Biology Lecture2 2021
Biology Lecture2 2021
Environmental Biology
Marine environments
3.2-3.8% water salinity
Abiotic factors – factors that are not related to Biotic factors – caused by the presence of other
living organisms organisms.
Biotic factors
• Mutualism - is a long-term relationship between individuals of
different species where both individuals benefit.
e.g. Coral reefs are the result of mutualism between polyp’s of
corals and various types of algae which live inside them e.g.
dinoflagellates.
Most of corals obtain the majority of their energy and nutrients
(e.g. glucose, glycerol, and amino acids) from
photosynthetic unicellular algae that live within their tissues.
Algae benefit from a safe place to live and consume the polyp's
carbon dioxide, phosphates and nitrogenous waste.
Symbiont and host cells exchange organic and inorganic molecules
that enable the growth and proliferation of both partners.
(Libudzisz et al., 2007)
Factors influenced microbial growth in surface water
Grazer chain
Biotic factors
Example of realtionship between
organisms is a grazer chain.
Bacteria are component of grazer chain
in water environments.
Bacteria are decomposers. They
decompose dissolved organic matter
(DOM) - various organic substances to
simpler organic compunds).
They are consumed by eukaryotic
organisms (Protozoa) such as ciliates and
heterotrophic flagellates.
The numer of bacterial cells can be also
reduced by viruses – bacteriophages.
Viruses
The high diversity of aquatic environments and factors that act upon microorganisms
leads to high diversity of aquatic microorganisms.
Salmonellosis, sepsis
other salmonellae
Shigella dysenteriae Bacillary dysentery (pol. contact with ill people, insects,
czerwonaka bakteryjna): contaminated water and food
severe diarrhea and abdominal
pains
Vibrio cholerae O1 Cholera - profuse, watery oral route of infection, wastewater
diarrhea; vomiting; from household (domestic sewage)
rapid dehydration
(Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Bacterial diseases - examples
Pathogen Disease Environment, route of infection
(Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Viral diseases - examples
Pathogen Disease Environment, route of infection
(Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Viral diseases - examples
Pathogen Disease Environment, route of infection
Enteroviruses one of the most common causes of human generally the most numerous in
infections; cause broad spectrum of diseases: sewage, water resources and
a mild illness with fever, myocarditis, treated drinking-water supplies
meningoencephalitis,, herpangina, neonatal
multi-organ failure, polymyositis, chronic
fatigue
Hepatitis A virus hepatitis A Person-to-person spread is probably
the most common route of
transmission, but contaminated
food and water are important
sources of infection
Rotaviruses the most important single cause of infant Person-to-person transmission,
death in the world; cause 50–60% of cases of the inhalation of aerosols; ingestion
acute gastroenteritis of hospitalized children; of contaminated food or water
watery diarrhoea with fever, abdominal pain
and vomiting, dehydration and metabolic
acidosis
(Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Protozoan diseases - examples
Pathogen Disease Environment, route of infection
Acanthamoeba culbertsoni Granulomatous amoebic many types of aquatic environments,
encephalitis (pol. ziarniakowe including surface water, tap water,
zapalenie mózgu) swimming pools and contact lens
solutions
Helminths = parasitic worms, are large parasites, which can generally be seen with the
naked eye. Helminths can be divided into three groups: cestodes (tapeworms),
nematodes (roundworms), and trematodes (flukes). The helminths differ from other
infectious organisms in that they have a complex body structure. They are multicellular and
have partial or complete organsystems (e.g., muscular, nervous, digestive, and
reproductive) (Encyclopedia Britannica).
(Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Sources of fecal contamination
https://www.slideshare.net/fatooo1/microbial-source-tracking-markers-for-detection-of-fecal-contamination
Classification of diseases related with water
• Water-borne (waterborne): an enteric microorganism enters the water via fecal
contamination and is transmitted through ingestion of the contaminated water. Examples
include typhoid and cholera.
