{"id":"https://openalex.org/W4400163215","doi":"https://doi.org/10.48550/arxiv.2406.19136","title":"YZS-model: A Predictive Model for Organic Drug Solubility Based on Graph Convolutional Networks and Transformer-Attention","display_name":"YZS-model: A Predictive Model for Organic Drug Solubility Based on Graph Convolutional Networks and Transformer-Attention","publication_year":2024,"publication_date":"2024-06-27","ids":{"openalex":"https://openalex.org/W4400163215","doi":"https://doi.org/10.48550/arxiv.2406.19136"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2406.19136","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2406.19136","pdf_url":"https://arxiv.org/pdf/2406.19136","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2406.19136","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100455048","display_name":"Chenxu Wang","orcid":"https://orcid.org/0000-0002-9539-5046"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Wang, Chenxu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5099703833","display_name":"Haowei Ming","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ming, Haowei","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100598891","display_name":"Jian He","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"He, Jian","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101882874","display_name":"Yao Lu","orcid":"https://orcid.org/0000-0002-3043-6185"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lu, Yao","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Chen, Junhong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen, Junhong","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100455048"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9574999809265137,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9574999809265137,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5448681116104126},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5026540756225586},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.48083409667015076},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.42082110047340393},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2030755579471588},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1466730833053589},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.1458958089351654},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13720130920410156},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.09178999066352844}],"concepts":[{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5448681116104126},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5026540756225586},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.48083409667015076},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.42082110047340393},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2030755579471588},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1466730833053589},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.1458958089351654},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13720130920410156},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.09178999066352844},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2406.19136","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2406.19136","pdf_url":"https://arxiv.org/pdf/2406.19136","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2406.19136","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2406.19136","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2406.19136","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2406.19136","pdf_url":"https://arxiv.org/pdf/2406.19136","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4400163215.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"Accurate":[0],"prediction":[1,46,228],"of":[2,97,126,131,137,141,151,159],"drug":[3,204,230],"molecule":[4],"solubility":[5,200,227],"is":[6],"crucial":[7],"for":[8,226],"therapeutic":[9],"effectiveness":[10],"and":[11,38,61,84,107,115,128,139,181,194,212,229],"safety.":[12],"Traditional":[13],"methods":[14],"often":[15],"miss":[16],"complex":[17,172],"molecular":[18,53,89,109,185],"structures,":[19],"leading":[20],"to":[21,44,167,183],"inaccuracies.":[22],"We":[23],"introduce":[24],"the":[25,57,95,121,165],"YZS-Model,":[26],"a":[27,102],"deep":[28,161,218],"learning":[29,162],"framework":[30],"integrating":[31,85],"Graph":[32],"Convolutional":[33],"Networks":[34],"(GCN),":[35],"Transformer":[36],"architectures,":[37],"Long":[39],"Short-Term":[40],"Memory":[41],"(LSTM)":[42],"networks":[43],"enhance":[45],"precision.":[47],"GCNs":[48],"excel":[49],"at":[50],"capturing":[51,74],"intricate":[52],"topologies":[54],"by":[55,155,206],"modeling":[56],"relationships":[58],"between":[59],"atoms":[60],"bonds.":[62],"Transformers,":[63],"with":[64],"their":[65],"self-attention":[66],"mechanisms,":[67],"effectively":[68],"identify":[69],"long-range":[70],"dependencies":[71,83],"within":[72,88],"molecules,":[73],"global":[75],"interactions.":[76],"LSTMs":[77],"process":[78],"sequential":[79],"data,":[80],"preserving":[81],"long-term":[82],"temporal":[86],"information":[87],"sequences.":[90],"This":[91,187],"multifaceted":[92],"approach":[93],"leverages":[94],"strengths":[96],"each":[98],"component,":[99],"resulting":[100],"in":[101,199,222],"model":[103,195],"that":[104],"comprehensively":[105],"understands":[106],"predicts":[108],"properties.":[110],"Trained":[111],"on":[112,117],"9,943":[113],"compounds":[114],"tested":[116],"an":[118,124,129,144,149],"anticancer":[119],"dataset,":[120],"YZS-Model":[122,166],"achieved":[123],"$R^2$":[125],"0.59":[127],"RMSE":[130,140,150],"0.57,":[132],"outperforming":[133],"benchmark":[134],"models":[135],"($R^2$":[136],"0.52":[138],"0.61).":[142],"In":[143],"independent":[145],"test,":[146],"it":[147],"demonstrated":[148],"1.05,":[152],"improving":[153],"accuracy":[154,193],"45.9%.":[156],"The":[157],"integration":[158],"these":[160],"techniques":[163],"allows":[164],"learn":[168],"valuable":[169],"features":[170],"from":[171],"data":[173],"without":[174],"predefined":[175],"parameters,":[176],"handle":[177],"large":[178],"datasets":[179],"efficiently,":[180],"adapt":[182],"various":[184],"types.":[186],"comprehensive":[188],"capability":[189],"significantly":[190],"improves":[191],"predictive":[192],"generalizability.":[196],"Its":[197],"precision":[198],"predictions":[201],"can":[202],"expedite":[203],"development":[205],"optimizing":[207],"candidate":[208],"selection,":[209],"reducing":[210],"costs,":[211],"enhancing":[213],"efficiency.":[214],"Our":[215],"research":[216],"underscores":[217],"learning's":[219],"transformative":[220],"potential":[221],"pharmaceutical":[223],"science,":[224],"particularly":[225],"design.":[231]},"counts_by_year":[],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2024-06-30T00:00:00"}
