{"id":"https://openalex.org/W2997235817","doi":"https://doi.org/10.1186/s12859-019-3263-x","title":"Predicting drug-target interactions from drug structure and protein sequence using novel convolutional neural networks","display_name":"Predicting drug-target interactions from drug structure and protein sequence using novel convolutional neural networks","publication_year":2019,"publication_date":"2019-12-01","ids":{"openalex":"https://openalex.org/W2997235817","doi":"https://doi.org/10.1186/s12859-019-3263-x","mag":"2997235817","pmid":"https://pubmed.ncbi.nlm.nih.gov/31874614"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-019-3263-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3263-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3263-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3263-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101484264","display_name":"Shanshan Hu","orcid":"https://orcid.org/0009-0001-0221-2184"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"ShanShan Hu","raw_affiliation_strings":["School of Computer Science and Technology, Anhui University, Jiulong Road, Hefei, 230601, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Anhui University, Jiulong Road, Hefei, 230601, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100650900","display_name":"Chenglin Zhang","orcid":"https://orcid.org/0000-0003-2843-5033"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenglin Zhang","raw_affiliation_strings":["Institutes of Physical Science and Information Technology, Anhui University, Jiulong Road, Hefei, 230601, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institutes of Physical Science and Information Technology, Anhui University, Jiulong Road, Hefei, 230601, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100629119","display_name":"Peng Chen","orcid":"https://orcid.org/0000-0002-5810-8159"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Chen","raw_affiliation_strings":["Cadre's Ward (South District), The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, China. pchen.ustc10@yahoo.com","Institutes of Physical Science and Information Technology, Anhui University, Jiulong Road, Hefei, 230601, China. pchen.ustc10@yahoo.com","School of Computer Science and Technology, Anhui University, Jiulong Road, Hefei, 230601, China. pchen.ustc10@yahoo.com","Institutes of Physical Science and Information Technology, Anhui University, Jiulong Road, Hefei, 230601, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cadre's Ward (South District), The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, China. pchen.ustc10@yahoo.com","institution_ids":[]},{"raw_affiliation_string":"Institutes of Physical Science and Information Technology, Anhui University, Jiulong Road, Hefei, 230601, China. pchen.ustc10@yahoo.com","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Technology, Anhui University, Jiulong Road, Hefei, 230601, China. pchen.ustc10@yahoo.com","institution_ids":[]},{"raw_affiliation_string":"Institutes of Physical Science and Information Technology, Anhui University, Jiulong Road, Hefei, 230601, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025243616","display_name":"Pengying Gu","orcid":"https://orcid.org/0000-0003-0220-5192"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengying Gu","raw_affiliation_strings":["Cadre's Ward (South District), The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, China. pyGu@ustc.edu.cn","Cadre's Ward (South District), The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cadre's Ward (South District), The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, China. pyGu@ustc.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Cadre's Ward (South District), The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230001, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433179","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-5985-8023"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["School of Electrical and Information Engineering, Anhui University, Hefei, 230601, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Information Engineering, Anhui University, Hefei, 230601, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100382568","display_name":"Bing Wang","orcid":"https://orcid.org/0000-0003-4945-7725"},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bing Wang","raw_affiliation_strings":["School of Electrical and Information Engineering, Anhui University of Technology, Ma'anshan, 243032, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Information Engineering, Anhui University of Technology, Ma'anshan, 243032, China","institution_ids":["https://openalex.org/I92178344"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101484264"],"corresponding_institution_ids":["https://openalex.org/I143868143"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":7.8824,"has_fulltext":true,"cited_by_count":77,"citation_normalized_percentile":{"value":0.97862171,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"20","issue":"S25","first_page":"689","last_page":"689"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.942300021648407,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.942300021648407,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.01979999989271164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.012199999764561653,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.9331976175308228},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.709764838218689},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6428306102752686},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5875435471534729},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5844942331314087},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5511540770530701},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5461824536323547},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5237569808959961},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.5087469220161438},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.5009288787841797},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.4939001202583313},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42749521136283875},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.4113613963127136},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37091851234436035},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34787994623184204},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.319026917219162},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.156294047832489}],"concepts":[{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.9331976175308228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.709764838218689},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6428306102752686},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5875435471534729},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