{"id":"https://openalex.org/W2123587359","doi":"https://doi.org/10.1109/cbms.2012.6266328","title":"The ProGenGrid virtual laboratory for bioinformatics","display_name":"The ProGenGrid virtual laboratory for bioinformatics","publication_year":2012,"publication_date":"2012-06-01","ids":{"openalex":"https://openalex.org/W2123587359","doi":"https://doi.org/10.1109/cbms.2012.6266328","mag":"2123587359"},"language":"en","primary_location":{"id":"doi:10.1109/cbms.2012.6266328","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2012.6266328","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 25th IEEE International Symposium on Computer-Based Medical Systems (CBMS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052404540","display_name":"Maria Mirto","orcid":"https://orcid.org/0000-0001-9366-3169"},"institutions":[{"id":"https://openalex.org/I142910587","display_name":"University of Salento","ror":"https://ror.org/03fc1k060","country_code":"IT","type":"education","lineage":["https://openalex.org/I142910587"]},{"id":"https://openalex.org/I4210111827","display_name":"CMCC Foundation - Euro-Mediterranean Center on Climate Change","ror":"https://ror.org/01tf11a61","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210111827"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Maria Mirto","raw_affiliation_strings":["Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce, Lecce, Italy","Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce via per Monteroni 73100, Italy"],"affiliations":[{"raw_affiliation_string":"Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce, Lecce, Italy","institution_ids":["https://openalex.org/I4210111827","https://openalex.org/I142910587"]},{"raw_affiliation_string":"Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce via per Monteroni 73100, Italy","institution_ids":["https://openalex.org/I142910587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068671472","display_name":"Marco Passante","orcid":null},"institutions":[{"id":"https://openalex.org/I4210111827","display_name":"CMCC Foundation - Euro-Mediterranean Center on Climate Change","ror":"https://ror.org/01tf11a61","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210111827"]},{"id":"https://openalex.org/I142910587","display_name":"University of Salento","ror":"https://ror.org/03fc1k060","country_code":"IT","type":"education","lineage":["https://openalex.org/I142910587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Passante","raw_affiliation_strings":["Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce, Lecce, Italy","Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce via per Monteroni 73100, Italy"],"affiliations":[{"raw_affiliation_string":"Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce, Lecce, Italy","institution_ids":["https://openalex.org/I4210111827","https://openalex.org/I142910587"]},{"raw_affiliation_string":"Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce via per Monteroni 73100, Italy","institution_ids":["https://openalex.org/I142910587"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068232148","display_name":"Giovanni Aloisio","orcid":"https://orcid.org/0000-0001-5902-6983"},"institutions":[{"id":"https://openalex.org/I142910587","display_name":"University of Salento","ror":"https://ror.org/03fc1k060","country_code":"IT","type":"education","lineage":["https://openalex.org/I142910587"]},{"id":"https://openalex.org/I4210111827","display_name":"CMCC Foundation - Euro-Mediterranean Center on Climate Change","ror":"https://ror.org/01tf11a61","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210111827"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Aloisio","raw_affiliation_strings":["Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce, Lecce, Italy","Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce via per Monteroni 73100, Italy"],"affiliations":[{"raw_affiliation_string":"Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce, Lecce, Italy","institution_ids":["https://openalex.org/I4210111827","https://openalex.org/I142910587"]},{"raw_affiliation_string":"Euro Mediterranean Center for Climate Change (CMCC), University of Salento, Lecce via per Monteroni 