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Pull requests: nf-core/funcscan

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Pull requests list

Add prodigal to the pipeline
#51 by Darcy220606 was closed Jun 1, 2022 Draft
3 of 8 tasks
Complete clean up for HMMSearch section of ampworkflow
#50 by jfy133 was merged Apr 14, 2022 Loading…
3 of 10 tasks
Add hmmsearch for AMP screening
#49 by jfy133 was merged Apr 13, 2022 Loading…
10 tasks
Workflow diagram
#48 by Darcy220606 was closed Apr 5, 2022 Loading…
10 tasks
Refactor to subworkflows
#46 by jfy133 was merged Apr 1, 2022 Loading…
10 tasks
Important! Template update for nf-core/tools v2.3.2
#43 by nf-core-bot was merged Mar 24, 2022 Loading…
Important! Template update for nf-core/tools v2.3.1
#41 by nf-core-bot was merged Mar 23, 2022 Loading…
Optional modules
#40 by jfy133 was merged Mar 24, 2022 Loading…
10 tasks
Workflow diagram
#39 by Darcy220606 was merged Mar 21, 2022 Loading…
funcscan output.md first version documentation Improvements or additions to documentation
#38 by louperelo was merged Mar 23, 2022 Loading…
9 tasks
Workflow_diagram_metro_style documentation Improvements or additions to documentation
#37 by Darcy220606 was closed Aug 10, 2022 Loading…
Funcscan_workflow_diagram_draft1 documentation Improvements or additions to documentation
#36 by Darcy220606 was merged Mar 17, 2022 Loading…
Syncing
#35 by jfy133 was merged Mar 17, 2022 Loading…
10 tasks
Install fixed DeepARG module for running with containers
#34 by jfy133 was merged Mar 23, 2022 Loading…
10 tasks
Important! Template update for nf-core/tools v2.3
#29 by nf-core-bot was merged Mar 17, 2022 Loading…
Add hamroinzation reporting
#26 by jfy133 was merged Mar 17, 2022 Loading…
10 tasks
feat: provide PoC on merging prediction outputs WIP Work in progress
#25 by Midnighter was closed Oct 5, 2022 Draft
Added test data
#21 by jasmezz was merged Feb 23, 2022 Loading…
1 of 10 tasks
Logo switching
#20 by Darcy220606 was merged Feb 9, 2022 Loading…
Add deeparg (no docs!)
#16 by jfy133 was merged Feb 23, 2022 Loading…
3 of 10 tasks
Add funcscan logo to the pipeline
#15 by Darcy220606 was merged Feb 9, 2022 Loading…
Add Macrel module to the pipeline
#14 by Darcy220606 was merged Feb 9, 2022 Loading…
Updated schema
#2 by jasmezz was merged Dec 15, 2021 Loading…
10 tasks
Manual template merge
#1 by jfy133 was merged Dec 15, 2021 Loading…
10 tasks
ProTip! Updated in the last three days: updated:>2025-11-08.