Bio Fertilizer
Bio Fertilizer
Bamboriya
BIOFERTILIZERS
d. Endophytic : Gluconacetobacter
Burkholdria
II. PHOSPHORUS SOLUBILIZERS
IMPORTANCE OF BIOFERTILIZERS
Biofertilizers are known to make a number of positive contributions in agriculture.
Supplement fertilizer supplies for meeting the nutrient needs of crops.
Replace 25-30% chemical fertilizers.
Add 20 – 200 kg N/ha (by fixation) under optimum conditions and solubilize/mobilize
30-50 kg P2O5/ha.
They liberate growth promoting substances and vitamins and help to maintain soil
fertility.
They suppress the incidence of pathogens and control diseases.
Increase the crop yield by 10-40%. N2 fixers reduce depletion of soil nutrients and
provide sustainability to the farming system.
They improve soil physical properties, tilth and soil health.
Biofetilizers are eco-friendly, non-pollutants and cost effective.
DISADVANTAGES OF BIOFERTILIZERS
Biofertilizers require special care for long-term storage because they are alive.
Must be used before their expiry date.
If other microorganisms contaminate the carrier medium or if growers use the wrong
strain, they are not as effective.
Biofertilizers lose their effectiveness if the soil is too hot or dry.
1. Family : Rhizobiaceae
2. Genus : Azorhizobium- for stem nodulation (Sesbania rostrata)
Morphology
1. Unicellular, cell size less than 2µ wide, short to medium rod, pleomorphic.
2. Motile with Peritrichous flagella
3. Gram negative
4. Accumulate PHB granules.
Physiology
1. Nature : Chemoheterotrophic, symbiotic with legume
2. C source : Supplied by legume through photosynthates,
monosaccharides, disaccharide
3. N source : Fixed atmospheric N2
4. Respiration : Aerobic
5. Growth : Fast (Rhizobium), slow (Bradyrhizobium)
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Rhizobia are soil bacteria, live freely in soil and in the root region of both leguminous
and non-leguminous plants. However they enter into symbiosis only with leguminous plants,
by infesting their roots and forming nodules on them. Non legume nodulated by Rhizobia is
Trema or Parasponia sp.
The nodulated legumes contribute a good deal to the amount of N 2 fixed in the
biosphere, (50-300 kg N/ha) varied with crops.
Clover - 130 kg N/ha
Cowpea - 62 – 128 kg N/ha
Beijerinck first isolated and cultivate a microorganism from the roots of legumes in
1888 and he named this as Bacillus radicola and latter modified as Rhizobium. The name
Rhizobium was established by Frank in 1889.
Legume plants fix and utilise this N by working symbiotically with Rhizobium in nodules
on their roots. The host plants provide a home for bacteria and energy to fix atmospheric N2
and in turn the plant receives fixed N2 (as protein).
Azorhizobium
These genera can produce stem nodules. Stem nodulation has been reported in 3
genera of legumes: Aeschynomene, Neptunia and Sesbania.
Stem nodulating Rhizobium comprises both fast and slow growing types having the
generation time of 3-4 hr and 10 hrs respectively. Those nodulate Aeschynone can cross
inoculate with S. rostrata strains Azorhizobium caulinodans.
- Fix N2 in free living conditions without differentiating into bacteroids.
- Have O2 protection mechanisms, to fix N2 under free living conditions.
- Mode of entry is through lateral root cracks. No infection thread is formed during
colonization.
- Form both stem and root nodules in S. rostrata.
- Gram negative, motile rods.
- Produces root nodules in rice, wheat.
2. AZOTOBACTER
It is a free living N2 fixer, the cells are not prevent on the rhizoplane, but are
abundant in the rhizosphere region. It is classified under the family Azotobacteriaceae. It
requires more of organic matter and depend on the energy derived from the degradation of
plant residues. Beijerinck (1901) was the first to isolate and describe Azotobacter.
Species
Cell size, flagellation, pigmentation and production of extracellular slime are
considered as diagnostic features of these bacteria in distinguishing species.
Azotobacter cells are polymorphic, gram negative, form cyst and accumulate Poly
Beta hydroxy butyric acid and produces abundant gum.
