Matrix in cell growth
• Matrix is an insoluble, dynamic gel in the
  cytoplasm, believed to be involved in cell
  shape     determination    and     locomotive
  mechanism, across a solid substrate. It
  consists of polymeric microtubules, actin
  microfilaments and intermediate filaments
  interacting with a number of other proteins.
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      Extracellular matrix (ECM)
Part of three connective tissue layers
(endomysium, perimysium, and epimysium)
surrounding muscle fibres.
Extracellular matrix is composed of proteins
including collagens and proteoglycans.
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Component of extra cellular matrix
 ECM is comprised variously of collagen, laminin,
fibronectin, hyaluronan and proteoglycans such
as beta glycan, decorin, perlecan, and syndecan-
1, some of which bind to growth factors or
cytokines.
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Component of extra cellular matrix
• Proteoglycans in extracellular matrix form a cross-linked meshwork with fibrous
proteins
• Some proteins bind multiple other proteins and glycosaminoglycans (fibronectin).
• Integrin is a family of proteins that mediate signalling between cell interior and
extracellular matrix.
• Mass of interactions between cells and matrix not only anchors cells to matrix but
also provides paths that direct migration of cells in developing tissue and (through
integrin) conveys information in both directions across plasma membrane.
ECMs are composed of proteins such as collagen and elastin that serve as scaffolds for
cells as well as networks of various adhesion ligands and growth factors, which
promote cell signalling. ECM is complex in both structure and composition.
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                          Role of matrix
Some important roles that matrix play in biological system which is described as
follows.
• Matrixes are generally used for providing support
• It involve in segregating tissues from one another
• It takes part in regulation of intercellular communication
• Extracellular Matrix cells have been found to cause regrowth and healing of tissue.
• Some time it acts as fibrosis
• The use of ECM constituents can be highly beneficial in enhancing cell survival,
proliferation, or differentiation, but unless recombinant molecules are used
• In human foetuses, the extracellular matrix works with stem cells to grow and
regrow all parts of the human body and foetus can regrow anything that gets
damaged in the womb
• In case of injury repair and tissue engineering, the extracellular matrix serves two
main functions a) It prevents the immune system by triggering from the injury and
responding with inflammation and scar tissue b) It facilitates the surrounding cells to
repair the tissue instead of forming scar tissue
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        Molecular components
• Components of the ECM are produced
  intracellularly by resident cells and secreted
  into the ECM through exocytosis.
• Once secreted, they then aggregate with the
  existing matrix. The ECM is composed of an
  interlocking mesh of fibrous proteins and
  glycosaminoglycans (GAGs).
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                 Proteoglycans
• Glycosaminoglycan (GAGs) are carbohydrate polymers
  and are usually attached to extracellular matrix
  proteins to form proteoglycans (exception-hyaluronic
  acid).
• Proteoglycans have a net negative charge that attracts
  positively charged sodium ions (Na+) which attracts
  water molecules via osmosis, keeping the ECM and
  resident cells hydrated.
• Proteoglycans may also help to trap and store growth
  factors within the ECM.
• There are the different types of proteoglycan found
  within the extracellular matrix.
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              1. Heparin sulphate
• Heparin sulphate (HS) is a linear polysaccharide found in all
  animal tissues. It occurs as a proteoglycan (PG) in which
  two or three HS chains are attached in close proximity to
  cell surface or extracellular matrix proteins.
• HS binds to a variety of protein ligands and involve in
  regulation of a wide variety of biological activities, including
  developmental processes, angiogenesis, blood coagulation
  and tumour metastasis.
• In the extracellular matrix, particularly basement
  membranes, the multi-domain proteins perlecan, agrin and
  collagen XVIII are the main proteins to which heparin
  sulphate is attached.
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       2. Chondroitin sulphate
• Chondroitin sulfates help to provide the
  tensile strength of cartilage, tendons,
  ligaments and walls of the aorta.
• They have also been known to affect
  neuroplasticity.
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          3. Keratan sulphate
• Keratan sulfates have variable sulfate content
  and unlike many other GAGs, do not contain
  uronic acid. They are present in the cornea,
  cartilage, bones and the horns of animals.
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 Non-proteoglycan polysaccharide
There are various non-proteoglycan polysaccharides.
