The MATLAB toolbox for MEG, EEG and iEEG analysis
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
SPM (Statistical Parametric Mapping) - Development Version
Public Releases of SPM12 - see https://github.com/spm/spm for the Development Version
MATLAB application for fNIRS data processing and visualization
Automatic Analysis (aa)
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.
Computational Anatomy Toolbox for SPM12 or SPM25
Please use the new version of LiFE: www.github.com/brain-life/encode
A prediction-based extension of network-based statistics.
GNU Octave library for connectivity analysis in large fMRI datasets
An easy to use decoding toolbox for Matlab users.
Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox
Flow-Registration toolbox for 2P motion compensation
Code and data for Zhang, Lengersdorff et al. (2020)
Machine Learning in NeuroImaging (MALINI) is a MATLAB-based toolbox used for feature extraction and disease classification using resting state functional magnetic resonance imaging (rs-fMRI) data. 18 different popular classifiers are presented. With slight modifications, it can also be used for any classification problem using any set of features.
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