Molecules 29 05485
Molecules 29 05485
                                         Abstract: Betalains, which contain nitrogen and are water soluble, are the pigments responsible for
                                         many traits of plants and biological activities in different organisms that do not produce them. To
                                         better annotate and identify betalains using a spectral library and fingerprint, a database catalog
Citation: Araujo-León, J.A.;
                                         of 140 known betalains (112 betacyanins and 28 betaxanthins) was made in this work to simplify
Sánchez-del Pino, I.;
Brito-Argáez, L.G.;
                                         betalain identification in mass spectrometry analysis. Fragmented peaks obtained using MassFrontier,
Peraza-Sánchez, S.R.;                    along with chemical structures and protonated precursor ions for each betalain, were added to the
Ortiz-Andrade, R.;                       database, which is available as Supplementary Materials in the manuscript. Product ions made in
Aguilar-Hernández, V. In Silico Mass     MS/MS and multistage MS analyses of betanin, beetroot extract, and red pitaya extract revealed the
Spectrometric Fragmentation and          fingerprint of betalains, distinctive ions of betacyanin, betacyanin derivatives such as decarboxylated
Liquid Chromatography with Tandem        and dehydrogenated betacyanins, and betaxanthins. A distinctive ion with m/z 211.07 was found
Mass Spectrometry (LC-MS/MS)             in betaxanthins. By using the fingerprint of betalains in the analysis of red pitaya extracts, the
Betalainic Fingerprinting:               catalog of betalains in red pitaya was expanded to 86 (31 betacyanins, 36 betacyanin derivatives, and
Identification of Betalains in Red
                                         19 betaxanthins). Four unknown betalains were detected to have the fingerprint of betalains, but
Pitaya. Molecules 2024, 29, 5485.
                                         further research will aid in revealing the complete structure. Taken together, we envisage that the
https://doi.org/10.3390/
                                         further use of the fingerprint of betalains will increase the annotation coverage of identified molecules
molecules29225485
                                         in studies related to revealing the biological function of betalains or making technologies based on
Academic Editors: Marilena Dasenaki      these natural colorants.
and Niki Maragou
Received: 24 September 2024              Keywords: betacyanins; betacyanin derivatives; betaxanthins; LC-MS/MS; fingerprint betalains;
Revised: 6 November 2024                 red pitaya
Accepted: 12 November 2024
Published: 20 November 2024
                                         1. Introduction
                                              Betalains are water-soluble natural pigments that contain nitrogen and have interesting
Copyright: © 2024 by the authors.
Licensee MDPI, Basel, Switzerland.
                                         absorption and emission properties; they are backed by conjugated double bonds and
This article is an open access article
                                         at least one heterocyclic nitrogen. Studies on the properties of betalains have revealed
distributed under the terms and          that, besides their spectroscopic and fluorescent properties, betalains are essential for
conditions of the Creative Commons       attracting pollinators and dispersers by providing color to plant tissues; contribute to
Attribution (CC BY) license (https://    drought tolerance and excessive light stress [1]; and are important for preserving good
creativecommons.org/licenses/by/         health through their diverse biological activities, such as anti-inflammatory, antioxidant,
4.0/).                                   anti-hypertensive, antidiabetic, and immunomodulatory activities, as well as through
                           their cancer chemoprotective properties [2,3]. Another health benefit of betalains has been
                           seen when betalains are used as a natural food colorant, which has been approved by the
                           Food and Drug Administration (FDA) and by the National Food Safety Standard in China
                           (National Food Safety Standard Use for Food Additive, GB2760-2011) [4]. However, the
                           different biological activity tests and the color of the plant tissues correlate with the betalains
                           contained in the extracts. The assertion that specific betalains are present points out the
                           value of diverse sources of betalains, suggesting that analytical methods are crucial for
                           accurately identifying betalains with high sensitivity. Sources of betalains include most
                           families of plants in the order Caryophyllales, fungi of the genus Amanita, and the bacteria
                           Gluconacetobacter diazotrophicus [5–7]. Biochemical, genetic, and evolutionary studies have
                           revealed that the lineage-specific production of betalains in the order Caryophyllales lies in
                           the conservation and duplication events of genes encoding enzymes in the biosynthetic
                           pathway of betalains [8].
                                 Two main classes of betalains exist: red-violet betacyanins and yellow-orange be-
                           taxanthins. In plants, during the biosynthesis of betalains, betalamic acid is condensed
                           with either cyclo-DOPA or glycosylated cyclo-DOPA. The sugar moieties can be acylated
                           with aromatic organic acids, such as ferulic, p-coumaric, caffeic, sinapic, and malonic acid,
                           to further prevent the cleavage of betalains by β-glucosidases. Betaxanthins result from
                           condensed betalamic acid with an imino or amino group of amino acids. Extra expansion
                           of the chemical diversity of betalains is due to epimerization at the chiral center C15 [9].
                           By contrast, the degradation of betalains involves decarboxylation by removing carboxyl
                           groups and oxidative dehydrogenation. More factors that impact the stability of betalains
                           have been noted to result in damaging effects on the pigment. These causes include the
                           temperature of food storage, pH, and light, among other causes, which are extensively
                           reviewed in Sadowska-Bartosz and Bartosz 2021 [10]. Plant edibles of the order Caryophyl-
                           lales that produce betalains include roots of Beta vulgaris (beetroot), tubers such as Ullucus
                           tuberosus Caldas (Ullucos), leaf of B. vulgaris L. ssp. Cicla (Chard), grain and vegetable
                           amaranth classes (Amaranthus cruentus L., A. caudatus L. and A. hybridus L., Amaranthus
                           tricolor), and fruits of the genus Opuntia, Eulychnia, and Selenicereus (Hylocereus) [10].
                                 Fruit of the genus Selenicereus exist in three different colors assigned to betalains [11,12]:
                           red-skinned fruit with white flesh (Selenicereus undatus), red-skinned fruit with red flesh (S.
                           costaricensis and S. monacanthus), and pink-skinned fruit with white flesh or yellow-skinned
                           fruit with white flesh (S. megalanthus). Among those species, S. undatus is the most widely
                           spread and cultivated around the world, including countries such as Vietnam, China,
                           Indonesia, the United States, and Mexico, among others. In Selenicereus spp., as in other
                           Caryophyllales plants, the lack of analytical standards for characterizing betalains has been
                           managed by the chemical synthesis of betalains and purifying and separating individual
                           endogenous betalains to reveal the biological activities supported by them [13–17]. How-
                           ever, key biological activities have been revealed for betalains in Selenicereus spp., such as
                           antioxidant activity [18–20]; the thermal stability of betacyanins from juice [21–24]; the sta-
                           bility of betalains in pure form, in spray-dried pitaya peel powders, or as a natural colorant
                           in food [25–27]; antibacterial activity [28–30]; and antiviral activity against IAV (influenza A
                           virus)-infected A549 cells [31]. As multiple betalains may exist, as in other Caryophyllales
                           plants, identifying betalains needs extensive coverage to assess the influence of the diverse
                           array of betalains.
