Sample 2
Sample 2
9
Innate defences can be classified into three main groups: microbiome. Increasing evidence supports a correlation between
1. Barriers to infection the microbiota and disease development, such as cancer, cardio-
2. Cells vascular disease, diabetes and neurological disorders.1,2 For that
3. Serum proteins and the complement system reason, manipulation of the microbiota, as a potential disease
treatment, has attracted a lot of interest. Faecal microbiota trans-
plantation (FMT), which refers to the introduction of faecal mat-
ter from a donor to the intestinal tract of a recipient, has emerged
BARRIERS TO INFECTION as a potential treatment for various conditions, such as the
Clostridium difficile infection (CDI), cancer and inflammatory
Physical and mechanical bowel disease (IBD), with very promising results (cure rates up to
90% in CDI).3,4 Other approaches include the use of pro- and
Skin and mucosal membranes act as physical barriers to the entry prebiotics, administration of antibiotics and engineering of gut
of pathogens. Tight junctions between cells prevent the majority bacteria.
of pathogens from entering the body. The flushing actions of
tears, saliva and urine protect epithelial surfaces from coloniza-
tion. High oxygen tension in the lungs, as well as body tempera-
CLINICAL NOTES
ture, can also inhibit microbial growth.
In the respiratory tract, mucus is secreted to trap microorgan- Clostridium difficile (C. diff): Hospitalized patients that
isms. They are then mechanically expelled by: are being treated with certain antibiotics (such as
clindamycin, cephalosporins and fluoroquinolones) are
• Beating cilia (mucociliary escalator)
at greater risk of developing a C. diff infection because
• Coughing of the disruption of the patient’s normal gut flora. C. diff
• Sneezing infection causes watery diarrhoea, nausea and
abdominal pain; possible complications include toxic
Chemical megacolon and sepsis. The infection can rapidly spread
between patients in a ward, so adequate hand washing
The growth of microorganisms is inhibited at acidic pH (e.g., in and isolation of infected patients are essential.
the stomach and vagina). Lactic acid and fatty acids in sebum
(produced by sebaceous glands) maintain the skin pH between 3
and 5. Enzymes such as lysozyme (found in saliva, sweat and
tears) and pepsin (present in the gut) destroy microorganisms.
CELLS OF INNATE IMMUNITY
Biological (normal flora—the
The cells of the innate immune system consist of:
microbiome)
• Phagocytes
The microbiome is a dynamic collection of organisms (bacteria, • Natural killer (NK) cells
viruses and fungi) that live normally in and on our body (skin, res- • Degranulating cells
piratory system, gastrointestinal and urogenital tract). It consti- • Dendritic cells (DCs)
tutes an essential element of the innate immune system, as it
influences the effectiveness of the immune responses and main-
tains the balance between proinflammatory and antiinflammatory
Phagocytes
responses, promoting immune homeostasis. The microbiome may Phagocytes (macrophages and neutrophils) engulf and then
change in response to various factors, such as stress, diet, medica- destroy pathogens. Macrophages are long-lived sentinel cells sta-
tions and other environmental factors. tioned at likely sites of infection; upon infection, they release
Dysbiosis refers to the loss of the gut homeostasis, resulting in cytokines that recruit the shorter-lived but more actively phago-
a change in the distribution, composition or diversity of the cytic neutrophils.
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The innate immune system
CLINICAL NOTES
Neutropenic sepsis: Neutropenic individuals are at an
increased risk of serious bacterial infections and sepsis.
3
Neutropenic sepsis is often difficult to detect because
of the decreased immune response to pathogens; any Phagolysosome
suspicion of infection should be investigated, and the
patient treated accordingly. Treatment of neutropenic
sepsis includes fluid resuscitation (in case of Microbial
hypotension) and broad-spectrum antibiotics, along degradation
with antivirals or antifungals, depending on the
suspected offending organism. Close monitoring of
clinical parameters (blood pressure, oxygen saturation,
Fig. 9.1 Phagocytosis. Pseudopodia surround the pathogen. (1)
heart rate and temperature), along with biochemical
They fuse around the organism, producing a vesicle known as a
markers (such as C-reactive protein (CRP) and lactate)
phagosome. (2) Lysosomes fuse with the phagosome to form
is essential for a favourable outcome.
phagolysosomes. (3) Proteins within the lysosome, and other
granules that fuse with the phagolysosome, lead to degradation
of the organism. The microbial products are then released.
