Molecular Genetics: Chapter Preview
Molecular Genetics: Chapter Preview
Molecular genetics
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e-aristo.hk/r/
bioccfc27.e
In Hong Kong, about one in 4000 newborn babies # suffers from inborn errors of
metabolism (IEMs). IEMs are genetic disorders caused by mutations of genes. The
patients cannot produce some metabolically important proteins (e.g. enzymes). If left
untreated, IEMs can lead to serious health problems and even death.
(# Source: The Department of Obstetrics and Gynaecology of The Chinese University of Hong Kong)
Think about …
1. How are proteins produced in our body?
2. What is a mutation? What causes mutations? Answer
The code is universal. The same triplet code codes for the same
amino acid in all species.
triplet codes on
DNA strand
specify
amino acids /
start stop
signal
same amino acids
triplet code
degenerate code 27- 3
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27 Molecular genetics
nucleus
DNA
Transcription
mRNA
cytoplasm polypeptide
Translation
ribosome
Link it
All body cells of an organism have the same DNA and thus the
In a multicellular organism, cells same genes. However, in any one type of cell, only some genes are
have specific functions because
they make different proteins. They ‘turned on’ (or expressed)—the rest are inactive. Once a gene is
make different proteins because expressed, the protein product of that gene is usually made.
different genes are expressed in Therefore, gene expression and protein synthesis are often
different cell types.
considered the same process.
1. Transcription
Transcription is the synthesis of mRNA using part of the DNA as a
template. The process occurs in the nucleus through the following
steps (Figure 27.3):
RNA polymerase
coding strand
Free RNA nucleotides pair
with their complementary
bases on the template strand.
direction of transcription
Figure 27.3 The process of transcription
RNA polymerase RNA
template strand 27- 5
coding strand
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27 Molecular genetics
2. Translation
Link it
Translation leads to the synthesis of a polypeptide, with an amino
Ribosomes are made up of acid sequence determined by the series of codons on the mRNA.
ribosomal RNA (rRNA) and
proteins. They may be found free
The process occurs at ribosomes in the cytoplasm.
in the cytoplasm or bound to the
endoplasmic reticulum (ER) to a. The role of transfer RNA
form rough ER (see Chapter 3).
In addition to mRNA molecules and ribosomes, translation requires
another type of RNA, called transfer RNA (tRNA). tRNA molecules
act as carriers of amino acids, bringing specific amino acids to the
ribosomes.
At one end of the tRNA molecule is a binding site for a specific
amino acid.
Remember this
tRNA is a small single-stranded
molecule twisted into the shape of
a clover leaf. Like mRNA, tRNA is
made in the nucleus through
transcription and then moves out
to the cytoplasm.
anticodon
Figure 27.4 Structure of a tRNA molecule
codon
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anticodon
27 Molecular genetics
b. Synthesizing a polypeptide
first amino acid
start codon
peptide bond
growing polypeptide
The ribosome moves one codon further
along the mRNA. The first tRNA is first tRNA is
released to pick up another amino acid released
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mRNA
stop codon
start
ribosome
codon
x48,000 released
Remember this
The chart below lists all of the 64 possible codons on mRNA. Each
You do not need to memorize the
codons for amino acids. You will codon corresponds to a specific amino acid or a stop signal.
always be given this information in
an exam question.
U C A G Ala = Alanine
Third base
Figure 27.7 The mRNA codons and the corresponding amino acids or signals they specify
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27 Molecular genetics
c. Assembling a protein
The polypeptide produced by translation then coils and folds to
form a protein. Some proteins consist of more than one polypeptide.
The amino acid sequence of each polypeptide determines the
three-dimensional structure (conformation) of the protein
molecule.
polypeptide
Key point
1. The base sequence of DNA in a gene serves as the genetic code that
determines the sequence of amino acids in a protein.
2. Protein synthesis involves two stages:
• Transcription—the genetic code of a gene is copied to an mRNA
molecule in the nucleus.
• Translation—amino acids are assembled into a polypeptide by a
ribosome in the cytoplasm, based on the genetic code carried by the
mRNA.
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27 Molecular genetics
Checkpoint
1. Which of the following descriptions about transcription is correct?
A. tRNA pairs with ribosome to produce amino acids.
B. mRNA pairs with ribosome to produce proteins.
C. Free DNA nucleotides pair with DNA template strand to
produce DNA.