                                 Structural characterization and massive surveying of betalains through either Nuclear
                           Magnetic Resonance (NMR) or mass spectrometry (MS) not only provides opportunities to
                           understand the biology of betalains but also helps to distinguish unrevealed betalains. For
                           example, the preparative fractionation of betalains from Phytolacca americana has resulted
                           in the discovery of structural features of 15S-betanin and 15R-isobetanin and an expansion
                           of the betalains catalog to 17 betalains [16,32]. The catalog of betalains has been further
                           expanded by liquid chromatography (LC) coupled with MS and the fortunate discovery of
                           distinct retention times of betalain epimers during chromatography analysis, which typi-
                           cally display different retention times. Although candidates for betalains were identified
Molecules 2024, 29, 5485                                                                                           3 of 24
                           at all five confidence levels [33,34], most of them were identified at level 4 with molecu-
                           lar formulas by means of charge state determination, adduct ion determination, isotope
                           abundance distribution, and UV–Vis absorption [35–37]. The catalog of betalains has been
                           expanded to 22 betalains (15 betaxanthins and 7 betacyanins) in beetroot [38], 24 betalains
                           (18 betaxanthins and 6 betacyanins) in 10 Mexican prickly pear cultivars [39], 28 betalains
                           (19 betaxanthins and 9 betacyanins) in Swiss chard [40], 43 betalains (30 betaxanthins and
                           13 betacyanins) in Amaranthus cruentus [37], 48 betalains (22 betaxanthins and 26 beta-
                           cyanins) in three beetroot cultivars [41], 68 betalains (34 betaxanthins and 34 betacyanins)
                           in Djulis [36], and 146 betacyanins, most of which have a high molecular weight of over
                           1000 Da, in Bougainvillea glabra [42]. Given that some betacyanins are specific to certain
                           species, the combined number of betacyanins from different species exceeds 200 [42,43],
                           which highlights the wide variety of these pigments.
                                 This work aims to examine the fingerprint of betalains in samples that are compatible
                           with mass spectrometry by means of MSPD (Matrix Solid-Phase Dispersion)-based prepa-
                           ration samples, LC-MS/MS analysis, and spectra interpretation aided by in silico spectral
                           libraries of betalains.
                                     type betacyanins, which are heavier and lighter than amaranthin. Currently, this database
                                     is both new and has the largest collection of betalains available, as far as we know.
                                              When the molecular mass distribution of betalains was analyzed, the molecular ion
                                        [M+H]+ masses of betalains ranged from 250 to 1350. However, the molecular ion [M+H]+
                                        masses of betacyanins and betaxanthins do not overlap (Figure 2). Betaxanthins with
                                        smaller molecular ion [M+H]+ masses map up to 400, while betacyanins not only have
                                        larger molecular masses but also display isomeric forms at C-15 (Figure 3A). For instance,
                                        betanin and isobetanin, or the aglycone of almost all betacyanins known as betanidin, with
                                        its isomeric form being isobetanidin. Betacyanin’s molecular ion [M+H]+ masses being
                                        larger than betaxanthins is explained by the attached glycosyl groups, while betaxanthins
                                        contain an amino group of amino acids. The database displayed in Table S3 also shows
                                        the chemical structure, chemical formula, monoisotopic mass, [M+H]+ ion, and the prod-
                                        uct ion mass list of [M+H]+ for each betalain. This library compiles a list of both shared
                                        and specific ion mass lists for betacyanins and betaxanthins. They share the molecular
                                        frame of betalamic acid, and the structure of aglycone has the frame of all betacyanins,
                                        with m/z 389.0979, except for decarboxylated or dehydrogenated betacyanins. The specific
                                        framework for betacyanin-types are as follows: betanin-type with m/z 551.1508, amaran-
                                        thin-type with m/z 727.1829, melocactin-type with m/z 713.2036, apiocactin-type with m/z
                                        683.1930, gomphrenin-type with m/z 551.1508, glabranin-type with m/z 713.2036, and spe-
                                        cific ions for betaxanthin classes. In betacyanins, extra shifts of m/z are associated with the
                                        addition of substituents or the loss of an H2 or carboxylic group. For instance, Figure 2
                                        shows the 16 amaranthin-type betacyanins, which are heavier and lighter than amaran-
                                        thin. Currently, this database is both new and has the largest collection of betalains avail-
                                        able, as far as we know.
                                      Figure 2.
                                     Figure  2. Distribution
                                                 Distributionof the parent
                                                                of the     ion masses
                                                                        parent        of betaxanthin
                                                                                ion masses           and betacyanin
                                                                                             of betaxanthin         classes. There
                                                                                                              and betacyanin       are 140There are
                                                                                                                                classes.
                                      betalains displayed, but many   of them are isomeric.
                                     140 betalains displayed, but many of them are isomeric.
Molecules 2024, 29, 5485
                           Figure 2. Distribution of the parent ion masses of betaxanthin and betacyanin classes. There are 140 5 of 24
                           betalains displayed, but many of them are isomeric.
                           Figure
                            Figure3.3.Identification of of
                                        Identification  betanin  andand
                                                           betanin   its isomer isobetanin.
                                                                         its isomer         (A) The
                                                                                    isobetanin.  (A) chemical structure
                                                                                                     The chemical       of betanin
                                                                                                                    structure  of betanin
                           and
                            andisobetanin.
                                isobetanin.(B)(B)
                                                Extract  ionion
                                                   Extract   current chromatogram
                                                                current  chromatogramobtained for the
                                                                                         obtained  forion
                                                                                                       them/z
                                                                                                           ion551.1495.
                                                                                                               m/z 551.1495.
                                    were surveyed for ions with relative abundance higher than 5% and matching structure
                                    (Table S2). Up to 23 ions with m/z between 389.09 and 106.06 were discovered. Thirteen
                                    ions with m/z greater or equal to 253.09 and ions with m/z 176.07 and 150.05 were matched
                                    with exclusive structural sections of betacyanins, whereas eight distinct ions with m/z
                                    211.07, 194.04, 179.08, 178.05, 166.05, 138.05, 132.04, and 106.06 were matched with the core
   Molecules 2024, 29, x FOR PEER REVIEW                                                                              7 of 24 for
                                    structure of betalains containing the pyridine ring. The structural information deduced
                                    the ions found here suggests that they are essential fragments for identifying betalains.
                                Figure 4. Fragmentation spectrum of betanin. (A) MS/MS spectrum of the ion m/z 551.1495 frag-
                                 Figure 4. Fragmentation spectrum of betanin. (A)3MS/MS spectrum of the ion m/z 551.1495 frag-
                                mented with high-energy HCD at 50 eV. (B) MS      spectrum obtained with the ion with m/z 389.09
                                 mented with high-energy HCD at 50 eV. (B) MS3 spectrum obtained with the ion with m/z 389.09
                                fragmented   with CID at 35 eV (551.1495 CID35  → 389     ).→).
                                                                                      CID35
                                 fragmented with CID at 35 eV (551.1495 CID35  389 CID35
                                     with m/z 389.09 and 150.05 have been seen in the analysis of betalains from Chenopodium
                                     formosanum and Amaranthus cruentus [36,37].
                                           The betacyanin derivatives do not produce a product ion with m/z 389.09 because the
     Molecules 2024, 29, x FOR PEER REVIEW
                                     aglycone frame has lost at least one carboxylic group or has been dehydrogenated.                      8 of 24
                                                                                                                                                  The
                                     identification of betacyanin derivatives was markedly straightforward with the fingerprint
                                     ions of betalains, but the confirmation of the carbons undergoing decarboxylation will need
                                     further  investigation
                                        will need              since masssince
                                                   further investigation     spectrometry        is not able
                                                                                   mass spectrometry           to specify
                                                                                                            is not           carbons
                                                                                                                   able to specify     undergoing
                                                                                                                                    carbons    un-
                                     decarboxylation     in these conditions.
                                        dergoing decarboxylation                  Based on the
                                                                      in these conditions.          data
                                                                                                Based   onfor
                                                                                                            thedecarboxylated     betacyanins,
                                                                                                                data for decarboxylated      beta-for
                                     which   the decarboxylated
                                        cyanins,                    betacyanins atbetacyanins
                                                  for which the decarboxylated         either C2, C15,     or C17
                                                                                                     at either      wereor
                                                                                                                C2, C15,   resolved
                                                                                                                              C17 werein resolved
                                                                                                                                          C18-phase
                                        in C18-phase chromatography
                                     chromatography                          [32–34], the decarboxylated
                                                          [32–34], the decarboxylated                            betacyanins
                                                                                                betacyanins identified           identified
                                                                                                                              here            here
                                                                                                                                    were mapped
                                        were mapped
                                     relative           relative
                                              to betanin.        to betanin.
