Biology AQA Unit 1 AS Level
Biology AQA Unit 1 AS Level
Atomic Structure
Contents
Fundamental Particles
Mass Number & Isotopes
Time of Flight Mass Spectrometry
Shells & Orbitals
Electron Configuration
Ionisation Energy
Ionisation Energy: Trends & Evidence
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Fundamental Particles
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Structure of an Atom
All matter is composed of atoms
Atoms are the smallest parts of an element that can take place in chemical reactions
Atoms are mostly made up of empty space around a very small, dense nucleus that
contains protons and neutrons
Protons and neutrons are sometimes referred to as nucleons because they are found in the nucleus
The nucleus has an overall positive charge
This is because the protons have a positive charge and the neutrons have a neutral charge
Negatively charged electrons are found in orbitals in the empty space around the nucleus
Subatomic Particles
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Subatomic particles are the particles an element is made up of and include protons, neutrons and
electrons
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These subatomic particles are so small that it is not possible to measure their masses and charges
using conventional units (such as grams and coulombs)
Instead, their masses and charges are compared to each other using ‘relative atomic masses’ and
‘relative atomic charges’
These are not actual charges and masses but they are charges and masses of particles relative to each
other
Protons and neutrons have a very similar mass so each is assigned a relative mass of 1 whereas
electrons are 1836 times smaller than a proton and neutron
Protons are positively charged, electrons negatively charged and neutrons are neutral
The relative mass and charge of the subatomic particles are:
Relative mass & charge of subatomic particles table
Proton +1 1
Neutron 0 (neutral) 1
Electron -1 1
1836
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The atomic number is equal to the number of electrons present in a neutral atom of an element
Eg. the atomic number of lithium is 3 which indicates that the neutral lithium atom has 3 protons Your notes
and 3 electrons
The mass number (or nucleon number) is the total number of protons and neutrons in the nucleus of an
atom and has symbol A
The number of neutrons can be calculated by:
Number of neutrons = mass number - atomic number
Protons and neutrons are also called nucleons
The mass (nucleon) and atomic (proton) number are given for each element in the Periodic Table
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The mass of the atom is concentrated in the positively charged nucleus which is attracted to the
negatively charged electrons orbiting around it
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Protons
The atomic number of an atom and ion determines which element it is
Therefore, all atoms and ions of the same element have the same number of protons (atomic number)
in the nucleus
E.g. lithium has an atomic number of 3 (three protons) whereas beryllium has atomic number of 4 (4
protons)
The number of protons equals the atomic (proton) number
The number of protons of an unknown element can be calculated by using its mass number and
number of neutrons:
Mass number = number of protons + number of neutrons
Number of protons = mass number - number of neutrons
Worked Example
Determine the number of protons of the following ions and atoms:
1. Mg2+ ion
2. Carbon atom
3. An unknown atom of element X with mass number 63 and 34 neutrons
Answers:
1. The atomic number of a magnesium atom is 12 indicating that the number of protons in the
magnesium element is 12
Therefore the number of protons in a Mg2+ ion is also 12
2. The atomic number of a carbon atom is 6 indicating that a carbon atom has 6 protons in its
nucleus
3. Use the formula to calculate the number of protons
Number of protons = mass number - number of neutrons
Number of protons = 63 - 34
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Number of protons = 29
Element X is therefore copper
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Electrons
An atom is neutral and therefore has the same number of protons and electrons
Ions have a different number of electrons to their atomic number depending on their charge
A positively charged ion has lost electrons and therefore has fewer electrons than protons
A negatively charged ion has gained electrons and therefore has more electrons than protons
Worked Example
Determine the number of electrons of the following ions and atoms:
1. Mg2+ ion
2. Carbon atom
3. An unknown atom of element X with mass number 63 and 34 neutrons
Answers:
1. The atomic number of a magnesium atom is 12 suggesting that the number of protons in the
neutral magnesium atom is 12
However, the 2+ charge in Mg2+ ion suggests it has lost two electrons
It only has 10 electrons left now
2. The atomic number of a carbon atom is 6 suggesting that the neutral carbon atom has 6
electrons orbiting around the nucleus
3. The number of protons of element X can be calculated by:
Number of protons = mass number - number of neutrons
Number of protons = 63 - 34
Number of protons = 29
The neutral atom of element X therefore also has 29 electrons
Neutrons
The mass and atomic numbers can be used to find the number of neutrons in ions and atoms:
Number of neutrons = mass number (A) - number of protons (Z)
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Worked Example
Determine the number of neutrons of the following ions and atoms: Your notes
1. Mg2+ ion
2. Carbon atom
3. An unknown atom of element X with mass number 63 and 29 protons
Answers:
1. The atomic number of a magnesium atom is 12 and its mass number is 24
Number of neutrons = mass number (A) - number of protons (Z)
Number of neutrons = 24 - 12
Number of neutrons = 12
The Mg2+ ion has 12 neutrons in its nucleus
2. The atomic number of a carbon atom is 6 and its mass number is 12
Number of neutrons = mass number (A) - number of protons (Z)
Number of neutrons = 12 - 6
Number of neutrons = 6
The carbon atom has 6 neutrons in its nucleus
3. The atomic number of an element X atom is 29 and its mass number is 63
Number of neutrons = mass number (A) - number of protons (Z)
Number of neutrons = 63 - 29
Number of neutrons = 34
The neutral atom of element X has 34 neutrons in its nucleus
Isotopes
What are isotopes?