Among these species A. chrococcum and A. beijrinekii are most commonly occurring species
in India. However, A.chrococcum found in acid soils while A. beijrinekii found in neutral to alkali
soils.
Morphology
Cell size : Large ovoid cells, size 2.0 – 7.0 x 1.0 – 2.5 µ
Cell character : Polymorphic
Gram character : Negative
Physiology
Benefits
Ability to fix atmospheric N2 – 20-40 mg BNF/g of C source in laboratory equivalent to
20-40 kg N/ha.
Production of growth promoting substances like vitamin B, Indole acetic acid, GA.
Ability to produce thiamine, riboflavin, pyridoxin, cyanogobalanine, nicotinic acid,
pantothenic acid, etc.
Biological control of plant diseases by suppressing Aspergillus, Fusarium.
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• The results from larger number of experiments conducted in last four decades have
shown positive response to Azotobacter application on a crop like cereals, millets,
vegetables, cotton and sugarcane and increased the crop yield by 10 to 30%.
- Recommended for Rice, wheat, millets, cereals, cotton, vegetables, sunflower, mustard
and flowers.
3. AZOSPIRILLUM
Azospirillum was first isolated by Beijerinck (1922) in Brazil from the roots of Paspalum
and named it as Azotobacter paspali and later named as Spirillum lipoferum. Dobereiner and
Day (1976) reported the nitrogen fixing potential of some forage grasses due to the activity
of S. lipoferum in their roots. Dobereiner coined the term "Associative symbiosis" to
denote the occurrence of N2 fixing spirillum in plants. Taxonomy was re-examined and
Tarrand et al. (1978) designated this organism as Azospirillum.
It is an aerobic or micro aerophilic, motile, gram negative bacterium. Non spore former
and spiral shaped bacterium, inhabiting the plant roots both externally and internally. Being
a micro aerophilic organism, it can be isolated on a semi solid malate medium by
enrichment procedures.
Classification
Species: (7) Family – Spirillaceae
1. A. brasilense (C3 plants)
2. A. lipoferum (C4 plants)
3. A. amazonense
4. A. halopraeferens
5. A. irkense
6. A. dobereinerae
7. A. largimobilis
Morphology
Physiology
Mechanism of Action
1. Contribution by BNF
2. Production of PGP substances by bacteria
– Increases root hair development, biomass.
3. Production of PGP substances by plant
– Morphological changes in root cells.
– Increased activity of IAA oxidase
– Increase in endogenous IAA
– Increased mineral and water uptake, root development, vegetative growth and crop
yield.
4. Competition in the rhizosphere with other harmful microorganism.
5. Polyamines and amino acids production.
6. Increased extrusion of protons and organic acids in plants.
Benefits
1. Promotes plant growth.
2. Increased mineral and water uptake, root development, vegetative growth and crop
yield.
3. Inoculation reduced the use of chemical fertilizers (20-50%, 20-40 kg N/ha)
4. Increases cost benefit ratio.
5. Reduces pathogen damage.
6. Inhibit germination of parasitic weeds.
7. Restoration of arid zone, margine mangrove ecosystem.
8. Reduces humic acid toxicity in compost.
- Recommended for rice, millets, maize, wheat, sorghum, sugarcane and co-inoculant
for legumes.
4. BACILLUS
strain (Bacillus subtilis GB03), Quantum-400 (B. subtilis GB03), Rhizovital (Bacillus
amyloliquefaciens FZB42), Serenade (B. subtilis QST713), and YIB (Bacillus spp.), have been
commercialized for improving crop production. Indeed, Bacillus-based bio-fertilizers are more
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5. PSEUDOMONAS
Studies also shows that members of genus Frankia can survive and remain infective on
soils that are devoid of host plants. The host plant of frankia belong to approximately 194
species in 24 genera within 8 families. Owing to their capacity for nitrogen fixation, nodulated
species can grow and improve soil fertility in disturbed sites, and are used in the re-
colonization and reclamation of eroded sand dunes, erosion control and in agroforestry.
7. GLUCONACETOBACTER DIAZOTROPHICUS
It is an endophytic N2 fixer and form to occur on large numbers in roots, stem and
leaf of sugarcane and other sugar rich crops. It was first isolated from sugarcane.
