0% found this document useful (0 votes)
33 views10 pages

Basics of Molecular Cloning

This instructor's manual provides a comprehensive protocol for cloning the luciferase gene into the pGEM® vector, aimed at teaching basic molecular biology and genetics techniques. It includes detailed steps for excising the gene, purifying the gene fragment, and transforming bacteria, along with necessary materials and safety precautions. The manual is a free educational resource from Promega Corporation, intended for non-commercial use.

Uploaded by

yenbinh
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
0% found this document useful (0 votes)
33 views10 pages

Basics of Molecular Cloning

This instructor's manual provides a comprehensive protocol for cloning the luciferase gene into the pGEM® vector, aimed at teaching basic molecular biology and genetics techniques. It includes detailed steps for excising the gene, purifying the gene fragment, and transforming bacteria, along with necessary materials and safety precautions. The manual is a free educational resource from Promega Corporation, intended for non-commercial use.

Uploaded by

yenbinh
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
You are on page 1/ 10

Basics of Molecular Cloning:

Instructor’s Manual
1. Purpose and Concepts Covered .........................................................................1 This instructor’s
! manual is avaliable
2. Protocol for Cloning the Luciferase Gene into the pGEM® Vector...................2 online only.
A. Excising the Luciferase Gene from Surrounding DNA.....................................2 This teaching resource is
made available free of
B. Purifying the Gene Fragment...........................................................................4
charge by Promega
C. Ligating the Gene into the Vector ....................................................................6 Corporation. Reproduction
permitted for noncommer-
D. Transforming Bacteria with Your Clone ............................................................7 cial educational purposes
E. Expressing Luciferase in E. coli .......................................................................9 only. Copyright 2010
Promega Corporation. All
3. Composition of Buffers and Solutions .............................................................11 rights reserved.

1. Purpose and Concepts Covered

This introductory cloning laboratory is for use in courses that cover basic topics in molec-
ular biology and genetics. Molecular cloning is a basic technique used in a molecular
biology labs. In this manual, we include a protocol for isolating the luciferase gene from
DNA using restriction digestion and cloning it into the multiple cloning region of a vector.
The cloned luciferase gene is then expressed in E. coli.

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
Printed in USA. IM006
3/10 Page 1
2. Protocol for Cloning the Luciferase Gene into the pGEM® Vector

Preparation for the Laboratory

Materials Required
• pGEM®-luc DNA (Cat.# E1541)
• pGEM®-4Z Vector (Cat.# P2161)
• BamHI restriction enzyme (Cat.# R6021; 10u/µl)
• SacI restriction enzyme (Cat.# R6061; 10u/µl)
• Buffer E (supplied with BamHI enzyme)
Ethidium bromide
! is a carcinogen.
• Acetylated BSA (supplied with restriction enzymes)
• Agarose, LMP, Preparative Grade for Large Fragments (>1,000bp; Cat.# V2831)
Be sure to follow your
• TBE Buffer, 10X, Molecular Biology Grade (Cat.# V4251; or have students make
institution’s safety and
disposal instructions
their own buffer)
when working with • Ethidium Bromide Solution, Molecular Biology Grade (Cat.# H5041)
ethidium bromide. Note: The gel fragment cleanup system will not work with DNA that
has been stained with methylene blue.
• BenchTop pGEM® DNA Markers (Cat.# G7521)
• Wizard® SV Gel and PCR Clean-Up System (Cat.# A9281)
• Blue/Orange Loading Dye, 6X (Cat.# G1881)
• T4 DNA Ligase (Cat.# M1801)
• agarose gel electrophoresis apparatus and power supply
• 37°C water bath
• pipettors (0.5–10µl and 10–200µl) and appropriate sterile pipet tips
• long-wave UV light box and camera or scanner
• 1.5ml sterile tubes
• gloves

2.A. Excising the Luciferase Gene from Surrounding DNA

In this part of the protocol, you will be isolating the gene of interest, the firefly
luciferase gene, from surrounding DNA. To remove the luciferase gene, you will be
performing a restriction digest using BamHI and SacI. You also will need to perform
the same double digest on your target cloning vector (pGEM®-4Z Vector).