1. Hyaluronic acid: Hyaluronic acid (or hyaluronan at physiological
    pH) is a polysaccharide containing alternating residues of D-
    glucuronic acid and N-acetyl glucosamine. Unlike other
    glycosaminoglycan (GAGs) it is not found as a proteoglycan.
2. Like cellulose and chitin, it is synthesized at the plasma membrane
    by a transmembrane hyaluronan synthase.
3. Hyaluronan is the only GAG that occurs as a single long
    polysaccharide chain.
4. Hyaluronate is also an essential component of the extracellular
    matrix of cartilage and tendons, to which it contributes tensile
    strength and elasticity as a result of its strong interactions with
    other components of the matrix. A number of proteoglycans
    interact with hyaluronan to form large complexes in the
    extracellular
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• matrix. A well-characterized example is
  aggrecan, the major proteoglycan of cartilage.
  Hyaluronic acid acts as an environmental sign
  that regulates cell behaviour during
  embryonic development, healing processes,
  inflammation and tumour development. It
  interacts with a specific trans-membrane
  receptor, CD44.
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    2. Matrix Structural Proteins
• Extracellular matrices are composed of tough
  fibrous proteins embedded in a gel-like
  polysaccharide ground substance-a design
  basically similar to that of plant cell walls.
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                            Collagen
• In ECM of most animals, collagens are the abundantly found
  structural protein. In fact, collagen is the most abundant protein in
  the human body and accounts for 90% of bone matrix protein
  content.
• Collagens are present in the ECM as fibrillar proteins and give
  structural support to resident cells.
• Collagens are a large family of proteins containing at least 27
  different members. They are characterized by the formation of triple
  helices in which three polypeptide chains are wound tightly around
  one another in a rope-like structure.
• The different collagen polypeptides can assemble into 42 different
  trimers. The triple helix domains of the collagens consist of repeats of
  the amino acid sequence Gly-X-Y. A glycine (the smallest amino acid,
  with a side chain consisting only of hydrogen) is required in every
  third position, so that the polypeptide chains can pack together close
  enough to form the collagen triple helix.                             15
                          Collagen
• Proline is frequently found in the X position and hydroxyproline in
  the γ position; because of their ring structure these amino acids
  stabilize the helical conformations of the polypeptide chains.
• The unusual amino acid hydroxyproline is formed within the
  endoplasmic reticulum by modification of proline residues that
  have already been incorporated into collagen polypeptide chains.
• Lysine residues in collagen are also frequently converted to
  hydroxylysines. The hydroxyl groups of these modified amino acids
  are thought to stabilize the collagen triple helix by forming
  hydrogen bonds between polypeptide chains.
• These amino acids are rarely found in other proteins although
  hydroxyproline is also common in some of the glycoproteins of
  plant cell walls.
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The collagen can be divided into several families
 according to the types of structure they form:
•   Fibril- forming
•   Fibril-associated
•   Network forming
•   Anchoring fibrils
•   Transmembrane
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             collagen and families
• The most abundant type of collagen (type I collagen) is one
  of the fibril forming collagens--the basic structural
  components of connective tissues.
• The polypeptide chains of these collagens consist of
  approximately a thousand amino acids or 330 Gly-XY
  repeats. After being secreted from the cell these collagens
  assemble into collagen fibrils in which the triple helical
  molecules are associated in regular staggered arrays.
• These fibrils do not form within the cell because the fibril
  forming collagens are synthesized as soluble precursors
  (procollagens) that contain nonhelical segments at both
  ends of the polypeptide chain. Procollagen is cleaved to
  collagen after its secretion, so the assembly of collagen into
  fibrils take place only outside the cell.
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          collagen and families
• The association of collagen molecules in fibrils
  is further strengthened by the formation of
  covalent crosslinks between the side chains of
  lysine and hydroxylysine residues.
• Frequently, the fibrils further associate with
  one another to form collagen fibers, which can
  be several micrometers in diameter.
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                            Elastin
• In contrast to collagens, Elastins give elasticity to tissues,
  allowing them to stretch when needed and then return to
  their original state. This is useful in blood vessels, the lungs, in
  skin, and the ligaments.
