Biological Molecules
Biological Molecules
As Biology ( 9700)
June 2025
11/ 11/2024
Part 1
Carbohydrates ( mono and disaccharides )
Class work
1. Definition of macromolecule / example
2. Definition of polymer / example
3. Name monomer or each polymer
4. Comparison between mono / di / poly
5. Draw ring structure of alpha / beta glucose and beta fructose
6. Mention the type of bond and monomer of maltose and sucrose
Biological molecules
Fats
Carbohydrates ( 3 structures alpha glucose , beta glucose , beta fructose )
Proteins ( basic structure of amino acid )
Fatty acids and
Fats / lipids ( 3 fatty acids and glycerol ….recognise )
glycerol -
Polymer Made up of many repeated subunits which are similar or identical to each other
DNA / RNA
Amino acids Nucleotide
Monosaccharides
Example glucose
1. Carbohydrates Macromolecule and polymer
C: H:O
1. Formula
1:2: 1
2. Solubility
3. Reducing or not
11 or more
4. Taste
5. glycosidic bond Disaccharides Polysaccharides
Monosaccharides
Glucose C6H12O6
6 Study how to draw the ring structure
CH2OH
H
P1 5
&C H
H H
1 Alpha glucose
4
H
f
C OH OH H
OH 2
OH
3
HO
3
C H
H OH
C OH
4
H 6
CH2OH
C OH
T
H
5
H OH
H
I
OH Beta glucose
G
H C U
H
OH H
OH
H 3 f
&
OH
H
- C OH CH2OH
2
C
I
OH CH2OH
H 3 I
H
Y
HO C H
3
OH H 6;10
U
H C OH
5
H C OH
C OH
C
H
H Study how to draw the ring structure
CH2OH CH2OH 6
H 5
H OH CH2OH OH
H j
I 2
2 j
H H
H OH
OH OH
4
CH2OH
H Y H
OH
3
H H U
OH
3 2 3 2
OH
.
2
OH H
H OH H OH
Alpha glucose Beta glucose
Beta fructose
Disaccharides 2 sugar units attached with a glycosidic bond
OH
6
5 CH2OH
H
5
H H H H H
H H j 2
U 2
U 2 H
OH CH2OH
OH H OH OH OH H OH OH It H It
32
OH OH
2 3 2 Y
3
OH
H OH H OH OH OH H
It
Hydrolysis CH2OH I
CH2OH
+H2O Condensation reaction
12
H
Y
-H2O H
OH CH2OH
OH OH
CH2OH OH OH
CH2OH
5 It
OH OH
5 H H
H H H
10OH
H 2 Hydrolysis
4. Reducing sugar OH OH H
Check list
1. Definitions of macromolecules and polymers
2. Comparison between mono , di , polysaccharides in terms of
A) formula
B) taste
C) solubility
D) reducing or non
E) glycosidic bond or not
3. Draw ring structure of alpha glucose , beta glucose and beta fructose
4.know that maltose made from 2 alpha glucose bond by 1, 4 alpha glycosidic bond
5.know that sucrose made from alpha glucose and beta fructose bond by 1, 2 glycosidic bond
Maltose Sucrose
Disaccharide Disaccharide
Monomer ..alpha glucose Monomer..alpha glucose , beta fructose
1, 4 glycosidic bond 1, 2 glycosidic bond
Condensation Condensation reaction
Reducing sugar Non reducing sugar
13/11
Part 2
Polysaccharides
Class work
1. how to carry test for reducing sugars
2. name the two polysaccharides of which starch is
made from
3. Compare between the 2 polysaccharides of starch
4. State the advantages of having a highly branched
molecule
5. Describe structure of cellulose
6. How cellulose have a structural function
7. Compare between cellulose and glycogen
Brain storm on what has been taken before With free functional groups /
ketone group
1. Mono saccharides
Alpha glucose ………beta glucose ……..beta fructose
CH2OH CH2OH OH
CH2OH
H H OH
H H H
H H OH
OH OH H
OH H H CH2OH
OH OH
H OH OH
H
OH
H
2. Disaccharides
Maltose ……………………..sucrose
# -
Tox2 ht
H
H OH
H2 4
OH H
·
OH OH
OH
3 2 3
2
OH
3
OH Oll
OH H Alpha glucose
H Alpha glucose
Alpha glucose
1. How to test for reduing sugar :
+2 +2
Reducing sugar + Cu Oxidised sugar + Cu
Reduced to
Sucrose is a non reducing sugar with its free functional group involved in glycosidic bond so no reducing end
1. Heating of sample with dilute HCL …hydrolysis to glycosidic bond ..release free monosaccharides ( glucose
and fructose ) ..with free functional group
2. KOH neutralise acid
3. adding Benedict’s reagantr and heat at 95 C , if brick red color appears , so this inicated the presence of
sucrose
1. Test with Benedict’s reagent so if gives negative result remaining blue color …so no reducing sugars
Sucro
2. Heat with dilute HCL , neutralise with KOH , then add Benedict’s reagent and heat ,,, if +very
se
only brick red color appears so ,,,,,sucrose is present
1. Do Benedict;s ( reagent + heat ) ..brick red
• reducing sugar ……are present
• Glucose , fructose ,maltose , lactose , galactose
Reducing sugars
2. HCL , heat , neutralise with KOH , then add benedict’s reagent
No reducing sugars
Positive brick red Colour
Or both
Can either be reducing or non reducing sugar
Amylose Amylopectin
I
Monomer is alpha glucose
Linked by 1, 4 glycosidic bond
Unbranched
Branched
Spiral / helical
1. Polysaccharide
2. Water insoluble
3. Monomer is alpha glucose
4. 1, 4 and 1, 6 glycosidic bond
5. Non reducing sugars
Break
6. Both starch and glycogen have metabolic function
6;00
• its polysaccharide
• with monomer beta glucose
• linked by 1, 4 glycosidic bond
• each glucose molecule is found alternating at 180 degree relative to the other
• So form a flat ribbon S
• unbranched ( linear / straight chain ) Microfibrils
... ...