Isotopes are atoms of the same element that contain the same number of protons and electrons but a
different number of neutrons
The symbol for an isotope is the chemical symbol (or word) followed by a dash and then
the mass number
E.g. carbon-12 and carbon-14 are isotopes of carbon containing 6 and 8 neutrons respectively
Isotopes of hydrogen
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Your notes
Chemical properties
Isotopes of the same element display the same chemical characteristics
This is because they have the same number of electrons in their outer shells
Electrons take part in chemical reactions and therefore determine the chemistry of an atom
Physical properties
The only difference between isotopes is the number of neutrons
Since these are neutral subatomic particles, they only add mass to the atom
As a result of this, isotopes have different physical properties such as small differences in their mass
and density
Isotopes are different atoms of the same element that contain the same number of protons and
electrons but a different number of neutrons.
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These are atoms of the same elements but with different mass numbers
Because of this, the mass of an element is given as relative atomic mass (Ar) by using the average
mass of the isotopes Your notes
The relative atomic mass of an element can be calculated by using the relative abundance values
The relative abundance of an isotope is either given or can be read off the mass spectrum
Ar =
( relative abundance isotope 1 × mass isotope 1 ) + relative abundance
(
isotope 2 × mass isotope 2 ) etc
100
Worked Example
Calculating relative atomic mass of oxygen
A sample of oxygen contains the following isotopes:
( 99 . 76 × 16 ) + ( 0. 04 × 17 ) + ( 0. 20 × 18 )
Ar =
100
Ar = 16.0044
Ar = 16.00
Worked Example
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Calculate the relative atomic mass of boron using its mass spectrum, to 1dp: Your notes
Answer:
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Your notes
to form + ions
Stage 1: Ionisation
There are two key ways in which the sample could be ionised:
Electron Impact (or electron ionisation)
Electrospray Ionisation
Electron Impact Ionisation
This method of ionisation is used for elements and substances which have a lower molecular mass
The sample is vaporised and then bombarded with high energy electrons
dable leho
The electrons are 'fired' from an electron gun
The electron gun is a hot wire filament which emits electrons as a current runs through it
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As the sample is bombarded by these electrons, an electron is knocked off each particle, forming a 1+
ion
X (g) → X+ (g) + e- Your notes
is x a metal or non - metal
The 1+ ions which have been formed are called molecular ions, or M+ ions
These are then attracted towards a negatively charged plate
This accelerates them through the mass spectrometer
The molecular ion can be broken down further, or fragmented
The fragments are also accelerated through the sample and hit the detector, causing different
peaks to show on the mass spectrum which is produced
Electrospray Ionisation
This method is used for substances which have a higher molecular mass
Unlike with electron impact ionisation, fragmentation is unlikely to happen
This is often called a soft ionisation technique
For this method, the sample is dissolved in a volatile solvent
The solvent is injected into the mass spectrometer using a hypodermic needle
This produces a fine mist or aerosol
The needle is attached to a high voltage power supply, so as the sample is injected, the particles are
ionised by gaining a proton from the solvent
X (g) + H+ → XH+ (g)
The solvent evaporates and the XH+ ions are attracted towards a negatively charged plate
This accelerates them through the mass spectrometer
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Your notes
Stage 4: Detection
Once they have pass through the mass spectrometer, the 1+ ions will hit a negatively charged
'detector' plate
As they hit this electric plate, they gain an electron
This gaining of an electron discharges the ion, and causes a current to be produced
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This size of the current is proportional to the abundance of those ions hitting the plate and gaining
an electron
The detector plate is connected to a computer, which produces the mass spectrum Your notes