                                                            Betacyanin         Betacyanin
                                                                         derivatives          derivatives
                                                                                         in the   beetrootin   the beetroot
                                                                                                             extract          extract were
                                                                                                                      were composed          com-be-
                                                                                                                                          of nine
                                        posed
                                     tanin     of nine betanin
                                            derivatives   and fourderivatives
                                                                     neobetanin  andderivatives.
                                                                                     four neobetanin       derivatives. Decarboxylated
                                                                                                     Decarboxylated                          beta-
                                                                                                                         betacyanin derivatives
                                        cyanin derivatives
                                     displayed    the loss ofdisplayed    the group
                                                               a carboxylic     loss of in
                                                                                        a carboxylic     group in
                                                                                            the framework;          the the
                                                                                                                 thus,   framework;
                                                                                                                              precursor thus,
                                                                                                                                           ion the
                                                                                                                                                mass
                                        precursor   ion  mass   was smaller    than  their   counterpart,    unmodified     betacyanin.
                                     was smaller than their counterpart, unmodified betacyanin. For instance, the mass of the              For  in-
                                        stance,
                                     betanin     the massion
                                              precursor     of was
                                                               the betanin   precursor
                                                                    m/z 551.1483,    andionthe was
                                                                                                massm/z    551.1483,
                                                                                                       of the         and the mass of precursor
                                                                                                               17-decarboxy-betanin        the 17-
                                        decarboxy-betanin      precursor   ion   was  m/z   507.1594.    Decarboxylated
                                     ion was m/z 507.1594. Decarboxylated betacyanin derivatives showed the typical loss of  betacyanin    deriva-
                                        tives showed
                                     a glucosyl        the with
                                                  moiety    typical
                                                                 anloss
                                                                     m/zofofa 162.053
                                                                              glucosyl[M  moiety
                                                                                              + H with    an m/z of
                                                                                                    −162.053],       162.053
                                                                                                                  which        [M + H for
                                                                                                                          explains,    −162.053],
                                                                                                                                            instance,
                                        which   explains,  for instance,  the  product    ion   with  m/z  345.10  or m/z
                                     the product ion with m/z 345.10 or m/z 343.09 in decarboxylated betanins (2-decarboxy- 343.09 in  decarbox-
                                        ylated betanins (2-decarboxy-betanin, 15-decarboxy-betanin, and 17-decarboxy-betanin)
                                     betanin, 15-decarboxy-betanin, and 17-decarboxy-betanin) and decarboxylated neobetanin
                                        and decarboxylated neobetanin (for example, 2-decarboxy-neobetanin), respectively (Fig-
                                     (for example, 2-decarboxy-neobetanin), respectively (Figure 5). Detecting those ions was
                                        ure 5). Detecting those ions was in accordance with previous reports of betalain analysis
                                     in accordance with previous reports of betalain analysis [22,36,47,48]. As decarboxylated
                                        [22,36,47,48]. As decarboxylated betacyanin derivatives, dehydrogenated betacyanin de-
                                     betacyanin derivatives, dehydrogenated betacyanin derivatives showed a loss of H2 in their
                                        rivatives showed a loss of H2 in their framework; thus, the precursor ion mass was smaller
                                     framework; thus, the precursor ion mass was smaller than the counterpart unmodified
                                        than the counterpart unmodified betacyanin, as previously described [49]. Dehydrogen-
                                     betacyanin,    as previously
                                        ated betacyanins             described
                                                            and betacyanin         [49]. Dehydrogenated
                                                                              derivatives     include neobetanin  betacyanins     and betacyanin
                                                                                                                     with m/z 549.13,    2-decar-
                                     derivatives   include    neobetanin     with   m/z   549.13,   2-decarboxy-2,3-dehydro-betanin
                                        boxy-2,3-dehydro-betanin with m/z 505.1435, 2-decarboxy-2,3-dehydro-isobetanin with                      with
                                     m/zm/z
                                          505.1435,   2-decarboxy-2,3-dehydro-isobetanin               with   m/z  505.1429,
                                             505.1429, 2,17-bidecarboxy-2,3-dehydro-betanin with m/z 461.1538, 2-Decarboxy-2,3- 2,17-bidecarboxy-
                                     2,3-dehydro-betanin
                                        dehydro-neobetaninwith   withm/z
                                                                       m/z461.1538,
                                                                             503.1281, 2-Decarboxy-2,3-dehydro-neobetanin
                                                                                          and 2,17-Bidecarboxy-2,3-dehydro-neobetanin      with m/z
                                     503.1281,  and   2,17-Bidecarboxy-2,3-dehydro-neobetanin
                                        with m/z 459.134.                                                    with  m/z  459.134.
                                       Figure
                                    Figure     5. Fragmentationspectra
                                            5. Fragmentation     spectraofofbetacyanin
                                                                             betacyanin derivatives
                                                                                        derivatives with
                                                                                                    withHCD
                                                                                                         HCDatat5050eV.
                                                                                                                     eV.(A)
                                                                                                                         (A)MS/MS
                                                                                                                              MS/MS  spectrum
                                                                                                                                       spectrum
                                       of 2-decarboxy-betanin.(B)
                                    of 2-decarboxy-betanin.     (B)MS/MS
                                                                    MS/MS spectrum
                                                                              spectrum of
                                                                                       of 2-decarboxy-neobetanin.
                                                                                          2-decarboxy-neobetanin.CoreCoreions areare
                                                                                                                           ions   highlighted
                                                                                                                                     highlighted
                                       in black.
                                    in black.
                                             Next,
                                          Next,    betaxanthinswere
                                                betaxanthins     wereanalyzed
                                                                      analyzed based
                                                                                 based on
                                                                                        on the
                                                                                            thehypothesis
                                                                                                hypothesisthat  a fingerprint
                                                                                                             that              of beta-
                                                                                                                   a fingerprint  of beta-
                                       lains can be  generated  upon  molecular   ion fragmentation    in a mass   spectrometer
                                    lains can be generated upon molecular ion fragmentation in a mass spectrometer since          sincebe-
                                       betacyanins
                                    tacyanins       and betaxanthins
                                               and betaxanthins       share
                                                                  share  the the framework
                                                                             framework        of betalamic
                                                                                          of betalamic      acid.
                                                                                                         acid.    Indeed,
                                                                                                               Indeed,   1313 betaxan-
                                                                                                                            betaxanthins
                                       thins were identified in the beetroot extract, including 10 hydrophobic-type betaxanthins
                                    were identified in the beetroot extract, including 10 hydrophobic-type betaxanthins and
                                       and 3 polar uncharged-type betaxanthins. Remarkably, a product ion with m/z 211.07 was
                                    3 polar uncharged-type betaxanthins. Remarkably, a product ion with m/z 211.07 was found
                                       found in betaxanthins that structurally maps to betalamic acid, bearing a nitrogen at-
                                    in betaxanthins that structurally maps to betalamic acid, bearing a nitrogen attached to the
                                       tached to the corresponding amino acid of betaxanthins. Additionally, ions were structur-
                                    corresponding amino acid of betaxanthins. Additionally, ions were structurally mapped
                                       ally mapped to the heterocyclic pyrimidine ring, such as those with m/z 194.04, 166.05,
                                    to 138.05,
                                       the heterocyclic  pyrimidine ring, such as those with m/z 194.04, 166.05, 138.05, 132.04,
                                               132.04, 130.05, and 106.06. For instance, the generation of these ions was found in
                                       the mass spectra of glutamine-bx and tryptophan-bx (Figure 6). Given the variety of con-
                                       jugated amino acids in betaxanthins, defining distinct ions with m/z values that match to
                                       a framework outside of the ion with m/z 211.07 was a challenge.
