Corals
-   Corals are a subset of cnidaria
  -   Sessile reef fauna
         o Sponges
         o Hard corals and soft corals
  -   Ecologically important
         o Only inhabiting 0.2% of ocean floor but 1/3-1/4 of all marine
            species
         o Most species-rich marine community
         o • 800 coral spp.
         o • At least 4,000 fish spp.
         o • 168,000 invert spp.
         o • Estimated 1 -10 million spp.
         o • Less diverse in species than rainforests,
         o but considerably richer in phyla
         o • 30 of 34 animal phyla & all algal
         o Divisions
  -   Scleractinia
         o Robust and Complex clades The robust coral clade branches
            off from within the complex corals
Robust and complex clades
  -   Calcification:
         o Complex corals are nominally less calcified/lower calcification
             density than robust corals.
  -   Mitochondrial genome composition:
         o Robust corals have a lower (G + C) content in their
             mitochondrial genomes than complex corals.
  -   Embryogenetic morphological characteristics:
         o Robust coral embryos pass through two periods of
             invagination, separated by a return to a spherical shape.
             Complex clade corals have no or little blastocoel, the robust
             clade corals have an apparent blastocoel
  -   Stress-response:
         o Robust corals have uneven expansions in genes associated
             with innate immunity and stress response; Robust corals have
             a unique histidine biosynthesis pathway that is absent from
             complex corals. This pathway affects coral nutrition and
             symbiosis. Robust corals have more HSP20 loci than more
             stress-sensitive corals
The coral holobiont
  -   coral polyps, made of a stomach, mouth and tentacles
  -   tissue joining colony
  -   each polyp lays down its corralite structures, caco3 structure
The coral microbiome
  -   includes symbionts, bacteria, viruses, fungi and other
      microorganisms
  -   The host coral and its microbiome together make up the coral
      holobiont, with these microorganisms existing throughout different
      tissues of the coral animal
  -   Each of these microbial groups impacts the coral in various ways
      that influence the health of the coral and aid in resistance to disease
      and environmental stress.
  -    Bacteria play a pivotal role in the coral microbiome and coral health
      – in acquisition and cycling of nutrients, and microbes in the surface
      mucus of corals act as a first line of defense against pathogens
Coral – Zooxanthellae symbiotic relationship
  -   The coral provides the algae with a protected environment and
      compounds they need for photosynthesis.
  -   The algae produce oxygen and help the coral to remove wastes.
  -   Most importantly they supply the coral with glucose, glycerol, and
      amino acids - the products of photosynthesis. The coral uses these
      products to make proteins, fats, and carbohydrates, and produce
      calcium carbonate
  -   The relationship facilitates a tight recycling of nutrients in nutrient-
      poor tropical waters. ~ 90% of the organic material
      photosynthetically produced by the zooxanthellae is transferred to
      the host coral tissue
Single celled algae – zooxanthenellae
  -   Zooxanthellae are adapted dinoflagellates, in the genus
      Symbiodinium
  -   Many different clades (A-H) and > 200 sub-clades
  -   Give coral their colour
  -   Different clades have different thermal tolerances
Thermal tolerances of zooxanthellae
  -   Identify and diversity of zooxanthellae from 3 Palauan reefs exposed
      to different temperature ranges
  -   Higher temperature more clade D and less diversity in symbionts
Light enhanced calcification
  -   Coral needs carbonate ions, byproduct of respiration
  -   Significant positive relationship between calcification rate and light
      intensity
Coral growth
  -   The skeletons of stony corals are secreted by the lower portion of
      the polyp. The floor of the coralite is called the basal plate.
      Periodically, a polyp will lift off its base and secrete a new basal
      plate above the old one, creating partition in the skeleton. With
      Growth rate of Monastrea faveolata, Tobago each added partition,
      the polyp is elevated and colonial coral structure grows.
  -   Massive corals growth more slowly (few mm per year), branching
      corals more quickly (>15 cms per year) – consider surface area to
      volume ratio, competition for space.
