{"id":"https://openalex.org/W3120388013","doi":"https://doi.org/10.1186/s12859-020-03944-1","title":"PCirc: random forest-based plant circRNA identification software","display_name":"PCirc: random forest-based plant circRNA identification software","publication_year":2021,"publication_date":"2021-01-06","ids":{"openalex":"https://openalex.org/W3120388013","doi":"https://doi.org/10.1186/s12859-020-03944-1","mag":"3120388013","pmid":"https://pubmed.ncbi.nlm.nih.gov/33407069"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03944-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03944-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03944-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03944-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089045426","display_name":"Shuwei Yin","orcid":null},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shuwei Yin","raw_affiliation_strings":["National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087641497","display_name":"Xiao Tian","orcid":"https://orcid.org/0000-0001-5300-3596"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Tian","raw_affiliation_strings":["National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369375","display_name":"Jingjing Zhang","orcid":"https://orcid.org/0000-0002-1041-793X"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingjing Zhang","raw_affiliation_strings":["National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018084991","display_name":"Peisen Sun","orcid":"https://orcid.org/0000-0003-0796-2133"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peisen Sun","raw_affiliation_strings":["National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100636085","display_name":"Guanglin Li","orcid":"https://orcid.org/0000-0001-7617-1824"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guanglin Li","raw_affiliation_strings":["National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China. glli@snnu.edu.cn","National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China. glli@snnu.edu.cn","institution_ids":[]},{"raw_affiliation_string":"National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, The Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, College of Life Sciences, Shaanxi Normal University, Xi'an, 710119, Shaanxi, People's Republic of China","institution_ids":["https://openalex.org/I88830068"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5089045426"],"corresponding_institution_ids":["https://openalex.org/I88830068"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.1986,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.88402217,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"22","issue":"1","first_page":"10","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9555000066757202,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9555000066757202,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.030799999833106995,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.0020000000949949026,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6506309509277344},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.6156977415084839},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5568034648895264},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5168098211288452},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4959484040737152},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.46457231044769287},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46319788694381714},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44478827714920044},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3549419045448303},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3305140435695648},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20307046175003052},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17306479811668396},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.07740151882171631}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6506309509277344},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.6156977415084839},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5568034648895264},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5168098211288452},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4959484040737152},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.46457231044769287},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46319788694381714},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44478827714920044},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3549419045448303},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3305140435695648},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20307046175003052},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17306479811668396},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.07740151882171631},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-020-03944-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03944-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03944-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33407069","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33407069","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:58685f6307e44664ab117f326e495bf4","is_oa":true,"landing_page_url":"https://doaj.org/article/58685f6307e44664ab117f326e495bf4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:6700667","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7789375","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7789375","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7789375","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03944-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03944-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03944-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1132205522","display_name":null,"funder_award_id":"GK201403004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G161647425","display_name":null,"funder_award_id":"31370329","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4150949402","display_name":null,"funder_award_id":"31770333, 31370329, and 11631012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6239696139","display_name":null,"funder_award_id":"No. GK201403004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8457680715","display_name":null,"funder_award_id":"31770333","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8510984973","display_name":null,"funder_award_id":"11631012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8548722829","display_name":null,"funder_award_id":"NCET-12-0896","funder_id":"https://openalex.org/F4320334924","funder_display_name":"Program for New Century Excellent Talents in University"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334924","display_name":"Program for New Century Excellent Talents in University","ror":"https://ror.org/01mv9t934"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3120388013.pdf","grobid_xml":"https://content.openalex.org/works/W3120388013.