You will need to set up your restriction digest in a total volume of 20µl using the
guidelines below:

Restriction Enzyme Buffer E, final concentration 1X


2µg of Acetylated BSA
1µg of DNA
Nuclease-Free Water to a volume of 19.0µl

Mix these reagents by pipetting and then add:

5 units of BamHI in a total of 0.5µl


5 units of SacI in a total 0f 0.5µl

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
IM006 Printed in USA.
Page 2 3/10
1. Calculate the volume of Buffer E you will need in the reaction to achieve a
final concentration of 1X.
Note to the instructor: Buffer E is supplied as a 10X solution. The students will
need to dilute the Buffer E so that its final concentration in the reaction is 1X.
Using CV = CV,
(y µl) (10X Buffer E) = (20µl of 1X Buffer E)
10y = 20
y = 2µl of 10X Buffer E
2. Calculate the volume of DNA you will need to add to your reaction in order
to digest 1µg.
Note to the instructor: The concentration of the pGEM®-luc Vector is
provided on the lot-specific product information sheet that accompanies the
vector. Using that information, your students can calculate the volume of
DNA to add to their reaction.
They can do the same for the target vector (pGEM®-4Z Vector).
3. Calculate the volume of Acetylated BSA you will need to add to your reac-
tions, so that you have a total of 2µg of Acetylated BSA in your reaction. The
Acetylated BSA is supplied at a concentration of 10µg/µl.
Note: Pipetting volumes smaller than 0.5µl is very difficult. When determin-
ing how much Acetylated BSA to add, you may need to dilute the BSA to a
lower concentration so that you can pipette a larger volume into your reac-
tion (0.5 or 1.0µl).
4. Calculate the volume of water to add to bring the volume (without enzyme)
to a total of 19.0µl. Enter the volumes of each component into the table
below:

Reaction Component Concentration Volume to Add

Nuclease-Free Water
(add to a total volume of 19.0µl) NA _______
Restriction Enzyme Buffer E 10X _______

Acetylated BSA ______ _______

DNA ______ _______

5. Add the components, in the order listed, to a sterile 1.5ml tube. Mix them by
pipetting.
6. Calculate the amount of each enzyme to add to your reaction. You will need
to add a total of 5 units of each enzyme. Using the concentration of each of
the enzymes provided to you by your instructor, determine what dilution (if
any) you need to make so that 0.5µl of the enzyme contains 5 units.
Note: High concentrations of either glycerol or enzyme can interfere with
your restriction digestion. Therefore, be sure that you do not add more than
1.0µl total of enzymes to your digest.
7. Add 5 units of BamHI and 5 units of SacI to your restriction digest. Mix
gently by pipetting.

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
Printed in USA. IM006
7/10 Page 3
8. Close the tube and centrifuge for a few seconds in a microcentrifuge to pull
all of the liquid to the bottom of the tube.
9. Incubate at 37°C for 1 hour.
Note to the students: You should have performed two restriction diges-
tions: one of pGEM®-luc DNA to remove the luciferase gene insert, and one
of the pGEM®-4Z Vector to prepare it to receive the insert.

2.B. Purifying the Gene Fragment

After your restriction digest is complete, you will separate the luciferase gene frag-
ment (~1,740bp) from the remainder of the DNA using agarose gel electrophoresis.
The luciferase gene DNA can be purified from the gel using a commercially available
DNA cleanup system. You also will need to gel purify your restricted target vector
(pGEM®-4Z Vector), which will be a fragment of ~2,733bp.