5844942331314087},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5511540770530701},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5461824536323547},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5237569808959961},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.5087469220161438},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.5009288787841797},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.4939001202583313},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42749521136283875},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.4113613963127136},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37091851234436035},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34787994623184204},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.319026917219162},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.156294047832489},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-019-3263-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3263-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3263-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31874614","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31874614","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6ce56a3e89a542708983c2ff762d351e","is_oa":true,"landing_page_url":"https://doaj.org/article/6ce56a3e89a542708983c2ff762d351e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 20, Iss S25, Pp 1-12 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6929541","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6929541","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-019-3263-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-019-3263-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-3263-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320325599","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09"},{"id":"https://openalex.org/F4320337149","display_name":"School of Life Sciences and Biotechnology Division of Life Sciences, Korea University","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2997235817.pdf","grobid_xml":"https://content.openalex.org/works/W2997235817.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W148928213","https://openalex.org/W1605923270","https://openalex.org/W1813117265","https://openalex.org/W2009313526","https://openalex.org/W2014731953","https://openalex.org/W2018408116","https://openalex.org/W2025577942","https://openalex.org/W2044002635","https://openalex.org/W2052611179","https://openalex.org/W2066201825","https://openalex.org/W2080167197","https://openalex.org/W2083042679","https://openalex.org/W2084787613","https://openalex.org/W2093551558","https://openalex.org/W2094397139","https://openalex.org/W2095705004","https://openalex.org/W2100495367","https://openalex.org/W2100672820","https://openalex.org/W2105668062","https://openalex.org/W2106029302","https://openalex.org/W2108704825","https://openalex.org/W2109991441","https://openalex.org/W2136043941","https://openalex.org/W2136922672","https://openalex.org/W2138512826","https://openalex.org/W2139516171","https://openalex.org/W2145955247","https://openalex.org/W2147339185","https://openalex.org/W2152800101","https://openalex.org/W2153838454","https://openalex.org/W2159887157","https://openalex.org/W2162011385","https://openalex.org/W2165674132","https://openalex.org/W2190186811","https://openalex.org/W2200606379","https://openalex.org/W2327924354","https://openalex.org/W2397757171","https://openalex.org/W2470803522","https://openalex.org/W2524012533","https://openalex.org/W2546726420","https://openalex.org/W2553681302","https://openalex.org/W2558825838","https://openalex.org/W2592742128","https://openalex.org/W2594680180","https://openalex.org/W2605952223","https://openalex.org/W2614433385","https://openalex.org/W2614622306","https://openalex.org/W2739876930","https://openalex.org/W2756892287","https://openalex.org/W4205616158","https://openalex.org/W4247110653","https://openalex.org/W4249920046"],"related_works":["https://openalex.org/W4387572939","https://openalex.org/W3114988578","https://openalex.org/W4390649784","https://openalex.org/W4387767168","https://openalex.org/W4390539447","https://openalex.org/W4385514295","https://openalex.org/W2431109715","https://openalex.org/W2797260394","https://openalex.org/W3035455406","https://openalex.org/W2226749982"],"abstract_inverted_index":{"BACKGROUND:":[0],"Accurate":[1],"identification":[2],"of":[3,74,105,113,130,137,143],"potential":[4],"interactions":[5,33],"between":[6],"drugs":[7],"and":[8,40,77,99,110,139,180],"protein":[9,78],"targets":[10],"is":[11],"a":[12,54,186],"critical":[13],"step":[14],"to":[15,36,67,95,125,189],"accelerate":[16],"drug":[17,75],"discovery.":[18],"Despite":[19],"many":[20,43],"relative":[21],"experimental":[22],"researches":[23],"have":[24,46],"been":[25,47],"done":[26],"in":[27,155],"the":[28,72,92,102,128,131,163],"past":[29],"decades,":[30],"detecting":[31],"drug-target":[32,51],"(DTIs)":[34],"remains":[35],"be":[37,183],"extremely":[38],"resource-intensive":[39],"time-consuming.":[41],"Therefore,":[42],"computational":[44,160],"approaches":[45],"developed":[48],"for":[49,101],"predicting":[50],"associations":[52],"on":[53,162],"large":[55],"scale.":[56],"RESULTS:":[57],"In":[58],"this":[59],"paper,":[60],"we":[61],"proposed":[62],"an":[63,135,140],"deep":[64],"learning-based":[65],"method":[66,86],"predict":[68],"DTIs":[69],"only":[70],"using":[71],"information":[73],"structures":[76],"sequences.":[79],"The":[80],"final":[81],"results":[82,168],"showed":[83],"that":[84,149,170],"our":[85,114,150,171],"can":[87,182],"achieve":[88],"good":[89],"performance":[90,154],"with":[91,157],"accuracies":[93],"up":[94],"92.0%,":[96],"90.0%,":[97],"92.0%":[98],"90.7%":[100],"target":[103],"families":[104],"enzymes,":[106],"ion":[107],"channels,":[108],"GPCRs":[109],"nuclear":[111],"receptors":[112],"created":[115],"dataset,":[116],"respectively.":[117],"Another":[118],"dataset":[119],"derived":[120],"from":[121],"DrugBank":[122],"was":[123,147],"used":[124,184],"further":[126],"assess":[127],"generalization":[129],"model,":[132],"which":[133],"yielded":[134],"accuracy":[136],"0.9015":[138],"AUC":[141],"value":[142],"0.9557.":[144],"CONCLUSION:":[145],"It":[146],"elucidated":[148],"model":[151,172],"shows":[152],"improved":[153],"comparison":[156],"other":[158],"state-of-the-art":[159],"methods":[161],"common":[164],"benchmark":[165],"datasets.":[166],"Experimental":[167],"demonstrated":[169],"successfully":[173],"extracted":[174],"more":[175],"nuanced":[176],"yet":[177],"useful":[178],"features,":[179],"therefore":[181],"as":[185],"practical":[187],"tool":[188],"discover":[190],"new":[191],"drugs.":[192],"AVAILABILITY:":[193],"http://deeplearner.ahu.edu.cn/web/CnnDTI.htm.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":8}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