S S
• So molecules lie parallel to each other .
↓
...g
Cellulose have a structural function
-S
• formed from beta glucose monomer
• Linked by 1, 4 glycosidic bond , where each glucose molecule is found alternating at 180 degree relative to the
other
• Forming a flat ribbon
• unbranched ( straight / linear chain ) polymer …allowing cellulose molecules to lie // to each other with many oH
groups projecting in different direction
• Allow the formation of many hydrogen bonds between cellulose molecules to give // chains ..forming microfibrils
• Many microfibrils together held with more hydrogen bonds forming cellulose fibres
• Fibres found at right angles ( criss cross together ) forming cellulose cell wall with high tensile strength and
unstretchable prevent plant cell wall from busting , freely permeable ( gaps ) , insoluble
Cellulose
Strength and support
Prevent the cell from bursting
Helps keep its shape / turgid
Beta glucose
1, 4 glycosidic
Cellulose
Hydrogen bonds
Microfibrils
Hydrogen bonds
Fibres
Cell wall
Glycogen Cellulose
Polysaccharides
Monomer is glucose
Water insoluble
Both have glycosidic bond
• no hydrogen bonds between glycogen molecules • hydrogen bonds between cellulose molecules
Water molecules O A) water is dipolar with electrons being unequally distributed / shared
between oxygen and hydrogen ( oxygen more electronegative than
i S
↓
hydrogen )
. Oxygen has a slight / small / partially negative charge
.....S While hydrogen has slight / small / partially positive charge .
3 S
B) hydrogen bond is formed between water molecules
↓
· Each oxygen atom forms 2 hydrogen bonds and each hydrogen atom
forms one hydrogen bond
↓
S
C) hydrogen bond is a weak bond
..........
Y
OH
S
HH &
+
x D
.
He
S
Tt
·
.
O
of Y
x8
N +
I
o
S
Cl-
Na+
O
O
f
Y .....
+S
&
*
&
-
H S O
B + +
O
-
S
Water dissolve ions where the + hydrogen atom will be attracted to -ve ion and the - Oxygen atom will be attracted to +ve ion f
18/11/2024 6;10
Lipid and types of bonds in protein
Class work
Triglyceride
Phospholipid
3 fatty acids
2 fatty acids
Glycerol
Glycerol
P
R_OH. + R-COOH ………..R_ C _O_R Glycerol + 2 fatty acids + 1 phosphate group
Ester bond
Molecules
Explain why lipids are water insoluble ? Charges / ions …soluble in water..hydrophilic
Polar ….OH / NH/ SH / CO..soluble in water ..hydrophilic as they
1. Elements C, H, O can form hydrogen bond with water
H C OH
H. H. H H. H. H H. H. H
C OH HO C C. C. C. C. C. C. C. C. C
H
H. H. H H. H. H H. H. H I
H C OH
Hydrocarbon
H Hydrophobic
Non polar fatty acid tail
estenork
.
H H. H. H H. H. H H. H. H
C OH HO C C. C. C. C. C. C. C. C. C H
H
H. H. H H. H. H H. H. H I H C O
im
C
H C OH H. H. H H. H. H H. H. H Condensation reaction O
H C O "m
C
HO C C. C. C. C. C. C. C. C. C
H C OH O
H. H. H H. H. H H. H. H -3H20 "M
H C O C
H
I
H. H. H H. H. H H. H. H
H
HO C C. C. C. C. C. C. C. C. C
Triglyceride with 3 ester bonds
H. H. H H. H. H H. H. H
I
Two types of fatty acids
da
Hates water
Enzymes
Part of cell membrane H
Some hormones ( insulin and glucagon)
Collagen ..in walls of blood vessels
N. C. C. OH
L-Carbon
H Carboxyl group
R
Antibodies
Keratin in hairs and nails Amine group
Haemoglobin
L-Carbon
H Carboxyl group R
-
R
H
L-Carbon
R -
H
Amine group
Carboxyl group
Amine group R H
H
Condensation
H
N C C N C C OH
Amine group H Carboxyl
R R
8
..... H
H
8
H It It
+ H2O
N. C. C. N. C. C. OH H
N C C N C C OH
-
L-Carbon
-
H L-Carbon
R H
Carboxyl group
Amine group
R Amine group H Carboxyl
R R
....
