Bio Molecules
Bio Molecules
H—C—OH H—C—H
Thus, glucose is epimeric with D-(+)-mannose and                       Some important monosaccharides are as follows
D-(+)-galactose as shown below
          CHO                     CHO                      CHO         1. Glucose (C6 H12O6 )
                                                                       Glucose is a monosaccharide, aldohexose and reducing
      H—C—OH                  H—C—OH               HO—C—H
                                                                       sugar. It is found in ripe grapes (hence named
     HO—C—H                 HO—C—H                 HO—C—H              grape-sugar), honey and most sweet fruits. It is also a
                                                                       normal constituent of blood and found in the urine of
     HO—C—H                   H—C—OH                   H—C—OH          diabetics.
      H—C—OH                  H—C—OH                   H—C—OH          The blood normally contains 65 to 110 mg of glucose per
                                                                       100 mL (hence named blood sugar). In the combined state,
          CH2OH                  CH2OH                     CH2OH       it occurs in glucosides, disaccharides and polysaccharides.
      D-(+)-galactose         D-(+)-glucose            D-(+)-mannose
                        Epimers of glucose                             Methods of Preparation
                                                                       (i) From sucrose Cane sugar (sucrose) on acid hydrolysis
Ring Structure of Monosaccharides                                          in the presence of alcohol, gives a mixture of glucose
The ring form of monosaccharides is favoured in aqueous                    and fructose.
solution. Structures of pentoses and hexoses are cyclic                                              H+
involving five or six membered rings containing an                               C12H 22O11 + H 2O ¾® C6H12O6 +C6H12O6
                                                                                   Sucrose                Glucose      Fructose
oxygen atom.
                                                                            Glucose being less soluble in alcohol than fructose
The five membered ring containing an oxygen atom                            separates out by crystallising on cooling (fractional
because of its similarity with furan is called the furanose                 crystallisation).
form and the six membered ring containing an oxygen
atom because of its similarity with pyran is called the                (ii) From starch Glucose is obtained on a large scale by
pyranose form.                                                              the hydrolysis of starch with dilute H 2SO4 or dilute
                                                                            HCl under pressure.
                                                                                                           H+
                                                                               (C6H10O5 )n + nH 2O ¾¾¾¾¾¾® nC6H12O6
                                                                                                     393 K, 2-3 atm
                        O                      O                                  Starch                                 Glucose
                     Furan                 Pyran                             After neutralisation with CaCO3 and filteration,
During ring formation, reaction between an aldehyde and                      filterate is decolourised by boiling with animal charcoal
an alcohol forms a hemiacetal. A hemiketal is an analogous                   and then concentrated under reduced pressure and
                                                                             finally crystallised.
product formed by reaction of a ketone with an alcohol.
                                                                       (iii) From lactose or maltose
Formation of a hemiacetal or a hemiketal,
                                                                                                     H+
                                                           OR                     C12H 22O11 + H 2O ¾® C6H12O6 + C6H12O6
                                      H+
                     C==O + ROH ¾®                 C                               Lactose                Glucose     Galactose
            R¢                                             OH                                       H+
                                                                                  C12H 22O11 + H 2O ¾® 2C6H12O6
(where, R¢ = H or R)                                                               Maltose                Glucose
If aldehyde (i.e. R¢ = H) ¾® hemiacetal,
                                                                       Physical Properties of Glucose
If ketone (i.e. R¢ = R ) ¾® hemiketal
                                                                         l   Glucose is a white crystalline solid (m.p. 146°C). It
As a result of ring formation                                                also occurs in the form of monohydrate, C6H12O6 × H 2O
Carbon number 1-(C1) becomes asymmetric (chiral) and                         (m.p. 86°C).
hence, monosaccharides exist in two stereoisomeric forms,                l   Glucose is readily soluble in water, sparingly soluble
a and b-form. In the a-form, the —OH at C1 is towards right                  in alcohol and insoluble in ether.
while in the b-form, the —OH at C1 is towards left.
                                                                         l   It is optically active and dextrorotatory (hence named
                 H     OH       HO   H
                                                                             dextrose). It shows mutarotation (The change in
                     C— —OH group  C—                                        specific rotation of an optically active compound in
                              position
                        O                          O                         solution with time, to an equilibrium value is called
                 a-position                   b-position                     mutarotation)
A pair of stereoisomers which differ in configuration only               l   It has a very sweet taste but about three fourth as
around C1 carbon are called anomers and the C1 is called                     sweet as sucrose (cane-sugar).
the anomeric carbon (or glycosidic carbon).
1128                                                                                                    JEE Main Chemistry
                                                                        H
Chemical Reactions of Glucose
                                                                                                        CH N.NHC6H5
(i) Reduction                                                           C     O
                                                                                                          H
   (a) On reduction with NaBH 4 or Na-Hg, glucose yields                              H2N. NH. C6H5     C
                                                                        CHOH                              OH
       sorbitol.                                                                          –H2O
                                                                                                       (CHOH)3
          CHO                       CH 2OH                             (CHOH)3
          ½               NaBH4 or  ½                                                                   CH2OH
         (CHOH)4 + 2[H] ¾¾¾¾¾® (CHOH)4                                  CH2OH
                         Na-Hg /H2O                                     Glucose                       Glucose phenyl hydrazone
          ½                         ½
          CH 2OH                    CH 2OH
            Glucose                            Sorbitol
                                                                                   CH     NH                CH—NH
   (b) On reduction with HI and red P, it gives a mixture                                                                    NH.C6H5
       of n-hexane and 2-iodohexane.                               C6H5NH. NH2 C         O                  C—O—H
                                                                        –H2O                   –C6H5NH2 (CHOH)
                       Red P/HI                                                   (CHOH)3                     3
        C6H12O6 ¾¾¾¾® CH3CH 2CH 2CH 2CH 2CH3
         Glucose           D               n -hexane
                                                                                   CH2OH                    CH2OH
                                           +
                                                                                  Imino ketone         Hydrogen bonded
                                     CH3CHICH 2CH 2CH 2CH3                                              intermediate
                                             2-iodohexane                                                CH     N.NH.C6H5
                                                                   CH       NH
(ii) Reaction with hydroxylamine Glucose forms glucose
                                                                   C    N.NHC6H5 C6H5NH. NH2 C                 N.NH.C6H5
     oxime with hydroxylamine.
                                                                                             –NH3       (CHOH)3
               CHO                       CH == NOH                (CHOH)3
               ½      NH2OH              ½
              (CHOH)4 ¾¾¾®              (CHOH)4                    CH2OH                                 CH2OH
                       –H2O
               ½                         ½                                                                Glucosazone
               CH 2OH                    CH 2OH                                                     (yellow crystalline solid)
                 Glucose              Glucose oxime
                                                                  Osazone formation is given by only a-hydroxy
(iii) Reaction with hydrogen cyanide An addition product,         aldehyde and a-hydroxy ketones. (glucose, fructose
      glucose cyanohydrin is formed.                              and mannose form the same osazone, i.e. glucosazone).
                                   HO     CN                      Glucosazone is a yellow crystalline solid, sparingly
             CHO                        CH                        soluble in water and has sharp melting point. Due to
                                                                  these properties, it is used to identify glucose.
