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Pull requests: nf-core/funcscan

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Pull requests list

delete all TODOs where possible
#195 by louperelo was merged Jan 27, 2023 Loading…
9 tasks
update output.md and usage.md
#194 by louperelo was merged Jan 27, 2023 Loading…
9 tasks
Allow pipeline to run when no conda scope specified
#193 by jfy133 was merged Jan 26, 2023 Loading…
9 tasks
Change default to prokka except for tests
#191 by jfy133 was merged Jan 23, 2023 Loading…
9 tasks
Update ampcombi module
#190 by Darcy220606 was merged Jan 23, 2023 Loading…
4 tasks done
Add comBGC
#188 by jasmezz was merged Jan 25, 2023 Loading…
5 of 9 tasks
fix documentation links in schema help message
#187 by louperelo was merged Jan 19, 2023 Loading…
9 tasks
Deactivate DeepARG testing
#185 by jfy133 was merged Jan 18, 2023 Loading…
9 tasks
Documentation review
#184 by louperelo was merged Jan 18, 2023 Loading…
7 tasks
Update comBGC branch to latest dev
#183 by jasmezz was merged Jan 10, 2023 Loading…
1 of 9 tasks
Start post-draft tweaks to param docs
#182 by jfy133 was merged Jan 18, 2023 Loading…
Update antismash lite and remove need for enable_conda
#181 by jfy133 was merged Jan 12, 2023 Loading…
1 of 9 tasks
Add relevant parameters for BAKTA
#180 by Darcy220606 was merged Jan 18, 2023 Loading…
Add relevant parametrs for prokka
#178 by Darcy220606 was merged Dec 22, 2022 Loading…
Add relevant parametrs for prodigal
#177 by Darcy220606 was merged Dec 22, 2022 Loading…
Add relevant parametrs for ABRicate
#176 by Darcy220606 was merged Dec 21, 2022 Loading…
Important! Template update for nf-core/tools v2.7.2
#175 by nf-core-bot was merged Dec 21, 2022 Loading…
Add relevant parametrs for RGI
#174 by Darcy220606 was merged Dec 21, 2022 Loading…
[skip ci] Add more parametrs to fargene enhancement Improvement for existing functionality
#172 by Darcy220606 was merged Dec 21, 2022 Loading…
Fulltest: fix path to sample sheet
#170 by louperelo was merged Dec 14, 2022 Loading…
9 tasks
Add relevant params: amrfinderplus enhancement Improvement for existing functionality
#169 by Darcy220606 was merged Dec 21, 2022 Loading…
Fulltest
#168 by louperelo was merged Dec 14, 2022 Loading…
9 tasks
Add more relevant parametrs in deepbgc
#166 by Darcy220606 was merged Dec 21, 2022 Loading…
Add more gecco parametrs
#165 by Darcy220606 was merged Dec 21, 2022 Loading…
9 tasks
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