D. Free RNA nucleotides pair with DNA template strand to
produce mRNA.
2. If the base sequence on the coding strand of the DNA is AAC, which
of the following combinations correctly shows the mRNA codon and
the tRNA anticodon?
mRNA codon tRNA anticodon
A. AAC UUG
B. AAC TTG
C. UUG AAC
D. TTG AAC
mutation
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chromosome mutation
27 Molecular genetics
Normal TAC TAG AAA CCG GTA AUG AUC UUU GGC CAU Met Ile Phe Gly His
Insertion TAC TAG AAC ACC GGT A AUG AUC UUG UGG CCA U Met Ile Leu Trp Pro
Deletion TAC TAG AAC CGG TA AUG AUC UUG GCC AU Met Ile Leu Ala
Substitution TAC TAG AAA TCG GTA AUG AUC UUU AGC CAU Met Ile Phe Ser His
Inversion TAC TGA AAA CCG GTA AUG ACU UUU GGC CAU Met Thr Phe Gly His
Table 27.1 Types of gene mutations and their effects on the amino acid sequence
If the new codon codes for the same amino acid, the amino acid
sequence will remain the same. This is called a silent mutation.
mRNA transcribed
mRNA transcribed
normal sickle-shaped
x5000
Figure 27.10 SEM showing normal and sickle-shaped red blood cells
sickle-cell anaemia
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27 Molecular genetics
sickle-shaped cells Sickle-shaped cells do not carry oxygen around the body as
sticking together
efficiently as normal red blood cells. They tend to stick together,
blocking blood vessels (Figure 27.11). This prevents normal blood
flow and can cause organ damage.
(i) Give the sequence of amino acids in the polypeptide coded for by this segment of mRNA.
(1 mark)
(ii) The effects of two different gene mutations on the base sequence of the mRNA are shown
below.
Mutation 1 CGGAUGUACCGC
Mutation 2 CGGAUGUAACGA
Use the information in the table to explain the effect of each mutation on the resulting
polypeptide. (4 marks)
Solution
Reminder
(a) GCCTACATGGCT ................................................................. (1)
The base sequence of the template
(b) (i) Arg – Met – Tyr – Arg ...................................................... (1) strand is complementary to that of
the mRNA molecule.
(ii) Mutation 1 causes no change to the polypeptide ............. (1)
because both the codes before and after the mutation code
Reminder
for the same amino acid (Arg). ...................................... (1)
The genetic code is degenerate, i.e.
Mutation 2 changes a codon for an amino acid to a stop some codons code for the same
codon. ........................................................................... (1) amino acid.
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27 Molecular genetics
2. Chromosome mutations
A chromosome mutation is a change in the structure or number of
chromosomes. Unlike a gene mutation which affects one gene only,
chromosome mutations affect large segments of DNA containing
many genes.
break
break
b Duplication—a segment of a
chromosome is inserted to the
homologous chromosome,
resulting in duplication of genes.
break
break
c Inversion—a segment of a chromosome
breaks off and rotates through 180°
before rejoining. The order of genes is
reversed.
break
d Translocation—a segment of a
chromosome breaks off and becomes
attached to a non-homologous
chromosome. Some genes are
exchanged between the chromosomes.
break
deletion translocation
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inversion
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27 Molecular genetics
diploid cell
Members of a pair (2n)
of homologous
chromosomes fail
to separate Meiosis I
Sister
chromatids
Meiosis II fail to
separate
abnormal abnormal
abnormal gametes with abnormal gametes with normal gametes gamete gamete
an extra chromosome a chromosome missing (n) (n + 1) (n - 1)
(n + 1) (n - 1)
Figure 27.13 Non-disjunction during gamete formation (only a pair of homologous chromosomes is shown)
non-disjunction
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Down syndrome
Down syndrome is caused by non-disjunction of chromosomes 21
during gamete formation in a parent. If a gamete containing an
extra copy of chromosome 21 fuses with a normal gamete during
fertilization, the resulting zygote will have three copies of
chromosome 21 (Figure 27.14). The zygote will develop into an
individual with Down syndrome. There will be an extra copy of
chromosome 21 in each of the body cells (Figure 27.15). This
condition is called trisomy 21.
