked to work from home (232). Hence,
it is a relief that the current outbreak of COVID-19
infection can be brought under control with the
adoption of strategic preventive and control
measures along with the early isolation of
subsequent cases in the coming days. Studies also
report that since air traffic between China and
African countries increased many times over in the
decade after the SARS outbreak, African countries
need to be vigilant to prevent the spread of novel
coronavirus in Africa (225). Due to fear of virus
spread, Wuhan City was completely shut down
(233). The immediate control of the ongoing
COVID-19 outbreaks appears a mammoth task,
especially for developing countries, due to their
inability to allocate quarantine stations that could
screen infected individuals’ movements (234). Such
underdeveloped countries should divert their
resources and energy to enforcing the primary level
of preventive measures, like controlling the entry of
individuals from China or countries where the
disease has flared up, isolating the infected
individuals, and quarantining individuals with
suspected infection. Most of the sub-Saharan Africanone of the most effective ones in facilitating
outbreak investigation and it also helps us to
derive a retrospective assessment of the
disease by estimating the attack rate.>
According to the recent literature, paired serum
samples can also help clinicians to diagnose
COVID-19 in case of false negative results in
NAAT essays.°” The literature also declared that
the commercial and non-commercial serological
tests are under consideration in order to
support the practising clinicians by assisting
them in diagnosis. Similarly, there are studies
published on COVID-19 which are comprised of
the serological data on clinical samples.*® 79
6.4 Viral sequencing
Apart from confirming the presence of virus in
the specimens, viral sequencing is also quite
useful in monitoring the viral genomic
mutations, which plays a very significant role in
influencing the performance of the medical
countermeasures inclusive of the diagnostic
re ee a corm pee a tee re a en i am oe a oeregularly.
History
Coronaviruses are enveloped positive
sense RNA viruses ranging from 60 nm
to 140 nm in diameter with spike like
projections on its surface giving ita
crown like appearance under the
electron microscope; hence the name
coronavirus [3]. Four corona viruses
namely HKU1, NL63, 229E and OC43
have been in circulation in humans,
and generally cause mild respiratory
disease.
There have been two events in the past
two decades wherein crossover ofemergence anda spread OL 2U1s Novel
coronavirus (2019-nCoV) or the severe
acute respiratory syndrome
coronavirus 2 (SARS-CoV-2). The virus
originated in bats and was transmitted
to humans through yet unknown
intermediary animals in Wuhan, Hubei
province, China in December 2019.
There have been around 96,000
reported cases of coronavirus disease
2019 (COVID-2019) and 3300 reported
deaths to date (05/03/2020). The disease
is transmitted by inhalation or contact
with infected droplets and the
incubation period ranges from 2 to 14
d. The symptoms are usually fever,
cough, sore throat, breathlessness,prevention and control measures, and patients for
clinical trials will not be available. The newly
developed drugs cannot be marketed due to the lack
of end users.
Vaccines
The S protein plays a significant role in the
induction of protective immunity against SARS-CoV
by mediating T-cell responses and neutralizing
antibody production (168). In the past few decades,
we have seen several attempts to develop a vaccine
against human coronaviruses by using S protein as
the target (168, 169). However, the developed
vaccines have minimal application, even among
closely related strains of the virus, due to a lack of
cross-protection. That is mainly because of the
extensive diversity existing among the different
antigenic variants of the virus (104). The
contributions of the structural proteins, like spike
(S), matrix (M), small envelope (E), and
nucleocapsid (N) proteins, of SARS-CoV to induce
protective immunity has been evaluated by
expressing them in a recombinant parainfluenza
virus type 3 vector (BHPIV3). Of note, the result
wad Awe Seek Tha. awamioann ar ht Tf ae ATCo YiLlVPlLULTlatiey VAlUIEILlo/ VALLES VVINIL
no clinical evidence of lower
respiratory tract involvement. In fact,
abnormal CT scans have been used to
diagnose COVID-19 in suspect cases
with negative molecular diagnosis;
many of these patients had positive
molecular tests on repeat testing [22].
Differential Diagnosis [21]
The differential diagnosis includes all
types of respiratory viral infections
[influenza, parainfluenza, respiratory
syncytial virus (RSV), adenovirus,
human metapneumovirus, non COVID-
19 coronavirus], atypical organisms
(mucnnlaema chlamydia) and hacterialCoV-2 strains, the 2019 Novel Coronavirus Resource
of China National Center for Bioinformation aligned
77,801 genome sequences of SARS-CoV-2 detected glob-
ally and identified a total of 15,018 mutations, including
14,824 single-nucleotide polymorphisms (BIGD)*".
In the S protein, four amino acid alterations, V483A,
L455I, F456V and G4765, are located near the binding
interface in the RBD, but their effects on binding to the
host receptor are unknown. The alteration D614G in
the S1 subunit was found far more frequently than other
S variant sites, and it is the marker ofa major subclade of
SARS-CoV-2 (clade G). Since March 2020, SARS-CoV-2
variants with G614 in the S protein have replaced the
original D614 variants and become the dominant form
circulating globally. Compared with the D614 variant,
higher viral loads were found in patients infected with
the G614 variant, but clinical data suggested no signif-
icant link between the D614G alteration and disease
severity’’. Pseudotyped viruses carrying the S protein
with G614 generated higher infectious titres than viruses
carrying the S protein with D614, suggesting the altera-
tion may have increased the infectivity of SARS-CoV-2
(REF). However, the results of in vitro experiments based
on pseudovirus models may not exactly reflect natural
infection. This preliminary finding should be validated
by more studies using wild-type SARS-CoV-2 variants to
infect different target cells and animal models. Whether
this amino acid change enhanced virus transmissibil-
ity is also to be determined. Another marker mutation(using suitable animal models) should be conducted
to evaluate the risk of future epidemics. Presently,
licensed antiviral drugs or vaccines against SARS-
CoV, MERS-CoV, and SARS-CoV-2 are lacking.
However, advances in designing antiviral drugs and
vaccines against several other emerging diseases will
help develop suitable therapeutic agents against
COVID-19 in a short time. Until then, we must rely
exclusively on various control and prevention
measures to prevent this new disease from becoming
a pandemic.Immunomodulatory agents. SARS-CoV-2 triggers a
strong immune response which may cause cytokine
storm syndrome. Thus, immunomodulatory agents
that inhibit the excessive inflammatory response may
be a potential adjunctive therapy for COVID-19.
