A Translator implementation of a Compressed Sparse Row graph for fast pathfinding

NCATS Biomedical Data Translator Data INGest and Operations WG consolidated data ingest pipeline project.

Repository with code to sketch genomic data with random projection

A performant python data model and centralized utilities for the Translator Reasoner API.

Shepherd is a shared platform for Translator ARA implementation.

This repository computes insertion, deletion, and substitution rates simultaneously under a non-simple mutation model using k-mers

Chris Titus Tech's Windows Utility - Install Programs, Tweaks, Fixes, and Updates

Official Developer Documentation repository for the Biomedical Data Translator

fast, multithreaded sourmash operations: search, compare, and gather.

This repo is created for hosting a pipeline for automatically training xDTD model.

Sparse multi-dimensional arrays for the PyData ecosystem

genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity…

A resource of adverse drug effects extracted from FDA structured product labels

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)

Support for "statistics of k-mers from a sequence undergoing a simple mutation process without spurious matches"

Scripts to download genomes from the NCBI FTP servers

The core algorithm for the Koslicki & Novak JMB paper (2018)

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

OPAL: Open-community Profiling Assessment tooL

Clone github repositories of a user / organization

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Keras implementation of RetinaNet object detection.

MARISA: Matching Algorithm with Recursively Implemented StorAge