• Water-washed: an enteric microorganism is transmitted through ingestion of fecal
material, but the presence of fecal material is due to a lack of water for bathing, washing of
hands, utensils, and so on. In these cases, the pathogen is not present in the water, but on
hands or utensils, and transferred to water, food, and so on that is then consumed.
• Water-based: a worm spends a part of its life cycle in the aquatic environment. Water-
based infections are of two types: those acquired via ingestion (such as Dranunculus
medinensis), and those acquired by contact with the water and penetration of worm
through the skin (such as with Schistosoma, the causative agent of schistosomiasis).
Water-related: an insect that transmits the pathogen breeds in water. E.g. malaria.
Water-aerosol: used for diseases, that are transmitted via aerosols such as legionellosis.
„Engineered water system associated” – used for these disease agents that arise within
engineered systems (such as Legionella, which are naturally present in water but can
multiply to harmful levels in engineered water systems.” (Yates et al., 2016)
Sanitary Analysis of Water – Indicator Microorganisms
Indicator microorganisms are used in sanitary water quality assessment to
estimate the possibility of water contamination of human and animal
pathogens (especially from fecal wastes).
If these bacteria are found in drinking water there is high probability that
pathogens are also in this water.
Criteria for indicator microorganism:
1. The indicator bacterium should be suitable for analysis of all types of water:
tap, river, ground, impounded, recreational, estuary, sea, waste.
2. The indicator bacterium should be present whenever enteric pathogenes are
present.
3. The indicator bacterium should survive longer than the hardiest enteric
pathogen.
4. The indicator bacterium should not reproduce in the contaminated water
and produce an inflated value.
5. The method of indicator bacteria analysis should be easy to perform.
6. The assay procedure for the indicator should have great specificity. It means
that other bacteria should not give positive results. The procedure should
have high sensitivity and detect low level of the indicator.
7. The indicator should be harmless to humans.
8. The level of indicator bacterium in contaminated water should have some
direct relationship to the degree of fecal pollution.
Indicator bacteria use in sanitary analysis of drinking water:
• Coliforms – pol. bakterie z grupy coli
• Escherichia coli – pol. pałeczka okrężnicy
• Enterococcus faecalis - pol. enterokok, paciorkowiec kałowy
• Clostridium perfringens – pol. laseczka zgorzeli gazowej
• Taxonomic position:
Domain: Bacteria
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Enterobacteriales
Family: Enterobacteriaceae
(Maier et al., 2000; Prescott et al., 2004; Michałkiewicz and Fiszer, 2007;
Grabińska-Łoniewska and Siński, 2010; Sadowski and Whitman, 2011)
Sanitary Analysis of Water – Indicator Microorganisms
Escherichia coli
• Bacterium belongs to normal flora of
mammals’ intestine.
• Noted also in sewage, natural waters, sand,
sediment, soil.