            (CHOH)4        HCN         (CHOH)4                (v) Oxidation
             CH2OH                      CH2OH                    (a) With bromine water, glucose gives gluconic acid.
             Glucose              Glucose cyanohydrin                    CHO                   COOH
                                                                         ½             Br2-H2O ½
(iv) Reaction with phenyl hydrazine When treated with                   (CHOH)4 + [O] ¾¾¾¾® (CHOH)4
     equimolar quantities of phenyl hydrazine, glucose                   ½                     ½
     yields a phenyl hydrazone.                                          CH 2OH                CH 2OH
        H                                     H                             Glucose                          Gluconic acid
                                                                (b) Glucose on oxidation with Fehling’s solution and
        C    O                                C   N.NH.C6H5         Tollen’s reagent gives coloured precipitate and
                   + H2N.NH.C6H5                                    gluconic acid.
       (CHOH)4                        –H2O (CHOH)
                                                 4
                                                                    CHO                      COOH
        CH2OH                                 CH2OH
                                                                    ½                        ½
        Glucose                              Glucose phenyl        (CHOH)4 + Cu2+ or Ag+ ¾® (CHOH)4 + Cu2O ¯
                                               hydrazone
                                                                    ½                        ½        Red ppt.
    However, when glucose is warmed with excess of                  CH 2OH                   CH 2OH     or
    phenyl hydrazine a crystalline product, glucosazone             Glucose                               Gluconic acid
                                                                                                                             Ag ¯
    is formed.                                                                                                          Silver mirror
Bimolecules                                                                                                                            1129
  (c) On oxidation with strong acids like nitric acid,                    (x) Reaction with metallic hydroxides Glucose reacts
      glucose gives glucaric (saccharic) acid.                                with metallic hydroxides like Ca(OH)2 , Ba(OH)2 ,
                                                 COOH                         Sr(OH)2 etc., to form metallic glucosates, which are
          CHO
          ½                                      ½                            soluble in water.
                         HNO3
         (CHOH)4 + 3[O] ¾¾¾®                    (CHOH)4                            C6H11O5 — OH + H O — Ca — OH ¾®
                          D
          ½                                      ½
          CH 2OH                                 COOH                                                    C6H11O5 — O — Ca — OH + H 2O
            Glucose                          Glucaric acid
                                            (saccharic acid)                                                   Calcium glucosate
                                                                         (xi) Reaction with periodic acid Periodic acid splits
  (vi) Reaction with acetyl chloride Glucose reacts with
                                                                              glucose into formic acid and formaldehyde.
       acetyl chloride to form glucose penta-acetate.
        CHO                            CHO                                    CHO
        ½                       ZnCl 2 ½                                      ½      HIO 4 or H5 IO 6
       (CHOH)4 + 5CH3COCl ¾¾® (CHOCOH3 )4 + 5HCl                             (CHOH)4 ¾¾¾¾¾¾® 5HCOOH + HCHO
                                                                                                      Formic acid
        ½                              ½                                      ½                                   Formaldehyde
                                                                                                                                   CH2OH
                                CH3COCH2CH2COOH + H2O
                                                                                                                               D-(–)-fructose
                                        Laevulic acid
1130                                                                                                           JEE Main Chemistry
The two cyclic hemiacetal forms of glucose differ only in                Chemical Properties
the configuration of the hydroxyl group at C-1 called
                                                                         The chemical reactions of fructose are almost similar to
anomeric carbon. Such isomers, i.e. a-form and b-form
are called anomers.                                                      those of glucose. The only different behaviour are
                                                                         oxidation and reduction. These are as follows
Sametimes, glucose is illustrated as a chair form
because it is a more accurate representation of                          (i) Reduction On reduction with NaBH 4 or Na-Hg/H 2O,
bond-angles of the molecule, (Reeves, 1950).                                 fructose forms a mixture of sorbitol and mannitol.
          H                            H                                             CH2OH                             CH2OH              CH2OH
            6                            6
        HO—
          4
            CH2OH                    HO—
                                       4
                                         CH2OH                                       C    O                        H—C—OH              HO—C—H
              5   O                            O                                               + 2[H]                              +
                 H                         5 2
                                              H
                     1                           1                                  (CHOH)3                           (CHOH)3            (CHOH)3
             H 2 —H                       H      —OH
            3                            3
         HO—    HO                    HO—    HO                                      CH2OH                             CH2OH              CH2OH
                    OH                           H                                                                     Sorbitol           Mannitol
                                                                                     Glucose
              H                             H
               a-anomer                    b-anomer (stable)              Note The reduction of glucose with NaBH4 forms D-sorbitol
                     Anomer forms of glucose                              while that of fructose forms a mixture of D-sorbitol and
In b-anomer, the glycosidic hydroxyl group is equatorial                  D-mannitol (they differ in configuration).
and as a general rule, the configuration with greatest                   (ii) Oxidation Fructose is not oxidised by mild oxidising
number of large groups in equatorial orientation is the                       agent like Br2 water. However, when oxidised with
most stable form.                                                             nitric acid, fructose is converted into a mixture of
Thus, b-anomer predominates in the equilibrium mixture.                       trihydroxy glutaric, glycollic and tartaric acids.
The boat form of glucose is unstable.                                                                                COOH
                                                                                                  Oxidative
                                                                                                  cleavage
2. Fructose                                                                                                         (CHOH)2 + CO2 + H2O
                                                                                CH2OH             at C1-C2
The important ketohexose is D-(–)-fructose (also known as                       C   O                                CH2OH
laevulose). In the free state, it is present along with                                   HNO3                      Trihydroxy
honey and most sweet fruits (berries, melons etc.), hence                      (CHOH)3                             glutaric acid
                                                                                                  Oxidative                            COOH
named as fruit sugar.                                                                                                CH2OH
                                                                                CH2OH             cleavage
In the combined state, fructose is present in sucrose and                                                                      + (CHOH)2 + H2O
                                                                                Glucose             at C2-C3         COOH
insulin. It is the sweetest monosaccharide.                                                                        Glycollic acid CH2OH
Some methods of preparation of fructose are                                                                                       Tartaric acid
(i) By hydrolysis of cane sugar with dilute acids.                           Since a mixture of acids each containing fewer
                          H+ , D                                             carbon atoms than fructose is obtained, the carbonyl
       C12H22O11 + H2O ¾¾®           C6 H12O6       +     C6 H12O6
      Cane sugar
                                                                             group in fructose must be a ketonic group.
                                   D-(+)- glucose       D-(–)-fructose
     The solution having equal molecules of D-glucose and                (iii) Reducing nature Unlike ketones, fructose can reduce
     D-fructose is termed as invert sugar and the process is                   Fehling’s solution and Tollen’s reagent. This is
     known as inversion.                                                       probably due to formation of an equilibrium mixture
(ii) By calcium fructosate                                                     of glucose, mannose and fructose in alkaline solution.