abnormal ovum
(n + 1)
1 2 3 4 5
fertilization
6 7 8 9 10 11 12
zygyote
13 14 15 16 17 18
(2n + 1)
normal sperm 19 20 21 22 X Y
(n)
Figure 27.14 Formation of a zygote with an extra copy Figure 27.15 Karyotype of a male with Down
of chromosome 21 (only chromosomes 21 are shown) syndrome
Taking it further
Sex chromosome mutations
Chromosome mutations can also occur in sex chromosomes. An abnormal number of sex chromosomes does not
usually affect survival, but can affect sexual development. Below are two examples.
1 2 3 4 5 1 2 3 4 5
6 7 8 9 10 11 12 6 7 8 9 10 11 12
13 14 15 16 17 18 13 14 15 16 17 18
19 20 21 22 x y 19 20 21 22 x y
Karyotype of a female with Turner syndrome Karyotype of a male with Klinefelter syndrome
B. Causes of mutations
Spontaneous mutations are mutations that occur naturally and
randomly with no outside causes. They may arise from errors in
DNA replication. The rate of spontaneous mutations varies among
genes and organisms, but is generally low.
x2500
HPV vaccines reduce the risk of Helicobacter pylori
cervical cancer associated with HPV
infections.
C. Effects of mutations
Mutations can occur in any cells:
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Use sunscreen to reduce the amount Avoiding tobacco can reduce the
of UV radiation reaching the skin. risk of lung cancer.
STSE connections
Uses of induced mutations
Induced mutations may be useful in science and agriculture. Scientists induce
mutations to study how genes normally function or to create new strains of
organisms. For example, mutated strains of Penicillium that can produce a
higher concentration of penicillin have been created. Plant breeders also
induce mutations to create new varieties of crops with improved characteristics.
Rio Red grapefruits (left) and several type of rice (right) have been created by
using radiation to induce mutations.
natural selection
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27 Molecular genetics
Key point
1. A mutation is a sudden and permanent change in the DNA of an
organism.
2. A gene mutation is a change in the base sequence of DNA in a gene.
3. A chromosome mutation is a change in the structure or number of
chromosomes.
4. Exposure to mutagens can increase the rate of mutations.
Checkpoint
The following events may occur in a cell after exposure to radiations.
I. A change in protein conformation
II. A change in amino acid sequence
III. A change in cellular activity
IV. A mutation
What is the correct sequence of the events?
A. III IV II I
B. III II IV I
C. IV II I III
D. IV I II III
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Article reading
Questions
3. Why are some abnormalities observed in the butterfly offspring but not in their parents?
(2 marks)
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e-dictionary
Key terms e-aristo.hk/r/
bioccedict.e
Summary
1. The base sequence of DNA in a gene serves as the genetic code that determines the sequence of amino
acids in a protein. The genetic code has the following features:
• It is a triplet code. Three consecutive bases on a DNA strand code for one amino acid.
• It is a degenerate code. More than one triplet code may code for the same amino acid.
• It is read in a continuous manner.
• It is non-overlapping.
• It is universal. The same triplet code codes for the same amino acid in all species.
Transcription Translation
Base pairing Bases on the DNA template strand pair Codons on mRNA pair with anticodons
with bases on free RNA nucleotides on tRNA
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Mutations
27.2
Insertion One or more bases are added to the Every codon after the point of mutation
sequence. is changed (i.e. there is a frame shift).
The amino acid sequence after the point
Deletion One or more bases are lost from of mutation is also changed. The
the sequence. resulting protein is usually non-
functional.
Substitution One or more bases are replaced by The amino acid sequence may or may
others. not change because more than one
codon can code for the same amino
Inversion A sequence of bases is reversed. acid.
5. Sickle-cell anaemia is caused by a substitution of a base in the gene coding for a polypeptide chain in
haemoglobin.
Translocation A segment of a chromosome breaks Some genes are exchanged between the
off and becomes attached to a two non-homologous chromosomes.
non-homologous chromosome.
7. Down syndrome is a condition in which a person has an extra copy of chromosome 21 in the body cells. It
is caused by non-disjunction of chromosomes 21 during gamete formation in a parent.