Cavalcanti and Dobereiner (1988) reported this new endophytic N2 fixer and recently
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8. ALGAL BIOFERTILIZERS
The agronomic potential of cyanobacterial N2 fixation in rice fields was recognized in
India during 1939 by De who attributed the natural fertility of tropical rice fields to N2 fixing
blue green algae. The rice field ecosystem provides an environment favorable for the growth
of blue green algae with respect to their requirements for light, water, high temperature and
nutrient availability.
Algal biofertilizers constitutes a perpetual source of nutrients and they do not
contaminate ground water and deplete the resources. In addition to contributing 25-30 kg
N ha-1 of biologically fixed N2, they can also add organic matter to the soil, excrete growth
promoting substances, solubilizes insoluble phosphates and amend the physical and
chemical properties of the soil.
Blue green algae are a group of prokaryotic, photo synthetic microscopic
plants, vigorously named as Myxophyceae, Cyanophyceae and Cyanobacteria. They show
striking morphological and physiological similarities like bacteria and hence called as
cyanobacteria.
CYANOBACTERIA
They are the photosynthetic bacteria and some of them are able to fix N2. They
can be divided into two major groups based on growth habit.
a) Unicellular forms and
b) Filamentous forms.
N2 fixing species are from both groups, found in paddy fields, but the predominant
ones are the heterocystous filamentous forms.
Cyanobacteria are not restricted to permanently wet habitats, as they are resistant
to desiccation and hot temperatures, and can be abundant in upland soils. However wet
paddy soils and overlying flood waters provide an ideal environment for them to grow and
fix N2.
Natural distribution
BGA are cosmopolitan in distribution and more widely distributed in tropical zone.
Free living cyanobacteria can grow epiphytically on aquatic and emergent plant as well as in
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flood water or on the soil surface. Heterocystous cyanobacteria formed less than 10% of the
population of eukaryotic green algae and the abundance increased with the amount of
available phosphorus and with the pH value over the range 4.0 – 6.5.
The N2 fixing forms generally have a specialized structure known as heterocyst. The
BGA have minimum growth requirement needing only diffused light, simple inorganic
nutrients and moisture. The heterocysts which are modified vegetative cells, because of
their thick walls and absence of photonactin II in photosynthesis, act as ideal sites for N2
fixation under aerobic conditions. Although the nitrogenase is present in vegetative cells, it
remains inactive because of the presence of oxygenic photosynthesis. They built up natural
fertility (C, N) in soil.
The blue green algal culture's composite inoculum consists of Nostoc, Anabaena,
Calothrix, Tolypothrix, Plectonema, Aphanotleca, Gleocapsa, Oscillatoria, Cylindrospermum,
Aulosira and Scytonema.
The main taxa of N2 fixing cyanobacteria
Group Genera DNA
(mol % GC)
Group-I. Unicelluar: single cells Gloeothece, Gloeobacter, Synechococcus, 35-71
or cell aggregates Cyanothece, Gloeocapsa, Synechocystis,
Chamaesiphon, Merismopedia
Introduction
Though most soils contain appreciable amounts of inorganic P, most of it being
insoluble forms, cannot be utilized by crops unless they are solubilized. Soils also contain
organic P that could not be utilized by plants only when it is mineralized. Phosphate
solubilizing microorganisms not only able to solubilize insoluble forms of inorganic P but are
also capable to mineralize organic forms of P, thus improving the availability of native soil P
making their P available to plants. PSM can also solubilize P from rock phosphate (RP), slag
or bone meal making their P available to plants.
Thus PSM biofertilizer being economical and environmentally safe offers a viable
alternative to chemical fertilizers.
Microorganisms involved
Many microorganisms can solubilize inorganic phosphates, which are largely
unavailable to plants. Microbial involvement in solubilization of inorganic phosphate was first
shown by Stalstron (1903) and Sacket et al. (1908) gave conclusive evidence for bacterial
solubilization of RP, bone meal and TCP.
Various bacteria and fungi reported to solubilize different types of insoluble
phosphates. Not only solubilizes but also mineralize organic P compounds and release
orthophosphates.
In general PSM constitute 0.5 – 1.0% of soil microbial population with bacteria and
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out numbers the fungi by 2 – 150 folds. But bacteria may lose the P solubilizing ability while
sub culturing and fungi do not lose. Among bacteria, aerobic spore forming bacteria are
more effective P solubilizers. A. awamori & A. niger, Bacillus polymixa & Penicillium striata are
effective in solubilization of phosphate.