     C6 H11 O5 —O—Ca—OH + CO2 ¾® C6 H12O6 + CaCO3                        (iv) Action of conc. HCl
                                             Fructose                               HCl
(iii) From insulin                                                       C6H12O6 ¾¾® H3C × CO × CH 2 × CH 2 × COOH + HCOOH
                                         HCl                             Glucose                     Laevulinic acid                    Formic acid
                   (C6 H10 O5 )n + nH2O ¾¾®  nC6 H12O6
                                                                                                                                              + H 2O
     (Insulin is a polysaccharide which occurs in dahlia                 Structure of Fructose
     tubers and Jerusalem artichokes).
                                                                         Some major structure of fructose are discussed below
Physical Properties                                                      1. Open Chain Structure
 l   Fructose is colourless crystalline compound
                                                                         The open chain structure of fructose may be represented
     (m.p. 102°).
                                                                         as below
 l   It is soluble in water and insoluble in benzene and                                             *         *         *
     ether.                                                                             CH 2 — C— CH — CH — CH — CH 2
                                                                                        ½     ½½ ½     ½    ½    ½
 l   It is less soluble in water than glucose. Like glucose,                                   O OH OH OH OH
                                                                                        OH
     it also shows mutarotation.
1132                                                                                                                                                         JEE Main Chemistry
The structure contains three asymmetric carbon atoms                                                  Oligosaccharides : General Features
and eight optically active forms but only six are
known. The configuration of D-(–)-fructose is                                                         Molecules of these carbohydrates are made up of a small
                                              1                                                       number of monosaccharide units joined together by
                                             CH2OH
                                                                                                                       æ ½        ½ ö
                                         2
                                             C        O                                                                ç              ÷
                                                                                                      glycosidic bonds ç — C— O — C— ÷ . Glycosidic bonds are
                                          3                                                                            ç ½        ½ ÷ø
                                      HO—C—H                                                                           è
                                          4                                                           established during the condensation of monosaccharides.
                                       H—C—OH                                                         The process is called dehydration.
                                          5
                                       H—C—OH                                                         These are further classified into disaccharides,
                                         6                                                            trisaccharides, tetrasaccharides etc., depending upon the
                                             CH2OH                                                    number of monosacharides, they peroxide on hydrolysis.
                                       D-(–)-fructose
                                                                                                      Some important oligosaccharides are as follows
2. Cyclic Structure
Fructose also has a cyclic structure in aqueous
                                                                                                      1. Sucrose (C12 H 22O11 )
solution, i.e. intramolecular hemiketal. It also exhibit                                              It is commercial sugar, which is also called cane sugar
mutarotation.                                                                                         because most of it is obtained from sugarcane (16-20%). It
                                                  1                                                   is also present in sugarbeet (10-15%), pineapple (10-12%),
                                                  CH2OH                                       1       apricot banana, mango and honey. It is formed by
    1
HOH2C        2           OH                   2                           HO          2       CH2OH   condensation of one molecule each of glucose and fructose.
             C                                    C    O                           C
                                                                                                                        6                                        6
         3                                    3                                   3                                    CH2OH                                    CH2OH
    HO—C—H                             HO—C—H                             HO—C—H                                      5                                          5
                                                                                                                    H      O H                                H     O H
         4                    O               4                                   4               O                   H                                         H
      H—C—OH                            H—C—OH                              H—C—OH                                  4         1                               4        1
                                                                                                                       OH H                                     OH H
         5                                    5                                   5                                HO 3      OH                              HO
      H—C—OH                            H—C—OH                              H—C—OH                                                  2                            3            2
         6
             CH2
                                              6
                                                  CH2OH                           6                                     OH OH                    Glucosidic H                HO
                                                                                   CH2                            a-D-(–)-gluco                  linkage
   a-D-(–)-fructose                    a-D-(–)-fructose                   b-D-(–)-fructose                          pyranose
     [a]D = –21°                         [a]D = –92°                        [a]D = –133°                                    +                                                     O
                                                                                                                                                      –H2O
                              Cyclic structure fructose                                                             6           O                            6           O
                                                                                                             HOH2C                      OH            HOH2C
3. The Haworth Projection Formulae                                                                                 5
                                                                                                                        H       HO
                                                                                                                                        2                    5
                                                                                                                                                                 H       HO
                                                                                                                                                                                   2
     Due to the presence of fructose, invert sugar is sweeter         3. Maltose (C12 H 22O11 )
     than sucrose. Invert sugar is used to coat chocolate.
                                                                      It is obtained by partial hydrolysis of starch by diastase
     Sweetening power of common sugars : Fructose >                   enzyme present in malt, i.e. sprouted barley seeds
     Invert sugar > Sucrose > Glucose > Maltose > Lactose             (hence named maltose or malt sugar).
 l   On heating (200°C), sucrose melts and on cooling                                                                 Diastase
     forms a glassy yellow solid known as barley sugar.                         2(C6H10O5 )n + nH 2O ¾¾¾® nC12H 22O11
     When heated above its melting point, it loses water                                                                                   Maltose
     and gives a brown substance known as caramel. On
     further heating sucrose gets charred to almost pure
                                                                      Properties
     carbon (sugar charcoal).                                           l   Maltose is a white crystalline solid (with m.p.
 l   Sucrose on acetylation gives sucrose octaacetate. This                 160°-165°C), soluble in water and dextrorotatory.
     shows the presence of eight —OH groups in sucrose.                                6                                       6
                                                                                       CH2OH                                   CH2OH
 l   Sucrose does not form oxime or osazone. It shows the                             5                                        5
                                                                                  H    O H                                 H    O H
     absence of    C ==O group.
                                                                                  4
                                                                                    H     1                                4
                                                                                                                             H     1
 l   Sucrose does not reduces Tollen’s reagent and                                  OH H                                     OH H
     Fehling’s solution. It shows the absence of —CHO                            HO      OH                               HO      OH
                                                                                      3             2                          3            2
     group in sucrose.                                                                H             OH                         H           OH
 l   Fermentation In the presence of yeast, it yields                           a-D-(+)-glucopyranose                  a-D-(+)-glucopyranose
     ethanol and carbon dioxide.                                                              a-glycosidic          –H2O
                             Invertase C H O + C H O                                          linkage
         C12H22O11     + H2O ¾¾¾¾®      6 12 6  6 12 6                                          6                                  6
                                       Glucose Gructose                                        CH2OH                               CH2OH
                              Zymase
                   C6 H12O6 ¾¾¾® 2C2H5 OH + CO2                                                5  O H                          5      O H
                   Glucose                   Ethanol                                      H                                H
                                                                                          4
                                                                                               H     1                     4
                                                                                                                                   H     1
 l   With conc. H 2SO4 , sucrose loses water to give sugar                                     OH H                                OH H
                                                                                      HO                          O                     OH
     charcoal (charring of sugar).                                                             3                               3
                                                                                                         2                                     2
            C12H22O11 + H2SO4 ¾® 12C + 11H2O                                                   H         OH                        H       OH
                       C + 2H2SO4 ¾® 2SO2 + CO2 + 2H2O                               Representation of a-1,4-glycosidic linkage
     A small amount of sulphurdioxide is also observed                  l   Maltose is a reducing sugar. It reduces Fehling’s
     due to reduction of the acid.                                          solution Tollen’s reagent, it forms an oxime and an
                                                                            osazone and undergoes mutarotation. It indicates that
2. Lactose (C12 H 22O11 )                                                   at least one aldehyde group is free in it.
It occurs in the milk of all animals (milk-sugar). It is a                  (Free aldehyde group can be produced at C-1 of second
white crystalline solid (with m.p. 203°C), soluble in water                 glucose in solution which shows reducing property).
and is dextrorotatory. It is hydrolysed by dilute acid or
enzyme lactose, to an equimolar mixture of D-(+)-glucose              Example 1. What are the functional groups present in the
and D-(+)-galactose. Lactose is a reducing sugar, forms               structure of maltose ?                                                    (JEE Main 2020)
an oxime and osazone and undergoes mutarotation. It                         (a) One ketal and one hemiketal
gets hydrolysed by emulsin also, an enzyme which                            (b) One acetal and one ketal
specifically hydrolyses b-1,4-glycosidic linkage.                           (c) One acetal and one hemiacetal
                   6                                                        (d) Two acetals
                   CH2OH                             H       OH
                   5                                 3       2        Sol. (c) The functional groups present in the structure of maltose is
             HO           O OH                  HO               OH   one acetal and one hemiacetal. It is illustrated in following structure.