Monocytes and macrophages
Monocytes and macrophages comprise the other major group Macrophages phagocytose and destroy their targets using
of phagocytic cells. Monocytes account for 5% to 10% of the similar mechanisms to neutrophils. The rate of phagocytosis can
circulating white cell count and circulate in the blood for be greatly increased by opsonins, such as immunoglobulin (Ig) G
approximately 8 hours before migrating into the tissues, and the complement protein C3b. Neutrophils and macrophages
where they differentiate into macrophages; these mac- have receptors for these opsonins, which may be bound to the
rophages can live for decades. Some macrophages become antigenic surface. Intracellular pathogens, for example
adapted for specific functions in particular tissues, for Mycobacterium, can prove difficult for macrophages to kill. They
example Kupffer cells in the liver, glial cells in the brain and are either resistant to destruction inside the phagosome or can
osteoclasts in bone. evade by entering the macrophage cytoplasm. For the immune
In comparison to monocytes, macrophages: system to act against these pathogens, T-cell help is required (see
• Are larger and longer lived Chapter 10).
• Have greater phagocytic ability In addition to phagocytosis, macrophages can secrete a num-
• Have a larger repertoire of lytic enzymes and secretory ber of compounds into the extracellular space, including
products cytokines (TNF, IL-8 and IL-1) and hydrolytic enzymes.
116
Cells of innate immunity 9
Macrophages express a wide array of surface molecules Because the C-type lectin receptors are activated by carbohy-
including: drates on normal host cells, the KIR system acts to prevent NK
• Receptors for complement and the Fc portion of IgG cells from attacking the host. Conversely, a cell that is not
• Pattern recognition molecules (PRMs) expressing class I MHC molecules will not activate the KIR
• Cytokine receptors, for example, TNF-α and interferon-γ system and so would be attacked by NK cells. This is useful in
(IFN-γ) eliminating body cells that have downregulated class I MHC
• MHC and B7 molecules (to activate the adaptive immune because of viral infection (e.g., herpes) or mutation; the lack of
response) MHC I in these infected or mutated cells evades attack from
T cells but this same MHC I deficiency causes NK cells to attack.
Macrophages can be activated by:
NK cells can also destroy antibody-coated target cells irre-
• Cytokines such as IFN-γ spective of the presence of MHC molecules, a process known as
• Contact with complement or products of blood coagulation antibody-dependent cell-mediated cytotoxicity (ADCC). This
• Direct contact with the target through PRM stimulation occurs because killing is initiated by cross-linking of receptors
Following activation, macrophages become more efficient for the Fc portion of IgG1 and IgG3.
phagocytes and have increased secretory and microbicidal activ- NK cells are not clonally restricted, have no memory and are
ity. They are also able to process and present antigen in association not very specific in their action. They induce apoptosis in target
with class II major histocompatibility complex (MHC) molecules, cells (Fig. 9.2) by:
stimulating the adaptive immune system (see Chapter 10). • Ligation of Fas or TNF receptors on the target cells; NK cells
In comparison to neutrophils, macrophages: produce TNF and exhibit Fas ligand (FasL). This initiates a
• Are longer-lived (they do not die after dealing with sequence of caspase recruitment and activation, resulting in
pathogens) apoptosis.