  -   Many different measures: Linear extension (calcification), biomass,
      density, volume
  -   Many different techniques: direct measurement, photography,
      SHALLOW DEEP x-ray and banding (seasonal density differences),
      radioactive isotopes
  -   Banding (analogous to tree growth rings) occurs because density of
      skeleton depends on rates of deposition which are temperature and
      light dependent
  -   Therefore seasonal variations in growth rate, especially in shallow
      water
Coral morphology
  -   Wide variety of morphologies
Autotrophic and heterotrophic
  -   Heterotrophic corals ingest organisms ranging from bacteria to
      zooplankton
  -   Heterotrophy accounts for between 0 and 66% of the fixed carbon
      incorporated into coral skeletons and can meet from 15 to 35% of
      daily metabolic requirements in healthy corals
  -    Feeding important for some nutrient acquirement e.g. nitrogen,
      phosphorus
  -   Goniastra retiformis, long tentacles for heterotrophic feeding
  -   Porites cylindrica, much smaller tentacles and polyps
Changes in tissue biomass under light/shade and low/high suspended
particulate matter (SPM)
Reproduction, dispersal and connectivity
   -   Asexual reproduction
         o called ‘budding’
         o Cannot start new colonies, only help colonies grow
         o Fragmentation
   -   Sexual reproduction
         o Hermaphroditic or gonochoristic
         o Self- or cross-fertilization
         o Brooders or broadcast spawners
How do coral larvae know where to settle?
   -   Bacteria and their chemical “scents” play critical roles by producing
       chemical cues that tell corals where to settle
   -   The bacteria produce a specific chemical called tetrabromopyrole
       (TBP) that the larvae can detect as they swim near
   -   Once they reach a crustose coralline alga covered with the right
       bacteria, they settle there
Dispersal of coral larvae
   -   Broadcasters, lasted longer in the water column (2 weeks) than the
       brooders
Global Connectivity & Dispersal
   -   50% of broadcast larvae settle within 50–100 km BARRIERS TO
       LARVAL DISPERSAL
   -   Rarer dispersal between regions linking entire oceans in a ‘stepping
       stone’ fashion.
   -   Central Pacific was an almost complete barrier to dispersal, only
       rarely breached westward from the Galapagos. Areas showing
       strong isolation also included Hawaii, Easter Island, the Red Sea and
       the eastern Atlantic.
   -   The Indo-West Pacific and Great Barrier Reef showed the highest
       levels of connectivity, with secondary peaks in the western Indian
       Ocean.
   -   The central Indo-Pacific diversity hotspot was overall a greater
       source than sink for dispersal
Ocean currents vs pelagic larvae duration
   -
Threats, Resilience & Management
  -   Worth tens of billions in ecosystem services
  -   Synergies of human threats
         o Such as dynamite fishing
         o Starfish killer, due to nutrients from pollution
         o Plastic pollution
  -   Coral bleaching – coral gets stressed, zooxanthellae gets expelled or
      eaten
         o The fish leave the reefs
         o They can recover depending on duration
         o Phase shift, algae dominated state
  -   Coral life strategies
         o Four life-history strategies that appear globally consistent
            across 143 species of reef corals: competitive, weedy, stress
            tolerant and generalist taxa.
                 Competitive: grow quickly, broadcast spawners,
                    branching, however susceptible to bleaching, die quickly
                    but grow back quickly
                 Stress tolerant: more tolerant in sea surface temp
                    changes, higher lipid content, can survive longer without
                    bacteria, domed morphology, slower growth
         o Most important traits: colony morphology, growth rate, and
            reproductive mode.
  -   Global Mass Coral Bleaching Events
         o 4 global mass coral bleaching events to date: 1998, 2005,
            2014 17, 2023-current.
         o The great majority of coral reefs (>80%) are expected to
            experience Annual Severe Bleaching (ASB) this century even if
            global temperature rises remain under 2°C
       o Reef areas projected to experience ASB much later than other
          reef areas could be temporary refugia that have lower climate
          vulnerability
-   Factors influencing recovery
       o Loss of > 90% of corals due to bleaching in 1998
       o Around 50% of the reefs recovered and 40% of the reefs
          experienced regime shifts to macro-algae dominated
          compositions.
       o Assessment of factors influencing the probability of recovery,
          identified five major factors:
               density of juvenile corals
               initial structural complexity
               water depth, deeper the water the less warm it wil be
               biomass of herbivorous fishes, fish eat the algae?
               nutrient conditions on the reef. More nutrients = more
                 algae growth, which outcompetes coral
       o Resilience was seen most in coral reef systems that were
          structurally complex and in deeper water
       o Resilience is the ability of a system to absorb or recover from
          disturbance and change, while maintaining its functions and
          services.
-   Coral reef management strategies
-   Reducing local stressors:
       o Marine protected areas:
               Large no-take MPAs
               Locally management MPAs
       o Sustainable fisheries management
       o Reducing land based impacts
       o Restoration techniques
       o Assisted - evolution (genetic engineering techniques)
       o Integrated approaches