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Pull requests: nf-core/funcscan

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Pull requests list

Manual template merge
#1 by jfy133 was merged Dec 15, 2021 Loading… updated Dec 15, 2021
10 tasks
6
Updated schema
#2 by jasmezz was merged Dec 15, 2021 Loading… updated Dec 15, 2021
10 tasks
1
Add funcscan logo to the pipeline
#15 by Darcy220606 was merged Feb 9, 2022 Loading… updated Feb 9, 2022
1
2
Add Macrel module to the pipeline
#14 by Darcy220606 was merged Feb 9, 2022 Loading… updated Feb 9, 2022
1
10
Add deeparg (no docs!)
#16 by jfy133 was merged Feb 23, 2022 Loading… updated Feb 23, 2022
3 of 10 tasks
1
6
Added test data
#21 by jasmezz was merged Feb 23, 2022 Loading… updated Feb 23, 2022
1 of 10 tasks
2
Syncing
#35 by jfy133 was merged Mar 17, 2022 Loading… updated Mar 17, 2022
10 tasks
Funcscan_workflow_diagram_draft1 documentation Improvements or additions to documentation
#36 by Darcy220606 was merged Mar 17, 2022 Loading… updated Mar 17, 2022
2
Workflow diagram
#39 by Darcy220606 was merged Mar 21, 2022 Loading… updated Mar 21, 2022
1
Install fixed DeepARG module for running with containers
#34 by jfy133 was merged Mar 23, 2022 Loading… updated Mar 23, 2022
10 tasks
9
funcscan output.md first version documentation Improvements or additions to documentation
#38 by louperelo was merged Mar 23, 2022 Loading… updated Mar 23, 2022
9 tasks
9
Important! Template update for nf-core/tools v2.3.1
#41 by nf-core-bot was merged Mar 23, 2022 Loading… updated Mar 23, 2022
Optional modules
#40 by jfy133 was merged Mar 24, 2022 Loading… updated Mar 24, 2022
10 tasks
5
Important! Template update for nf-core/tools v2.3
#29 by nf-core-bot was merged Mar 17, 2022 Loading… updated Mar 30, 2022
7
Important! Template update for nf-core/tools v2.3.2
#43 by nf-core-bot was merged Mar 24, 2022 Loading… updated Mar 30, 2022
1
Add hamroinzation reporting
#26 by jfy133 was merged Mar 17, 2022 Loading… updated Mar 30, 2022
10 tasks
1
6
Refactor to subworkflows
#46 by jfy133 was merged Apr 1, 2022 Loading… updated Apr 1, 2022
10 tasks
1
28
Workflow diagram
#48 by Darcy220606 was closed Apr 5, 2022 Loading… updated Apr 5, 2022
10 tasks
Complete clean up for HMMSearch section of ampworkflow
#50 by jfy133 was merged Apr 14, 2022 Loading… updated Apr 14, 2022
3 of 10 tasks
4
Add hmmsearch for AMP screening
#49 by jfy133 was merged Apr 13, 2022 Loading… updated Apr 16, 2022
10 tasks
1
17
first commit (draft) add amplify enhancement Improvement for existing functionality
#53 by louperelo was merged Apr 27, 2022 Loading… updated Apr 27, 2022
4 of 10 tasks
1
13
Fix subworkflow input channel when skipping deepARG
#55 by jfy133 was merged May 24, 2022 Loading… updated May 24, 2022
10 tasks
4
Important! Template update for nf-core/tools v2.4
#54 by nf-core-bot was merged Jun 1, 2022 Loading… updated Jun 1, 2022
2
Add support for multiple fARGene classes and restructure output
#60 by jfy133 was merged Jun 8, 2022 Loading… updated Jun 8, 2022
10 tasks
1
6
Save harmonization in subdirectories
#62 by jfy133 was merged Jun 9, 2022 Loading… updated Jun 9, 2022
10 tasks
1
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