• Are larger (diameter 25–50 µm), enabling phagocytosis of • Degranulation by NK cells, which releases perforins and
larger targets granzymes. Perforin molecules insert into and polymerize
• Move and phagocytose more slowly within the target cell membrane. This forms a pore through
• Retain Golgi apparatus and rough endoplasmic reticulum which granzymes can pass. Granzyme B then initiates
and can therefore synthesize new proteins, including apoptosis from within the target cell cytoplasm.
lysosomal enzymes and secretory products The induction of apoptosis is a crucial tool for the immune
• Can act as antigen-presenting cells (APCs) system. It can be used for targeted killing of infected or mutated
cells and is also a key part of the development of the adaptive
Killing by phagocytes immune system (see Chapter 10).
The process of phagocytosis allows cells to engulf matter that
needs to be destroyed. The cell can then digest the material in a
HINTS AND TIPS
controlled fashion before releasing the contents. The process of
phagocytosis is shown in Fig. 9.1. Fas receptors are found on human cells. Once they bind
to the FasL, they stimulate apoptosis.
Natural killer cells
Natural killer cells develop from lymphoid progenitor cells, but
unlike the other types of lymphocytes (T cells and B cells; see Degranulating cells
Chapter 10), their function mainly lies in the innate immune
response. NK cells use cell-surface receptors to identify virally Mast cells and basophils (Chapter 1:
modified or cancerous cells. Similar to macrophages, NK cells do Basophils)
not require T-cell help to kill pathogens but function more effec- Mast cells and basophils have similar functions but are found in
tively when T-helper cells secrete IFN-γ. One set of receptors different locations; basophils comprise <1% of circulating white
activates NK cells, initiating killing; others inhibit the cells: cells, whereas mast cells are resident in the tissues.
• Activating receptors include calcium-binding C-type High concentrations of mast cells are found close to blood
lectins, which recognize certain cell-surface carbohydrates. vessels in connective tissue, skin and mucosal membranes. The
• Inhibitory receptors include killer-cell immunoglobulin-like two types of mast cells – mucosal and connective tissue – differ in
receptors (KIRs). KIRs are members of the Ig gene their tissue distribution, protease content and secretory profiles.
superfamily (see Chapter 10) and recognize class I MHC Mast cells function by discharging their granule contents (such
molecules on other cells. as histamine, serotonin, bradykinin, prostaglandins and
117
The innate immune system
NK cell
FasL
1 5
TNF-
4
3
Fas
TNF receptor
6
Intracellular
signalling
Apoptosis
Target cell
Fig. 9.2 Mechanism of killing by natural killer (NK) cells. Activation of NK cells in the absence of an inhibitory signal results in
degranulation. (1) Perforins form a pore in the target cell, allowing entry of granzymes (2) (3). Tumour necrosis factor (TNF) produced
by NK cells acts on the target cell’s receptors (4). Fas ligand (FasL) interacts with target cell Fas (5). Intracellular signalling from Fas
TNF receptors and granzymes results in apoptosis (6).
FcRI
HINTS AND TIPS
During severe allergy (anaphylaxis, see Chapter 12:
Anaphylaxis), mast cell tryptase levels increase for a
few hours (median half-life 90 minutes). This is a useful
diagnostic test for anaphylaxis. However, the immediate
Degranulation diagnosis of anaphylaxis is based on clinical symptoms
and examination (breathlessness, chest tightness, face
Fig. 9.3 Activation of mast cells by immunoglobulin E (IgE). or tongue swelling, difficulty swallowing, anxiety,
IgE, produced by plasma cells, binds via its Fc domain to dizziness/loss of consciousness). Tryptase testing may
receptors on the mast cell surface. Cross-linking of these be done after treating the allergic reaction
receptors by an antigen causes an influx of calcium ions (Ca2+) (approximately 4–6 hours) in order to confirm the
into the cell. Calcium ions cause a rapid degranulation of diagnosis (symptoms of anaphylaxis similar to other
inflammatory mediators from the mast cell. FcεRI, High-affinity medical emergencies, such as acute myocardial
IgE receptor. ischaemia and exacerbation of asthma).