Dexamethasone is a corticosteroid often used in a wide
range of conditions to relieve inflammation through
its anti-inflammatory and immunosuppressant effects.
Recently, the RECOVERY trial found dexamethasone
reduced mortality by about one third in hospitalized
patients with COVID-19 who received invasive mechan-
ical ventilation and by one fifth in patients receiving
oxygen. By contrast, no benefit was found in patients
without respiratory support'’.
Tocilizumab and sarilumab, two types of interleukin-6
(IL-6) receptor-specific antibodies previously used to
treat various types of arthritis, including rheumatoid
arthritis, and cytokine release syndrome, showed effec-
tiveness in the treatment of severe COVID-19 by atten-
uating the cytokine storm in a small uncontrolled trial’.
Bevacizumab is an anti-vascular endothelial growth
factor (VEGF) medication that could potentially reduce
pulmonary oedema in patients with severe COVID-19.
Eculizumab is a specific monoclonal antibody that
inhibits the proinflammatory complement protein C5.
Preliminary results showed that it induced a drop of
inflammatory markers and C-reactive protein levels.significant outbreak occurs due to a virus-like
SARS-CoV-2.
There is a steady increase in the reports of
COVID-19 in companion and wild animals around
the world. Further studies are required to evaluate
the potential of animals (especially companion
animals) to serve as an efficient reservoir host that
can further alter the dynamics of human-to-human
transmission (330). To date, two pet dogs (Hong
Kong) and four pet cats (one each from Belgium and
Hong Kong, two from the United States) have tested
positive for SARS-CoV-2 (335). The World
Organization for Animal Health (OIE) has confirmed
the diagnosis of COVID-19 in both dogs and cats
due to human-to-animal transmission (331). The
similarity observed in the gene sequence of SARS-
CoV-2 from an infected pet owner and his dog
further confirms the occurrence of human-to-animal
transmission (333), Even though asymptomatic,
feline species should be considered a potential
transmission route from animals to humans (326).
However, currently, there are no reports of SARS-
CoV-2 transmission from felines to human beings.
Based on the current evidence, we can conclude that
cats are susceptible to SARS-CoV-2 and can getVLU LAU UL SY UIP ly Lal Peels ile
mum signs and symptoms (82). Another s
ucted in South Korea, related to SARS-C
load, opined that SARS-CoV-2 kinetics
ficantly different from those of earlier rep
infections, including SARS-CoV (253). S/
-2 transmission can occur early in the
tion phase; thus, diagnosing cases and isol
ypts for this virus warrant different strat
those needed to counter SARS-CoV. Studie
red to establish any correlation between S/
-2 viral load and cultivable virus. Recogn
nts with fewer or no symptoms, along
1g modest detectable viral RNA in
harynx for 5 days, indicates the requireme
for assessing SARS-CoV-2 transmi:
mics and updating the screening procedur
linics (82).would be used for cell entry. '’
4.1 Virion structure and its
genome
Coronaviruses are structurally enveloped,
belonging to the positive-strand RNA viruses
category that has the largest known genomes of
RNA. The structures of the coronavirus are
more spherical in shape, but their structure has
the potential to modify their morphology in
response to environmental conditions, being
pleomorphic. The capsular membrane which
represents the outer envelope usually has
glycoprotein projection and covers the nucleus,
comprising a matrix protein containing a
positive-strand RNA. Since the structure
possesses 5'-capped and 3'-polyadenylated
ends, it remains identical to the cellular
mRNAs.'® The structure is comprised of
hemagglutinin esterase (HE) (present only in
some beta-coronaviruses), spike (S), small
membrane (E), membrane (M) and nucleocapsid
(N), as Shown (Figure 1). The envelopefew precautionary measures owing to the unknown
nature of this novel virus (36, 189). Presently, the
main course of treatment for severely affected
SARS-CoV-2 patients admitted to hospitals includes
mechanical ventilation, intensive care unit (ICU)
admittance, and symptomatic and _ supportive
therapies. Additionally, RNA synthesis inhibitors
(lamivudine and tenofovir disoproxil fumarate),
remdesivir, neuraminidase inhibitors, peptide (EK1),
anti-inflammatory drugs, abidol, and Chinese
traditional medicine (Lianhuaqingwen and
ShuFengJieDu capsules) could aid in COVID-19
treatment. However, further clinical trials are being
carried out concerning their safety and efficacy (7).
It might require months to a year(s) to design and
develop effective drugs, therapeutics, and vaccines
against COVID-19, with adequate evaluation and
approval from regulatory bodies and moving to the
bulk production of many millions of doses at
commercial levels to meet the timely demand of
mass populations across the globe (9). Continuous
efforts are also warranted to identify and assess
viable drugs and immunotherapeutic regimens that
revealed proven potency in combating other viral
acents similar to SARS-CoV-2.O the host cell. Cpeat | (ikK1) and he a
repeat 2 (HR2) can interact and form a six-helix
bundle that brings the viral and cellular membranes
in close proximity, facilitating its fusion. The
sequence alignment study conducted between
COVID-19 and SARS-CoV identified that the S2
subunits are highly conserved in these CoVs. The
HRI and HR2 domains showed 92.6% and 100%
overall identity, respectively (210). From these
findings, we can confirm the significance of
COVID-19 HRI and HR2 and their vital role in host
cell entry. Hence, fusion inhibitors target the HR1
domain of S protein, thereby preventing viral fusion
and entry into the host cell. This is another potential
therapeutic strategy that can be used in the
management of COVID-19. Other than the specific
therapy directed against COVID-19, general
treatments play a vital role in the enhancement of
host immune responses against the viral agent.
Inadequate nutrition is linked to the weakening of
the host immune response, making the individual
more susceptible. The role played by nutrition in
disease susceptibility should be measured by
evaluating the nutritional status of patients with
COVID-19 (205).epidemics (13). The most common symptoms
associated with COVID-19 are fever, cough,
dyspnea, expectoration, headache, and myalgia or
fatigue.