II. MYCORRHIZAE
Mycorrhiza (fungus root) is the mutualistic association between plant roots and
fungal mycelia. Frank (1885) gave the name "mycorrhiza" to the peculiar association
between tree roots and ectomycorrhizal fungi. 95% of the plant species form mycorrhizae.
It can act as a critical linkage between plant roots and soil. This association is characterized
by the movement of plant produced carbon to fungus and fungal acquired nutrients to
plants. Mycorrhizal fungi are the key components of the rhizosphere are considered to have
important roles in natural and managed ecosystems.
Types of mycorrhiza
Mycorrhizal associations vary widely in structure and function. Two main groups of
mycorrhizae are recognized; the ectomycorrhizae and endomycorrhizae, although the rare
group with intermediate properties, the ectendotrophic mycorrhizae.
1. Ectomycorrhiza
The fungal hyphae form a mantle both outside the root and within the root in the
intercellular spaces of the epidermis and cortex. No intracellular penetration into epidermal
or cortical cells occurs, but an extensive network called the Harting net is formed between
these cells. Sheath or Mantle increases the surface area of absorbing roots and offers
protection to the roots. Harting net can act as storage and transport organ for P.
Ectomycorrhizae are common on trees, including members of the families pinaceae
(Pin, Fir, Spruce, Larch, Semlock), Fagaceae (Willow, Poplar, Chesnut), Betulaceae (Birch,
Alder), Salicaceae (Willow, Poplar) and Myrtaceae.
The fungi forming Ectomycorrhizal association are coming under Basidiomycotina and
Ascomycotina. eg: Laccaria laccata, Suillus, Rhizopogan, Amanita and Boletus.
2. Endomycorrhizae
Endomycorrhizae consist of three sub groups, but by far the most common are the
Arbuscular Mycorrhizal fungi. Fungi under AM are the members of Endogonaceae and they
produce an internal network of hyphae between cortical cells that extends out into the soil,
where the hyphae absorb mineral salts and water. This fungus do not form an external
mantle but lives within the root. In all forms, hyphae runs between and inside the root cells
which includes,
Ericoid mycorrhiza - Associated with some species of Ericaceous plants
Orchid mycorrhiza - associated with orchid plants
Arbuscular mycorrhiza - associated with most of the plant families
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Colonization Process
Roots do not show visual morphological changes due to AM colonization. AM fungal
infection into a host occurs by germination of spore, hyphal growth through soil to host
roots, penetration of host roots and spread of infection inter and intracellularly in the root
cortex. Colonization occurs under two phases: (1) Extra matrical phase and (2) Intra radical
phase.
Extra matrical phase: Events occurring outside the root after the germination of
chlamydospores. Mycelium explores larger soil volume. Fungal growth can be 80-130 times
the length of root. Extra matrical hyphae (EMH) are larger in diameter than inner hyphae.
Once the fungus recognises the plant, appresorium is formed in the host roots and
penetration occurs via the appresorium. EMH ends with resting spores in soil.
Intra radical phase: Events occurring inside the root cortex. After penetrating the cortex,
the fungus may produce intercellular as well as intracellular hyphae in the cortical cells.
Forms two morphological structures namely arbuscules and vesicles inside the cortical cells.
Arbuscules: are the first formed structures after the hyphal entry into the cortical cells.
Arbuscules are the fine dichotomously branched hyphal filaments look like little trees.
Arbuscules start to form approximately 2 days after penetration. They are considered as the
major site of exchange between the fungus and host root. They are short lived (4-13
days) and degenerate.
Vesicles: Following the formation of arbuscules, some species of fungi also form vesicles in
the roots. Terminal or intercallery hyphal swellings of the hyphae called vesicles. Vesicles
contain lipids and cytoplasm. They act as P storage organ and they ever be present in the
root. Size of the vesicles is about 30-100 µm. In vesicles P can be accumulated as
polyphosphates.
EMH, vesicles and Arbuscules play a key role in nutrient transfer particularly in mobilisation
of phosphorus.