leucotrienes). Degranulation is triggered by cross-linking of high-
affinity receptors for the Fc portion of IgE (Fig. 9.3). Cross-linkage
results in an influx of calcium ions into the cell, which induces Eosinophils Chapter 1: Eosinophils
release of pharmacologically active mediators from granules. This Eosinophils comprise 1% to 3% of circulating white cells and are
mechanism allows mast cells to attack larger organisms living in found principally in tissues. They are derived from the
118
Soluble proteins 9
colony-forming unit for granulocytes, erythrocytes, monocytes with the adaptive immune system, initiating a long-lasting, anti-
and megakaryocytes (CFU-GEMM) and their maturation is gen-specific response.
similar to that of the neutrophil (see Chapter 1). They are impor- Dendritic cells are also responsible for maintaining immune
tant in the defence against parasites and cause damage by extra- homeostasis under a steady state, by protecting against the T-cell
cellular degranulation. Their granules contain major basic recognition of self-antigens. This is mediated by the
protein, cationic protein, peroxidase and perforin-like mole- DC-induction of immunosuppressive T-regulatory cells (Tregs)
cules. Peroxidase generates hypochlorous acid, major basic pro- that prevent the initiation of an immune response against self- or
tein damages the parasite’s outer surface (as well as host tissues) nonpathogenic environmental antigens.
and cationic protein acts as a neurotoxin, damaging the parasite’s
nervous tissue.
119
The innate immune system
120
Soluble proteins 9
Activated C4 and C2
C3 convertase
Common pathway
Fig. 9.5 Overview of the complement system. Cell lysis by complement is caused by formation of the membrane attack complex
(MAC). This is formed when C5b, C6, C7, C8 and C9 bind together to form a 10-nm pore in the cell surface. MASP, MBL-associated
serine protease.
121
The innate immune system
The classical pathway enables the production of large quantities of C3b, thus pro-
The classical pathway is triggered by the presence of antibodies ducing a major amplification step in the complement
on the surface of a pathogen. pathway.
IgM is particularly good at activating complement as it is a
pentamer (has five Fc portions): Effectors of complement
• Fc activates C1 C5 is now cleaved into C5a and C5b. C5b then triggers the activa-
• C1 activates C2 and C4 tion of C6–C9. These form the MAC. The MAC attacks patho-
• C2 and C4 activate C3 (C3 convertase) gens by inserting a hole in their cell membrane; the pathogen
then dies via osmotic lysis. The MAC appears to be the only way
the immune system has of killing one family of bacteria, the
The alternative pathway Neisseria (a family that includes meningococcus and
The alternative pathway does not require the presence of an anti-
gonococcus).
body or prior contact with a pathogen to function. It can be trig-
The cleaved fragments C3a and C5a are anaphylatoxins which
gered when autoactivated C3 (‘C3 tickover’) is amplified by the
are chemoattractants for other immune cells which follow the
presence of a molecule embedded in the membrane of an invad-
concentration gradient to the infection. Complement also
ing pathogen or by the lack of a complement inhibitory protein.
opsonizes bacteria as macrophages have receptors for C3b.
C3 is an unstable molecule and without inhibition, spontaneously
These functions are summarized in Table 9.2.
breaks down to the very reactive C3b. C3b then binds factor B,
which undergoes proteolytic cleavage by factor D, creating the
fragments Ba and Bb. The latter binds to the alternative pathway Inhibitors of complement
C3 convertase (C3bBb), generating an amplification loop, which As previously discussed, complement can activate spontaneously
leads to a large deposition of C3b on the target. through the alternative pathway (so-called C3 tickover, which
refers to the constant autoactivation of a small amount of C3).