• Elastins are synthesized by fibroblasts and smooth muscle
  cells.
• Elastins are highly insoluble, and tropoelastins are secreted
  inside a chaperone molecule, which releases the precursor
  molecule upon contact with a fiber of mature elastin.
  Tropoelastins are then deaminated to become incorporated
  into the elastin strand.
• Diseases such as cutis laxa and Williams syndrome are
  associated with deficient or absence of elastin fibers in the
  ECM.                                                               20
      Matrix adhesion proteins:
• Matrix adhesion proteins, the final class of
  extracellular    matrix     constituents  are
  responsible for linking the components of the
  matrix to one another and to the surfaces of
  cells.
• They interact with collagen and proteoglycans
  to specify matrix organization and are the
  major binding sites for integrins.
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                         1. Fibronectin
• Fibronectin is the principal adhesion protein of connective tissues.
  Fibronectin is a dimeric glycoprotein consisting of two polypeptide chains,
  each containing nearly 2500 amino acids.
• Fibronectin are proteins that connect cells with collagen fibers in the ECM,
  allowing cells to move through the ECM.
• Within the extracellular matrix, fibronectin is often cross-linked into fibrils.
  Fibronectin has binding sites for both collagen and GAGs so it cross-links
  these matrix components.
• Fibronectins bind collagen and cell surface integrins, causing a
  reorganization of the cell's cytoskeleton and facilitating cell movement.
• Fibronectin are secreted by cells in an unfolded, inactive form. Binding to
  integrins unfolds fibronectin molecules, allowing them to form dimers so
  that they can function properly. Fibronectins also help at the site of tissue
  injury by binding to platelets during blood clotting and facilitating cell
  movement to the affected areas during wound healing.
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                            2. Laminin
•    In almost all animals, Basal laminae contain distinct adhesion proteins of
    the laminin family.
•   Laminins are heterotrimers of α, β and γ subunits which are the products
    of five α genes, four β genes, and three γ genes.
•    Like type IV collagen, laminins can self-assemble into meshlike polymers.
    Such laminin networks are the major structural components of the basal
    laminae synthesized in very early embryos, which do not contain collagen.
•   The laminins also have binding sites for cell surface receptors such as
    integrins, type IV collagen, and the heparan sulfate proteoglycan,
    perlecan.
•   In addition, laminins are tightly associated with another adhesion protein,
    called entactin, which also binds to type IV collagen. As a result of these
    multiple interactions, laminin, entactin, type IV collagen, and perlecan
    form cross-linked networks in the basal lamina. They also support in cell
    adhesion.
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        Cell adhesion to the ECM
• Many cells bind to components of the extracellular matrix.
• Cell adhesion can occur in two ways by focal adhesions,
  connecting the ECM to actin filaments of the cell, and
  hemi-desmosomes, connecting the ECM to intermediate
  filaments such as keratin.
• This cell-to-ECM adhesion is regulated by specific cell
  surface cellular adhesion molecules (CAM) known as
  integrins.
• The integrins are a family of transmembrane proteins
  consisting of two subunits, designated α and β. Integrins
  are cell surface proteins that bind cells to ECM structures
  such as fibronectin and laminin, and also to integrin
  proteins on the surface of other cells.
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       Cell adhesion to the ECM
• Fibronectins bind to ECM macromolecules and
  facilitate their binding to transmembrane
  integrins.
• The attachment of fibronectin to the
  extracellular domain initiates intracellular
  signaling pathways as well as association with
  the cellular cytoskeleton via a set of adaptor
  molecules such as actin.
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               Interesting facts:
• 1. Collagens are abundantly found structural protein in
  the human body and accounts for 90% of bone matrix
  protein content.
• 2. Elastins give elasticity to tissues, allowing them to
  stretch when needed and then return to their original
  state.
• 3. Fibronectins bind to ECM macromolecules and
  facilitate their binding to transmembrane integrins.
• 4. Basal laminae contain distinct adhesion proteins of
  the laminin family in almost all animals.
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                  Questions
1. Explain the role of matrix in cell culture?
2. Give the detail about matrix material that are
generally used?
3. What is the difference between proteoglycan
and non-proteoglycan polysaccharide and how
can they involve in formation of matrix?
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