• Gram-negative
• Facultative anaerobe
• Cells are 2-3 µm long
• 4-8 polar flagella https://pixnio.com/science/microscopy-images/escherichia-coli/morphologic-details-
displayed-by-a-single-gram-negative-escherichia-coli-bacterium
(Prescott et al., 2004; Michałkiewicz and Fiszer, 2007; Grabińska-Łoniewska and Siński, 2010; Sadowski and Whitman, 2011)
Sanitary Analysis of Water – Indicator Microorganisms
Escherichia coli
• This bacterium grows on various selective media:
m-Endo Agar
Escherichia coli
• This bacterium grows on different selective media:
Lactose TTC Agar with Tergitol™-7
Escherichia coli
• This bacterium grows on different selective media:
Chromogenic Coliform Agar (CCA) – blue-violet colonies
Sanitary Analysis of Water – Indicator Microorganisms
+ Fecal Contamination
(Prescott et al., 2004; Michałkiewicz and Fiszer, 2007; Grabińska-Łoniewska and Siński, 2010; Sadowski and Whitman, 2011)
Sanitary Analysis of Water – Indicator Microorganisms
Enterococcus faecalis
This bacterium is detected on selective medium:
• Slanetz and Bartley Agar – red-brown colonies
Sanitary Analysis of Water – Indicator Microorganisms
Clostridium perfringens
• Taxonomic position Domain: Bacteria
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Clostridiaceae https://pixnio.com/science/microscopy-images/clostridium-perfringens/photomicrograph-
reveals-clostridium-perfringens-grown-in-schaedlers-broth-using-gram-stain
Genus: Clostridium
Clostridium perfringens
This bacterium is detected on selective medium:
• m-CP agar – colonies that change their color from yellow to pink after put them under
the influence of ammonium hydroxide vapors
Quality of water intended for human consumption
International Guidelines and Law Regulations
• Council Directive 98/83/EC of 3 November 1998 on the quality of water intended for
human consumption (OJ L 330, 5.12.1998, p. 32)
(Dyrektywa Rady 98/83/WE w sprawie jakości wody przeznaczonej do spożycia przez
ludzi)
• This Directive has been changed in 2015 by the commission directive:
Commission Directive (EU) 2015/1787 of 6 October 2015 amending Annexes II and III to
Council Directive 98/83/EC on the quality of water intended for human consumption
(Dyrektywa Komisji (UE) 2015/1787 z dnia 6 października 2015 r. zmieniającej załączniki II
oraz III do dyrektywy Rady 98/83/WE w sprawie jakości wody przeznaczonej do spożycia
przez ludzi)
Sanitary Analysis of Drinking Water – Polish Law Regulations
In Poland , they are few law regulations related to drinking water quality.
The main acts are:
• The Act of June 7, 2001 on collective water supply and collective sewage disposal
[Dz.U. 2001 poz. 747]
(Ustawa z dnia 7 czerwca 2001 r. o zbiorowym zaopatrzeniu w wodę i zbiorowym
odprowadzaniu ścieków [Dz.U. 2001 poz. 747])
Domestic hot water should, in addition to the above-mentioned requirements meet the
requirements mentioned in Part A of Annex 5 to the Regulation.
Sanitary Analysis of Drinking Water – Polish Law Regulations
§ 3.3.:
The water and sewerage companies and entities providing or using water from an
individual intake as part of an economic activity or in public buildings, buildings of a
collective residence, or in food business
have to take all measures to ensure that the water meets the requirements specified for:
1) the indicator parameters specified in Part C of Annex No. 1 to the Regulation;
2) additional chemical requirements set out in Part D of Annex No. 1 to the Regulation;
3) radioactive substances specified in Annex 4 to the Regulation.
Sanitary Analysis of Drinking Water – Polish Law Regulations
Regulation of the Minister of Health of 7 December 2017. On the quality of water intended
for human consumption [Dz.U. 2017 poz. 2294, Annex 1, Part A, C]
Rozporządzenie Ministra Zdrowia z dnia 7 grudnia 2017 r. w sprawie jakości wody
przeznaczonej do spożycia przez ludzi [Dz.U. 2017 poz. 2294, Załącznik Nr 1 cz. A, C]
Annex 1 Part A Microbiological parameters
Table 1. Microbiological requirements
Parametric value
Parameter number of
microorganisms [CFU or sample volume [ml]
MPN]
Explanations:
1)
Individual bacteria <10 cfu (NPL) are allowed. If coliform bacteria are detected <10 CFU (NPL) / 100 ml, the E. coli and
enterococcus parameter should be examined in connection with § 21 para. 4 of the Regulation.
2
) It is recommended that the total number of microorganisms should not exceed:
- 100 cfu / 1 ml in water entering the water supply system,
- 200 cfu / 1 ml at consumer tap.
3)
It should be tested in water originating from surface and mixed intakes, and in the case of exceedance limit values,
the water should be tested to ensure that there is no risk to human health arising from presence of other pathogenic
microorganisms, e.g. Cryptosporidium.
