A user interface for cloud based medical image storage

The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.

A Django(backend) & React(frontend) based full-stack real time auction application

Python/R scripts for neural/behavioral data analysis from the Photographer Paradigm

MP2RAGE Scripts - T1 map correction & Background noise removal

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

This an example app that can serve as a template.

A repo of current preprocessing methods for the Cogan Lab

BIDS app to view a dataset content and the events file content

Emits nextflow channels from Brain Imaging Data Structure data.

BIDScoin converts your source-level neuroimaging data to BIDS

Preprocessing of arterial spin labeling (ASL) data

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Rapid and automated conversion of neuroimaging data to BIDS

Reconstruction of preprocessed q-space images (dMRI)