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Mechanism of action
The beneficial effect on plant growth and yields following inoculation with VAM is
attributed to
(i) improved mineral nutrition, especially P (P, Zn, Cu, K, S, NH4)
(ii) Mobilization of nutrients through greater soil exploration.
(iii) Protection of host roots against pathogen infection.
(iv) Improved water relation
(v) Better tolerance to stress like salinity, heavy metal pollution
(vi) Protection against transplantation shock.
Continued…..
Arbuscules vesicles.
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- Rhizosphere modification
- Siderophore production.
- Absorb and transport P beyond the depletion zone around the root.
- P absorption by EMH is 1000 times faster than normal hyphae and 3-4 times
greater.
Disease resistance
Chelating effect
Siderophores, bind iron tightly to prohibit its reaction with soluble phosphate and rather
help release PO4 fixed as ferric phosphate. It is important in acid soils, where ferric PO4 is
one of the major forms.
The extent of PO4 solubilization depends on the type of organisms involved. The
genus Bacillus showed maximum activity followed by Penicillium and Aspergillus.
Streptomyces was least effective.
The principal mechanism for mineral phosphate solubilization is the production of organic
acids and phosphatases play a major role in the mineralization of organic phosphorus in the soil.
It is generally accepted that the major mechanism of mineral phosphate solubilization is the
action of organic acids synthesized by soil microorganisms.
Several soil bacteria and fungi, notably species of Pseudomonas, Bacillus, Penicillium and
Aspergillus etc. sectere organic acids and lower the pH in their vicinity to bring about dissolution
of bound phosphates in the soil. Gluconic acid seems to be the most frequent agent of mineral
phosphate solubilization. Also, 2-ketogluconic acid is another organic acid identified in the
strains with phosphate solubilizing ability.
Strains of Bacillus were found to produce mixtures of lactic, isovaleric, isobutyric and
acetic acids. Other organic acids, such as glycolic, oxalic, malonic and succinic acid have also
been identified among phosphate solubulizers. Strains from the genera Pseudomonas, Bacillus
and Rhizobium are among the most powerful phosphate solubulizers.
Sterilization:
Elimination of all viable microbes from a material is known as sterilization. Sterilization
is nonselective process. It is very important stage for any microbiological work. The success of
proper sterilization ensures quality of final product. All equipment and media to be used
during the handling of the microorganism must be sterile.
Disinfection:
Disinfection is a way to reduce the contaminant load. It removes potentially infective
microbes, but does not render the object sterile. Many different methods of sterilization are
being used. The sterilization method you use depends on the equipment you have and what it
is you are sterilizing. As a general rule, the following methods are appropriate.
Laboratory growth media
Sterilize as above using wet heat sterilization or dry heat sterilization in an oven (see
lab techniques) at 160°C for 1-2 hours. If you have no autoclave, pressure cooker or oven,
you can use certain chemical agents such as strong acids or alkalines, phenols or ethylene
oxide. All chemical methods are potentially hazardous to the operator and should be avoided
where possible.
Sterilization of carrier material is essential to keep high number of inoculant Bacteria on carrier
for long storage period.
Gamma-irradiation is the most suitable way of carrier sterilization, because the sterilization
process makes almost no change in physical and chemical properties of the material. (In brief,
carrier material is packed in thin-walled polyethylene bag, and then gamma-irradiated at 50
kGy (5 Mrads).
Another way of carrier sterilization is autoclaving. Carrier material is packed in a partially
opened, thin-walled polypropylene bags and autoclaved for 60 min at 121 °C. It should be
noted that during autoclaving, some materials changes their properties and produce toxic
substance to some bacterial strains.
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Non-toxic to microorganisms;
Carrier provides a nutritive medium for growth of bacteria and prolongs their survival
in culture as well as on inoculated seed. The carriers are powdered to 250 to 300 mesh
about 75 micron pore size. If peat is used of 300 meshes is neutralized with 1 % CaCO3 and
sterilized at 15 PSI for 4 hours in autoclave.
Cell protectants viz. trehalose dissolved separately and add in to broth before
sterilization.
The sterilization of broth is to be carried out at 15 PSI for 15 minutes.
This stock solution inoculated with pure starter culture at 10 ml/litre under aseptic
condition in conical flasks.
Incubate the flask at 28˚ C for 2 to 5 days.