                   H                                 OH      H
               4               1         +       4                1                  CH2OH Acetal                     CH2OH
                   OH     H                          H
               H
                   3       2
                               H                 H
                                                      5    OH                                        O H                               O
                                                                                 H                                H                        H
                   H      OH                           CH2OH                          H                               H
                                                     6
             b-D-(+)-galactose
                                                 b-D-(+)-glucose                      OH             H                OH               H
              b-glycosidic linkage       –H2O                                  HO                             O                            OH
                   CH2OH                         H       OH
                          O                                                           H              OH               H                OH Hemiacetal
             HO                      O                       OH
                   H                             OH                                                       Maltose
                                                         H
                   OH H                          H
               H               H             H
                                                     O H
                                                                      Polysaccharides : General Features
                                                                      It composed of large number of monosaccharides units
                   H      OH                     CH2OH
                               (+)-lactose                            joined together by glycosidic linkages. These are used as
             Representation of b-1,4-glycosidic linkage
                                                                      food storage or structural material.
1134                                                                                                                                                                         JEE Main Chemistry
Some important polysaccharide are as follows                                        branched chain polymer of a-D-glucose units in which chain is
                                                                                    formed by C1-C4 glycosidic linkage whereas branching occurs by
1. Starch                                                                           C1-C6 glycosidic linkage.
It is a polymer of a-glucose. It is found in cereals,                                                                                           6
roots, tubers etc. It is the most important dietary                                                          CH2OH                              CH2OH                             CH2OH
source. It consists of two cmponents, i.e. amylose                                                   H                O     H           H                   O        H        H        O    H
                                                                                                                                                    5
and amylopectin. Amylose is water soluble                                                                    H                                  H                                 H
                                                                                                     4                        1         4                            1        4             1
component which constitutes about 15-20% of                                                  –               OH       H                         OH          H                     OH   H        –
                                                                                                 O                                  O                                    O                      O
starch. It is a long unbranched chain with                                                                                                          3        2
200-10000 a-D-( + )-glucose units held by C1-C4                                                              H        OH                        H           OH                    H    OH
glycosidic linkage.                                                                                                           a-link                                 a-link
                                 4        H                1       4
                                                                            H                            1
                         –                OH          H                     OH           H                   a-link
                             O                                 O
                                          H           OH                    H            OH
                                                                                                     O       Branch at C6
                                                                                                     6
                                                           CH2OH                                     CH2                                    CH2OH
                                                      H                O    H            H               5       O    H         H                       O        H
                                                      4    H                    1        4
                                                                                                     H                1         4           H                    1
                                              –            OH          H                             OH          H                          OH          H                –
                                                  O                                 O                                     O                                          O
                                                           H           OH                            H           OH                         H           OH
                                                                                a-link                                a-link
                                                                                                     Amylopectin
                                          Representation of glycosidic linkage in amylopectin and amylose
2. Cellulose                                                                        3. Glycogen
It occur exclusively in plants. It is predominant
constitutent of cell wall of plant cells. It is a                                   It is known as animal starch because its structure is similar to
straight chain polysaccharide composed of                                           amylopectin and is more highly branched. It is stored in animal
b-D-glucose units joined by glycosidic linkage                                      body and present in liver, muscles and brain. In need of glucose,
between C1 of the glucose and C4 of next glycose.                                   enzymes break the glycogen down to glucose. It is also found in
                                                                                    yeast and fungi.
                                          HOH2C
                                                               O
                                                                       O
                                                                                    B. a-Amino Acids
                                                                                    Bifunctional organic compounds containing carboxylic and
                                                      OH                            amino group either at the same carbon atom or at the nearby
                HOH2C                     O                                         carbon atoms are called amino acids. These are the monomers
                                                                                    of proteins. Usually, amino acids have primary amino group but
                                     O
                                                               OH                   proline is a secondary amine.
                                                                                    Natural proteins can be broken down into about 20 different
                      OH                                                            a-amino acids (19 a-amino acids and 1 a-imino acid). These
HOH2C             O                                                                 molecules differ in the nature of the R-group attached to the
            O                                                                       alpha carbon. R-group can be
                                     OH
                                                                                     l  An aliphatic side chain
     OH                                                         b-links              l  A hydroxyl group containing side chain
O                                                                                    l  A sulphur atom containing side chain
                                                                                     l  A side chain containing acidic (carboxylic) group or amides
             OH                                                                         group
                       Cellulose                                                     l  A side chain containing basic groups
Bimolecules                                                                                                                                                      1135
 l   A side chain containing aromatic ring
                                                       Amino acids, their Symbols and Structures
                                                    Group I Side Chains with Aliphatic Carbon Chains
H CH3 CH CH2 CH
OH OH CH3 SH CH2
                                                                                                                                            S       CH2
                 Serine (Ser)                          Threonine (Thr)                         Cysteine (Cys)                     Methionine (Met)
                                                  Group IV-Side Chains With Acid Groups or their Amides
                       C                                           C                                 CH2                                    CH2
                  O         O–                                O         NH2                          C                                      C
                                                                                                 O         O–                         O          NH2
                                                                                                                                      CH
                                                                                     OH                                           N
                                                                                                                                  H
                  Phenylalanine (Phe)                                         Tyrosine (Tyr)                                   Tryptophan (Trp)
                                                                        Group VII-Imino Acids
                                              H                                                                            H
                                                          –
                             H2N              C     COO                                                          H2N       C     COO–
CH2 C
                                                                                                                    OH     OH
                                    Proline (Pro)                                                               4-hydroxyproline (Hyp)
1136                                                                                                                      JEE Main Chemistry
the same isoelectric point. Neutral amino acids have           Transport protein     Haemoglobin     Transportation of respiratory
                                                                                                     gases (O2 and CO2 )
isoelectric point from pH 5.5 to 6.3 (e.g. glycine = 6.1).