Molecules 2024, 29, 5485                                                                                                                    8 of 24
                                     130.05, and 106.06. For instance, the generation of these ions was found in the mass spectra
                                     of glutamine-bx and tryptophan-bx (Figure 6). Given the variety of conjugated amino acids
     Molecules 2024, 29, x FOR PEER REVIEW
                                     in betaxanthins, defining distinct ions with m/z values that match to a framework9 outside
                                                                                                                          of 24
                                     of the ion with m/z 211.07 was a challenge.
                                   Figure
                                Figure  6. 6. Fragmentationspectra
                                           Fragmentation    spectraof
                                                                    oftwo
                                                                       two betaxanthins
                                                                            betaxanthins with
                                                                                         withHCD
                                                                                               HCDatat5050eV.
                                                                                                           eV.(A)
                                                                                                               (A)MS/MS
                                                                                                                   MS/MS  spectrum  of of
                                                                                                                             spectrum
                                   glutamine-bx.  (B) MS/MS  spectrum  of tryptophan-bx. Core ions are highlighted in
                                glutamine-bx. (B) MS/MS spectrum of tryptophan-bx. Core ions are highlighted in black.black.
                                2.4.2.4. IdentificationofofBetalains
                                      Identification        Betalainsin
                                                                      inRed
                                                                        Red Pitaya
                                                                            Pitaya Extract
                                                                                   Extract
                                         Assumingthat
                                      Assuming         thatour
                                                            ouridentified
                                                                  identified betalain
                                                                               betalain features
                                                                                           featuresin  inbeetroot,
                                                                                                           beetroot,along
                                                                                                                      alongwithwiththethe
                                                                                                                                        betalain
                                                                                                                                           betalain
                                   fingerprint   ions   determined     in this  study,   can  be  used   to survey   betalains
                                fingerprint ions determined in this study, can be used to survey betalains in red pitaya, we     in  red  pitaya,
                                   we examined
                                examined    the red thepitaya
                                                         red pitaya   extract
                                                                extract   mademade    following
                                                                                  following     thethe  previously
                                                                                                     previously      reportedmethod
                                                                                                                   reported      methodbased
                                                                                                                                           based on
                                   on  MSPD     that  is  compatible     with  mass   spectrometry       [37]. A total  of
                                MSPD that is compatible with mass spectrometry [37]. A total of 86 betalains were identified86  betalains   were
                                   identified  in the   red pitaya   extract  distributed    at 12 min    chromatographic
                                in the red pitaya extract distributed at 12 min chromatographic resolution with different      resolution   with
                                   different   abundance      (Table   1 and   Figure   7).  The  betalains   discovered
                                abundance (Table 1 and Figure 7). The betalains discovered in this study were previously   in this  study   were
                                   previously identified by others using chemical, LC-MS/MS, or NMR methods
                                identified  by others using chemical, LC-MS/MS, or NMR methods [15,36,37,43,50–52], with
                                   [15,36,37,43,50–52], with the exception of four unknown betalains. The abundance of each
                                the exception of four unknown betalains. The abundance of each betalain was determined
                                   betalain was determined by measuring the area below the base peak of the ion m/z of
                                by measuring the area below the base peak of the ion m/z of betalain that was examined.
                                   betalain that was examined. When the betalains in the extract were classified into two
                                When the betalains in the extract were classified into two main classes, it was notable that
                                   main classes, it was notable that all 19 identified betaxanthins were of low abundance
                                all 19 identified betaxanthins were of low abundance compared to the total 67 betacyanins
                                   compared to the total 67 betacyanins that map to m/z above 450. This work expanded the
                                that  map to m/z above 450. This work expanded the catalog of betalains in pitaya to 86
                                   catalog of betalains in pitaya to 86 compared with the previous number of betalains re-
                                compared     with
                                   ported. For       the previous
                                                 instance,   8 betalainsnumber     of betalains
                                                                           in red-purple     pitayareported.
                                                                                                      HylocereusFor    instance,
                                                                                                                  polyrhizus        8 betalains
                                                                                                                               (Weber)    Britton in
                                red-purple               Hylocereus     polyrhizus
                                   & Rose [53]; 11 in the red flesh and orange flesh varieties of Stenocereus pruinosus andred
                                              pitaya                                 (Weber)     Britton    &  Rose   [53];  11  in  the       flesh
                                                                                                                                            Sten‐
                                and            flesh   varieties   of  Stenocereus    pruinosus     and   Stenocereus   stellatus
                                   ocereus stellatus [54]; 20 in the red flesh of Hylocereus costaricensis, white flesh of Hylocereusthe
                                      orange                                                                                        [54]; 20  in
                                     flesh of Hylocereus
                                redmegalanthus,               costaricensis,
                                                   and Hylocereus      undatuswhite     flesh23ofinHylocereus
                                                                                 [55]; and                       megalanthus,
                                                                                                     the red flesh   of Hylocereus      Hylocereus
                                                                                                                                  andpolyrhizus
                                undatus   [55]; andundatus
                                   and Hylocereus      23 in the   red flesh of Hylocereus polyrhizus and Hylocereus undatus [56].
                                                                [56].
Molecules 2024, 29, 5485                                                                                                                                                                        9 of 24
Table 1. Chromatographic and mass spectrometry data for betalains from Hylocereus costaricensis.
                                       Relative                                                        Mass
                           Retention                 Chemical         Theoretical       Observed
  #      Compound A                    Rt from                                                       Accuracy                               Fragments                                Reference B
                           Time (Rt)                 Formula          m/z [M+H]+       m/z [M+H]+
                                       Betanin                                                        (ppm)
  1      Betalamic acid      3.23        0.94        C9 H9 NO5         212.0553          212.0545      −3.77               194.04, 166.05, 148.04, 138.05, 120.04, 106.03                [15]
                                                                                    Betanin-type
                                                                                                                   389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  2        Prebetanin        3.19        0.93      C24 H26 N2 O16 S    631.1076          631.1052       −3.8       253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,     [57,58]
                                                                                                                                            132.04, 106.6
                                                                                                                   389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  3          Betanin         3.43          1       C24 H26 N2 O13      551.1508          551.1483      −4.54       253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [9,59]
                                                                                                                                            132.04, 106.6
                                                                                                                   389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  4         Betanidin        3.44          1        C18 H16 N2 O8      389.0979          389.0964      −3.86       253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,       [60]
                                                                                                                                            132.04, 106.6
          2-decarboxy-                                                                                             343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  5                          3.62        1.06      C23 H24 N2 O11      505.1453          505.1429      −4.75                                                                             [61]
          xanbetanin *                                                                                                     178.05, 176.07, 150.05, 138.05, 132.04, 106.06
         17-decarboxy-                                                                                             345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  6                          5.83         1.7      C23 H26 N2 O11      507.1609          507.1591      −3.55                                                                          [23,49,62]
             betanin                                                                                                           176.07, 150.05, 138.05, 132.04, 106.06
                                                                                                                   389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  7      Isoprebetanin       6.01        1.75      C24 H26 N2 O16 S    631.1076          631.1047       −4.6       253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
                                                                                                                                            132.04, 106.6
                                                                                                                   389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  8        Isobetanin        6.59        1.92      C24 H26 N2 O13      551.1508          551.1481       −4.9       253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,       [9]
                                                                                                                                            132.04, 106.6
           2-decarboxy-                                                                                            343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  9                           6.6        1.92      C23 H24 N2 O11      505.1453          505.1433      −3.96                                                                             [22]
         isoxanbetanin *                                                                                                   178.05, 176.07, 150.05, 138.05, 132.04, 106.06
               2,17-
                                                                                                                   343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  10       bidecarboxy-      7.61        2.22       C22 H24 N2 O9      461.1555          461.1534      −4.55                                                                           [22,51]
                                                                                                                           178.05, 176.07, 150.05, 138.05, 132.04, 106.06
           xanbetanin *
          17-decarboxy-                                                                                            345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  11                         7.69        2.24      C23 H26 N2 O11      507.1609          507.1587      −4.34
            isobetanin                                                                                                         176.07, 150.05, 138.05, 132.04, 106.06
                                                                                                                   389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  12      Phyllocactin       7.71        2.25      C27 H28 N2 O16      637.1512          637.1497      −2.35       253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [9,63]
                                                                                                                                            132.04, 106.6
         17-decarboxy-                                                                                             345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  13                         8.01        2.34      C26 H28 N2 O14      593.1613          593.1591      −3.71                                                                           [22,23]
          phyllocactin                                                                                                         176.07, 150.05, 138.05, 132.04, 106.06
Molecules 2024, 29, 5485                                                                                                                                                           10 of 24
Table 1. Cont.