8. Spontaneous mutations are mutations that occur naturally and randomly with no outside causes.
10. Mutagens are agents that can increase the rate of mutations. These include certain chemicals and
radiations.
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Concept map
Complete the following concept map to review the key points of this chapter.
affects
Protein synthesis
transcription
induce
Mutation
nucleus polypeptides
in the
coil and fold
cytoplasm to form
gene chromosome
Level 1: Understanding basic concepts (8 marks, 1 mark for each multiple-choice question)
Answer
1. The diagram below shows an overview of protein (a) Identify A to D. (4 marks)
synthesis in a eukaryotic cell.
(b) The following describes the events occurring
during protein synthesis. Arrange them in the
DNA correct order by placing numbers 1 to 6 in the
boxes provided. (1 mark)
The mRNA molecule binds to a ribosome.
nucleus cytoplasm The DNA double helix unwinds.
C Free nucleotides bind with complementary
bases of the template strand to form an
A mRNA molecule.
tRNA molecules carrying specific amino
amino acids bind to the mRNA molecule.
acid
B The mRNA molecule leaves the nucleus
and enters the cytoplasm.
A peptide bond is formed between
D adjacent amino acids.
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27 Molecular genetics
2. The tRNA anticodon for the sequence CAT on the 4. A person with Down syndrome has 47 instead of
coding strand of DNA is 46 chromosomes in each body cell. What is the
cause of this?
A. CAT. B. GUA.
A. Random alignment of chromosomes in the
C. CAU. D. GTA.
formation of gametes
3. What base sequence could be formed by the B. Gene mutation in the formation of gametes
deletion and substitution of bases from the
sequence GGACTCCTC? C. Non-disjunction in the formation of gametes
D. Fertilization of an ovum by two sperms
Deletion of a triplet Substitution of a base
A. GGACTCC GGACUCUCC
B. GGACTC GGTCTCCTC
C. GACTCCC GCGATCCTC
D. CTCCTC GGACTCCTCC
5. (a) Complete the table below concerning three types of nucleic acid. (4 marks)
Nucleic acid
DNA mRNA
Feature
Molecular size 50–250 million base pairs 75–3000 nucleotides 70–80 nucleotides
Nitrogenous bases A, G, C, U A, G, C, U
Answer
(b) Explain the difference in length between DNA and mRNA molecules. (2 marks)
Answer
6. (a) Describe how cells use the information in a gene to make a protein. (6 marks)
sugar molecule
With reference to the diagram, suggest why the defective CFTR protein, with one amino acid missing, is
Answer
not functional. (2 marks)
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27 Molecular genetics
7. Read the following question and student A’s answer. Re-write and improve the answer based on the teacher’s
comment.
Question
Explain, in terms of protein synthesis, why some mutations are harmful while others are harmless. (4 marks) Answer
Teacher's comment
Although the student has the right idea about the effect of mutation on protein structure, there is no reference
to codons. The answer makes no mention of the different effects of addition or deletion of bases. Only two
marks are awarded here.
Answers are available on p. A2. If you miss any of the questions, review the relevant section(s) again.
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Exam practice
Multiple-choice questions
Section 27.1 Section 27.2
1. What substances are involved in the process of 4. A DNA mutation is shown below.
transcription?
AAGCGCAAT
A. DNA and mRNA
B. DNA and ribosome
AAGCCGAAT
C. mRNA and tRNA
D. mRNA, tRNA and ribosome This type of mutation is called
A. a deletion.
2. Which of the following statements about codons is B. an insertion.
correct?
C. a substitution.
A. A codon may consist of bases A, C, G or T.
D. an inversion.
B. A codon is a triplet of bases on transfer RNA.
C. Most amino acids are coded by more than one 5. One type of gene mutation involves a base
codon. substitution.
D. All codons code for amino acids.
Original DNA sequence:
HKDSEE Biology 2013 Paper 1 Section A Q11 GAC TGA GGA CTT CTC TTC AGA
Mutated sequence 1:
3. The following table shows six codons and the GAC TGA GGA CAT CTC TTC AGA
corresponding amino acids translated from these
codons: Mutated sequence 2:
GAC TGA GGA CTC CTC TTC AGA
mRNA codon AAG CUA CCU
mRNA codons for valine GUU GUC GUA GUG
amino acid lysine leucine proline
mRNA codons for glutamic acid GAA GAG
Which of the following is the correct sequence of C. All three DNA sequences would translate into
the nucleotides on the non-template DNA (coding the same polypeptide.