                                                               Contractile protein   Active myosin   Responsible for contraction of
Acidic amino acids have isoelectric point around 3                                                   muscles
(e.g. aspartic acid = 3) and basic amino acids have            Protective proteins   Antibodies      Complex with foreign proteins
isoelectric points from pH 7.6 to 10.8 (e.g. Lysine = 9.7)     Hormones              Insulin         Regulate glucose metabolism
Amino acids usually shows their lowest solubility in a         Toxins                Snake venom     Incapcitate prey
solution at the isoelectric point. Since, there is a highest
concentration of dipolar ion. This property has been used      Proteins are important components of most foods. In the
in the separation of different amino acids obtained from       digestive system, proteins are broken down into small
the hydrolysis of proteins.                                    molecules called a-amino acids. These molecules are
                                                               reassembled in cells to form other proteins required by
a-amino acids have protonated —NH3+ group which
                                                               the body.
exerts a strong electron withdrawing inductive effect
(-I effect) and therefore, increases acid strength. That’s
why the carboxylic acid groups of the amino acids are so
                                                               Features of Proteins
much more acidic (pK a = 2) than a carboxylic acid such as
                                                                l    A pure protein is tasteless, odourless and colourless.
acetic acid (pK a = 4.76 ). If an amino acid has amino group         Chromoproteins are coloured. Most of proteins are
and one carboxyl group such as alanine, it has two pK a              hydrophilic. They do not have sharp melting point.
values.                                                         l    All proteins on partial hydrolysis give peptide of
The isoelectric point of this amino acid has the average             varying molecular masses, which on complete
value of the both pK a values.                                       hydrolysis gives a-amino acids.
                                                                             Hydrolysis              Hydrolysis
             H3C—CH—COOH ¬ pKa = 2.34                               Proteins ¾¾¾® Peptides ¾¾¾¾® a-amino-acids
                    +                                           l    All the proteins are laevorotatory due to the presence
                    NH3             pKa = 9.69                       of asymmetric carbon in a-amino acids.
1138                                                                                                      JEE Main Chemistry
     protein) which carries oxygen, there are 574 amino                      l    Although, the hydrogen bond is fairly weak, their
     acid units in a definite sequence but the replacement                        large number stabilises the structure. The imino
     of only one a-amino acid results in defective                                acid, proline along with amino acids glycine,
     haemoglobin. This is the cause of a disease, called                          serine do not fit into the normal a-helix. They
     sickle cell anaemia.                                                         disrupt the a-helical structure and cause sharp
     In the patients suffering from this disease, the                             bends in the direction of the chain. They are called
     defective haemoglobin precipitates causing the cells to                      helix-breakers. a-helix is found in both fibrous and
     sickle shaped and sometimes even makes them burst                            globular proteins. Fibrous proteins such as a-keratin
     leading ultimately to death. Normal haemoglobin                              in hair, nail, wool, skin, beaks, claws and myosin in
     has–Val–His–Leu–Thr–Pro–Glu–Lys.                                             muscle have a-helix structure.
     On the other hand, sickle cell haemoglobin structure.                   l    Globular proteins also contain segments of a-helix,
                                                                                  because of the a-helical structure, human hair fibres
     Val–his–Leu–Thr–Pro–Val–Glu–Lys structure.
                                                                                  are stretchable and elastic to some extent. When hair
                                                                                  is stretched, the H-bonds are broken but when the
2. Secondary Structure                                                            stretching force is removed, the H-bonds reformed
Most of the long polypeptide chain are folded or coiled to                        again.
produce specific three-dimensional structures. These are
                                                                            (ii) b-conformation (b-pleated sheet) it results from
called secondary structure and give idea about shape                             hydrogen bonding between two peptide chains. In this
of the conformation of the protein molecule. Depending                           conformation, the polypeptide chains lie side by side
upon the size of R groups, three major types of secondary                        in a zig-zag manner with alternate —R groups on the
structure (a-helix, b-conformation, b-pleated sheet and                          same side situated at fixed distances apart. The
triple-helix) have been identified.                                              chains may be parallel or anti-parallel.
                             H                Hydrogen bond                      In a parallel chain b-pleated sheet, the N-atoms point
                                                    H                            in the same direction, while in the antiparallel chain
                H2 N         C            C                                      b-pleated sheet, alternate chains are oriented in the
                                                          N
                             R1           O                                      same direction. The anti-parallel structure permits
                    H             H               H    H      C   R2             maximum hydrogen bonding. The b-conformation is
                                  C       C       N
                                                                                 found in fibrous proteins.
                    N
                                  R4
                                                                             l    Keratin protein (present in hair) has parallel
                         H                O
                C                                 C                               b-pleated sheet structure while the silk protein,
                                                              C   H
                         C         N                                              fibroin has anti-parallel b-pleated sheet structure.
                O                                 O    R5
                     H R3          H H
                                                       H      C                                               CCH                          CCH
                     C       C            N                       O
                                                      C                           Hydrogen
                 H R7        O                H R8                                bond
                                      H                                                                             C                  N
                 N                            N
                         C            C
                                    R6                                                                         N                            C
                         O
                                 a-helix
                                                                                                                          R groups
                     a-helix structure of proteins                                                                 HCC                CCH
(iii) Triple helix In this structure, three loosely coiled             heterogeneous quaternary structure, e.g.
      helical polypeptide chains can wind around each other            haemoglobin which consists of two a chains and two b
      to form a stiff cable. It is very strong and relatively rigid.   chains.
      The triple helix is found mainly in collagen, the major                                       Polypeptide chain
      structural protein of skin, bones, teeth, tendons and
      cartilage. It can be seen that the triple helix structure is                                                           e
                                                                                                                        em
      more extended and stabilised by hydrogen bonds                                                               Ha
Myoglobin
                                                                                                              Ha
                                                                                                               em
                                                                                       –N
                                                                                                                 e
                                                                                       –C a-helix
(iii)Derived proteins These are obtained by the                   Hence, mercury and lead are poisonous to the human
     hydrolysis of higher proteins with acids, alkalies or        system as they denature proteins in the body.
     enzymes.                                                     The first aid treatment for a person who has ingested
     e.g. Peptones, proteases and denatured proteins.             a heavy metal is to give a large dose of egg whites or
                                                                  milk, both of which are rich in proteins. The proteins
Denaturation of Proteins                                          in them form complexes with the heavy metals in the
A protein that is in a biologically inactive form is said to      stomach, temporarily preventing absorption of the
be in a denatured state. The conformational change that           metals into the blood. The patient should later be
produces this state is called denaturation of proteins.           given an emetic to get rid of the poison.
Denatured proteins usually forms large aggregates that
are precipitated from solution. This process is called         Test for Proteins
coagulation.                                                   With the help of following tests, presence of proteins can
During denaturation no peptide bonds are broken, i.e.          be detected by these methods.
chemical composition or primary structure remains                (i) Biuret test Protein is gently warmed with
unaffected.                                                          10% solution of NaOH and then a drop of dil. CuSO4
                                                                     solution is added. Formation of reddish-violet
                                                                     colour indicates the presence of peptide linkage
                                                                                            O
                                                                                            ½½
                                                                                         (— C— NH—).
                                                                      This test is also given by the compound biuret,
                                                                      obtained by urea on heating.
                                                                (ii) Xanthoprotic test Certain proteins give yellow
           Disulphide bridges                                         colour with conc. HNO3 . This yellow colour is same
                                                                      which is formed on skin when skin comes in contact
                                                                      with conc. HNO3 .
