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Commits on Jun 3, 2020

• fix bug shift node after collapsing for internal constraints

  

  Thu-Hien To

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• Merge pull request #29 from bqminh/master

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Commits on May 31, 2020

• Merge branch 'master' of https://github.com/tothuhien/lsd2

  bqminh

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• add quote around CI_height and CI_date values so that nexus file is readable in FigTree

  bqminh

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Commits on May 29, 2020

• some typos in messages

  

  Thu-Hien To

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Commits on May 27, 2020

• fix bugs estimating root for outgroups, keep outgroups by default, combine option -a, -z with -d

  

  Thu-Hien To

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Commits on May 13, 2020

• Edit README

  

  Thu-Hien To

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• set temporal constraints and variance by default

  

  Thu-Hien To

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• fix bug set minblen=-1 in relative date case, and do not remove outgroup

  

  Thu-Hien To

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Commits on May 7, 2020

• edit verion, some small stuffs

  

  Thu-Hien To

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• edit README

  

  Thu-Hien To

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• edit README

  

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Commits on May 6, 2020

• missing node labels when removing ougroups

  

  Thu-Hien To

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• fix bug missing label nodes when reroot

  

  Thu-Hien To

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• mix date format YY-MM-DD or YY-MM or YY

  

  Thu-Hien To

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• flexible date format YY-MM-DD or YY-MM or YY

  

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Commits on May 5, 2020

• allow not collapse branches, improve nexus format

  

  Thu-Hien To

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• R-wrapper for lsd2 in README file

  

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Commits on Apr 26, 2020

• remove binary file

  

  Thu-Hien To

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• stop when outgroups do not form a monophyletic

  

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Commits on Apr 16, 2020

• read date format year-month-date for options -a and -z

  

  Thu-Hien To

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Commits on Apr 13, 2020

• keep only positive median rate

  

  Thu-Hien To

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• Merge pull request #24 from bqminh/master

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  tothuhien

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• solve conflicts and merge with upstream

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Commits on Apr 12, 2020

• Fix crash when no date file is given

  bqminh

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• fix compile error in windows

  bqminh

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• typo in outlier message

  

  Thu-Hien To

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• reset minimum branch length for v2

  

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• Merge pull request #23 from bqminh/master

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  tothuhien

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• minor issue in getCommandLine

  bqminh

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• Fix issue with re-opening inDate

  bqminh

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• merge with master

  bqminh

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• fix initialisation of InputOutputStream constructor

  bqminh

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Commits on Apr 11, 2020

• when -v 2, reestimate minimum branch length based on rate of the first run

  

  Thu-Hien To

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• edit interface,correct CI format,automatically adjust -m

  

  Thu-Hien To

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