This offers a surveillance mechanism by constantly monitoring
The lectin pathway the environment for possible pathogens. Complement is regu-
The lectin pathway is activated by two PRMs, the ficolins and the lated by inhibitory molecules which are necessary to prevent
collectins. The latter is comprised of the mannan-binding lectin complement-mediated damage of healthy cells. There are nine
(MBL), which is a normal component of serum, that binds to complement inhibitors which act at various levels throughout the
carbohydrates found on the cell wall of certain bacteria and fungi pathway:
(e.g., Salmonella, Neisseria, Candida albicans). MBL also binds to
• Membrane cofactor protein, complement receptor type 1,
MBL-associated serine proteases (MASP), which bear structural
C4b-binding protein and factor H: these prevent assembly
homology to the C1 complex. MASP then acts on C4 and C2 to
of C3 convertase
generate the C3 convertase of the classical pathway.
• Decay accelerating factor (CD55): this accelerates decay of
C3 convertase
C3 convertase • C1 inhibitor: inhibits C1
With the production of C3 convertase, all three pathways con- • Factor I and membrane cofactor protein: cleave C3b and C4b
verge. C3 convertase has enzymatic effects against C3 and • CD59 (protectin): prevents the formation of the MAC
122
Innate immune system pattern recognition molecules 9
Deficiency in any one of these inhibitory components can seen how they function to defend the body. These are found in
result in disease: solution in the serum and are classified as collectins, being com-
• Hereditary angioedema: deficiency of C1 inhibitor leads to posed of collagen-like and lectin portions. Lectins are any protein
unbalanced, spontaneous activation of the early that binds sugar molecules, usually on the surface of bacteria; for
complement pathway, causing life-threatening swellings. example, MBL binds to the sugar mannose.
• Atypical haemolytic-uraemic syndrome: genetic deficiency in Nucleotide-binding and oligomerization domain (NOD) is a
a complement inhibitor called Factor I leads to activation of pattern recognition molecule found across the body, including in
the late complement cascade, leading to red cell destruction. epithelial cells in the gut. It recognizes certain bacterial cell wall
• Paroxysmal nocturnal haemoglobinuria (PNH): It is caused components and stimulates an immune response. The NOD gene
by a mutation in the PIGA gene that leads to a deficiency in is mutated in some individuals with Crohn disease.
the GPI-linked complement regulators (CD55 and CD59) on Toll-like receptors (TLRs) are a family of about a dozen
the membrane of haematopoietic cells, rendering them PRMs. When they bind their ligand, they send a signal to innate
susceptible to complement-induced cell lysis. Intravascular immune system cells which then secrete cytokines. They have a
haemolysis, increased tendency for thrombosis and bone few important clinical roles. In sepsis, TLR-4 is stimulated by vast
marrow failure constitute the hallmark features of the disease. amounts of lipopolysaccharide found on bacterial cell walls. This
causes release of large amounts of TNF from macrophages,
Therapeutic complement inhibition which in turn activates nitrous oxide synthase causing a fall in
It is now evident that the complement system constitutes a key player blood pressure and organ perfusion.
in maintaining and regulating immune reactions. Its contribution to Drugs designed to bind and stimulate TLRs are being used in
a variety of autoimmune and inflammatory diseases makes it a very situations where it is helpful to stimulate a more powerful
attractive candidate for therapeutic intervention. The approval of the immune response, for example, in some vaccines and cancer
first complement inhibitor, eculizumab (an antibody against comple- treatments.
ment component C5), in 2007 was a major breakthrough in the field,
which changed the outcome in PNH and other diseases.
CLINICAL NOTES
To date, various therapeutic agents have been developed in an
effort to inhibit the complement, such as: Sepsis: Sepsis is when the body’s immune response to
- Inhibitory monoclonal antibodies: C5 inhibitors infection becomes dysregulated, putting the body at
risk of organ failure and death. This can be caused by
(eculizumab, ravulizumab, etc.)
infection, most commonly bacterial but also viral. The
- Small molecule inhibitory peptides: target C5 (nomacopan), role of overactivation of the innate immune system in
Factor B (iptacopan) and Factor D (danicopan) sepsis has been detailed earlier, with the example of
- Aptamers (single-stranded DNA or RNA molecules): siRNA Toll-like receptor–4 receptor activation leading to a fall
for C5 inhibition (cemdisiran) in blood pressure.