The relatively weak, non-covalent interactions are
                                                               (iii) Millon’s test When Millon’s reagent (a solution of
disrupted in the denaturation of a protein.
                                                                      mercurous and mercuric nitrates in nitric acid
Some following factors can bring about the denaturation               containing some nitrous acid) is added to a protein
of proteins are                                                       solution, a white precipitate is obtained. On heating,
 (i) Heat When you fry or boil an egg, you bring about a              it turns to red precipitate or colour.
     denaturation of egg proteins. That’s the reason why       (iv) Ninhydrin test When a protein is boiled with a
     bacteria are destroyed at high temperatures that exist           dilute solution of ninhydrin, a violet colour is
     in an autoclave is that their proteins are denatured.            obtained. This test is given by all proteins.
 (ii) Exposure to organic solvents Organic solvents             (v) Nitroprusside test When sodium nitroprusside is
     such as ethanol and rubbing alcohol can denature                 added to proteins containing —SH group, a violet
     proteins. Alcohol is rubbed on the skin, before an               colour is obtained.
     injection to kill surface bacteria by denaturing
     bacteria proteins and preventing infection.
                                                               5. Enzymes
(iii) Exposure to acid and bases Strong acids and
                                                               Kuhne (1878) coined the term enzyme. Buchner in
     bases can denature proteins by disrupting salt bridges
                                                               (1897, 1903) isolated enzyme (including zymase from yeast
     and hydrogen bonds. Prolonged treatment with strong
                                                               for the first time). Sunner found that enzymes are
     acids will bring about hydrolysis of peptide bonds of a
                                                               proteinaceous. He crystallised the first enzyme, urease
     protein.
                                                               from jack bean.
(iv) Exposure to salts of heavy metal ions Cation of
                                                               An enzyme is a specialised protein produced within
     metals such as Hg2+ , Ag+ and Pb2+ interfere with the
                                                               an organism which is capable of catalysing a
     disulphide bonds and salt bridges that stabilise the      specific chemical reaction. Since, the enzymes act as
     protein structure and bring about denaturation.           catalyst, they are sometimes referred to as biocatalysts.
1142                                                                                                                JEE Main Chemistry
A catalyst alters the rate of a chemical reaction,               (v)Isomerases These are catalyse reactions which bring
usually without undergoing any change itself. In this                about intramolecular rearrangement of atoms in
respect an enzyme differs from a normal catalyst. The                substrates.
enzyme may participate in a reaction by combining               (vi) Ligases (Synthetases) These are catalyse reactions in
with the substrate. Ultimately, it is set free.                      which the pyrophosphate bond of ATP is broken down and
Some examples of enzymes along with the reaction,                    linkage takes place between two molecules. These
catalyse are given in tabulated form below                           enzymes form the following bonds : C—O, C—S, C—N and
        Enzymes and their Reaction Catalyse                          C—C.
     Enzymes                   Reaction catalyse                             Types of Reactions Shown by Enzymes
 Amylase              Starch to n glucose                          Enzymes                                      Reactions
 Maltase              Maltose to (2) glucose                    Oxidoreductases     Oxidation-reduction reactions
 Lactase              Lactose to glucose + galactose            Transferases        Group transfer reactions
 Invertase            Sucrose to glucose + fructose             Hydrolases          Hydrolytic reactions (addition of H2O)
 Pepsin               Proteins to amino acids                   Lyases              Addition or loss of groups to double bonds
 Trypsin              Polypeptides to a-amino acids             Isomerases          Isomeration reactions
 Urease               Urea to ammonia + CO2                     Ligases             Synthesis by condensation of two groups requiring ATP
 Nuclease             DNA, RNA to nucleotides
 Carbonic anhydrase   H2CO3 to H2O + CO2
 DNA polymerase       Deoxyribonucleotide triphosphate to DNA
                                                                In another system of classification, the name of the enzyme is
 RNA polymerase       Ribonucleotide triphosphate to RNA
                                                                derived from its substrate.
                                                                e.g. Carbohydrases, proteases, dehydrogenases, oxidases,
                                                                decarboxylases, hydrases, isomerases, transferases, amidases
Nomenclature of Enzymes                                         and esterases.
Enzymes are generally named by adding ase to the
root indicating the substrate on which the enzyme               Mechanism of Enzyme Action
acts. This system was provided by Duclau (X)                    Lock and key and induced fit models both explain the
(1883). Thus, fumarase catalyses the conversion of              enzyme specificity and its mechanism.
fumaric acid to malic acid.
                                                                In 1894, Fischer suggested a lock and key concept to
Classification of Enzymes                                       explain the working of an enzyme. According to this
                                                                mechanism, an enzyme catalysed reaction involves the
The International Union of Biochemistry
                                                                following steps.
report of 1962 (revised in 1964) contains a scheme
for the classification of enzymes. Enzymes have been             Step 1 Binding of enzyme (E ) to the substrate (S) to form an
divided into following six groups, viz.                                 enzyme substrate complex.
  (i) Oxidoreductases These are include a large                                       E + S ¾® (ES )
      number of enzymes (221 are listed). These are              Step 2 Product formation in the complex.
      bring about the main energy yielding reactions                              (ES )     ¾®         EP
                                                                                  Enzyme substrate          Enzyme product
      of living tissue. Oxidoreductases include                                       complex
      oxidases and dehydrogenases. It act by
                                                                 Step 3 Release of the product from the enzyme.
      transferring electrons and hydrogen ions.
                                                                                    EP      ¾® E + P
(ii) Transferases These are concerned with the                                     Enzyme-product          Enzyme     Product
      transfer of a group of atoms from one molecule to                       Key                                Enzyme
      another. Oxidoreductases and transferases
      together represent over half the enzymes
      known.                                                                          Substrate Enzyme                    Substrate
                                                                              E+S                               ES complex
(iii) Hydrolases Complex molecules undergo cleavage,
      and the elements of H 2O are added across the bond
      cleaved by the action of hydrolases.
(iv) Lyases These may work in two ways.
      A group of atoms may be removed from the                                                                                  Product
      substrate leaving double bonds, or groups may                     Enzyme Substrate             Enzyme          Enzyme
                                                                        molecule molecule           substrate
      be added to double bonds without hydrolysis,                                                   complex
      oxidation or reduction. The enzymes act on the                              Lock and key model of enzyme action
      following bonds :
                                                                In induced fit mechanism, the active site undergoes a
           C—C, C — O, C — N, C — S and C — X
                                                                change in its conformation in presence of a substrate to allow
Bimolecules                                                                                                                                                                  1143
a better fit between the active site and the substrate. It                           Some enzymes require a loosely bound cation such
means that enzymes are highly specific for the reaction                              as Mg2+ .
that they catalyse. It is shown in below
                                                                                                                     Dn
         Substrates
Reaction rate
                                                                                                                                   Reaction rate
                             Enzyme substrate                         Product
     Active site                 complex
                                                         Enzyme
                                                                  +
Enzyme
                                                                                                                                                   4   6        8       10
                                                                                                         Temperature C                                     pH       D
Features of Enzymes                                                                  (C) Effect of temperature on the rate of enzymatic reaction. On
                                                                                     represents the point of thermal denaturation of the enzyme
Some important features of enzymes are discussed below                               (44-45°C). (D) Effect of pH on the rate of enzyme reaction.
