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Starred repositories

101 stars written in Python
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Python 8 7 Updated Dec 22, 2016

Shotgun sequencing of text, in CGI script form

Python 7 6 Updated Sep 24, 2024

python script to identify genes that are present on multiple contigs

Python 6 5 Updated Sep 14, 2017

Repeat Aware Performance Evaluation of Scaffolding Tools

Python 6 1 Updated Jul 15, 2018

Simple framework for web services in the Sali lab

Python 5 3 Updated Oct 14, 2025

Stuff to do with HiC data

Python 5 10 Updated Dec 19, 2018

Filter and compare SNPs from multiple VCF files

Python 4 3 Updated Apr 26, 2019

SSR Based Comparitive Genomics API

Python 3 Updated Nov 6, 2025

Scripts and materials needed to reproduce results and figures in the instaGRAAL showcase paper

Python 3 1 Updated Apr 16, 2020

Scaffolding contigs with transcripts

Python 3 3 Updated May 3, 2018

Compare and shuffle heterozygosity using BED and VCF files

Python 2 Updated Jun 7, 2021