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1866220599","https://openalex.org/W1981726010","https://openalex.org/W2031593782","https://openalex.org/W2044523575","https://openalex.org/W2058835062","https://openalex.org/W2074141093","https://openalex.org/W2087377443","https://openalex.org/W2101234009","https://openalex.org/W2108206849","https://openalex.org/W2122111042","https://openalex.org/W2147625377","https://openalex.org/W2177654732","https://openalex.org/W2177870565","https://openalex.org/W2224020790","https://openalex.org/W2463753492","https://openalex.org/W2530379120","https://openalex.org/W2570440397","https://openalex.org/W2591839765","https://openalex.org/W2596986410","https://openalex.org/W2600581473","https://openalex.org/W2601025444","https://openalex.org/W2601436215","https://openalex.org/W2770851023","https://openalex.org/W2789722850","https://openalex.org/W2890017579","https://openalex.org/W2911964244","https://openalex.org/W2914549078","https://openalex.org/W2940152749","https://openalex.org/W2944735543","https://openalex.org/W2945634821","https://openalex.org/W3001399224","https://openalex.org/W6639049664","https://openalex.org/W6672525023","https://openalex.org/W6735209729","https://openalex.org/W6735743382","https://openalex.org/W6748665499"],"related_works":["https://openalex.org/W3193043704","https://openalex.org/W4386259002","https://openalex.org/W1546989560","https://openalex.org/W3171520305","https://openalex.org/W3135126032","https://openalex.org/W1924178503","https://openalex.org/W4308716060","https://openalex.org/W4280648719","https://openalex.org/W4386937079","https://openalex.org/W2901774584"],"abstract_inverted_index":{"BACKGROUND:":[0],"Circular":[1],"RNA":[2,9,280],"(circRNA)":[3],"is":[4,48,85,121,139,362],"a":[5,11,67,162,168,205,276,295,355],"novel":[6],"type":[7],"of":[8,16,45,73,90,98,153,189,336],"with":[10,214,257],"closed-loop":[12],"structure.":[13],"Increasing":[14],"numbers":[15,188],"circRNAs":[17,31,41,74,84,135,175],"are":[18,94,104,352],"being":[19],"identified":[20],"in":[21,36,75,107,117,126,136,217,305,349],"plants":[22,103],"and":[23,25,110,113,132,191,199,230,233,253,270,292,312,327,344],"animals,":[24],"recent":[26,59],"studies":[27],"have":[28,56,65],"shown":[29],"that":[30,125],"play":[32],"an":[33],"important":[34],"role":[35],"gene":[37],"regulation.":[38],"Therefore,":[39],"identifying":[40],"from":[42,96,176,196],"increasing":[43],"amounts":[44],"RNA-seq":[46,177],"data":[47,240],"very":[49],"important.":[50],"However,":[51,77],"traditional":[52],"circRNA":[53,92,143,198,291,301,321,357,366],"recognition":[54,144,302,322],"methods":[55],"limitations.":[57],"In":[58,157],"years,":[60],"emerging":[61],"machine":[62,147,169,206,266,296,340],"learning":[63,148,170,207,267,297,341],"techniques":[64],"provided":[66],"good":[68,255],"approach":[69],"for":[70,119,299,364],"the":[71,88,151,210,218,237,265,271,313,330,334,339,345],"identification":[72],"animals.":[76],"using":[78,146,167,308],"these":[79,130],"features":[80],"to":[81,141,172,227,319,368],"identify":[82,134],"plant":[83,91,154,174,251,300,320,365],"infeasible":[86],"because":[87],"characteristics":[89,152],"sequences":[93],"different":[95,182],"those":[97],"animal":[99],"circRNAs.":[100,155],"For":[101],"example,":[102],"extremely":[105],"rich":[106],"splicing":[108,192],"signals":[109],"transposable":[111],"elements,":[112],"their":[114],"sequence":[115,194],"conservation":[116],"rice,":[118],"example":[120],"far":[122],"less":[123],"than":[124],"mammals.":[127],"To":[128],"solve":[129],"problems":[131],"better":[133],"plants,":[137],"it":[138],"urgent":[140],"develop":[142],"software":[145,163,359],"based":[149],"on":[150,236,289],"RESULTS:":[156],"this":[158,306,350],"study,":[159],"we":[160,180,203,222,245,263],"built":[161,269],"program":[164],"named":[165],"PCirc":[166],"method":[171],"predict":[173],"data.":[178,201],"First,":[179],"extracted":[181],"features,":[183],"including":[184],"open":[185],"reading":[186],"frames,":[187],"k-mers,":[190],"junction":[193],"coding,":[195],"rice":[197,290],"lncRNA":[200,293],"Second,":[202],"trained":[204],"model":[208,238,248,268,298,314,337,342],"by":[209,249],"random":[211,309],"forest":[212,310],"algorithm":[213],"tenfold":[215],"cross-validation":[216],"training":[219],"set.":[220],"Third,":[221],"evaluated":[223],"our":[224,247],"classification":[225],"according":[226],"accuracy,":[228],"precision,":[229],"F1":[231],"score,":[232],"all":[234],"scores":[235,259],"test":[239],"were":[241],"above":[242,260],"0.99.":[243],"Fourth,":[244],"tested":[246],"other":[250],"tests,":[252],"obtained":[254],"results,":[256],"accuracy":[258],"0.8.":[261],"Finally,":[262],"packaged":[264,353],"programming":[272,346],"script":[273],"used":[274,348],"into":[275,354],"locally":[277],"run":[278],"circular":[279],"prediction":[281,358],"software,":[282],"Pcirc":[283],"(":[284],"https://github.com/Lilab-SNNU/Pcirc":[285],").":[286],"CONCLUSION:":[287],"Based":[288],"data,":[294],"was":[303],"constructed":[304,343],"study":[307,351],"algorithm,":[311],"can":[315],"also":[316],"be":[317],"applied":[318],"such":[323],"as":[324],"Arabidopsis":[325],"thaliana":[326],"maize.":[328],"At":[329],"same":[331],"time,":[332],"after":[333],"completion":[335],"construction,":[338],"scripts":[347],"localized":[356],"Pcirc,":[360],"which":[361],"convenient":[363],"researchers":[367],"use.":[369]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}