1. Determine the appropriate agarose gel composition to use to isolate the


luciferase gene from the other DNA in the restriction digest using the table
provided at: www.promega.com/techserv/techref/agarose_polyacryl.htm
(Gel percentages: resolution of linear DNA on agarose gels). You will need
to clearly separate the 1,740bp gene fragment from the other fragment that
will be created by the digest (3,191bp).
Note to the instructor: We recommend 1.5% agarose.
Wear appropriate
! safety glasses 2. Prepare 100ml of 10X TBE Gel Running Buffer using the following
when working over a guidelines.
UV light box. 0.89M Tris base
0.89M boric acid
20mM EDTA (pH 8.0)
Notes to the instructor:
Molecular Weight (MW) Tris base 121.14g/mol; MW boric acid 61.83g/mol
Recipe for 1L 10X TBE from promega.com: Dissolve 108g of Tris base and
55g of boric acid in 900ml of deionized water. Add 40ml of 0.5M EDTA (pH
8.0), and increase the final volume to 1 liter. Store at room temperature or
4°C.
Make 1X TBE by diluting the 10X TBE with water. Determine the final vol-
ume of 1X TBE needed. Caluculate how much 10X TBE and how much
water to mix to make this volume of 1X TBE.
3. Prepare your agarose gel 1.5% weight/volume agarose in 1X TBE (e.g.,
1.5g of agarose in 100ml of 1X TBE). Put the agarose and the buffer in a
flask that is at least twice the volume of buffer used. Heat the buffer and
agarose in a microwave oven or on a hot plate to melt the agarose. (Do not
let the buffer boil over. The loss of buffer will change the agarose percent-
age.) Allow the solution to cool to 50°C (cool enough to hold comfortably in
your hand) before pouring the solution into the gel tray. Add ethidium bro-
mide to a final concentration of 5µg/ml to the cooling solution, and swirl the
flask to mix. Remember to put in the comb to create loading wells before the
agarose solidifies.

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
IM006 Printed in USA.
Page 4 3/10
2.B. Purifying the Gene Fragment (continued)

Notes to the instructor:

You will need to provide detailed instructions (volume, inserting comb, etc.)
for gel preparation based on the particular gel aparatus you are using.
We recommend adding ethidium bromide (final concentration 5µg/ml) to the
gel before it is poured rather than using it in the gel running buffer. Although
the sizing is more accurate when the gel is stained after running, confining
the ethidum bromide to the gel itself helps manage disposal.
4. When the gel has solidified, remove the comb, being careful not to tear the
wells. Place the gel in the gel box and cover with 1X TBE buffer.
5. Remove 5µl from each of your restriction digests. Add 1µl of 6X blue/orange
loading dye. Add 1µl of dye to 5µl of the uncut DNA.
6. Load digests and run the gel until the markers in the loading dye have
migrated to the appropriate point in the gel to have separated the fragments
in which you are interested. (See reference material at:
www.promega.com/techserv/techref/agarose_polyacryl.htm for help
determining this).
7. Turn off the electricity flowing to the gel box. Remove the gel, and place it on
a long-wave UV box. (Short wave UV can damage the DNA.) Using a
scalpel or razor blade, cut the 1,740bp gene fragment from the gel, and
place it in a preweighed 1.5ml microcentrifuge tube.
8. Weigh the tube with the gel slice, and determine the weight of your gel slice.
Note: At this point you will use the Wizard® SV Gel and PCR Clean-Up
System (Cat.# A9281) to extract your insert DNA from the gel slice. Detailed
instructions are available in Technical Bulletin #TB308, available at:
www.promega.com/tbs/
9. Add 10µl of Membrane Binding Solution per 10mg of gel slice. Vortex and
incubate at 50–65°C for 10 minutes or until gel slice is completely dissolved.
10. Insert the SV Minicolumn into a Collection Tube from the Wizard® SV Gel
and PCR Clean-Up System.
11. Transfer the dissolved gel mixture to the Minicolumn assembly. Incubate at
room temperature for 1 minute.
12. Centrifuge at 16,000 × g for 1 minute. Discard flowthrough and reinsert
Minicolumn into Collection Tube.
13. Add 700µl of Membrane Wash Solution (ethanol added). Centrifuge at
16,000 × g for 1 minute. Discard flowthrough and reinsert Minicolumn into
Collection Tube.
Note: You can have students calculate the RPM of the centrifuge to achieve
a target RCF (in this case the target is 16,000 × g) for your
particular microcentrifuge using the radius of the rotor. There is an online
calculator at: www.sciencegateway.org/tools/rotor.htm, but if you
prefer, your students can use this equation:
g = (1.118 × 10-5) RS2
Where g is the relative centrifugal force, R is the radius of the rotor in cen-
timeters, and S is the speed of the centrifuge in revolutions per minute.