Bonds involving R group interaction
Hydrophobic
Hydrogen bonds
interaction
Between polar R groups Ionic bonds
Disulfide bond
NH, , SH , OH , CO Interaction
Between ionised R groups Between cysteine
Ionised NH3+ of R group of between 2
Between R groups amino acids
one amino acid and ionised hydrophobic non
with Carboxyl and
carboxylic acid group COO- of polar R groups
amine groups
R group of another amino acid .
#
1. R group charged ….ionic
2. R group polar …hydrogen
3. R group non polar …hydrophobic interaction
4. R group is containing S ..disulphide
C OH
Carboxyl
COO
-
C -
Carboxylic acid
Carbonyl group
group
20/ 11/ 2024
Part 4
Protein structure
Different types of protein
1. Classwork :
2. describe primary structure
3. Describe secondary structure
4. Describe tertiary structure
5. Describe quaternary structure
6. Name the bonds involved in each protein level
7. Describe the structure of haemoglobin
8. Desctribe structure of collagen
9. compare between globular and fibrous protein
2 protein structure
B 2. Secondary structure
Involves hydrogen bonds between the oxygen of carbonyl group C=O of one amino acid and the H of the amine
NH group of another amino acid with no R group involvement ( within same polypeptide )
Beta pleated sheets are flat sheets , where the hydrogen bonds Has alpha helix which is held by hydrogen
are formed between the Oxygen of a carbonyl group of one bonds between amine group of one amino
amino acid and H of amine group of another amino on acid and carbonyl group three or four amino
adjacent part of the polypeptide acids apart in same polypeptide .
C Tertiary structure
Over all folding and coiling of a polypeptide chain into a specific 3D shape
Maintained by R group interactions and bonds :
Quaternary structure:
R groups
Ionic , hydrogen , disulfide ,
hydrophobic interaction
Types of proteins 1. Globular
R
2. Fibrous
P
=
P22
A . Globular proteins i -
R
R
-
~R
Example as haemoglobin
B
Iron ion
Contain iron ion attached to porphyrin ring to bind with oxygen molecules forming oxyhaemoglobin
Hb + 4O2 …….HBO8
4 polypeptides with 4 haem groups attach to 4 oxygen molecules ( 8 oxygen atoms )
B. Fibrous proteins Simpler structure , so more stable to changes in pH and temperature
4
.
i
N _C _C_OH
is
Collagen molecules
Helix are tightly packed /
Small R group lie // to each other
three polypeptides closely with cross links
formed between
associated.
Poly peptide is found in form collagen molecules )
Class work :
1. Explain the importance of water as solvent
2. Explain why water has high melting and boiling point
3. Explain the importance of water having high surface tension
4. Explain why water has high specific heat capacity
5. Explain the importance of water having high specific heat capacity
6. Explain why water has High latent heat of vaporisation
7. Explain the importance of water having high latent heat of
vaportaisation
8. Explain importance of water having low density at -4C
1. Solvent
Dipolar + describe
2. High melting and boiling points
3. High surface tension
Hydrogen bonds 4. High specific heat capacity
5. High latent heat of vaporisation
Density below -4C 6. Water density
Collagen
Water
. Dipolar
2. Each water molecule has a. SOxygen and a.+ SHydrogen atom .
-
3. So can form hydrogen bond with each other where …hydrogen of one
water molecule forms a hydrogen bond with-Oxygen of another water
molecule , SOxygen forms two hydrogen bonds with 2 different water
-
molecules .
Secondary structure
nig
It
2C
#n 2C
I is
Tertiary structure
-SS 6S
H ………..NH / CO/ OH
Properties of Water molecule
S
A) solvent
I
·
*
S
1. Dipolar , unequal distribution of electrons
2. each water molecule has a slightly / partially / small negative oxygen atom and slightlly / partially / small
postively charged hydrogen
3. Dissolve ions where slightly negative oxygen atom attract +vely charged ions ( cation ) and slightly positive
hydrogen atom attract -ve charged ion ( anion ) and dissolve / form hydrogen bonds with polar molecules
( OH / NH / SH / CO) -
S
-
S
-
P
A) tension of surface of water by attraction forces between water molecules ( cohesion ) ..allow
animals to move / stand on water surface .
B) cohesion ..force by which water molecules stick together by hydrogen bonds
C) adhesion …force of attraction between water molecules and other different miolecules Break
5;47
High specific heat capacity : Amount of heat needed to change the temperature
High latent heat of vaporisation Latent heat : Amount of heat needed to change the state
Heat energy needed to break down the hydrogen bonds between the water molecules to change the state from
liquid to gas ,,,latent heat of vaprorisation
High latent heat of vaporisation …..due to high specific heat capacity …..due to the presence of many
hydrogen bonds …..so water needs large amount of heat energy to break down the hydrogen bonds
1. Plays a role in decreasing body temperature ( by evaporation of sweat using excess latent heat ) with
reducing risk of dehydration
2. Plays role in cooling down the plant through transpiration without risk of losing to much water
Water density