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Subshells
Small PDF
The principal quantum shells are split into subshells which are given the letters s, p and d
Elements with more than 57 electrons also have an f shell
The energy of the electrons in the subshells increases in the order s < p < d
The order of subshells appears to overlap for the higher principal quantum shells as seen in the diagram
below:
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Your notes
Electrons are arranged in principal quantum shells, which are numbered by principal quantum numbers
Orbitals
Subshells contain one or more atomic orbitals
Orbitals exist at specific energy levels and electrons can only be found at these specific levels, not in
between them
Each atomic orbital can be occupied by a maximum of two electrons
This means that the number of orbitals in each subshell is as follows:
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p orbital shape
The p orbitals have a dumbbell shape
Every shell has three p orbitals except for the first one (n = 1)
The p orbitals occupy the x, y and z axes and point at right angles to each other, so are oriented
perpendicular to one another
The lobes of the p orbitals become larger and longer with increasing shell number
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Your notes
Representation of orbitals (the dot represents the nucleus of the atom) showing spherical s orbitals (a),
p orbitals containing ‘lobes’ along the x, y and z axis
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Your notes
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The ground state of an atom is achieved by filling the lowest energy subshells first
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Main Energy Sub Number of orbitals Total number of Total number of Your notes
Level (n) Shells in sub-shell electrons in each orbital electrons in main shell
1 s 1 2 2
2 s 1 2 8
p 3 6
3 s 1 2 18
p 3 6
d 5 10
4 s 1 2 32
p 3 6
d 5 10
f 7 14
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Electron Configuration
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Deducing the Electron Configuration
The Periodic Table is split up into four main blocks depending on their electron configuration
Elements can be classified as an s-block element, p-block element and so on, based on the position
of the outermost electron:
s block elements
Have their valence electron(s) in an s orbital
p block elements
Have their valence electron(s) in a p orbital
d block elements
Have their valence electron(s) in a d orbital
f block elements
Have their valence electron(s) in an f orbital
The principal quantum shells increase in energy with increasing principal quantum number
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Your notes
The electron configuration shows the number of electrons occupying a subshell in a specific shell
Writing out the electron configuration tells us how the electrons in an atom or ion are arranged in their
shells, subshells and orbitals
This can be done using the full electron configuration or the shorthand version
The full electron configuration describes the arrangement of all electrons from the 1s subshell up
The shorthand electron configuration includes using the symbol of the nearest preceding noble
gas to account for however many electrons are in that noble gas
Ions are formed when atoms lose or gain electrons
Negative ions are formed by adding electrons to the outer subshell
Positive ions are formed by removing electrons from the outer subshell
The transition metals fill the 4s subshell before the 3d subshell but lose electrons from the 4s first
and not from the 3d subshell (the 4s subshell is lower in energy
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Worked Example
Write down the full and shorthand electron configuration of the following elements:
1. Calcium
2. Gallium
3. Mg2+
Answer 1:
Calcium has has 20 electrons so the full electronic configuration is:
1s2 2s2 2p6 3s2 3p6 4s2
The 4s orbital is lower in energy than the 3d subshell and is therefore filled first
The shorthand version is [Ar] 4s2 since argon is the nearest preceding noble gas to calcium
which accounts for 18 electrons
Answer 2:
Gallium has 31 electrons so the full electronic configuration is:
1s2 2s2 2p6 3s2 3p6 3d10 4s2 4p1
The shorthand electronic configuration is:
[Ar] 3d10 4s2 4p1
Even though the 4s is filled first, the full electron configuration is often written in numerical order.