In contrast, less common signs at the time of
hospital admission include diarrhea, hemoptysis, and
shortness of breath (14). Recently, individuals with
asymptomatic infections were also suspected of
transmitting infections, which further adds to the
complexity of disease transmission dynamics in
COVID-19 infections (1). Such efficient responses
require in-depth knowledge regarding the virus,
which currently is a novel agent; consequently,
further studies are required.
Comparing the genome of SARS-CoV-2 with that
of the closely related SARS/SARS-like CoV
revealed that the sequence coding for the spike
protein, with a total length of 1,273 amino acids,
showed 27 amino acid substitutions. Six of these
substitutions are in the region of the receptor-binding
domain (RBD), and another six substitutions are in
the underpinning subdomain (SD) (16). Phylogenetic
analyses have revealed that SARS-CoV-2 is closely
related (88% similarity) to two SARS-like CoVs
derived from bat SARS-like CoVs_ (bat-SL-tested positive, signifying that the virus
originated from there [7]. The number
of cases started increasing
exponentially, some of which did not
have exposure to the live animal
market, suggestive of the fact that
human-to-human transmission was
occurring [8]. The first fatal case was
reported on 11th Jan 2020. The massive
migration of Chinese during the
Chinese New Year fuelled the epidemic.
Cases in other provinces of China,
other countries (Thailand, Japan and
South Korea in quick succession) were
reported in people who were returning
from Wuhan. Transmission to
healthcare workers caring for patientsNE, FEE NT ETT Romaine ne RUAN AT a ls ene
receptor and human proteases as entry activators; sub-
sequently it fuses the viral membrane with the cell mem-
brane and achieves invasion. Thus, drugs that interfere
with entry may be a potential treatment for COVID-19.
Umifenovir (Arbidol) is a drug approved in Russia and
China for the treatment of influenza and other respira-
tory viral infections. It can target the interaction between
the S protein and ACE2 and inhibit membrane fusion
(FIG. 5). In vitro experiments showed that it has activity
against SARS-CoV-2, and current clinical data revealed
it may be more effective than lopinavir and ritonavir in
treating COVID-19 (REFS'**’**). However, other clinical
studies showed umifenovir might not improve the prog-
nosis of or accelerate SARS-CoV-2 clearance in patients
with mild to moderate COVID-19 (REFS!7*!”5). Yet some
ongoing clinical trials are evaluating its efficacy for
COVID-19 treatment. Camostat mesylate is approved
in Japan for the treatment of pancreatitis and postoper-
ative reflux oesophagitis. Previous studies showed that it
can prevent SARS-CoV from entering cells by blocking
TMPRSS2 activity and protect mice from lethal infection
with SARS-CoV in a pathogenic mouse model (wild-
type mice infected with a mouse-adapted SARS-CoV
strain)'*%!”, Recently, a study revealed that camostat
mesylate blocks the entry of SARS-CoV-2 into human
lung cells”. Thus, it can be a potential antiviral drug
against SARS-CoV-2 infection, although so far there area
should be collected using Dacron or polyester
flocked swabs. It should be transported to the
laboratory at a temperature of 4°C and stored
in the laboratory between 4 and -70°C on the
basis of the number of days and, in order to
increase the viral load, both nasopharyngeal
and oropharyngeal swabs should be placed in
the same tube. Bronchoalveolar lavage and
nasopharyngeal aspirate should be collected in
a sterile container and transported similarly to
the laboratory by maintain a temperature of
4°C.
Sputum samples, especially from the lower
respiratory tract, should be collected with the
help of a sterile container and stored, whereas
tissue from a biopsy or autopsy should be
collected using a sterile container along with
saline. However, both should be stored in the
laboratory at a temperature that ranges
between 4 and -70°C. Whole blood for
detecting the antigen, particularly in the first
week of illness, should be collected in adiabetes, liver disease and
immunocompromising conditions and
pregnancy are risk factors for developing severe
illness. Management includes implementation
of prevention and control measures and
supportive therapy to manage the
complications, together with advanced organ
support.>”
Corticosteroids must be avoided unless
specified for chronic obstructive pulmonary
disease exacerbation or septic shock, as it is
likely to prolong viral replication as detected in
MERS-CoV patients.°°
12 EARLY SUPPORTIVE
THERAPY AND MONITORING
Management of patients with suspected or
documented COVID-19 consists of ensuring
appropriate infection control and supportive
care. WHO and the CDC posted clinical guidance
for COVID-19.%relaxation drugs to prevent ventilator-related lung
injury associated with human-machine
incoordination (122). The result obtained from a
clinical study of four patients infected with COVID-
19 claimed that combination therapy using
lopinavir/ritonavir, arbidol, and Shufeng Jiedu
capsules (traditional Chinese medicine) was found to
be effective in managing COVID-19 pneumonia
(193). It is difficult to evaluate the therapeutic
potential of a drug or a combination of drugs for
managing a disease based on such a limited sample
size. Before choosing the ideal therapeutic agent for
the management of COVID-19, randomized clinical
control studies should be performed with a sufficient
study population.
Antiviral Drugs
Several classes of routinely used antiviral drugs,
like oseltamivir (neuraminidase inhibitor), acyclovir,
ganciclovir, and ribavirin, do not have any effect on
COVID-19 and, hence, are not recommended (187).
Oseltamivir, a neuraminidase inhibitor, has been
explored in Chinese hospitals for treating suspected
COVID-19 cases, although proven efficacy against
SARS-CoV-2 is still lacking for this drug (7). The inatients with COVID-19 can be found on
1e WHO and CDC websites.®”
6 CONCLUSION
1e corona virus (COVID-19) spreads at an
arming rate all over the world. The outbreak
F the virus has confronted the world's
conomic, medical and public health
frastructure. Elderly and
nmunocompromised patients also are
isceptible to the virus's mortal impacts.
urrently, there is no documented cure for the
rus and no vaccine has been created, althoug
Ime treatment protocols have been promisin:
1erefore, the virus can be controlled with the
propriate prevention strategies. Also,
‘tempts have to be made to formulate
/stematic strategies to prevent such future
Onotic outbreaks,SARAS-CoV-2 strains available in the National
Center for Biotechnology Information and GISAID
databases were subjected to multiple-sequence
alignment and phylogenetic analyses for studying
variations in the viral genome (260). All the viral
strains revealed high homology of 99.99% (99.91%
to 100%) at the nucleotide level and 99.99%
(99.79% to 100%) at the amino acid level. Overall
variation was found to be low in ORF regions, with
13 variation sites recognized in la, 1b, S, 3a, M, 8,
and N regions. Mutation rates of 30.53% (29/95) and
29.47% (28/95) were observed at nt 28144 (ORF8)
and nt 8782 (ORF 1a) positions, respectively. Owing
to such selective mutations, a few specific regions of
SARS-CoV-2 should not be considered for designing
primers and probes. The SARS-CoV-2 reference
sequence could pave the way to study molecular
biology and pathobiology, along with developing
diagnostics and appropriate prevention and control
strategies for countering SARS-CoV-2 (260).