DNA) for this part of the polypeptide? D. Only the original DNA and sequence 2 would
translate into the same polypeptide.
A. AAGCCTCATGAT
B. TTCGGAGTACTA IBDP Higher Level Biology Paper 1 (TZ2)
May 2013 Q11
C. AAGCCUCAUGAU
D. UUCGGAGUACUA
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27 Molecular genetics
6. What is the cause of sickle-cell anaemia? 8. Males affected by Klinefelter syndrome may have
two X chromosomes and a Y chromosome (XXY).
A. A base in the haemoglobin gene is substituted. This condition arises from
B. Errors occur in the translation of mRNA.
A. independent assortment.
C. Valine is replaced by glutamic acid in the
B. sex-linkage.
polypeptide chain of haemoglobin.
C. crossing over.
D. Homologous chromosomes fail to separate
during meiosis. D. non-disjunction.
7. During pregnancy, amniotic fluid containing foetal 9. Some fruit flies are subjected to radiation in a
cells can be obtained for karyotyping. This helps to laboratory and are allowed to reproduce. The
determine whether the foetus offspring produced show new characteristics, such
as white eyes. This is caused by
(1) is male or female.
A. continuous variation.
(2) has Down syndrome or not.
B. discontinuous variation.
(3) is a carrier of Sickle-cell anaemia.
C. spontaneous mutation.
A. (1) and (2) only
D. induced mutation.
B. (1) and (3) only
C. (2) and (3) only
D. (1), (2) and (3)
Short questions
Section 27.1
Answer
10. Give four ways in which transcription differs from translation. (4 marks)
A method called in vitro translation is often used by scientists to produce proteins in the laboratory. The method
uses extracts from animal cells, plant cells or bacteria. These are chosen because they have high levels of protein
synthesis. The cells are treated so that the cell walls, if present, and cell membranes are broken down and then
treated so that any of the cell’s own DNA and mRNA are destroyed. When mRNA from any source is added to these
extracts, it will be translated into the corresponding protein.
Cambridge International AS & A Level Biology 9700 Paper 23 Q2(a),(c) June 2013
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27 Molecular genetics
Section 27.2
12. The table below shows the sequence of bases on a segment of a DNA strand and the effects of four different gene
mutations.
Answer
(a) (i) Identify gene mutations 1 and 2. (2 marks)
(ii) Mutations 3 and 4 would probably cause the greatest changes in the structure of the protein coded for by
Answer
the original DNA strand. Explain why. (2 marks)
Answer
(b) Certain chemicals can induce mutations. Give one example of such a chemical. (1 mark)
13. Table 1 gives the mRNA codons for six different amino acids.
Table 1
Table 2
DNA bases C C A C G T A A G T G G C C G
mRNA bases
Amino acids
(a) (i) Complete Table 2 to show the sequence of bases in the mRNA transcribed from this section of DNA.
(1 mark)
(ii) Use information from Table 1 to complete the sequence of amino acids coded for by this section of DNA in
Table 2. (1 mark)
(b) (i) A substitution mutation occurred in this section of DNA. The base T, in the grey box, was replaced by the
Answer
base C. Explain why this had no effect on the sequence of amino acids. (2 marks)
(ii) A deletion mutation occurred in which the base T, in the grey box, was lost from the DNA. What effect
Answer
would this deletion have on the sequence of amino acids? (1 mark)
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27 Molecular genetics
14. In humans, three copies of chromosome number 21 result in the medical condition Down syndrome. The condition
arises when a chromosome mutation causes two copies of chromosome number 21 to occur in an egg. When this
egg is fertilized with a normal sperm, a zygote is produced with the 47 chromosomes characteristic of Down
syndrome.
Answer
(a) Name the type of chromosome mutation involved in Down syndrome. (1 mark)
(b) There is a close positive correlation between the incidence of Down syndrome and the age of the mother at the
time of birth. The graph below shows the relationship between the age of the mother and the risk of having a
baby with Down syndrome.
