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Pull requests: nf-core/funcscan

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Pull requests list

Separate DeepARG tests from others
#91 by jfy133 was merged Jul 27, 2022 Loading…
2 of 10 tasks
1
3
Add abricate/run
#89 by jasmezz was merged Jul 27, 2022 Loading…
8 of 9 tasks
2
Add GECCO
#88 by jasmezz was merged Jul 26, 2022 Loading…
7 of 10 tasks
1
13
Add BGC subworkflow and antiSMASH
#86 by jasmezz was merged Jul 22, 2022 Loading…
8 of 10 tasks
1
27
arg.nf: hamronization amrfinder substitute hardcoded version numbers with variables enhancement Improvement for existing functionality
#85 by louperelo was merged Jul 21, 2022 Loading…
10 tasks
@louperelo
2
Allow user defined database version for DeepARG
#84 by jfy133 was merged Jul 21, 2022 Loading…
10 tasks
5
Fix dev branch
#83 by jasmezz was closed Jul 20, 2022 Loading…
4 of 10 tasks
Deeparg db version
#82 by jfy133 was closed Jul 20, 2022 Loading…
10 tasks
1
Proof of concept version emission for hAMRonization
#81 by jfy133 was merged Jul 21, 2022 Loading…
10 tasks
1
include amrfinder in arg_screening enhancement Improvement for existing functionality
#79 by louperelo was merged Jul 20, 2022 Loading…
1 task
@louperelo
10
update parameter schema documentation Improvements or additions to documentation
#78 by louperelo was merged Jul 13, 2022 Loading…
10 tasks
@louperelo
31
Update USAGE Docs, main README, and reorder citations
#77 by jfy133 was merged Jul 13, 2022 Loading…
8 of 10 tasks
1
13
add rgi output to hamronization
#76 by louperelo was merged Jul 1, 2022 Loading…
2 of 9 tasks
5
Add AMPIR to the pipeline
#75 by jfy133 was merged Jul 1, 2022 Loading…
4 of 10 tasks
1
7
Fix for amp workflow crashing if skipping hmmsearch
#74 by jfy133 was merged Jul 1, 2022 Loading…
2 of 10 tasks
2
Add prodigal new
#73 by jfy133 was merged Jun 29, 2022 Loading…
10 tasks
2
Start adding aMPIR
#72 by jfy133 was closed Jul 1, 2022 • Draft
10 tasks
1
2
add RGI to arg.nf enhancement Improvement for existing functionality
#68 by louperelo was merged Jun 29, 2022 Loading…
5
Save harmonization in subdirectories
#62 by jfy133 was merged Jun 9, 2022 Loading…
10 tasks
1
Add antiSMASH
#61 by jasmezz was merged Jul 20, 2022 Loading…
3 of 10 tasks
1
17
Add support for multiple fARGene classes and restructure output
#60 by jfy133 was merged Jun 8, 2022 Loading…
10 tasks
1
6
Add prodigal (new attempt)
#59 by Darcy220606 was merged Jun 29, 2022 Loading…
6 of 8 tasks
19
Reduce MultiQC to just reporting versions
#58 by jfy133 was merged Jun 30, 2022 Loading…
3 of 10 tasks
7
Fix subworkflow input channel when skipping deepARG
#55 by jfy133 was merged May 24, 2022 Loading…
10 tasks
4
Important! Template update for nf-core/tools v2.4
#54 by nf-core-bot was merged Jun 1, 2022 Loading…
2
ProTip! Exclude everything labeled bug with -label:bug.