Nucleic acids of SARS-CoV-2 can be detected
from samples (64) such as bronchoalveolar lavage
fluid, sputum, nasal swabs, fiber bronchoscope brush
biopsy specimen, pharyngeal swabs, feces, blood,
and urine. with different levels of diagnosticV1 ULVSE UMUC, 4U70 ale Ul ClhiUCal
condition, 25% have recovered, and
3310 (3013 in China and 297 in other
countries) have died [2]. India, which
had reported only 3 cases till 2/3/2020,
has also seen a sudden spurt in cases.
By 5/3/2020, 29 cases had been
reported; mostly in Delhi, Jaipur and
Agra in Italian tourists and their
contacts. One case was reported in an
Indian who traveled back from Vienna
and exposed a large number of school
children in a birthday party at a city
hotel. Many of the contacts of these
cases have been quarantined.
These numbers are possibly an
wndaractimata nf tha infacted and daadHence, based on the viral load, we can quickly
evaluate the progression of infection (291). In
addition to all of the above findings, sequencing and
phylogenetics are critical in the correct identification
and confirmation of the causative viral agent and
useful to establish relationships with previous
isolates and sequences, as well as to know, especially
during an epidemic, the nucleotide and amino acid
mutations and the molecular divergence. The rapid
development and implementation of diagnostic tests
against emerging novel diseases like COVID-19
pose significant challenges due to the lack of
resources and logistical limitations associated with
an outbreak (155).
SARS-CoV-2 infection can also be confirmed by
isolation and culturing. The human airway epithelial
cell culture was found to be useful in isolating
SARS-CoV-2 (3). The efficient control of an
outbreak depends on the rapid diagnosis of the
disease. Recently, in response to the COVID-19
outbreak, 1-step quantitative real-time reverse
transcription-PCR assays were developed that detect
the ORFlb and N regions of the SARS-CoV-2
genome (156). That assay was found to achieve the
rapid detection of SARS-CoV-2. Nucleic acid-based(SADS-CoV) was first identified in suckling piglets
having severe enteritis and belongs to the genus
Alphacoronavirus (106). The outbreak was
associated with considerable scale mortality of
piglets (24,693 deaths) across four farms in China
(134). The virus isolated from the piglets was almost
identical to and had 95% genomic similarity with
horseshoe bat (Rhinolophus species) coronavirus
HKU2, suggesting a bat origin of the pig virus (106,
134, 135). It is also imperative to note that the
SADS-CoV outbreak started in Guangdong province,
near the location of the SARS pandemic origin
(134). Before this outbreak, pigs were not known to
be infected with bat-origin coronaviruses. This
indicates that the bat-origin coronavirus jumped to
pig by breaking the species barrier. The next step of
this jump might not end well, since pigs are
considered the mixing vessel for influenza A viruses
due to their ability to be infected by both human and
avian influenza A viruses (136).
Similarly, they may act as the mixing vessel for
coronaviruses, since they are in frequent contact with
both humans and multiple wildlife species.
Additionally, pigs are also found to be susceptible to
infection with human SARS-CoV and MERS-CoV,help us to control the spread of this virus. However,
this is both challenging as well as time-consuming
due to the present extent of infection (226). The
current scenario demands effective implementation
of vigorous prevention and control strategies owing
to the prospect of COVID-19 for nosocomial
infections (68). Follow-ups of infected patients by
telephone on day 7 and day 14 are advised to avoid
any further unintentional spread or nosocomial
transmission (312). The availability of public data
sets provided by independent analytical teams will
act as robust evidence that would guide us in
designing interventions against the COVID-19
outbreak. Newspaper reports and social media can be
used to analyze and reconstruct the progression of an
outbreak. They can help us to obtain detailed patient-
level data in the early stages of an outbreak (227).
Immediate travel restrictions imposed by several
countries might have contributed significantly to
preventing the spread of SARS-CoV-2 globally (89,
228). Following the outbreak, a temporary ban was
imposed on the wildlife trade, keeping in mind the
possible role played by wild animal species in the
origin of SARS-CoV-2/COVID-19 (147). Making a
permanent and bold decision on the trade of wildadvisable to distinguish COVID-19 from other
pneumonias such as mycoplasma pneumonia,
chlamydia pneumonia and bacterial
pneumonia.*° Several published pieces of
literature based on the novel coronavirus
reported in China declared that stool and blood
samples can also collected from the suspected
persons in order to detect the virus. However,
respiratory samples show better viability in
identifying the virus, in comparison with the
other specimens.**°
6.2 Nucleic acid amplification tests
(NAAT) for COVID-19 virus
The gold standard method of confirming the
suspected cases of COVID-19 is carried out by
detecting the unique sequences of virus RNA
through reverse transcription polymerase chain
reaction (RT-PCR) along with nucleic acid
sequencing if needed. The various genes of
virus identified so far include N, E, S (N:
nucleocapsid protein, E: envelope protein gene,
ee reed” Eee: ete: erecta: Senet (il STE ceeeciewcee IDRIA(244). Middle-aged and elderly patients with primary
chronic diseases, especially high blood pressure and
diabetes, were found to be more susceptible to
respiratory failure and, therefore, had poorer
prognoses. Providing respiratory support at early
stages improved the disease prognosis and facilitated
recovery (18). The ARDS in COVID-19 is due to the
occurrence of cytokine storms that results in
exaggerated immune response, immune regulatory
network imbalance, and, finally, multiple-organ
failure (122). In addition to the exaggerated
inflammatory response seen in patients with
COVID-19 pneumonia, the bile duct epithelial cell-
derived hepatocytes upregulate ACE2 expression in
liver tissue by compensatory proliferation that might
result in hepatic tissue injury (123).