73100, Italy","institution_ids":["https://openalex.org/I142910587"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052404540"],"corresponding_institution_ids":["https://openalex.org/I142910587","https://openalex.org/I4210111827"],"apc_list":null,"apc_paid":null,"fwci":0.3546,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6537728,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"4463","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.904699981212616,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.650152325630188},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3825536072254181},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37819039821624756},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18111932277679443}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.650152325630188},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3825536072254181},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37819039821624756},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18111932277679443}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cbms.2012.6266328","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2012.6266328","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 25th IEEE International Symposium on Computer-Based Medical Systems (CBMS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5299999713897705}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1485092163","https://openalex.org/W1567971565","https://openalex.org/W1660769996","https://openalex.org/W2007692121","https://openalex.org/W2028706992","https://openalex.org/W2058802992","https://openalex.org/W2073536358","https://openalex.org/W2096160662","https://openalex.org/W2099525660","https://openalex.org/W2111996486","https://openalex.org/W2113541044","https://openalex.org/W2113627038","https://openalex.org/W2114583524","https://openalex.org/W2180291491","https://openalex.org/W2336303174","https://openalex.org/W4255988860","https://openalex.org/W6636950004","https://openalex.org/W6684759573"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"A":[0],"virtual":[1,26,89,119],"laboratory":[2,27,120],"(VL)":[3],"is":[4,28,51,58],"an":[5,52,181],"environment":[6],"where":[7,121],"the":[8,35,44,61,74,82,100,137,147,150,170,207,215,224,231,235],"applications":[9],"are":[10,16,38],"available":[11],"as":[12,97],"reusable":[13],"components":[14],"and":[15,54,63,70,109,130,139,142,164,184,191,197],"exploited":[17],"within":[18],"(\u201cin":[19],"silico\u201d)":[20],"experiments.":[21],"The":[22],"purpose":[23],"of":[24,33,43,65,102,149,174,230],"a":[25,55,93,112,118,158,211,219],"to":[29,73,116,217,234,237],"support":[30],"collaborative":[31],"work":[32],"all":[34],"people":[36],"who":[37],"involved":[39],"in":[40,169,194,206],"any":[41],"stage":[42],"experimental":[45],"process.":[46],"Problem":[47],"Solving":[48],"Environment":[49],"(PSE)":[50],"approach":[53],"technology":[56],"that":[57,76],"used":[59],"for":[60,92,152],"definition":[62],"composition":[64],"complex":[66],"applications,":[67],"hiding":[68],"programming":[69],"configuration":[71],"details":[72],"user":[75,236],"can":[77,123],"concentrate":[78],"instead":[79],"only":[80],"on":[81,189,214],"specific":[83,94],"biological":[84,125],"problem.":[85],"PSE":[86],"allows":[87,233],"building":[88],"laboratories":[90],"specialized":[91],"domain,":[95],"such":[96],"bioinformatics.":[98],"At":[99],"University":[101],"Salento,":[103],"we":[104,202],"have":[105,166],"developed":[106],"ProGenGrid":[107,208],"(Proteomics":[108],"Genomics":[110],"Grid),":[111],"system":[113,232],"which":[114],"aims":[115],"provide":[117],"e-scientists":[122],"simulate":[124],"experiments,":[126],"composing":[127],"existing":[128],"analysis":[129],"visualization":[131],"tools,":[132],"monitoring":[133],"their":[134],"execution,":[135],"storing":[136],"intermediate":[138],"final":[140],"output":[141],"finally,":[143],"if":[144],"needed,":[145],"saving":[146],"model":[148],"experiment":[151],"updating":[153,248],"or":[154,247],"reproducing":[155],"it":[156],"at":[157,178],"later":[159],"time.":[160],"Different":[161],"bioinformatics":[162,183],"services":[163],"workflows":[165],"been":[167],"deployed":[168],"LIBI":[171],"(International":[172],"Laboratory":[173],"BioInformatics)":[175],"project,":[176],"aiming":[177],"setting":[179],"up":[180],"advanced":[182],"computational":[185,220],"biology":[186,196],"laboratory,":[187],"focusing":[188],"basic":[190],"applied":[192],"research":[193],"modern":[195],"biotechnologies.":[198],"In":[199],"this":[200],"paper":[201],"present":[203],"recent":[204],"developments":[205],"system,":[209],"with":[210],"special":[212],"focus":[213],"possibility":[216],"configure":[218],"grid":[221,242],"by":[222,244],"using":[223],"workflow":[225],"editor.":[226],"This":[227],"new":[228],"feature":[229],"create":[238],"his/her":[239],"own":[240],"personal":[241],"on-the-fly,":[243],"adding,":[245],"removing,":[246],"its":[249],"computer":[250],"configuration.":[251]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