So, if there are electrons in the 3d sub-shell, then these will be written before the 4s
Answer 3:
A magnesium atom has 12 electrons so its electronic configuration would be
1s2 2s2 2p6 3s2
To form a magnesium ion, it loses its two outer electrons so the electronic configuration for the
ion is:
1s2 2s2 2p6
Using the shorthand, the electronic configuration is:
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[Ne]
Chromium and copper have the following electron configurations, which are different to what you may
expect:
Cr is [Ar] 3d5 4s1 not [Ar] 3d4 4s2
Cu is [Ar] 3d10 4s1 not [Ar] 3d9 4s2
This is because the [Ar] 3d5 4s1 and [Ar] 3d10 4s1 configurations are energetically stable
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Your notes
The electrons in titanium are arranged in their orbitals as shown. Electrons occupy the lowest energy
levels first before filling those with higher energy
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Ionisation Energy
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What is Ionisation Energy?
The Ionisation Energy (IE) of an element is the amount of energy required to remove one mole of
electrons from one mole of gaseous atoms of an element to form one mole of gaseous ions
Ionisation energies are measured under standard conditions which are 298 K and 101 kPa
The units of IE are kilojoules per mole (kJ mol-1)
The first ionisation energy (IE1) is the energy required to remove one mole of electrons from one mole
of atoms of an element to form one mole of 1+ ions
E.g. the first ionisation energy of gaseous calcium:
Ca(g) → Ca+ (g) + e- IE1 = +590 kJ mol-1
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Your notes
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There is a slight decrease in IE1 between nitrogen and oxygen due to spin-pair repulsion in the 2px
orbital of oxygen
Your notes
Nitrogen has a first ionisation energy of 1400 kJ mol-1 as its electron configuration is 1s2 2s2 2px1
2py1 2pz1
Oxygen has a first ionisation energy of 1310 kJ mol-1 as its electron configuration is 1s2 2s2 2px2 2py1
2pz1
In oxygen, there are 2 electrons in the 2px orbital, so the repulsion between those electrons makes
it slightly easier for one of those electrons to be removed
From one period to the next
There is a large decrease in ionisation energy between the last element in one period, and the first
element in the next period
This is because:
There is increased distance between the nucleus and the outer electrons as you have added a new
shell
There is increased shielding by inner electrons because of the added shell
These two factors outweigh the increased nuclear charge
Ionisation Energy Trends across a Period & going down a Group Table
Across a period: Ionisation energy increases Down a group: Ionisation energy decreases
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The outer electron is held more tightly to the The outer electron is held less tightly to the nucleus
nucleus so it requires more energy to remove so it requires less energy to remove
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Your notes
The first electron removed has a low IE1 as it is easily removed from the atom due to the spin-pair
repulsion of the electrons in the 4s orbital
The second electron is more difficult to remove than the first electron as there is no spin-pair repulsion
The third electron is much more difficult to remove than the second one corresponding to the fact that
the third electron is in a principal quantum shell which is closer to the nucleus (3p)
Removal of the fourth electron is more difficult as the orbital is no longer full, and there is less spin-pair
repulsion
The graph shows there is a large increase in successive ionisation energy as the electrons are being
removed from an increasingly positive ion
The big jumps on the graph show the change of shell and the small jumps are the change of subshell
nuclear charge.
Be careful with interpreting successive ionisation energy graphs, especially if you are not given Your notes
every successive ionisation energy and are just shown part of the graph - you should count the
electrons from left to right!
It is a good idea to label the shells and subshells on ionisation energy graphs in an exam so that you
do not make the mistake of reading the graph backwards.
Sodium
For sodium, there is a huge jump from the first to the second ionisation energy, indicating that it is
much easier to remove the first electron than the second
Therefore, the first electron to be removed must be the last electron in the valence shell thus Na
belongs to group I
The large jump corresponds to moving from the 3s to the full 2p subshell
Na 1s2 2s2 2p6 3s1
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Magnesium
There is a huge increase from the second to the third ionisation energy, indicating that it is far easier to Your notes
remove the first two electrons than the third
Therefore the valence shell must contain only two electrons indicating that magnesium belongs to
group II
The large jump corresponds to moving from the 3s to the full 2p subshell
Mg 1s2 2s2 2p6 3s2
Aluminium
There is a huge increase from the third to the fourth ionisation energy, indicating that it is far easier to
remove the first three electrons than the fourth
The 3p electron and 3s electrons are relatively easy to remove compared with the 2p electrons which
are located closer to the nucleus and experience greater nuclear charge
The large jump corresponds to moving from the third shell to the second shell
Al 1s2 2s2 2p6 3s2 3p1
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