CORONAVIRUSES IN ANIMALS AND
ZOONOTIC LINKS—A BRIEF
VIEWPOINT
Coronavirus can cause disease in several species
of domestic and wild animals, as well as humans
(23). The different animal species that are infected
with CoV include horses, camels, cattle, swine, dogs,
cats, rodents, birds, ferrets, minks, bats, rabbits,EL, NI TE: A ST | A Se Seen
4,170,424 cases and 287,399 deaths across the globe.
There is an urgent need for a rational international
campaign against the unhealthy food practices of
China to encourage the sellers to increase hygienic
food practices or close the crude live-dead animal
wet markets. There is a need to modify food policies
at national and international levels to avoid further
life threats and economic consequences from any
emerging or reemerging pandemic due to close
animal-human interaction (285).
Even though individuals of all ages and sexes are
susceptible to COVID-19, older people with an
underlying chronic disease are more likely to
become severely infected (80). Recently, individuals
with asymptomatic infection were also found to act
as a source of infection to susceptible individuals
(81). Both the asymptomatic and symptomatic
patients secrete similar viral loads, which indicates
that the transmission capacity of asymptomatic or
minimally symptomatic patients is very high. Thus,
SARS-CoV-2 transmission can happen early in the
course of infection (82). Atypical clinical
manifestations have also been reported in COVID-19
in which the only reporting symptom was fatigue.
Quch natiente may lack reeniratary cione earh aacdisease transmission are not yet identified (70).
Analysis of the initial cluster of infections suggests
that the infected individuals had a common exposure
point, a seafood market in Wuhan, Hubei Province,
China (Fig. 6). The restaurants of this market are
well-known for providing different types of wild
animals for human consumption (71). The Huanan
South China Seafood Market also sells live animals,
such as poultry, bats, snakes, and marmots (72). This
might be the point where zoonotic (animal-to-
human) transmission occurred (71). Although
SARS-CoV-2 is alleged to have originated from an
animal host (zoonotic origin) with further human-to-
human transmission (Fig. 6), the likelihood of
foodborne transmission should be ruled out with
further investigations, since it is a latent possibility
(1). Additionally, other potential and expected routes
would be associated with transmission, as in other
respiratory viruses, by direct contact, such as shaking
contaminated hands, or by direct contact with
contaminated surfaces (Fig. 6). Still, whether blood
transfusion and organ transplantation (276), as well
as transplacental and perinatal routes, are possible
routes for SARS-CoV-2 transmission needs to be
determined (Fig. 6).EE me ee
ritonavir with ribavirin had better
outcomes as compared to those given
ribavirin alone [15].
In the case series of 99 hospitalized
patients with COVID-19 infection from
Wuhan, oxygen was given to 76%, non-
invasive ventilation in 13%,
mechanical ventilation in 4%,
extracorporeal membrane oxygenation
(ECMO) in 3%, continuous renal
replacement therapy (CRRT) in 9%,
antibiotics in 71%, antifungals in 15%,
glucocorticoids in 19% and intravenous
immunoglobulin therapy in 27% [15].
Antiviral therapy consisting of
oseltamivir, ganciclovir and lopinavir-HHaGiriho LOOkeu Peel TUT LIke VibUo. LING VWISS,
there was no evidence of intrauterine infection
caused by vertical transmission in the SARS and
MERS epidemics.*?
The CDC asserts that infants born to mothers
with confirmed COVID-19 are considered
persons under investigation (PUI) and should be
temporarily separated from the mother and
isolated.*¢
7.1 Breastfeeding and infant care
The data available to date is limited and cannot
confirm whether or not COVID-19 can be
transmitted through breast milk.4° Assessing
the presence of COVID-19 in breast milk
samples from six patients showed negative
result.4> The CDC points out that in case of a
confirmed or suspected COVID-19 infection, the
decision of whether or how to start or continue
breastfeeding should be made by the mother in
collaboration with the family and healthcare
practitioners.*” Careful precautions need to be
talbaon Av tha mathar tan nroviant trancmitting tharanging from the common cold to severe and
ultimately fatal illnesses, such as SARS, MERS, and,
presently, COVID-19. SARS-CoV-2 is considered
one of the seven members of the CoV family that
infect humans (3), and it belongs to the same lineage
of CoVs that causes SARS; however, this novel virus
is genetically distinct. Until 2020, six CoVs were
known to infect humans, including human CoV 229E
(HCoV-229E), HCoV-NL63, HCoV-0C43, HCoV-
HKU1, SARS-CoV, and MERS-CoV. Although
SARS-CoV and MERS-CoV have resulted in
outbreaks with high mortality, others remain
associated with mild upper-respiratory-tract illnesses
(4).
Newly evolved CoVs pose a high threat to global
public health. The current emergence of COVID-19
is the third CoV outbreak in humans over the past 2
decades (5). It is no coincidence that Fan et al.
predicted potential SARS- or MERS-like CoV
outbreaks in China following pathogen transmission
from bats (6). COVID-19 emerged in China and
spread rapidly throughout the country and,
subsequently, to other countries. Due to the severity
of this outbreak and the potential of spreading on an
international scale, the WHO declared a globalanimal meats without any fear of COVID-19. The
Chinese government is encouraging people to feel
they can return to normalcy. However, this could be
a risk, as it has been mentioned in advisories that
people should avoid contact with live-dead animals
as much as possible, as SARS-CoV-2 has shown
zoonotic spillover. Additionally, we cannot rule out
the possibility of new mutations in the same virus
being closely related to contact with both animals
and humans at the market (284). In January 2020,
China imposed a temporary ban on the sale of live-
dead animals in wet markets. However, now
hundreds of such wet markets have been reopened
without optimizing standard food safety and
sanitation practices (286).