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
Printed in USA. IM006
7/10 Page 5
Note: The Wizard® SV 14. Repeat Step 13 with of 500µl Membrane Wash Solution. Centrifuge at
Gel and PCR Clean-Up 16,000 × g for 5 minutes.
System recommends
spinning down the mini- 15. Empty the Collection Tube, place the open column in a stand on the lab
column for one minute bench to evaporate the ethanol. There should be no longer an odor of the
to help with ethanol Column Wash buffer.
evaporation. We elimi-
nated this direction from
16. Carefully transfer Minicolumn to a clean 1.5ml microcentrifuge tube.
Step 15 because of 17. Add 50µl of Nuclease-Free Water to the Minicolumn. Incubate at room
safety concerns. temperature for 1 minute. Centrifuge at 16,000 × g for 1 minute.
Instructors should use
their discretion about 18. Discard Minicolumn and store DNA at 4°C or –20°C.
recommending this pro-
cedure for students. 2.C. Ligating the Insert into the Vector

Determining the Vector:Insert Ratio


Note: To estimate DNA After the insert DNA has been prepared for ligation, estimate the concentration by
concentration, students comparing the staining intensity with that of DNA molecular weight standards of
should prepare a sec-
known concentrations on an ethidium bromide-stained agarose gel. If the vector
ond gel and load it with
DNA concentration is unknown, estimate the vector concentration by the same
10µl of the digests and
500ng of Lambda Hind method. Test various vector:insert DNA ratios to determine the optimal ratio for a
IIIDNA markers to esti- particular vector and insert. In most cases, either a 1:1 or a 1:3 molar ratio of vec-
mate the concentration. tor:insert works well. The following example illustrates the calculation of the amount
Alternatively this can be of insert required at a specific molar ratio of vector.
done using a spectrom-
eter if one is available. [ng of vector × size of insert (in kb)] ÷ size of vector (in kb) × molar amount of
(insert ÷ vector) = ng of insert

Example: How much 500bp insert DNA needs to be added to 100ng of 3.0kb vector
in a ligation reaction for a desired vector:insert ratio of 1:3?

[(100ng vector × 0.5kb insert) ÷ 3.0kb vector] × (3 ÷ 1) = 50ng insert

1. Briefly centrifuge the pGEM®-4Z Vector and the DNA insert tubes to collect
contents at the bottom of the tube. (Note: Detailed information about the
vector is provided in Technical Bulletin #TB033, available at:
www.promega.com/tbs .)
2. Set up ligation reactions as described below. Vortex the T4 DNA Ligase 10X
Buffer vigorously before each use. Use 0.5ml tubes known to have low DNA-
binding capacity.

Component Standard Reaction Negative Control


T4 DNA Ligase 10X Buffer 1µl 1µl
Vector DNA 50ng (Xµl) 50ng (Xµl)
Insert DNA Xng (Xµl) None
T4 DNA Ligase
(3 Weiss units/µl) 1µl 1µl
Nuclease-Free Water to a
volume of 10µl 10µl

! Note: If digest yields are low, it may be necessary to increase the overall
volume of the reaction. Remember to maintain rations of volume is
increased.

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
IM006 Printed in USA.
Page 6 3/10
2.C. Ligating the Insert into the Vector (continued)

3. Mix the reactions by pipetting. Incubate the reactions for 1 hour at room
temperature. Alternatively, incubate the reactions overnight at 4°C for the
maximum number of transformants.
Note to the Instructor: Because the target vector was cut with two different
enzymes that do not generate compatible ends, the vector should not spon-
taneously religate. You might discuss with the students what precautions
they would have to take if the enzymes produced “compatible ends” or if
they were only cutting the vector with a single enzyme (i.e., removing phos-
phate groups from the end of the vector so that the ligation reaction could
not be catalyzed between the two ends).

2.D. Transforming Bacteria with Your Clone

Materials Required

• Single-Step KRX Competent Cells (Cat.# L3002; three tubes per lab group)
• vector with ligated insert
• uncut vector positive transformation control
• cut vector negative transformation control
• 17 × 100mm polypropylene tubes (BD Falcon Cat.# 352059) or
1.5ml microcentrifuge tubes
• ice bath
• 42°C water bath
• 37°C shaking water bath or incubator
• pipettors (0.5–10µl and 10–200µl) and appropriate sterile pipet tips
• LB/ampicillin/IPTG/X-Gal plates
• SOC medium
• glass “hockey stick” for plating cells on selective plates