                                        Relative                                                 Mass
                            Retention                Chemical       Theoretical    Observed
  #      Compound A                     Rt from                                                Accuracy                            Fragments                                Reference B
                            Time (Rt)                Formula        m/z [M+H]+    m/z [M+H]+
                                        Betanin                                                 (ppm)
         15-decarboxy-                                                                                    345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  14                          8.29         2.42    C23 H26 N2 O11    507.1609      507.1591     −3.55                                                                         [49,64]
            betanin                                                                                                   176.07, 150.05, 138.05, 132.04, 106.06
                                                                                                          387.07, 341.07, 313.08, 299.10, 299.06, 287.08, 281.09, 269.09,
  15       Neobetanin         8.31         2.42    C24 H24 N2 O13    549.1351      549.1336     −2.73     255.08, 253.09, 194.04, 178.05, 176.07, 166.05, 150.05, 132.04,      [51]
                                                                                                                                      106.06
         17-decarboxy-                                                                                    343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  16                          8.39         2.45    C23 H24 N2 O11    505.1453      505.1438     −2.97                                                                          [22]
          neobetanin *                                                                                            178.05, 176.07, 150.05, 138.05, 132.04, 106.06
          2-decarboxy-                                                                                    343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  17                           8.4         2.45    C23 H24 N2 O11    505.1453      505.1432     −4.16                                                                          [47]
           neobetanin                                                                                             178.05, 176.07, 150.05, 138.05, 132.04, 106.06
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  18      Hylocerenin         8.39         2.45    C30 H34 N2 O17     695.193      695.1899     −4.46     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [9,65]
                                                                                                                                   132.04, 106.6
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  19    Lampranthin-I *       8.41         2.45    C33 H32 N2 O15    697.1875      697.1861     −2.01     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [66]
                                                                                                                                   132.04, 106.6
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  20     Isophyllocactin      8.46         2.47    C27 H28 N2 O16    637.1512      637.1491      −3.3     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
                                                                                                                                   132.04, 106.6
         17-decarboxy-                                                                                    345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  21                          8.72         2.54    C29 H34 N2 O15    651.2032      651.2012     −3.07                                                                         [22,23]
         hylocerenin *                                                                                                176.07, 150.05, 138.05, 132.04, 106.06
          2-decarboxy-                                                                                    345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  22                          8.83         2.57    C23 H26 N2 O11    507.1609      507.1596     −2.56                                                                         [22,23]
             betanin                                                                                                  176.07, 150.05, 138.05, 132.04, 106.06
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
        Isolampranthin-
  23                          8.85         2.58    C33 H32 N2 O15    697.1875      697.1854     −3.01     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
               I
                                                                                                                                   132.04, 106.6
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  24     Isohylocerenin       8.88         2.59    C30 H34 N2 O17     695.193      695.1909     −3.02     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [22]
                                                                                                                                   132.04, 106.6
          17-decarboxy-                                                                                   345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  25                          9.21         2.69    C26 H28 N2 O14    593.1613      593.1588     −4.21
        isophyllocactin *                                                                                             176.07, 150.05, 138.05, 132.04, 106.06
          17-decarboxy-                                                                                   345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  26                          9.26         2.7     C29 H34 N2 O15    651.2032      651.2009     −3.53
        isohylocerenin *                                                                                              176.07, 150.05, 138.05, 132.04, 106.06
          2-descarboxy-                                                                                   345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  27                          9.38         2.73    C26 H28 N2 O14    593.1613      593.1587     −4.38                                                                         [22,23]
           phyllocactin                                                                                               176.07, 150.05, 138.05, 132.04, 106.06
Molecules 2024, 29, 5485                                                                                                                                                           11 of 24
Table 1. Cont.
                                        Relative                                                 Mass
                            Retention                Chemical       Theoretical    Observed
  #      Compound A                     Rt from                                                Accuracy                            Fragments                                Reference B
                            Time (Rt)                Formula        m/z [M+H]+    m/z [M+H]+
                                        Betanin                                                 (ppm)
          2-descarboxy-                                                                                   345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  28                          9.41         2.74    C26 H28 N2 O14    593.1613      593.1589     −4.05
        isophyllocactin *                                                                                             176.07, 150.05, 138.05, 132.04, 106.06
          2-decarboxy-                                                                                    341.07, 327.06, 313.08, 295.07, 277.07, 267.07, 253.06, 251.08,
  29                          10.06        2.93    C23 H22 N2 O11    503.1296      503.1277     −3.78                                                                           [51]
        xanneobetanin *                                                                                                   221.07, 195.09, 132.04, 106.06
                                                                                                          387.07, 341.07, 313.08, 299.10, 299.06, 287.08, 281.09, 269.09,
  30    Neophyllocactin *     10.13        2.95    C27 H26 N2 O16    635.1355      635.1327     −4.41     255.08, 253.09, 194.04, 178.05, 176.07, 166.05, 150.05, 132.04,       [22]
                                                                                                                                      106.06
            2,15,17-
  31     tridecarboxy-        10.43        3.04    C21 H24 N2 O7     417.1656      417.1648     −1.92             417.17, 349.11, 271.09, 255.11, 159.04, 130.03                [47]
          neobetanin *
         17-decarboxy-                                                                                    343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  32                          10.52        3.07    C26 H26 N2 O14    591.1457      591.1432     −4.23                                                                           [22]
        neophyllocactin *                                                                                         178.05, 176.07, 150.05, 138.05, 132.04, 106.06
                                                                                                          387.07, 341.07, 313.08, 299.10, 299.06, 287.08, 281.09, 269.09,
  33    Neohylocerenin        10.89        3.17    C30 H32 N2 O17    693.1774      693.1758     −2.31     255.08, 253.09, 194.04, 178.05, 176.07, 166.05, 150.05, 132.04,
                                                                                                                                      106.06
         17-decarboxy-                                                                                    343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  34                          11.04        3.22    C29 H32 N2 O15    649.1875      649.1852     −3.54                                                                           [22]
        neohylocerenin *                                                                                          178.05, 176.07, 150.05, 138.05, 132.04, 106.06
              2,17-
  35      bidecarboxy-        11.14        3.25    C22 H22 N2 O9     459.1398      459.1383     −3.27             297.08, 269.09, 251.08, 223.08, 195.09, 133.08                [51]
        xanneobetanin *
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  36     Lampranthin II       11.01        3.21    C34 H34 N2 O16    727.1981      727.1956     −3.44     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,    [59,66,67]
                                                                                                                                   132.04, 106.6
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
        Isolampranthin
  37                          11.34        3.31    C34 H34 N2 O16    727.1981      727.1948     −4.54     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
              II
                                                                                                                                   132.04, 106.6
          2-decarboxy-                                                                                    343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  38                          11.45        3.34    C29 H32 N2 O15    649.1875      649.1848     −4.16                                                                           [22]
        neohylocerenin                                                                                            178.05, 176.07, 150.05, 138.05, 132.04, 106.06
          2-decarboxy-                                                                                    343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  39                          11.62        3.39    C26 H26 N2 O14    591.1457      591.1438     −3.21                                                                           [22]
        neophyllocactin *                                                                                         178.05, 176.07, 150.05, 138.05, 132.04, 106.06
Molecules 2024, 29, 5485                                                                                                                                                             12 of 24
Table 1. Cont.