Sanitary Analysis of Drinking Water – Polish Law Regulations
Cryptosporidium
• Single-celled, obligatory intestinal parasitic protist
• Parasite of mammals, birds, reptiles, fishes
C. parvum - ruminants, dogs, cats, rabbits, rodents, people
C. hominis - people and monkeys
• Oocysts are commonly present in natural waters and soil, also
in food and surfaces contaminated with excrement of animals
and infected people; in drinking-water supplies. https://pixnio.com/science/microscopy-images/cryptosporidiosis-
cryptosporidium/stool-smear-micrograph-revealing-cryptosporidium-
• Thick-walled oocysts with a diameter of 4–6 μm are shed in parvum-as-the-cause-of-this-patients-cryptosporidiosis
faeces,
• Cryptosporidium
In raw sewage: 14 000 oocysts per liter
In surface waters 5 800 oocysts per liter
• Humans and livestock, particularly young animals,
are the most significant source of infections.
Calves can excrete 1010
oocysts per day. Infected
people 10 oocysts per day (also 1-4 week after
12
(Matuszewska, 2007; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Sanitary Analysis of Drinking Water – Polish Law Regulations
Annex 5 Microbial requirements that should be met by hot water, minimum frequency of
hot water sample collection and procedures depending on the results of bacteriological
testing
Explanations:
1)
It should be examined in samples of hot water collected in enterprises of the entity performing
medical activities such as stationary and round-the-clock health services and in buildings of collective
residence and in public buildings, in which water and air aerosol are produced during their use.
2)
The value of the parameter applies to enterprises of the entity performing medical activities, such as
stationary and round-the-clock health services, in which patients with immunodeficiency reside,
including those treated by immunosuppressive treatment.
Sanitary Analysis of Drinking Water – Polish Law Regulations
Legionella pneumophila
• Taxonomic position
Domain: Bacteria
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Legionellales
Family: Legionellaceae https://pl.m.wikipedia.org/wiki/
Plik:Legionella_pneumophila_(SEM).jpg
Genus: Legionella
(Stypułkowska-Misiurewicz and Pancer, 2002; Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth
edition incorporating the first addendum. WHO; 2017)
Legionella pneumophila
• Legionella has been noted mainly in humans (rarely in animals: guinea-pigs, rats,
mice, monkeys)
• Their reservoir of bacteria are various man-made hot-water systems such as:
• water cooling systems,
• cooling towers,
• swimming pools,
• jacuzzi,
• air conditioning systems,
• It can grow in all types of devices producing droplets of water:
• showerheads and sinks,
• fountains,
• garden sprinklers,
• car washes,
• dental office water e.g. used for dental turbines
• hot springs.
(Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Legionella pneumophila
• The special type of risk are water systems in hotels, sanatoriums, retirement homes,
hospitals, sports venues.
(Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Legionella pneumophila - Pathogenicity for humans
• In 1976 Legionella was first detected as human pathogen after outbreak of pneumonia
in a hotel in the United States (Philadelphia).
• It was during veterans of the United States (called American Legion) meeting.
• Bacteria grew and spread in the hotel's hot water installation.
• As a result of the disease:
221 people (guests and hotel staff) became ill with a disease similar to
pneumonia.
34 people died
After histopathological examination it was discovered that Legionella caused diseases and
death of veterans and hotel staff.
The name of bacterium – Legionella and the name of disease – Legionnaires’ disease
come form the name of organization associating veterans of US Marines – American
Legion.
(Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Legionellosis – infection route
• Legionella pneumophila is relative intracellular pathogen.
• In the environment Legionella is able to enter a viable but non-culturable (VBNC) stage
- this is a dormant stage.
• The bacteria can also live in biofilms and grow within Protozoa cells (amoeba cells).
• During infection bacteria get f.e. with the aerosol to the host's alveoli where are
phagocytized by macrophages.
• They can survive inside the cells of macropages. They replicate and breakdown tchem,
what leads to spreading of infection. Spreading occurs through the bloodstream and
lymphatic system.