1. Prepare LB/ampicillin/IPTG/X-Gal plates (see Section ).


2. Centrifuge the ligation reactions briefly.
3. Place the high-efficiency Single-Step KRX Competent Cells in an ice bath
until just thawed (5 minutes). Mix cells by gently flicking the tube.
4. Add the 2µl of the ligation reaction to one tube of thawed cells. Add 0.1ng of
uncut plasmid to a second tube of thawed cells for the positive control tube.
Add 0.1ng of cut plasmid to a third tube of thawed cells for the negative con-
trol. Gently flick the tubes, and incubate on ice for 5 minutes.
5. Heat-shock the cells for 15–20 seconds in a water bath at exactly 42°C. DO
NOT SHAKE. Immediately return the tubes to ice for 2 minutes.
6. Add 950µl of room temperature SOC medium to the ligation reaction trans-
formations and 900µl to the tranformation control tube. Incubate for
1.5 hours at 37°C with shaking (~150rpm).
7. Plate 100µl of each transformation culture onto duplicate
LB/ampicillin/IPTG/X-Gal plates. For the transformation control,
a 1:10 dilution with SOC is recommended prior to plating.
8. Incubate plates overnight at 37°C. Select white colonies.

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
Printed in USA. IM006
7/10 Page 7
2.D. Transforming Bacteria with Your Clone (continued)

Calculation of Transformation Efficiency

For every transformation with competent cells, we recommend performing a transfor-


mation control experiment using a known quantity of a purified, supercoiled plasmid
DNA (e.g., pGEM®-4Z Vector, Cat.# P2161). Calculate the transformation efficiency
as described below.

transformation efficiency (cfu/µg) = (cfu on control plate ÷ ng of supercoiled vector


plated) × (103ng/µg) × final dilution factor

cfu = colony forming units

Example:

A 100µl aliquot of competent cells is transformed with 1ng of supercoiled pGEM®-4Z


Vector DNA. Ten microliters of the transformation reaction (0.1ng total DNA) is
added to 990µl of SOC medium (1:100 dilution). Of that volume (1,000µl), a 100µl
aliquot is plated (1:1,000 final dilution), and 100 colonies are obtained on the plate.
What is the transformation efficiency?

(100cfu ÷ 0.1ng of supercoiled vector plated) × (103ng/µg) × 1,000 = 1 x 109 cfu/µg

Note to the Instructor: If you have your students plate 10µl, 100µl, 500µl of the
uncut positive transformation control, they can practice calculating the transforma-
tion frequency for their experiment using the above equation.

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
IM006 Printed in USA.
Page 8 3/10
2.E. Expressing Luciferase in E. coli

• Terrific Broth + ampicillin (100µg/ml) (fresh)


• Luria Broth + ampicillin (100µg/ml) (fresh)
• 20% solution of Rhamnose (L-rhamnose Monohydrate, Cat.# L5701)
• 37°C shaking incubator for liquid culture
• 15–25°C shaking incubator for liquid culture
• Luciferase Assay Reagent (LAR; Cat.# E1483)
• 450µl 100mM sodium citrate (pH 5.5)
• pipettors (0.5–10µl, 10–200µl and 1ml) and appropriate sterile pipet tips

White colonies should have the luciferase gene cloned in the correct orientation in
the pGEM®-4Z Vector to be expressed from the T7 promoter on the vector. Since the
KRX strain of E. coli contains the necessary information to express a gene from the
T7 promoter, your students should be able to see “glowing” cells when the cells are
provided with the appropriate substrates for the luciferase reaction.