- Recombinant complement inhibitors It is important to identify and treat sepsis as fast as
However, inhibition of the complement pathway comes with possible; Fig. 9.6 shows a typical scenario in which a
side effects, such as an increased risk of encapsulated bacteria patient develops sepsis. Sepsis should be suspected in
(particularly N. meningitidis). For that reason, patients who are any patient that develops signs of systemic infection
due to be started on such therapy are required to be appropriately (tachycardia, tachypnoea, pyrexia, hypotension,
decrease in blood oxygen saturation, decreased level of
vaccinated prior to treatment commencement.
consciousness) and has a likely source of infection
A number of other complement inhibitors are currently (urinary tract infection, respiratory tract infection, septic
under investigation in an effort to minimize the side effects (such arthritis, meningitis, etc.). The ‘Sepsis 6’ describes the
as the breakthrough haemolysis in PNH) and offer a better qual- package of management that should be started
ity of life (e.g., by using a subcutaneous instead of an intravenous immediately and aims to prevent organ failure and death:
formulation) to patients requiring such treatment. 1. Give high-flow oxygen
2. Take blood cultures and consider other source
cultures
INNATE IMMUNE SYSTEM PATTERN 3. Give intravenous antibiotics
4. Give a fluid challenge (e.g., 500 mL 0.9% NaCl)
RECOGNITION MOLECULES 5. Measure serum lactate and other blood tests (full
blood count, CRP, urea and electrolytes, blood gases)
Pattern recognition molecules are required for the detection and 6. Monitor urine output
elimination of pathogens. We have already come across the rec-
ognition molecules MBL and C1b in the complement system and
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The innate immune system
Fig. 9.6 (A and B) A 30-year-old patient is admitted with cerebral oedema following a road traffic collision. He is treated with high-
dose corticosteroids, intubated, has a urinary catheter inserted and has multiple venous cannulas inserted. While recovering he
develops a productive cough with a respiratory rate of 23 breaths per minute, has a temperature of 38.2°C, a systolic blood pressure
of 96 mmHg and a pulse of 124 beats per minute. This patient has sepsis. Many factors in his initial treatment predispose him to this.
A chest radiograph shows abscesses typical of Staphylococcal pneumonia, suggestive of a source of infection. The ‘Sepsis 6’
should be started immediately and a senior review sought. (From Helbert M. Immunology for Medical Students. 3rd ed. Philadelphia,
PA: Elsevier; 2016).
Chapter Summary
• The innate immune system provides a broad defence against pathogens. It is made up of
barriers to infection, cellular defences and soluble proteins.
• Barriers to infection can be physical, for example, skin, chemical (e.g., stomach acidity) or
biological (e.g., gut flora).
• Cells of the innate immune system are phagocytes (e.g., macrophages, neutrophils), NK
cells and degranulating cells (e.g., mast cells, eosinophils). Phagocytes generally target
extracellular pathogens, NK cells kill virally infected or cancerous host cells, and
degranulating cells generally target multicellular pathogens (e.g., worms).
• APPs and the complement system make up the soluble protein fraction of the innate
immune system.
• APPs are produced in response to infection and contribute to the innate immune
defence in many ways. They are often measured to aid in diagnosing infection (e.g.,
CRP).
• Complement proteins directly attack pathogens and alert the immune system to their
presence. The complement system is activated via multiple pathways, either by
bacterial cell wall components or antibody bound to pathogens.
• PRMs enable the innate immune system to detect pathogens. Overstimulation of PRMs
by large amounts of pathogen contributes to the symptoms of sepsis.
124
Innate immune system pattern recognition molecules 9
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022-00974-4. 1253(21)00303-4.
2. Weiss GA, Hennet T. Mechanisms and consequences of intestinal 4. Khoruts A, Sadowsky MJ. Understanding the mechanisms of faecal
dysbiosis. Cell Mol Life Sci. 2017;74(16):2959–2977. doi:10.1007/ microbiota transplantation. Nat Rev Gastroenterol Hepatol.
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