3.5
3.0
2.5
2.0
Risk of Down syndrome
in live births (%) 1.5
1.0
0.5
0
20 25 30 35 40 45
Maternal age (years)
Structured questions
Section 27.1
15. The electron micrograph on the next page shows some structures of a human cell.
12
27 (a) Label A and B. (2 marks)
(b) Which stage of the cell cycle is shown in this photomicrograph? Give a reason to support your answer.
(2 marks)
(c) The cell was obtained from the pancreas. How do A and B work together such that this cell can perfrom its
function? (4 marks)
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27 Molecular genetics
16. The hormone insulin is a relatively small protein. Researchers studying the production of insulin in the cells of the
pancreas noted that one of the early steps in this process was the formation of a polypeptide called preproinsulin.
Researchers noted that the formation of this polypeptide required repeated use of different types of molecule X,
shown below.
molecule X
anticodon
Answer
(a) (i) What is the name of molecule X? (1 mark)
Answer
(ii) How does molecule X play a role in the production of preproinsulin? (3 marks)
(b) The coding information in the DNA molecule for preproinsulin is initially transferred to another molecule
(molecule W). However, molecule W has a different nucleotide sequence from the coding section of the DNA
molecule.
Describe how molecule W is synthesized. (3 marks)Answer
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27 Molecular genetics
Section 27.2
17. In 2014, parts of West Africa were hit by an epidemic of Ebola Fever. Most people who caught the disease died.
The diagram below shows the virus which causes the disease.
RNA
secreted
glycoprotein
capsule
glycoprotein
(a) (i) This virus reproduces in the cytoplasm of the host cell. Using information from the diagram, suggest why
Answer
this virus does not have to enter the nucleus of cells in order to produce proteins. (2 marks)
(ii) Suggest the organelle in the infected cell which would complete the production of glycoprotein. (1 mark)Answer
(iii) Describe the process by which the genetic information of the virus would be translated into amino acid
Answer
sequences in its proteins. (4 marks)
(b) When Ebola viruses enter human cells one of their genes controls the production of a glycoprotein that is
immediately released.
The gene which codes for this glycoprotein is changed after infecting cells. An extra adenine is inserted at
position 1016.
The changed gene then controls the production of the second glycoprotein which forms part of the viral capsule.
Diagrams of the changed and original base sequences for the glycoproteins are shown below.
1015
1020
1025
1015
1020
1025
(i) Use the table on the next page to complete the changed amino acid sequence in the diagram above.
(1 mark)
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27 Molecular genetics
Second
U C A G
Phe Ser Tyr Cys U
Phe Ser Tyr Cys C
U
Leu Ser STOP STOP A
Leu Ser STOP Trp G
Leu Pro His Arg U
Leu Pro His Arg C
C
Leu Pro Gln Arg A
Leu Pro Gln Arg G
Third
First
WJEC GCE A Level Biology/Human Biology Module BY5 Jun 2016 Q4(a)–(b)
Answer
18. (a) (i) Explain the term chromosome mutation. (2 marks)
(ii) Chromosome mutations usually have much more serious consequences than single gene mutations.
Answer
Explain why. (1 mark)
(b) Turner syndrome is the most common chromosome mutation in females.
(i) A female affected by Turner syndrome may have an entire X chromosome missing. Explain how this
Answer
condition can arise. (3 marks)
In some forms of Turner syndrome, one of the pair of X chromosomes is damaged so that part of its structure is
missing. The diagram below shows a normal X chromosome and two forms of mutation in the X chromosome.
Normal X chromosome Mutation 1 Mutation 2
This section of X
chromosome is
missing; the affected
female may have a
short stature
This section of X
chromosome is missing;
the affected female may
have poor development
of the ovaries
Answer
(ii) Identify the type of these two mutations of the X chromosome. (1 mark)
Answer
(iii) Explain why mutations 1 and 2 result in different phenotypes. (2 marks)
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Essays
Section 27.1
19. DNA is found in the nucleus but RNA is found in both the nucleus and cytoplasm. Account for this observation by
explaining the functions of the different types of nucleic acids found in cells. (10 marks)Answer
WJEC GCE A level Biology/Human Biology Module BY5 Jun 2015 Q7(a)
Section 27.2
Answer
20. Give an account of gene mutations and their effects on an organism. (10 marks)
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