 (i) Specificity Enzymes show striking specificity.
     These catalyse have specific reactions of specific                         (iv) Concentration Enzyme concentration affect the rate
     substrates. Some enzymes are so specific that they                             of a reaction. If the substrate concentration is
     catalyse only one type of substrate molecule.                                  increased, the rate of enzyme reaction also increases.
                                                                                    Beyond a certain point, however, the enzyme becomes
     e.g. The enzyme chymotrypsin catalyses the
                                                                                    saturated with substrate molecules. Further increase
     hydrolysis of acetyl, L-phenyl-alanine methyl ester,
                                                                                    in reaction velocity occurs only if the enzyme
     but is inert to the D isomer.
                                                                                    concentration is increased.
(ii) Required in small amount Only one enzyme can                                   For example, during starvation the supply of the
     catalyse a large number of substrate molecules. In                             substrate (glucose) decreases and glycolysis is
     other words, enzymes are required in very small                                depressed. Conversely, increase in glucose
     amounts.                                                                       concentration accelerates the rate of reaction upto the
(iii) Activation energy Enzymes alter the speed of a                                point when enzyme is saturated with glucose.
     chemical reaction. They lower the energy of activation                     (v) Inhibitors Certain compounds (e.g. drugs, poisons)
     of a reaction, thus enabling it to occur at ordinary                           combine with an enzyme but do not serve as substrates.
     physiological temperatures.                                                    They block reaction by the enzyme and function as
                                                                                    inhibitors. The inhibitors usually resemble the
                                A.E.                          A.E.                  substrate in structure. The enzyme and the inhibitor
           Free energy
Free energy
                                                                                                                                           Enzyme
                                                                                                                                          inhibitor
                                                                                                                                          complex
                         A   Course of reaction          B
                                                                                         Enzyme Inhibitor
               Change in activation energy (A.E.)                                                                         Inhibition
    (A) Reaction without enzyme, (B) Reaction with enzyme.                                                 Mechanism of enzyme action inhibition.
                                                                                 l    Inhibition may be competitive or non-competitive.
Factors Affecting Enzyme Activity                                                     In competitive inhibition, both inhibitor and
 (i) Effect of temperature Enzyme action is greatly                                   substrate molecules compete for binding with the
     affected by temperature. If the temperature is                                   enzyme. If the inhibitor is in sufficiently high
     increased by 10°C, the rate of most chemical                                     concentration, it displaces the substrate molecules. For
     reactions is doubled. However, at 40-60°C, there is                              example, sulphanilamide is a competitive inhibitor for a
     loss of enzyme activity because denaturation of                                  bacterial enzyme that incorporates p-amino benzoic acid
     proteins occurs at this temperature.                                             into folic acid.
(ii) pH At optimum pH, the activity of enzyme is                                 l    Competitive inhibition can be reversed by increasing
     maximum. For most enzymes, the effective pH                                      the concentration of the substrate. In
     range is 4–9. Below and beyond these limits,                                     non-competitive inhibition, the inhibitors (poisons)
     denaturation of enzymes takes place. The optimum                                 react with the various functional groups of the
     pH for pepsin is 2.0 and for trypsin is 8.0.                                     enzyme. They inhibit the normal reactions catalysed
                                                                                      by the enzyme and result in death. Non-competitive
(iii) Ions Enzyme activity is affected by H + ion                                     inhibition cannot be reversed by increasing the
     concentration and other ionic concentrations.                                    concentration of the substrate.
1144                                                                                                                            JEE Main Chemistry
molecules of deoxyribose (a pentose sugar) and phosphate                                                The four atoms of the ring are numbered 1¢ , 2¢ , 3¢ and
groups.                                                                                                 4’. The carbon atom of —CH 2 is numbered 5¢.
The two strands are intertwined in a clockwise direction,                                                                         5¢
                                                                                                                         HOH2C             O       OH
i.e. in a right hand helix, and run in opposite directions.
Each successive nucleotide turns 36 degrees in the                                                                               4¢    H       H 1¢
horizontal plane. The width of the DNA molecule is 20 Å.                                                                          H             H
                                                                                                                                      3¢       2¢
The twisting of the strands result in the formation of                                                                                 OH H
deep and shallow spiral grooves.                                                                                             2-deoxyribose sugar
                 20Å                                                                               (ii) Nitrogenous bases are of two types, viz, pyrimidines
          5¢            3¢                      Sugar phosphate chains
                                                                                                        and purines. The pyrimidines are single ring
                                                           Base pairs                                   compounds, with nitrogen in position 1 and 3 of a
               G C      3.4 Å                                                                           6-membered benzene ring.
                A T
                  T A                                  G                C                               The two most common pyrimidines of DNA are
                    A T                     S                               S
                                                                                                        cytosine (C) and thymine (T). The purines are
    34Å
                                            S                               S                                    N                         N                        N—H
                                                                                P
                    A T                                                                                              O                             O                  O
                   T A                                 A                T                                    N                         N                        N
                                            S                               S
                C G
               G C                                                                                           H                         H                        H
                                                                                                         Cytosine (C)        Thymine (T)                      Uracil
                                                                                                                                                        (a pyrimidine base
          5'           3'                                                                                         Pyrimidines                            present in RNA)
                             Double helix structure of DNA                                                               NH2                            O
                                                                                                                 N                             N                H
Chemical Composition of Nucleic Acids                                                                                        N                              N
Nucleic acids are biopolymers made of nucleotides joined
together to form a long chain. Hence, these are called                                                           N       N                     N        N       NH2
polynucleotide. Each nucleotide consists of the pentose
sugar, deoxyribose, a phosphate group and nitrogenous                                                            H                             H
                                                                                                                  Adenine (A)                  Suanine (G)
base which may be either a purine or pyrimidine.
Deoxyribose and a nitrogenous base together form a                                                                           Purines
nucleoside.
                                                                                                    l    Two purines would occupy too much space, while two
A nucleoside and a phosphate together form a nucleotide.
                                                                                                         pyrimidines would occupy too little. Because of the
Nucleoside = deoxyribose + nitrogenous base
                                                                                                         purine-pyrimidine pairing, the total number of
Nucleotide = deoxyribose + nitrogenous base +phosphate                                                   purines in a double-stranded DNA molecule is equal
              = nucleoside + phosphate                                                                   to the total number of pyrimidines.
Nucleotide may be represented as,                                                                   l    Thus, A / T = 1 and G/C = 1
                                                Base                                                l    or, A + G = C + T (Chargaff’s rule).
                                    O           Sugar                                              (iii) Phosphate group In the DNA strand, the
                                            O                                                           phosphate groups alternate with deoxyribose. Each
                              HO—P                                                                      phosphate group is joined to carbon atom 3 of one
                                    OH                                                                  deoxyribose and to carbon atom 5 of another.
(i) Deoxyribose is a pentose sugar with five carbon                                                     Thus, each strand has a 3 end and a 5 end. The two
    atoms. Four of the five carbon atoms plus a single atom                                             strands are oriented in opposite direction. The 3 end
    of oxygen form a five-membered ring. The fifth carbon                                               of one strand corresponds to the 5 end of the other.
    atom is outside the ring and forms a part of a —CH 2                                                Consequently the oxygen atoms of deoxyribose point
    group.                                                                                              in opposite directions.