                                        Relative                                                    Mass
                            Retention                Chemical       Theoretical       Observed
  #      Compound A                     Rt from                                                   Accuracy                            Fragments                                Reference B
                            Time (Rt)                Formula        m/z [M+H]+       m/z [M+H]+
                                        Betanin                                                    (ppm)
                                                                                                             387.07, 341.07, 313.08, 299.10, 299.06, 287.08, 281.09, 269.09,
        Neolampranthin
  40                          11.64        3.39    C34 H32 N2 O16    725.1825          725.1794    −4.27     255.08, 253.09, 194.04, 178.05, 176.07, 166.05, 150.05, 132.04,
              II
                                                                                                                                         106.06
            2,15,17-
  41     tridecarboxy-        11.94        3.48    C21 H22 N2 O7     415.1499          415.1497    −0.48             415.14, 355.12, 347.09, 285.09, 185.04, 143.02               [51]
        xanneobetanin *
                                                                                Melocactin-type
                                                                                                             389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  42       Melocactin         4.81         1.4     C30 H36 N2 O18    713.2036          713.2005    −4.35     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,     [68,69]
                                                                                                                                      132.04, 106.6
                                                                                                             389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  43     Isomelocactin        7.18         2.09    C30 H36 N2 O18    713.2036          713.2009    −3.79     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [68]
                                                                                                                                      132.04, 106.6
                                                                                Apiocactin-type
                                                                                                             389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  44       Apiocactin         7.21         2.1     C29 H34 N2 O17     683.193          683.1904    −3.81     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [69]
                                                                                                                                      132.04, 106.6
                                                                                                             389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  45      Isoapiocactin       7.91         2.31    C29 H34 N2 O17     683.193          683.1911    −2.78     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
                                                                                                                                      132.04, 106.6
                                                                                                             389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
         2′ -O-apiosyl-
  46                          8.31         2.42    C32 H36 N2 O20    769.1934          769.1912    −2.86     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,     [65,69]
         phyllocactin *
                                                                                                                                      132.04, 106.6
                                                                                                             389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
          2′ -O-apiosyl-
  47                          8.76         2.55    C32 H36 N2 O20    769.1934          769.1903    −4.03     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [65]
        isophyllocactin *
                                                                                                                                      132.04, 106.6
        17-decarboxy-2′ -
                                                                                                             345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  48      O-β-apiosyl-        9.89         2.88    C31 H36 N2 O18    725.2036          725.2011    −3.45
                                                                                                                         176.07, 150.05, 138.05, 132.04, 106.06
         phyllocactin *
Molecules 2024, 29, 5485                                                                                                                                                          13 of 24
Table 1. Cont.
                                        Relative                                                 Mass
                            Retention                Chemical       Theoretical    Observed
  #      Compound A                     Rt from                                                Accuracy                            Fragments                                Reference B
                            Time (Rt)                Formula        m/z [M+H]+    m/z [M+H]+
                                        Betanin                                                 (ppm)
        17-decarboxy-2′ -
                                                                                                          345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  49      O-β-apiosyl-        10.19        2.97    C31 H36 N2 O18    725.2036      725.2007     −4.00                                                                          [65]
                                                                                                                      176.07, 150.05, 138.05, 132.04, 106.06
        isophyllocactin *
                                                                                  Gomphrenin-type
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  50     Gomphrenin-I         4.06         1.18    C24 H26 N2 O13    551.1508      551.1481      −4.9     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,     [59,70]
                                                                                                                                   132.04, 106.6
          2-decarboxy-                                                                                    343.09, 299.10, 297.08, 281.09, 269.09, 255.08, 253.09, 194.04,
  51                          6.71         1.96    C23 H24 N2 O11    505.1453      505.1431     −4.36                                                                          [71]
        xangomphrenin *                                                                                           178.05, 176.07, 150.05, 138.05, 132.04, 106.06
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
        Isogomphrenin-
  52                          6.87          2      C24 H26 N2 O13    551.1508      551.1486     −3.99     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [72]
              I
                                                                                                                                   132.04, 106.6
                                                                                                          387.07, 341.07, 313.08, 299.10, 299.06, 287.08, 281.09, 269.09,
  53    Neogomphrenin         8.58         2.5     C24 H24 N2 O13    549.1351      549.1327     −4.37     255.08, 253.09, 194.04, 178.05, 176.07, 166.05, 150.05, 132.04,
                                                                                                                                      106.06
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  54    Gomphrenin-IV         10.91        3.18    C35 H36 N2 O17    757.2087      757.2065     −2.91     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,     [50,73]
                                                                                                                                   132.04, 106.6
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
        Isogomphrenin-
  55                          11.16        3.25    C35 H36 N2 O17    757.2087      757.2071     −2.11     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
              IV
                                                                                                                                   132.04, 106.6
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  56    Gomphrenin-III        11.33        3.3     C34 H34 N2 O16    727.1981      727.1949      −4.4     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,     [50,72]
                                                                                                                                   132.04, 106.6
                                                                                                          389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
        Isogomphrenin-
  57                          11.62        3.39    C34 H34 N2 O16    727.1981      727.1957      −3.3     253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
              III
                                                                                                                                   132.04, 106.6
                                                                                                          387.07, 341.07, 313.08, 299.10, 299.06, 287.08, 281.09, 269.09,
        Neogomphrenin
  58                          11.59        3.38    C35 H34 N2 O17     755.193      755.1914     −2.12     255.08, 253.09, 194.04, 178.05, 176.07, 166.05, 150.05, 132.04,
             IV
                                                                                                                                      106.06
Molecules 2024, 29, 5485                                                                                                                                                                14 of 24
Table 1. Cont.
                                         Relative                                                      Mass
                             Retention                Chemical       Theoretical      Observed
  #      Compound A                      Rt from                                                     Accuracy                            Fragments                                Reference B
                             Time (Rt)                Formula        m/z [M+H]+      m/z [M+H]+
                                         Betanin                                                      (ppm)
                                                                                                                387.07, 341.07, 313.08, 299.10, 299.06, 287.08, 281.09, 269.09,
        Neogomphrenin-
  59                           11.92        3.48    C34 H32 N2 O16    725.1825         725.1798        −3.72    255.08, 253.09, 194.04, 178.05, 176.07, 166.05, 150.05, 132.04,
             III
                                                                                                                                            106.06
                                                                                       Glabranin-type
                                                                                                                389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  60        Glabranin          3.15         0.92    C30 H36 N2 O18    713.2036         713.2015        −2.94    253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [74]
                                                                                                                                         132.04, 106.6
                                                                                                                389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  61    Coumglabranin *        10.59        3.09    C39 H42 N2 O20    859.2403         859.2377        −3.03    253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,      [74]
                                                                                                                                         132.04, 106.6
                                                                                                                389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  62    Isocoumglabranin *     10.85        3.16    C39 H42 N2 O20    859.2403         859.2371        −3.72    253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
                                                                                                                                         132.04, 106.6
                                                                                                                387.07, 341.07, 313.08, 299.10, 299.06, 287.08, 281.09, 269.09,
  63    Neocoumglabranin * 11.29            3.29    C39 H40 N2 O20    857.2247         857.2208        −4.55    255.08, 253.09, 194.04, 178.05, 176.07, 166.05, 150.05, 132.04,
                                                                                                                                            106.06
                                                                                        Unknown type
                                                                                                                389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  64      Unknown-1 *          8.83         2.57    C35 H42 N2 O21    827.2353         827.2316        −4.47    253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
                                                                                                                                         132.04, 106.6
                                                                                                                389.09, 345.10, 343.09, 299.10, 297.08, 281.09, 269.09, 255.11,
  65      Unknown-2 *          9.23         2.69    C35 H42 N2 O21    827.2353         827.2328        −3.02    253.09, 194.04, 166.05, 178.05, 176.07, 166.05, 150.05, 138.05,
                                                                                                                                         132.04, 106.6
                                                                                                                345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  66      Unknown-3 *          10.27        2.99    C34 H42 N2 O19    783.2455         783.2422        −4.21
                                                                                                                            176.07, 150.05, 138.05, 132.04, 106.06
                                                                                                                345.10, 299.10, 297.08, 281.09, 255.11, 253.09, 194.04, 178.05,
  67      Unknown-4 *          10.54        3.07    C34 H42 N2 O19    783.2455         783.2428        −3.45
                                                                                                                            176.07, 150.05, 138.05, 132.04, 106.06
                                                                                         Betaxanthin
                                                                                   Positively charged-type s
                                                                                                                287.12, 261.13, 256.89, 211.07, 194.04, 166.05, 150.05, 138.05,
  68     Histamine-bx *        9.04         2.64    C14 H16 N4 O4     305.1244         305.1232        −3.93
                                                                                                                                    132.04, 130.05, 106.06
Molecules 2024, 29, 5485                                                                                                                                                          15 of 24
Table 1. Cont.