1. From your transformation plates, use a sterile innoculating loop to pick four
or five white colonies into indivdual 5ml liquid cultures of LB Broth + Amp
using aseptic technique and grow overnight at 37°C with shaking*. (Seal
your original plates and store them, inverted at 4°C.)
Note: Better growth was observed when culture tubes were incubated at an
angle during overnight shaking.
2. Dilute your overnight cultures 1:100 into new, labeled tubes of Terrific Broth
+ Ampicillin. Grow cultures at 37°C with shaking at 275rpm until they reach
an O.D.600 of 0.8–1.0.
3. Shift cultures to a second incubator shaker set at 15–25°C and continue
shaking until cells reach an O.D.600 of 1.0–1.5.
4. Induce protein expression by adding rhamnose to a concentration of 0.1%.
(1:200 dilution of a 20% rhamnose solution).
5. Grow cultures overnight at 15–25°C with shaking at 275rpm.
6. Transfer 500µl of each your cultures to labeled 1.5ml centrifuge tubes. Pellet
the cells by centrifugation at 10,000 × g for 3 minutes in a microcentrifuge.
7. Aspirate the supernatant and resuspend the cell pellet in 450µl 100mM
sodium citrate + 50µl Luciferase Assay Reagent.
7. Take the tube into a dark room. Vigorously shake the tube to break up the
clumps of cells and to introduce oxygen into the reaction.
8. Are any of the cells in your tubes “glowing”?
Note: The luminescence will be very faint to the naked eye. Comparison to
blank tubes helps with visual dectection of luminescence.

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
Printed in USA. IM006
7/10 Page 9
3. Composition of Buffers and Solutions

IPTG stock solution, 0.1M SOC medium


1.2g IPTG (Cat.# V3955) 2.0g Bacto®-tryptone
Add water to 50ml final volume. Sterilize through a 0.2µm 0.5g Bacto®-yeast extract
filter unit, and store at 4°C for up to 60 days or store in 1ml 1M NaCl
aliquots at –20°C for up to six months. 0.25ml 1M KCl
1ml Mg2+ stock solution, 2M
LB medium with or without antibiotic 1ml 2M glucose, filter-sterilized
10g/L Bacto®-tryptone Add Bacto®-tryptone, Bacto®-yeast extract, NaCl and KCl
5g/L Bacto®-yeast extract to 97ml distilled water. Stir to dissolve. Autoclave, and cool
5g/L NaCl to room temperature. Add sterile 2M Mg2+ stock and 2M
Adjust the pH to 7.5 with NaOH. Autoclave to sterilize. glucose stock, each to a final concentration 20mM. Bring to
Allow the autoclaved medium to cool to 55°C, and add 100ml with distilled water. Filter through a sterile 0.2µm fil-
antibiotic to a final concentration shown in the table below. ter unit.

Antibiotics Useful for Plasmid Selection in KRX. Terrific Broth


Final 12.0g Bacto®-tryptone
Antibiotic Plasmid Marker
Concentration 24.0g Bacto®-yeast extract
4ml glycerol
Ampicillin bla, Ampr 100µg/ml
100ml potassium phosphate, 0.89M
Carbenicillin bla, Ampr 50µg/ml
Add Bacto®-tryptone, Bacto®-yeast extract, glycerol to
Kanamycin Kanr 30µg/ml 750ml distilled water. Stir to dissolve, then bring the vol-
Tetracycline Tetr 12.5µg/ml ume to 900ml with distilled water. Autoclave, and cool to
60ºC. Add 100ml of sterile 0.89M potassium phosphate to a
Chloramphenicol Cmr, Camr 34µg/ml
final volume of 1,000ml. Filter through a sterile 0.2µm unit.
X-Gal
For LB plates, include 15g agar prior to autoclaving. Available from Promega (Cat.# V3941) at a concentration of
50mg/ml in dimethylformamide.
rhamnose, 20% (w/v)
10g L -rhamnose monohydrate
(Cat.# L5701) Note for all filter sterilized solutions: Filter-sterilizing
Add distilled water to 45ml, sterilize through a 0.2µm filter units should be prerinsed with distilled water before use to
unit and store in aliquots at –20°C. remove any toxic material.

sodium citrate

To prepare a sodium citrate solution at pH 5.5 you would


weigh the appropriate amount of trisodium citrate dihy-
drate solid (m.w. 294.12 g/L) depending the desired molar-
ity. Dissolve it in deionized water and titrate the pH to 5.5
using citric acid monohydrate (m.w. 210.14 g/L). Note:
There are 3 types of sodium citrate salts: monosodium cit-
rate, disodium citrate, and trisodium citrate. Disodium cit-
rate and trisodium citrates are commonly used in the lab.

Promega Corporation · 2800 Woods Hollow Road · Madison, WI 53711-5399 USA · Toll Free in USA 800-356-9526 · Telephone 608-274-4330 · Fax 608-277-2516 · www.promega.com
IM006 Printed in USA.
Page 10 7/10

You might also like