This broth fill up in previously sterilized polypropylene bottles and make it air tight by
screw cap.
Labelled it properly with product of specific strain for which crop it is used application
instructions, expiry date and quantity required for seed treatment or quantity required
for soil application.
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2) The inoculant should contain minimum of 108 viable cells of bioinoculant / gram of
carrier on dry weight basis when it is started at 25 to 30 ˚C.
5) Inoculant show effective nodulation/ nitrogen fixed on particular crop before expiry
date.
6) The carrier material should be in the form of powder i.e. peat, lignite, peat soil and
humus.
7) Inoculant should be packed in 50-75 micron low density polythene bags (LDP bags).
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1) Seed Treatment –
This is the most common practice of applying biofertilizers. In this method, the
biofertilizers are mixed with 10% solution of jaggary. The slurry is then poured over the seeds
spread on a cemented floor and mixed properly in a way that a thin layer is formed around
the seeds. The treated seeds should be dried in the shade overnight and then they should be
used. Generally, 750 grams of biofertilizer is required to treat the legume seeds for a one-
hectare area.
2) Seedling Treatment –
Generally this method is used in seedlings of transplanted crops like chilli, vegetable
seedlings, onion, etc. The seedling treatment involves following steps:
The seedling roots of transplanted crops are treated for half an hour in a solution of
biofertilizers before transplantation in the field. In this method, the seedlings required for one
acre are inoculated using 2–2.5 kg biofertilizers. For this, a bucket having adequate quantity
of water is taken and the biofertilizer is mixed properly. The roots of the seedlings are then
dipped in this mixture so as to enable the roots to get inoculum. These seedlings are then
transplanted.
3) Soil Application
When biofertilizer application to seed or seedlings is not possible, then soil application
method is followed. Soil application method involves following steps:
1) Seed Treatment –
Treatment 1 kg seed with 25 ml of liquid biofertilzers and seed are kept for 10
minutes. Then dry the seeds in shade and sow as early as possible preferably during morning
or evening hours for the seeds like cotton (hard coat) treatment should be carried out
overnight.
2) Seedling Treatment –
Root system of seedlings is to be dipped in liquid biofertilizer for 8-10 minutes so that
root system get high population of bioinoculant. The liquid biofertilizer 500 ml is sufficient for
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3) Soil Application –
First 100 ml liquid biofertilizer diluted in 5 litre of water and then fix such solutions in
50 kg cowdung and 5 kg rock phosphate. Keep this mixture overnight and next day apply
the mixture over one acre.
4) Soil Pelleting –
Take 2 kg fine sieved soil sprinkle 25 ml liquid biofertilizer on it. Keep this mixture
overnight. Take about 8 to 10 kg seed and mix with mixture. Then allow the seeds to dry in
shade before sowing in the field.
5) Foliar Spray –
Dilute 3 litre liquid biofertilizer in 200 litres of water and spray the solution on one
acre crop preferably in the evening.
6) Drip Irrigation –
2 litre liquid biofertilizer is given through drip irrigation for one acre area.
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Storage of Biofertilizer
The packet should be stored in a cool place away from the heat or direct sunlight.
The packets may be stored at room temperature or in cold storage conditions in lots in plastic
crates or polythene / gunny bags.
The population of inoculant in the carrier inoculant packet may be determined at 15 days
interval. There should be more than 109 cells/g of inoculant at the time of preparation and 107
cells/g on dry weight basis before expiry date.
Biofertilizer packets need to be stored in a cool and dry place away from direct sunlight and
heat.
Right combinations of biofertilizers have to be used.
As Rhizobium is crop specific, one should use it for the specified crop only.
Other chemicals should not be mixed with the biofertilizers.
When purchasing, one should ensure that each packet is provided with all necessary
information like name of the product, name of the crop for which it is intended, name and
address of the manufacturer, date of manufacture, date of expiry, batch number and
instructions for use.
The packet has to be used before its expiry, only for the specified crop and by the
recommended method of application.
Biofertilizers are live products and require care in their storage.
Both nitrogenous and phosphate biofertilizers are to be used to get the best results.
It is important to use biofertilizers along with chemical fertilizers and organic manures.
Biofertilizers are not a replacement of fertilizers but can supplement plant nutrient
requirements.
Dr. J.S. Bamboriya