With China being the most populated country in
the world and due to its domestic and international
food exportation policies, the whole world is now
facing the menace of COVID-19, including China
itself. Wet markets of live-dead animals do not
maintain strict food hygienic practices. Fresh blood
splashes are present everywhere, on the floor and
tabletops, and such food customs could encourage
many pathogens to adapt, mutate, and jump the
species barrier. As a result, the whole world istwice in a volume of 200 to 250ml on the day of
collection (310). At present, treatment for sepsis and
ARDS mainly involves antimicrobial therapy, source
control, and supportive care. Hence, the use of
therapeutic plasma exchange can be considered an
option in managing such severe conditions. Further
randomized trials can be designed to investigate its
efficacy (311).
Potential Therapeutic Agents
Potent therapeutics to combat SARS-CoV-2
infection include virus binding molecules, molecules
or inhibitors targeting particular enzymes implicated
in replication and transcription process of the virus,
helicase inhibitors, vital viral proteases and proteins,
protease inhibitors of host cells, endocytosis
inhibitors, short interfering RNA _ (siRNA),
neutralizing antibodies, MAbs against the host
receptor, MAbs interfering with the S1 RBD,
antiviral peptide aimed at $2, and natural
drugs/medicines (7, 166, 186). The S protein acts as
the critical target for developing CoV antivirals, like
inhibitors of S protein and S cleavage, neutralizing
antibodies, RBD-ACE2 blockers, siRNAs, blockers
of the fusion core, and proteases (168).associated with known emerging viruses, higher
pathogenicity of a virus is often associated with
lower transmissibility. Compared to emerging
viruses like Ebola virus, avian H7N9, SARS-CoV,
and MERS-CoV, SARS-CoV-2 has relatively lower
pathogenicity and moderate transmissibility (15).
The risk of death among individuals infected with
COVID-19 was calculated using the infection
fatality risk (IFR). The IFR was found to be in the
range of 0.3% to 0.6%, which is comparable to that
of a previous Asian influenza pandemic (1957 to
1958) (73, 277).
Notably, the reanalysis of the COVID-19
pandemic curve from the initial cluster of cases
pointed to considerable human-to-human
transmission. It is opined that the exposure history of
SARS-CoV-2 at the Wuhan seafood market
originated from human-to-human transmission rather
than animal-to-human transmission (74); however, in
light of the zoonotic spillover in COVID-19, is too
early to fully endorse this idea (1). Following the
initial infection, human-to-human transmission has
been observed with a preliminary reproduction
number (Ro) estimate of 1.4 to 2.5 (70, 75), and
recently it is estimated to be 2.24 to 3.58 (76). InWIQespread around the elope. Ils COMMAS the
fact similar to the previous epidemics, including
SARS and MERS, that this coronavirus exhibited
potential human-to-human transmission, as it
was recently declared a pandemic by WHO.7°
Respiratory droplets are the major carrier for
coronavirus transmission. Such droplets can
either stay in the nose or mouth or enter the
lungs via the inhaled air. Currently, it is known
that COVID-19's transmission from one person
to another also occurs through touching either
an infected surface or even an object. With the
current scant awareness of the transmission
systems however, airborne safety measures
with a high-risk procedure have been proposed
in many countries. Transmission levels, or the
rates from one person to another, reported
differ by both location and interaction with
involvement in infection control. It is stated that
even asymptomatic individuals or those
individuals in their incubation period can act as
carrier of SARS-CoV2.77 78 With the data and
avidence nrovided hv the CDC the wealnucleocapsid. The nucleocapsids in CoVs are
arranged in helical symmetry, which reflects an
atypical attribute in positive-sense RNA viruses (30).
The electron micrographs of SARS-CoV-2 revealed
a diverging spherical outline with some degree of
pleomorphism, virion diameters varying from 60 to
140 nm, and distinct spikes of 9 to 12 nm, giving the
virus the appearance of a solar corona (3). The CoV
genome is arranged linearly as 5’-leader-UTR-
replicase-structural genes (S-E-M-N)-3’ UTR-
poly(A) (32). Accessory genes, such as 3a/b, 4a/b,
and the hemagglutinin-esterase gene (HE), are also
seen intermingled with the structural genes (30).
SARS-CoV-2 has also been found to be arranged
similarly and encodes several accessory proteins,
although it lacks the HE, which is characteristic of
some betacoronaviruses (31). The positive-sense
genome of CoVs serves as the mRNA and is
translated to polyprotein la/lab (ppla/lab) (33). A
replication-transcription complex (RTC) is formed in
double-membrane vesicles (DMVs) by nonstructural
proteins (nsps), encoded by the polyprotein gene
(34). Subsequently, the RTC synthesizes a nested set
of subgenomic RNAs (sgRNAs) via discontinuous
deere ete ti ng SOLvaccine for COVID-19 in partnership with the
Vaccine Research Center (VRC) of the National
Institute of Allergy and Infectious Diseases (NIAID),
part of the National Institutes of Health (NIH) (182).
By employing mRNA vaccine platform technology, a
vaccine candidate expressing SARS-CoV-2 spike
protein is likely to go through clinical testing in the
coming months (180). On 16 March 2020, Jennifer
Haller became the first person outside China to
receive an experimental vaccine, developed by
Moderna, against this pandemic virus. Moderna,
along with China’s CanSino Biologics, became the
first research group to launch small clinical trials of
vaccines against COVID-19. Their study is
evaluating the vaccine’s safety and ability to trigger
immune responses (296).
Scientists from all over the world are trying hard
to develop working vaccines with robust protective
immunity against COVID-19. Vaccine candidates,
like mRNA-1273 SARS-CoV-2 vaccine, INO-4800
DNA coronavirus vaccine, and adenovirus type 5
vector vaccine candidate (AdS5-nCoV), are a few
examples under phase I clinical trials, while self-
amplifying RNA vaccine, oral recombinant COVID-
19 vaccine, BNT162, plant-based COVID-19sputum, nasal swabs, fibrobronchoscope brush
biopsy specimens, pharyngeal swabs, feces, and
blood (246).