1146                                                                                                               JEE Main Chemistry
Example 5. Which one of the following bases is not present               with the same untill these are required. These RNA +
in DNA ?                                          (JEE Main 2014)        protein spherical balls are called informosomes.
    (a)   Quinoline                                                                               Termination codon AAUAAA sequence
                                                                                                                         Poly (A) sequence
    (b)   Adenine                                                         Cap                   (AUG)     (UAA)         (20-200 nucleotides)
    (c)   Cytosine                                                  5¢                                                                  3¢
    (d)   Thymine                                                         Non coding region1         Coding region    Non coding region 2
                                                                         (10-100 nucleotides)     (~1600 nucleotides) (50-150 nucleotides)
Sol. (a) DNA contains four nitrogenous pyramidine bases,                                        Structure of m-RNA
adenine, guanine, cytosine, thymine. While quinoline is an
alkaloid, hence, it is not present in DNA.                          (ii) r-RNA It makes 80% of total cellular RNA. These
                                                                         RNA is the basic constituent of ribosomes. It is
2. Ribose Nucleic Acid (RNA)                                             developed from r-DNA in the case of prokaryotes
It is the genetic material of mainly viruses. It can be                  while in the case of eukaryotes, it is developed from
single stranded or double stranded.                                      the nucleolar organiser region of chromosome.
                                                                         The various r-RNAs present in different units of
Chemical Composition of RNA                                              ribosome are as follows
RNA, like DNA is also a polymer of nucleotide which in                   Prokaryotes (70 S)
turn obtained from nucleoside, chemical which when
combines with phosphate.                                                 30 S ¾®16 S r-RNA; 50 S ¾® 23 S and 5 S r-RNA
Here, the point of difference is that the sugar present in               Eukaryotes (80S)
nucleoside is ribose sugar instead of deoxyribose sugar.                 40S ¾®18 S r-RNA; 60 S ¾® 28-29 S, 5.85 S, 5 S
 Nucleoside = ribose + nitrogenous base                                 r-RNA
 Nucleotide = ribose + nitrogenous base + phosphate                      Chloroplast and Mitochondria (55 S)
These are classified into                                                30S ¾® 12-13 S r-RNA; 40 S ¾®16-17 S r-RNA + 5 S
(i) Ribose The pentose sugar of RNA has an identical                     Structure of r-RNA is
    structure with deoxyribose sugar except that there is
    an —OH group instead of H on carbon atom 2¢ .                         Unpaired
                               5¢                                          bases
                       HOH2C         O    OH
                            4¢ H         H 1¢
                             H            H
                                3¢       2¢
                                    OH OH                                                                Coiled
                                                                         Paired bases                    region
                            Ribose sugar
                                                                                                                    Uncoiled region
(ii) Nitrogenous base are divided into two types :                                               Structure of r-RNA
     pyrimidines and purines. Purine bases are same as
                                                                    (iii) t-RNA It makes 10-20% of total cellular RNA with
     that in DNA but pyrimidine bases are cytosine (C)
                                                                          sedimentation coefficient of 3.8 S. These RNA
     and uracil (U). (In RNA uracil replaces thymine).
                                                                          contains 73-93 nucleotides with in the structure given
(iii) Phosphate is same as DNA.                                           below
Note There are viruses, called retroviruses, in which                                                 Amino
information flows from RNA to DNA. The virus that causes                                               acid       Amino acid
                                                                                                                  binding site
                                                                                                         ACC
The above structure is called clover leaf model and was            (ii) DNA molecules can control the synthesis of proteins
fully worked out by Holley et al. of yeast alanine t-RNA.               in an exact and specific way. Synthesis of a
The function of t-RNAs is to align the required amino                   polypeptide chain is controlled by a particular gene.
acids according to the nucleotide sequence of m-RNA.                    The gene, which is almost always a segment of a DNA
                                                                        strand, transcribes an m-RNA which acts as an
                                                                        intermediate in conveying information from the
The Genetic Code                                                        sequence of amino acids in the polynucleotide chain.
Nucleic acids control heredity on molecular level. The                  Each amino acid is specified by a sequence of three
double helix of DNA is reponsible for the hereditary                    bases known as codon of m-RNA.
information of the organisms. The information is stored
                                                                        Each t-RNA molecules has a sequence of three
as the sequence of bases along the polynucleotide chain.
                                                                        bases known as anticodon, which reads a codon of
DNA preserve the hereditary informations and use it.
                                                                        m-RNA. t-RNA molecules thus serve as adaptors in
 It done these things through two properties                            protein synthesis by reading of m-RNA codons in a
(i) DNA molecules can duplicate themselves (replication).               sequence.
                    Practice Exercise
                              ROUND I Topically Divided Problems
Carbohydrates                                                            Which can be used to make distinction between an
  1. The two functional groups present in a typical                      aldose and a ketose ?
      carbohydrate are                                                   (a) I, II and III (b) II and III (c) I only (d) II only
      (a) — OH and —COOH          (b) —CHO and —COOH                  6. If a-D-glucopyranose is reacted with acetic
      (c)     C == O and —OH      (d) —OH and —CHO                      anhydride at 373 K, the major product is the
                                                                        b-isomer of the pentaacetate. It is attributed to
  2. Which is not true for carbohydrates?
                                                                         (a)   isomerisation of a-D into b-D-glucose at 373 K
      (a) General formula is CnH2nOn
                                                                         (b)   opening of glucopyranose ring
      (b) Glucose is the most common monomer of
                                                                         (c)   Both the statements are correct
          carbohydrates
                                                                         (d)   None of the statement is correct
      (c) Fructose is the sweetest of all sugars
      (d) Do not conjugate with lipids                                7. Number of stereo-centers present in linear and cyclic
                                                                         structures of glucose are respectively     (JEE Main 2019)
  3. Identify the product ‘ C ’ in the following series of
      reactions                                                          (a) 4 and 5 (b) 4 and 4      (c) 5 and 4   (d) 5 and 5
                     HCN
            Glucose ¾¾®     2
                         A ¾¾®
                                  H O
                                  HI
                               B ¾¾® C
                                                                      8. When glucose reacts with bromine water the main
                                                                         product is
      (a) heptanoic acid          (b) hexanoic acid
                                                                         (a) acetic acid              (b) saccharic acid
      (c) a-methyl caproic acid   (d) None of these
                                                                         (c) glyceraldehyde           (d) gluconic acid
  4. The two forms of D-glucopyranose obtained from                   9. Which of the following statements is correct?
      the solution of D-glucose are called                                                                          [JEE Main 2020]
      (a) isomer                  (b) anomer                             (a) Gluconic acid is obtained by oxidation of glucose
      (c) epimer                  (d) enantiomer                             with HNO3
  5. Consider the following reagents                                     (b) Gluconic acid is a dicarboxylic acid
                                                                         (c) Gluconic acid can form cyclic (acetal/hemiacetal)
            I. Br 2                          water           II.
                                                                             structure
               Tollen’s reagent
                                                                         (d) Gluconic acid is a partial oxidation product of glucose
       III. Fehling’s solution