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Mbo 004131589 SD 2

This document summarizes metadata from a dataset of anaerobic bacteria, including the strain name, genus/species, source location and date, and references. It provides sequencing details from an Ion Torrent PGM sequencer including read type, length, number of reads, and total yield for 5 samples of Clostridium and Ruminococcus bacteria isolated from faeces in Melbourne, Australia in December.

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Kelvin Leong
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44 views2 pages

Mbo 004131589 SD 2

This document summarizes metadata from a dataset of anaerobic bacteria, including the strain name, genus/species, source location and date, and references. It provides sequencing details from an Ion Torrent PGM sequencer including read type, length, number of reads, and total yield for 5 samples of Clostridium and Ruminococcus bacteria isolated from faeces in Melbourne, Australia in December.

Uploaded by

Kelvin Leong
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
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Download as XLS, PDF, TXT or read online on Scribd
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Dataset S2. Anaerobic bacteria metadata.

Strain name Genus/species Source Reference


MLG055 Clostridium spp Faeces, Melbourne, AUSTRALIA, December 19 1, 2
MLG080-3 Ruminococcus sp Faeces, Melbourne, AUSTRALIA, December 20 2, 3
MLG392 Clostridium hathewayi Faeces, Melbourne, AUSTRALIA, December 20 2, 3
MLG480 Clostridium spp Faeces, Melbourne, AUSTRALIA, December 20 2, 3
MLG856-1 Clostridium hathewayi Faeces, Melbourne, AUSTRALIA, December 20 2, 3

1 Stinear TP, Olden DC, Johnson PD, Davies JK, Grayson ML. Enterococcal vanB resistance locus in anae
2 Ballard SA, Pertile KK, Lim M, Johnson PD, Grayson ML. Molecular characterization of vanB elements in
3 Ballard SA, Grabsch EA, Johnson PD, Grayson ML. Comparison of three PCR primer sets for identificatio
carriage of vancomycin-resistant enterococci: interference by vanB-containing anaerobic bacilli. Antimicro
Seq platform Read type Read Length No. of reads Total Yield (Mb) Filename
Ion Torrent PGM single ~100 705583 63 MLG055
Ion Torrent PGM single ~100 1802365 183 MLG080
Ion Torrent PGM single ~100 2758637 289 MLG392
Ion Torrent PGM single ~100 3336855 331 MLG480
Ion Torrent PGM single ~100 1285258 110 MLG856

B resistance locus in anaerobic bacteria in human faeces. Lancet. 2001


ation of vanB elements in naturally occurring gut anaerobes. Antimicrob Agents Chem
primer sets for identification of vanB gene carriage in feces and correlation with
anaerobic bacilli. Antimicrob Agents Chemother. 2005 Jan;49(1):77-81.

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