The presence of SARS-CoV-2 in fecal samples
has posed grave public health concerns. In addition
to the direct transmission mainly occurring via
droplets of sneezing and coughing, other routes, such
as fecal excretion and environmental and fomite
contamination, are contributing to SARS-CoV-2
transmission and spread (249-252). Fecal excretion
has also been documented for SARS-CoV and
MERS-CoV, along with the potential to stay viable
in situations aiding fecal-oral transmission. Thus,
SARS-CoV-2 has every possibility to be transmitted
through this mode. Fecal-oral transmission of SARS-
CoV-2, particularly in regions having low standards
of hygiene and poor sanitation, may have grave
consequences with regard to the high spread of this
virus. Ethanol and disinfectants containing chlorine
or bleach are effective against coronaviruses
(249-252). Appropriate precautions need to be
followed strictly while handling the stools of patients
infected with SARS-CoV-2. Biowaste materials and
sewage from hospitals must be adequately
disinfected. treated. and disposed of properly. TheSARS-CoV-2 RNA genome identified that the CoV
from Wuhan is a recombinant virus of the bat
coronavirus and another coronavirus of unknown
origin. The recombination was found to have
happened within the viral spike glycoprotein, which
recognizes the cell surface receptor. Further analysis
of the genome based on codon usage identified the
snake as the most probable animal reservoir of
SARS-CoV-2 (143). Contrary to these findings,
another genome analysis proposed that the genome
of SARS-CoV-2 is 96% identical to bat coronavirus,
reflecting its origin from bats (63). The involvement
of bat-derived materials in causing the current
outbreak cannot be ruled out. High risk is involved
in the production of bat-derived materials for TCM
practices involving the handling of wild bats. The
use of bats for TCM practices will remain a severe
tisk for the occurrence of zoonotic coronavirus
epidemics in the future (139).
Furthermore, the pangolins are an endangered
species of animals that harbor a wide variety of
viruses, including coronaviruses (144). The
coronavirus isolated from Malayan pangolins (Manis
javanica) showed a very high amino acid identity
with COVID-19 at E (100%), M (98.2%), NARI Can de given conservative mula therapy
only when there is no evidence of shock.
Empiric antimicrobial therapy must be started
to manage SARI. For patients with sepsis,
antimicrobials must be administered within 1
hour of initial assessments. The WHO and CDC
recommend that glucocorticoids not be used in
patients with COVID-19 pneumonia except
where there are other indications (exacerbation
of chronic obstructive pulmonary disease).°?
Patients’ clinical deterioration is closely
observed with SARI; however, rapidly
progressive respiratory failure and sepsis
require immediate supportive care
interventions comprising quick use of
neuromuscular blockade and sedatives,
hemodynamic management, nutritional
support, maintenance of blood glucose levels,
prompt assessment and treatment of
nosocomial pneumonia, and prophylaxis
against deep venous thrombosis (DVT) and
gastrointestinal (Gl) bleeding.©° Generally, such
natiente cive wavy tn their nrimary illnecc tonSeen a Ame Semester
It is unknown whether SARS-CoV-2 was transmitted
to humans through an intermediate host and which
animals may act as its intermediate host. Detection of
RaTG13, RmYNO2 and pangolin coronaviruses implies
that diverse coronaviruses similar to SARS-CoV-2 are
circulating in wildlife. In addition, as previous stud-
ies showed recombination as the potential origin of
some sarbecoviruses such as SARS-CoV, it cannot be
excluded that viral RNA recombination among different
related coronaviruses was involved in the evolution of
SARS-CoV-2. Extensive surveillance of SARS-CoV-2-
related viruses in China, Southeast Asia and other
regions targeting bats, wild and captured pangolins and
other wildlife species will help us to better understand
the zoonotic origin of SARS-CoV-2.
Besides wildlife, researchers investigated the sus-
ceptibility of domesticated and laboratory animals to
SARS-CoV-2 infection. The study demonstrated exper-
imentally that SARS-CoV-2 replicates efficiently in cats
and in the upper respiratory tract of ferrets, whereas
dogs, pigs, chickens and ducks were not susceptible to
SARS-CoV-2 (REF). The susceptibility of minks was
documented by a report from the Netherlands on an
outbreak of SARS-CoV-2 infection in farmed minks.
Although the symptoms in most infected minks were
mild, some developed severe respiratory distress
and died of interstitial pneumonia*. Both virologi-
oe eg we ee RB, ARstarted testing the efficacy of remdesivir in
treating the patients with COVID-19, especially
in Wuhan, where the outbreak occurred.
Chloroquine, which is an existing drug which is
currently used in treating malaria cases, was
given to more than 100 patients who were
affected with novel coronavirus to test its
efficacy.°*
A multicentric study was conducted in China to
test the effectiveness of remdesivir in treating
the patients with COVID-19. Thus, the results of
the clinical trial proved that remdesivir has a
considerably acceptable level of efficacy for
treating the patients with COVID-19. Therefore,
the National Health Commission of the People's
Republic of China decided to include remdesivir
in the Guidelines for the Prevention, Diagnosis
and Treatment of Pneumonia Caused by COVID-
19,62
Chloroquine and hydroxychloroquine are
existing anti-malaria drugs also given to more
than 20 natiante infarcted with COVIDN.19 invirus that has crossed the species barrier twice from
wild animals to humans during SARS and MERS
outbreaks (79, 102). The possibility of crossing the
species barrier for the third time has also been
suspected in the case of SARS-CoV-2 (COVID-19).
Bats are recognized as a possible natural reservoir
host of both SARS-CoV and MERS-CoV infection.
In contrast, the possible intermediary host is the
palm civet for SARS-CoV and the dromedary camel
for MERS-CoV infection (102). Bats are considered
the ancestral hosts for both SARS and MERS (103).
Bats are also considered the reservoir host of human
coronaviruses like HCoV-229E and HCoV-NL63
(104). In the case of COVID-19, there are two
possibilities for primary transmission: it can be
transmitted either through intermediate hosts, similar
to that of SARS and MERS, or directly from bats
(103). The emergence paradigm put forward in the
SARS outbreak suggests that SARS-CoV originated
from bats (reservoir host) and later jumped to civets
(intermediate host) and incorporated changes within
the receptor-binding domain (RBD) to improve
binding to civet ACE2. This civet-adapted virus,
during their subsequent exposure to humans at live
markets, promoted further adaptations that resultedappeared asymptomatic’. Another serological study
detected SARS-CoV-2 neutralizing antibodies in cat
serum samples collected in Wuhan after the COVID-19
outbreak, providing evidence for SARS-CoV-2 infection
in cat populations in Wuhan, although the potential
of SARS-CoV-2 transmission from cats to humans is
currently uncertain”.