                                       Relative                                                  Mass
                           Retention               Chemical       Theoretical    Observed
  #      Compound A                    Rt from                                                 Accuracy                            Fragments                                Reference B
                           Time (Rt)               Formula        m/z [M+H]+    m/z [M+H]+
                                       Betanin                                                  (ppm)
                                                                                Polar uncharged-type
                                                                                                          323.08, 277.08, 249.08, 233.09, 231.07, 211.07, 194.04, 166.05,
  69     Glutamine-bx *       1.2         0.35    C14 H17 N3 O7    340.1139       340.1129       −2.94                                                                         [15]
                                                                                                                      150.05, 138.05, 132.04, 130.05, 106.06
                                                                                                          269.09, 267.09, 211.07, 194.04, 166.05, 150.05, 138.05, 132.04,
  70     Threonine-bx *      1.52         0.44    C13 H16 N2 O7     313.103       313.1022       −2.56                                                                         [15]
                                                                                                                                  130.05, 106.06
                                                                                                          255.09, 253.09, 211.07, 194.04, 166.05, 150.05, 138.05, 132.04,
  71       Serine-bx *       4.77         1.39    C12 H14 N2 O7    299.0874       299.0861       −4.35                                                                         [15]
                                                                                                                                  130.05, 106.06
                                                                                 Hydrophobic-type
                                                                                                          331.12, 239.11, 285.12, 283.10, 239.11, 211.07, 194.04, 166.05,
  72      Glycine-bx *       6.49         1.89    C11 H12 N2 O6    269.0768       269.0758       −3.72                                                                         [15]
                                                                                                                      150.05, 138.05, 132.04, 130.05, 106.06
                                                                                                          315.09, 269.09, 211.07, 194.04, 166.05, 150.05, 138.05, 132.04,
  73    Methionine-bx *       7.3         2.13    C14H18N2O6S      343.0958       343.0943       −4.37                                                                         [15]
                                                                                                                                   130.05, 106.06
                                                                                                          267.13, 265.11, 237.12, 221.12, 219.11, 211.07, 194.04, 166.05,
  74       Valine-bx *       7.97         2.32    C14H18N2O6       311.1238       311.1229       −2.89                                                                         [15]
                                                                                                                      150.05, 138.05, 132.04, 130.05, 106.06
                                                                                                          237.08, 211.07, 194.04, 166.05, 150.05, 138.05, 132.04, 130.05,
  75      Alanine-bx *       8.16         2.38    C12H14N2O6       283.0925       283.0915       −3.53                                                                         [15]
                                                                                                                                      106.06
                                                                                                           265.11, 263.10, 235.1, 219.11, 217.09, 211.07, 194.04, 166.05,
  75       Proline-bx *      9.02         2.63    C14 H16 N2 O6    309.1081       309.1068       −4.21                                                                         [15]
                                                                                                                      150.05, 138.05, 132.04, 130.05, 106.06
                                                                                                          279.13, 251.13, 235.14, 233.12, 211.07, 194.04, 166.05, 150.05,
  77     Isoleucine-bx *     9.87         2.88    C15 H20 N2 O6    325.1394       325.1384       −3.08                                                                         [15]
                                                                                                                          138.05, 132.04, 130.05, 106.06
                                                                                                          281.14, 279.13, 251.13, 235.14, 233.12, 211.07, 194.04, 166.05,
  78      Leucine-bx *       10.01        2.92    C15 H20 N2 O6    325.1394       325.1385       −2.77                                                                         [15]
                                                                                                                      150.05, 138.05, 132.04, 130.05, 106.06
                                                                                                          269.07, 223.07, 211.07, 194.04, 166.05, 150.05, 138.05, 132.04,
  79    Tryptophan-bx *      10.12        2.95    C20 H19 N3 O6    398.1347       398.1331       −4.02                                                                         [15]
                                                                                                                                   130.05, 106.06
        Phenylalanine-                                                                                    315.13, 313.11, 269.12, 267.11, 223.12, 211.07, 194.04, 166.05,
  80                         10.15        2.96    C18 H18 N2 O6    359.1238       359.1225       −3.62                                                                         [15]
             bx *                                                                                                     150.05, 138.05, 132.04, 130.05, 106.06
        g-aminobutyric                                                                                    253.11, 251.10, 233.09, 211.07, 194.04, 166.05, 150.05, 138.05,
  81                         2.82         0.82    C13 H16 N2 O6    297.1081       297.1069       −4.04
           acid-bx *                                                                                                          132.04, 130.05, 106.06
                                                                                                          255.11, 211.07, 194.04, 166.05, 150.05, 138.05, 132.04, 130.05,
  82     Dopamine-bx *       7.67         2.24    C17 H18 N2 O6    347.1238       347.1226       −3.46                                                                         [15]
                                                                                                                                      106.06
                                                                                                          287.13, 285.12, 239.11, 211.07, 194.04, 166.05, 150.05, 138.05,
  83     Tyramine-bx *       8.64         2.52    C17 H18 N2 O5    331.1288       331.1274       −4.23
                                                                                                                              132.04, 130.05, 106.06
Molecules 2024, 29, 5485                                                                                                                                                                                                 16 of 24
Table 1. Cont.
                                         Relative                                                                   Mass
                            Retention                     Chemical          Theoretical         Observed
  #      Compound A                      Rt from                                                                  Accuracy                                    Fragments                                         Reference B
                            Time (Rt)                     Formula           m/z [M+H]+         m/z [M+H]+
                                         Betanin                                                                   (ppm)
          3-methoxy-                                                                                                               315.13, 269.12, 211.07, 194.04, 166.05, 150.05, 138.05, 132.04,
  84                          8.98          2.62        C18 H20 N2 O6         361.1394           361.1383           −3.05
         tyramine-bx *                                                                                                                                     130.05, 106.06
               5-
                                                                                                                                   283.15, 237.15, 211.07, 194.04, 166.05, 150.05, 138.05, 132.04,
  85    hydroxynorvaline-     9.89          2.88        C14 H18 N2 O7         327.1187           327.1179           −2.45
                                                                                                                                                           130.05, 106.06
              bx *
          Methionine                                                                                                               267.11, 223.12, 211.07, 194.04, 166.05, 150.05, 138.05, 132.04,
  86                          10.09         2.94        C14 H18 N2 O7 S       359.0907           359.0893            −3.9
         sulfoxide-bx *                                                                                                                                    130.05, 106.06
                                 A The prefix “xan” is equivalent to 2,3-dehydro, while “neo” is equivalent to 14, 15-dehydro, as described by Starzak et al. [75]. * Tentatively identified.   B   A reference to the identified
                                 betalain.