• The genus Legionella includes more than 48 species. The species L. pneumophila is
responsible for more than 98% of the Legionnaires disease cases, other species such as
L. anisa, L. micdadei, L. dumoffii or L. feeleii are rarely pathogenic in humans, although
they relatively frequently colonize water distribution systems.
• Most susceptible to legionellosis are elderly, smokers, diabetes and
immunocompromised persons.
(Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Sanitary Analysis of Drinking Water – Polish Law Regulations
Legionella pneumophila - Pathogenicity for humans
• Legionellosis is the name used for all types of infections caused by Legionella.
• According to the International Classification of Diseases and Health Problems adopted by
Poland legionellosis should be registered depending on disease form as: A48.1
legionnaires‘ disease or A48.2 legionnaires' disease without symptoms of pneumonia
(Pontiac fever). Also extrapulmonary forms of legionellosis are observed.
A48.1 Legionnaires' disease
• This is the type of a heavy, often bilateral pneumonia.
• The incubation period for the infection is between 2 to 10 days.
• The course can be varied - from the uncomplicated form of inflammation of lungs for
severe respiratory failure
• The disease starts suddenly, in the form of non-specific symptoms such as headaches
and muscles ache, lack of appetite, bad mood, general weakness. Then a high fever
comes in (above 40ºC) with chills and a dry cough. Sometimes cough with blood,
shortness of breath, chest pain and difficulties in breathing.
(Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Sanitary Analysis of Drinking Water – Polish Law Regulations
(Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Sanitary Analysis of Drinking Water – Polish Law Regulations
(Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Sanitary Analysis of Drinking Water – Polish Law Regulations
(Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
Sanitary Analysis of Drinking Water – Polish Law Regulations
• Replace the oldest sections of the installation (the older the installation is, the higher
the probability of Legionella is)
Sanitary Analysis of Drinking Water – Polish Law Regulations
• Ultraviolet rays
(Steinert et al., 2002; Grabińska-Łoniewska and Siński, 2010; Guidelines for drinking-water quality: fourth edition incorporating the first addendum. WHO; 2017)
References
• Grabińska-Łoniewska A., Siński E., 2010. Mikroorganizmy chorobotwórcze i potencjalnie
chorobotwórcze w ekosystemach wodnych i sieciach wodociągowych. Wydawnictwo „Seidel-
Przywecki” Sp. z o.o., Warszawa.
• Guidelines for drinking-water quality: fourth edition incorporating the first addendum. Geneva:
World Health Organization; 2017.
• Libudzisz Z., Kowal K., Żakowska Z., (eds.), 2007. Mikrobiologia techniczna. Mikroorganizmy i
środowiska ich występowania. Tom 1., PWN, Warszawa.
• Maier R. M., Pepper I. L., Gerba C. P., 2000. Environmental Microbiology, UK, Academic Press.
• Matuszewska 2007. Protozoan pathgens of genus Cryptosporidium and Giardia Part I:
Occurence in water environment and health risk. ROCZN. PZH 58, NR 3, 569-577.
• Michałkiewicz M., Fiszer M., 2007. Biologia sanitarna – ćwiczenia laboratoryjne, Poznań,
Wydawnictwo Politechniki Poznańskiej.
• Prescott L. M.; Harley J.P., Klein D.A., 2004. Microbiology 6th edition. McGraw-Hill Science.
• Sadowski M.J., Whitman R.L. (eds.), 2011. The Fecal Bacteria. American Sciety for Microbiology,
Washington, DC.
• Steinert M., Hentschel U., Hacker J., 2002. FEMS Microbiology Reviews 26: 149-162.
• Stypułkowska-Misiurewicz H., Pancer K., 2002. Legioneloza – nowe zagrożenie w Polsce. Przegl.
Epidemiol.56: 567-76.
• Yates M.V., Nakatsu C.H.,. Miller R.V., Pillai S.D. (eds.) 2016. Manual of Environmental
Microbiology, Fourth Edition, DOI: 10.1128/9781555818821