Receptor use and pathogenesis
SARS-CoV-2 uses the same receptor as SARS-CoV,
angiotensin-converting enzyme 2 (ACE2)'™””. Besides
human ACE2 (hACE2), SARS-CoV-2 also recognizes
ACE2 from pig, ferret, rhesus monkey, civet, cat, pan-
golin, rabbit and dog'*5*. The broad receptor usage
of SARS-CoV-2 implies that it may have a wide host
range, and the varied efficiency of ACE2 usage in differ-
ent animals may indicate their different susceptibilities
to SARS-CoV-2 infection. The $1 subunit of a corona-
virus is further divided into two functional domains,
an N-terminal domain and a C-terminal domain.
Structural and biochemical analyses identified a
211 amino acid region (amino acids 319-529) at the S1
C-terminal domain of SARS-CoV-2 as the RBD, which
has a key role in virus entry and is the target of neu-
tralizing antibodies”! (FIG. 3a). The RBM mediates con-
tact with the ACE2 receptor (amino acids 437-507 of
SARS-CoV-2 S protein), and this region in SARS-CoV-2
ee Ee mre Na ws I rte aSDetWwee!T) & ANG ~/U UL
7 PREGNANCY
Currently, there is a paucity of knowledge and
data related to the consequences of COVID-19
during pregnancy.*°42 However, pregnant
women seem to have a high risk of developing
severe infection and complications during the
recent 2019-nCoV outbreak.*'-? This
speculation was based on previous available
scientific reports on coronaviruses during
pregnancy (SARS-CoV and MERS-CoV) as well as
the limited number of COVID-19 cases.41-43
Analysing the clinical features and outcomes of
10 newborns (including two sets of twins) in
China, whose mothers are confirmed cases of
COVID-19, revealed that perinatal infection with
2019-nCoV may lead to adverse outcomes for
the neonates, for example, premature labour,
respiratory distress, thrombocytopenia with
abnormal liver function and even death.“ It is
still unclear whether or not the COVID-19
infection can be transmitted during pregnancymust be on the look-out for the possible occurrence
of atypical clinical manifestations to avoid the
possibility of missed diagnosis. The early
transmission ability of SARS-CoV-2 was found to be
similar to or slightly higher than that of SARS-CoV,
reflecting that it could be controlled despite
moderate to high transmissibility (84).
Increasing reports of SARS-CoV-2 in sewage and
wastewater warrants the need for further
investigation due to the possibility of fecal-oral
transmission. SARS-CoV-2 present in environmental
compartments such as soil and water will finally end
up in the wastewater and sewage sludge of treatment
plants (328). Therefore, we have to reevaluate the
current wastewater and sewage sludge treatment
procedures and introduce advanced techniques that
are specific and effective against SARS-CoV-2.
Since there is active shedding of SARS-CoV-2 in the
stool, the prevalence of infections in a large
population can be studied using wastewater-based
epidemiology. Recently, reverse transcription-
quantitative PCR (RT-qPCR) was used to enumerate
the copies of SARS-CoV-2 RNA concentrated from
wastewater collected from a wastewater treatment
plant (327). The calculated viral RNA copy numbersSuspected cases should be referred
to government designated centres
for isolation and testing (in
Mumbai, at this time, it is Kasturba
hospital). Commercial kits for
testing are not yet available in
India.
Patients admitted with severe
pneumonia and acute respiratory
distress syndrome should be
evaluated for travel history and
placed under contact and droplet
isolation. Regular
decontamination of surfaces
should be done. They should be
tested for etiology using multiplex
NHnOD <«na.rnlen 2f 1 ln ~@ nt nn we nwnw. tt nus,Jarger quantities to meet clinical requirements. Hence,
they provide the possibility for the treatment and pre-
vention of COVID-19. The neutralizing epitopes of
these monoclonal antibodies also offer important infor-
mation for vaccine design. However, the high cost and
limited capacity of manufacturing, as well as the prob-
lem of bioavailability, may restrict the wide application
of monoclonal antibody therapy.
Vaccines
Vaccination is the most effective method for a long-term
strategy for prevention and control of COVID-19 in
the future. Many different vaccine platforms against
SARS-CoV-2 are in development, the strategies of which
include recombinant vectors, DNA, mRNA in lipid nano-
particles, inactivated viruses, live attenuated viruses and
protein subunits'”-"'. As of 2 October 2020, ~174 vac-
cine candidates for COVID-19 had been reported
and 51 were in human clinical trials (COVID-19
vaccine and therapeutics tracker). Many of these vac-
cine candidates are in phase II testing, and some have
already advanced to phase III trials. A randomize4
double-blinded phase II trial of an adenovirus type =
vectored vaccine expressing the SARS-CoV-2 S protein,
developed by CanSino Biologicals and the Academy of
Military Medical Sciences of China, was conducted in
603 adult volunteers in Wuhan. The vaccine has provedCOPONAVIEUS OULLICdk d PUDIIC Te alti) CLMerSele y OL UMer-
national concern'’. On 11 February, the International
Committee on Taxonomy of Viruses named the novel
coronavirus ‘SARS-CoV-2; and the WHO named the
disease ‘COVID-19 (REF.").
The outbreak of COVID-19 in China reached an
epidemic peak in February. According to the National
Health Commission of China, the total number of
cases continued to rise sharply in early February at an
average rate of more than 3,000 newly confirmed cases
per day. To control COVID-19, China implemented
unprecedentedly strict public health measures. The city
of Wuhan was shut down on 23 January, and all travel
and transportation connecting the city was blocked.
In the following couple of weeks, all outdoor activities
and gatherings were restricted, and public facilities were
closed in most cities as well as in countryside'*. Owing to
these measures, the daily number of new cases in China
started to decrease steadily”.
However, despite the declining trend in China, the
international spread of COVID-19 accelerated from late
February. Large clusters of infection have been reported
from an increasing number of countries'*. The high
ransmission efficiency of SARS-CoV-2 and the abun-
dance of international travel enabled rapid worldwide
spread of COVID-19. On 11 March 2020, the WHO
officially characterized the global COVID-19 out-
break as a pandemic”. Since March, while COVID-19