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Pull requests: nf-core/funcscan

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Pull requests list

Update docs + database params, skip hmmsearch
#391 by jasmezz was merged Jul 4, 2024 Loading…
5 of 10 tasks
44
Workflow diagram update for 2.0
#388 by jfy133 was merged Jul 1, 2024 Loading…
10 tasks
3
Update abricate to allow custom databases
#387 by jfy133 was merged Jun 21, 2024 Loading…
10 tasks
6
Update deepbgc/pipeline
#386 by jasmezz was merged Jun 21, 2024 Loading…
1 of 10 tasks
22
Deprecate AMPCOMBI and add AMPCOMBI2
#384 by Darcy220606 was merged Jun 12, 2024 Loading…
7 of 10 tasks
49
Filter bgc fastas
#382 by jfy133 was merged Jun 4, 2024 Loading…
10 tasks
28
Strip original contig splitting approach and preanno orf attempt3
#381 by jfy133 was merged Jun 3, 2024 Loading…
10 tasks
14
Fix RGI fail
#377 by jfy133 was merged May 16, 2024 Loading…
10 tasks
1
3
Important! Template update for nf-core/tools v2.14.1
#375 by nf-core-bot was merged May 15, 2024 Loading…
5
Important! Template update for nf-core/tools v2.14.0
#374 by nf-core-bot was closed May 9, 2024 Loading…
1
Update nf-core subworkflow
#372 by jasmezz was merged May 3, 2024 Loading…
2 of 10 tasks
1
Fix param arg_amrfinderplus_name
#371 by m3hdad was merged May 3, 2024 Loading…
2 of 10 tasks
3
Fix param arg_amrfinderplus_name
#369 by m3hdad was closed May 3, 2024 Loading…
3 of 10 tasks
4
Fix param arg_amrfinderplus_name
#368 by jasmezz was closed May 2, 2024 Loading…
2 of 10 tasks
2
Add nf-test
#366 by jfy133 was merged Jul 12, 2024 Loading…
10 tasks
56
Fix AMRFinderPlus database
#365 by jasmezz was merged Apr 25, 2024 Loading…
5 of 10 tasks
5
Fix deepbgc docs
#363 by jasmezz was merged Apr 24, 2024 Loading…
4 of 10 tasks
2
Update publishDir of bakta
#362 by jasmezz was merged Apr 24, 2024 Loading…
5 of 10 tasks
1
Contig separation
#361 by jfy133 was merged Apr 17, 2024 Loading…
19
Improve RGI database handling
#359 by jasmezz was merged Apr 10, 2024 Loading…
5 of 10 tasks
7
Version bump AMPlify
#358 by jasmezz was merged Apr 5, 2024 Loading…
3 of 10 tasks
2
Add taxonomy in workflow diagram
#353 by Darcy220606 was closed Apr 17, 2024 Loading…
1 of 10 tasks
8
init
#352 by ayushkamat was closed Mar 29, 2024 Loading…
10 tasks
2
Big modules update
#351 by jasmezz was merged Mar 28, 2024 Loading…
4 of 10 tasks
2.0 - Brazilian Escondidinho
12
Post-patch release dev update
#350 by jasmezz was merged Mar 21, 2024 Loading…
1 of 10 tasks
1
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