MoleculesMolecules
          2024, 29,2024,
                    548529, x FOR PEER REVIEW                                                                                             1717ofof24
                                                                                                                                                   24
                                   Figure 7. Resolving the betalains discovered in red pitaya. (A) The color circle scale indicates the
                                         Figure 7. Resolving the betalains discovered in red pitaya. (A) The color circle scale indicates the
                                   change in the parent ion base peak measurement area for betalains. (B) Chromatogram of red pitaya
                                         change in the parent ion base peak measurement area for betalains. (B) Chromatogram of red pitaya
                                   at 540atnm.
                                            540 The
                                                nm. peak      displays
                                                       The peak         the the
                                                                  displays  retention  time
                                                                                retention    and
                                                                                          time   label
                                                                                               and     number
                                                                                                   label numberofofbetalain.
                                                                                                                    betalain. Table
                                                                                                                              Table 11 contains  the
                                                                                                                                       contains the
                                   complete   list oflist
                                         complete      identified   betalains.
                                                          of identified betalains.
                                    Figure8.8.Spectra
                                   Figure       Spectra of
                                                        of unknown-2
                                                            unknown-2 betacyanin.
                                                                          betacyanin.(A)
                                                                                      (A)MS/MS
                                                                                          MS/MS spectrum obtained
                                                                                                  spectrum         withwith
                                                                                                             obtained   fragmentation  of of
                                                                                                                            fragmentation
                                    ion m/z 827.23 with HCD. (B) MS/MS spectrum obtained with the ion m/z 827.23 fragmented with
                                   ion m/z 827.23 with HCD.        (B) MS/MS spectrum obtained with the ion m/z 827.23 fragmented with
                                    CID at 35 eV. (C) MS      3 spectrum obtained with the ion m/z 695.19 fragmented with CID at 35 eV
                                                           3 spectrum obtained with the ion m/z 695.19 fragmented with CID at 35 eV (827.23
                                   CID  at 35  eV. (C) MS
                                    (827.23 CID35  695.19 CID35 ). (D) MS4 spectrum obtained with fragmentation of the ion m/z
                                                                            4 spectrum obtained with fragmentation of the ion m/z 551.15 with
                                    551.15→
                                   CID35       695.19
                                            with   CIDCID35
                                                       at 35 eV →).(827.23
                                                                     (D) MSCID35   695.19 CID35  551.15 CID35). Core ions are high-
                                   CID  at 35ineV
                                    lighted        (827.23 CID35 → 695.19 CID35 → 551.15 CID35→). Core ions are highlighted in black.
                                                black.
                           Ultrapure Helium gas (>99.999%) was obtained from a local supplier (INFRA, Merida,
                           Mexico). N2 was generated in-house using an NM32LA PEAK Generator (PEAK Scientific
                           System, Inchinnan, Scotland, UK).
                           3.2. Fruit Juice Extraction and Matrix Solid-Phase Dispersion Extraction (MSPD)
                                Dragon fruit (Hylocereus costaricensis) juice was obtained using an electronic mill.
                           Subsequently, the tissue debris was separated from the juice and then discharged. After
                           collection, the juice was frozen and kept at −80 ◦ C until it was lyophilized for 48 h (chamber
                           temperature −50 ◦ C and vacuum pressure −460 mmHg). The dry material was kept in
                           darkness at −20 ◦ C until it was used.
                                Total betalains were extracted from 100 mg of dry material using the Matrix Solid-
                           Phase Dispersion (MSPD) method as described by Araujo-Leon et al., 2023 [37]. A homoge-
                           nous mix of 400 mg of BondElut-C18 (Agilent Technologies, San Jose, CA, USA) and 100 mg
                           of dry material was packed in an empty SPE cartridge with frits to minimize diffusion.
                           Bound betalains were eluted with 9 mL of H2 O with 0.1% acetic acid and then with 9 mL
                           of MeOH:H2 O (1:1, v/v) with 0.1% acetic acid using a vacuum manifold system (Visiprep
                           SPE Vacuum Manifold, Sigma-Aldrich, Burlington, MA, USA). Separately, the eluents were
                           collected and evaporated. The residues were resuspended in 0.6 mL of H2 O with 0.1%
                           acetic acid and transferred to an amber vial (MS-grade) for LC-MS analyses.
                                 charge stabilization, and radical isomerization. Fragment peaks and precursor masses were
                                 deposited in Table S3.
                                 4. Conclusions
                                      Collectively, our compiled database of betalains, as provided in the Supplementary
                                 Materials of this manuscript, and the mass spectrometry fingerprints of betanin, beet-
                                 root extract, and red pitaya extract revealed information about betalain fragmentation.
                                 These data can aid in interpreting the mass spectra of betalains, which ultimately not
                                 only improves the identification of betalains but also serves as a guide for mass spectra
                                 annotation. The aglycone betacyanin-derived ions with m/z 389 for betacyanins, m/z 345
                                 for betalain derivatives, and m/z 343 for neobetanin variants can be used for the rapid
                                 identification of decarboxylated and dehydrogenated betalains; further automation on
                                 parallel metabolomics studies will aid in increasing the annotation quality of metabolite
                                 identification. The ion with m/z 211.07 was characteristic of betaxanthins. As betalains are
                                 responsible for biological traits in Caryophyllales plants or for nutritional and biological
                                 activities seen in organisms feeding on raw or processed food containing betalains, further
                                 investigation will benefit from the improved identification of betalains. For red pitaya be-
                                 talains, given the catalog has grown to 86, it is crucial to conduct more research into the
                                 diversity and abundance of betalains in different pitaya varieties with distinct flesh and
                                 skin colors.
                                 Supplementary Materials: The following supporting information can be downloaded at: https:
                                 //www.mdpi.com/article/10.3390/molecules29225485/s1. Table S1: Database of betalains made
                                 in this study consisting of structures and spectral libraries based on the use of in silico fragmenta-
                                 tion with MassFrontier (Thermo Scientific) software; Table S2: Product ions of betanin fragmented
                                 with HCD at 50 eV with a relative abundance of more than 5% highlighted in this study as fin-
                                 gerprints of betalains; Table S3: Chromatographic and mass spectrometry data for betalains from
                                 Beta vulgaris extract. References: [2,15,36,37,40,43,50,57–60,63,65–70,73,74,76–104] are cited in the
                                 Supplementary Materials.
                                 Author Contributions: Conceptualization: J.A.A.-L. and V.A.-H.; methodology, formal analysis and
                                 investigation: J.A.A.-L., R.O.-A., L.G.B.-A., I.S.-d.P. and S.R.P.-S.; software: J.A.A.-L. and V.A.-H.;
                                 validation: R.O.-A., L.G.B.-A., I.S.-d.P. and S.R.P.-S.; supervision: V.A.-H. and I.S.-d.P.; visualization:
                                 J.A.A.-L., I.S.-d.P. and V.A.-H.; resources: I.S.-d.P. and V.A.-H.; writing—original draft: J.A.A.-L.;
                                 writing—review and editing: I.S.-d.P. and V.A.-H. All authors have read and agreed to the published
                                 version of the manuscript.
                                 Funding: CONAHCYT funded this research, grant FORDECYT-PRONACES-15319/2020.
                                 Institutional Review Board Statement: Not applicable.
                                 Informed Consent Statement: Not applicable.
                                 Data Availability Statement: Data are contained within the article and Supplementary Materials.
                                 Acknowledgments: Sánchez-del Pino I., Peraza-Sánchez S.R., and Aguilar-Hernández V. thank
                                 CONAHCYT for support under the project FORDECYT-PRONACES-15319/2020. Araujo-León J.A.
                                 thanks CONAHCYT for PhD scholarship 800585.
                                 Conflicts of Interest: The authors declare no conflicts of interest.
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