OpenGL Powered Pretext Contact Map Viewer

Repository for "Partonomy: Large Multimodal Models with Part-Level Visual Understanding"

ChemFormula is a Python class for working with chemical formulas. It allows parsing chemical formulas, calculating formula weights for stoichiometric calculations, and generating formatted output s…

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

ViPE: Video Pose Engine for Geometric 3D Perception

Official implementation of the paper Locality in Image Diffusion Models Emerges from Data Statistics

Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement

Evaluating genome assemblies

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

End-to-end reference application for AGNTCY Components

Project seeking to localize encoding of the task prior in the brain

Code related to the brainwide map paper

SnapPy is a package for studying the topology and geometry of 3-manifolds, with a focus on hyperbolic structures. It is based on the SnapPea kernel written by Jeff Weeks.

Rembg is a tool to remove images background

Code and experimental data for the paper 'Probing the Preferences of a Language Model' -2025

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

ImageJ Macro to count nuclei and boutons in a directory of fluorescent tiffs.

A collection of tools for characterizing membrane structure and dynamics within simulated trajectories of molecular systems.

Repository containing the EFfective Field theORy surrogaTe

Cutadapt removes adapter sequences from sequencing reads

Code and workflow for high resolution IMC pipeline

DataComp for Language Models

F1: A Vision Language Action Model Bridging Understanding and Generation to Actions

an SPM centric BIDS app