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Pull requests list

SSR Annotation Handling
#101 by alecethell was merged Oct 12, 2022 Loading…
@alecethell
5
Change BLAST word size default to 11, add optional arg in BLAST/PCR API
#100 by alecethell was merged Sep 29, 2022 Loading…
Recombine and SSR now accept empty annotation lists
#99 by rystecher was merged Sep 19, 2022 Loading…
Create SSR UI
#97 by alecethell was merged Sep 9, 2022 Loading…
1
add sequence to feature and option to get in api
#96 by Lioscro was merged Sep 13, 2022 Loading…
@Lioscro
7
return template annotations from pcr
#95 by Lioscro was merged Sep 6, 2022 Loading…
@Lioscro
5
Multithreaded, JSON-output, higher performance BLAST; no default primer design for recombination done through UI
#94 by alecethell was merged Aug 9, 2022 Loading…
@alecethell
3
Support ssr
#93 by benjiec was merged Aug 9, 2022 Loading…
@alecethell
14
Create API for getting coordinates of diff between child and parent genomes
#92 by alecethell was merged Aug 9, 2022 Loading…
@alecethell
12
Patch Reference-based Fasta Export
#91 by alecethell was merged Jul 21, 2022 Loading…
fixed flake8, bumped version to 3.25.1
#90 by alecethell was merged Jul 14, 2022 Loading…
Create Export FASTA API
#89 by alecethell was merged Jul 13, 2022 Loading…
2
Implement reference-based chunks
#87 by alecethell was merged Jul 14, 2022 Loading…
9
Bump django from 2.2.20 to 2.2.28 dependencies Pull requests that update a dependency file
#86 by dependabot bot was closed Feb 7, 2024 Loading…
1
Bump numpy from 1.12.1 to 1.21.0 dependencies Pull requests that update a dependency file
#85 by dependabot bot was closed Jun 21, 2022 Loading…
1
order the fragments when we make genome indicies, to may be avoid dea…
#84 by benjiec was merged Feb 16, 2022 Loading…
1
Bump django from 2.2.20 to 2.2.27 dependencies Pull requests that update a dependency file
#83 by dependabot bot was closed Apr 22, 2022 Loading…
1
None strand GFF import fix
#81 by alecethell was merged Jan 5, 2022 Loading…
1
all annotation types now default to "misc"
#80 by alecethell was merged Dec 13, 2021 Loading…
@benjiec
updated README
#79 by benjiec was merged Dec 10, 2021 Loading…
Bump django from 2.2.20 to 2.2.25 dependencies Pull requests that update a dependency file
#78 by dependabot bot was closed Feb 10, 2022 Loading…
1
further reduce race condition: better fragment locking, moving delaye…
#77 by benjiec was merged Dec 10, 2021 Loading…
add a select_for_update lock
#76 by benjiec was merged Dec 3, 2021 Loading…
5
allow insertion of sequences without deletion via hr
#75 by benjiec was merged Dec 2, 2021 Loading…
7
Improve annotation of integrated DNA and regions around the integration location
#74 by benjiec was merged Nov 15, 2021 Loading…
1
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