⚙ Dashboard
OmniBioAI Ecosystem
Architecture · Codebase · Coverage · Health
Generated: 2026-07-23 13:26:42
checking...
files
9,212
documentation
83,712
code lines
2,439,620
comment lines
129,309
blank lines
346,975
total lines
2,915,904
OmniBioAI ecosystem
Click any node to see live health, latency and metrics
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enforced request path →
dev / clients
studio
Electron · v0.2.0
dev-hub
knowledge graph · :5173
sdk
Python SDK · :5190
iam-client
auth SDK
security-sdk
policy client
🔐 security plane
zero-trust boundary
api-gateway
JWT · trace prop · :8080
auth-service
bcrypt · JWT · :8001
policy-engine
RBAC/ABAC · :8002
hpc-policy-engine
GPU quota · :8003
security-audit
Redis streams · :8004
workbench
workbench
Django · 80+ plugins · :8000
lims
lab data · :7000
rag
PubMed · DeepSeek · :8090
workflow-bundles
WDL/Nextflow/CWL · :8098
control-center
health · images · :7070
services
toolserver
FastAPI bio tools · :9090
model-registry
ML versioning · :8095
opa
Open Policy Agent · :8181
ollama
Llama/DeepSeek · :11434
videos
tutorials · SDK · :8086
execution
tes
Slurm/AWS/Azure/GCP · :8081
tool-runtime
Docker/Singularity
tool-images
80+ bio tools · :8097
dev-docker
DGX · GPU env · :8082
healthy
down
not monitored
live from /summary · auto-refreshes every 30s
repositories
28
tracked by cloc
code lines
2,439,620
excl. vendored
largest repo
omni-studio
574,482 LOC
categories
5
core · sec · exec · infra · sdk
share by project
code lines · categorized by function
2,439,620
total LOC
core workbench41.0%
execution23.9%
sdk / clients23.8%
security8.1%
infrastructure3.1%
per-project breakdown
all repositories · sorted by code lines · click headers to sort
— items
per page
repository category files code comment blank share
languages
27
detected by cloc
dominant
HTML
31.7% of codebase
backend
17.0%
Python + SQL + notebooks
frontend
33.1%
HTML + CSS + TS + JS
language type distribution
grouped by role in the stack
🌐
frontend
806,815 LOC
33.1%
🔧
infra
704,018 LOC
28.9%
⚙️
config
431,345 LOC
17.7%
🐍
backend
413,730 LOC
17.0%
📄
docs
83,712 LOC
3.4%
lines of code by language
top languages · color = type
27
languages
frontend33.1%
infra28.9%
config17.7%
backend17.0%
docs3.4%
all languages
complete breakdown · click headers to sort
— items
per page
language type files code comment blank share
best-effort pytest collection · 2026-07-23 13:26:42
repos scanned
28
full ecosystem
with data
22
coverage collected
average
96.6%
across 22 repos
excellent ≥95%
18
repos
needs attention
1
below 85%
coverage by repository
sorted high to low
band distribution
repos per band
22
repos
≥95%18
85–94%3
<85%1
no data6
coverage summary
all repos · status · thresholds · click headers to sort
— items
per page
repository status coverage statements missed branches fail under
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monitored
services
healthy
UP
down
need attention
degraded
WARN
disk warnings
paths checked
status distribution
across all monitored services
of — UP
healthy
down
degraded
response latency
per service · proportional bars · color = health
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storage paths monitored by control center
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Local LLMs

Ollama models installed on this machine · API key configuration status

Ollama — Local LLMs 🟢 running
Model Size Modified
meditron:latest 3.8 GB 2026-07-14
medllama2:latest 3.8 GB 2026-07-14
llama3.1:70b 42.5 GB 2026-06-19
qwen2.5-coder:32b 19.9 GB 2026-06-19
deepseek-r1:32b 19.9 GB 2026-06-19
gemma2:27b 15.6 GB 2026-06-18
deepseek-coder-v2:16b 8.9 GB 2026-06-18
qwen2.5-coder:14b 9.0 GB 2026-06-18
mxbai-embed-large:latest 0.7 GB 2026-06-18
deepseek-r1:latest 5.2 GB 2026-05-12
llama3:latest 4.7 GB 2026-05-12
nomic-embed-text:latest 0.3 GB 2026-05-09
Cloud API Keys
Claude API (Anthropic) NOT SET
OpenAI API NOT SET

Execution Backends

Cloud and HPC execution backend configuration status

☁️ AWS Batch
NOT CONFIGURED
🔷 Azure Batch
NOT CONFIGURED
🟡 Google Cloud Batch
NOT CONFIGURED
Kubernetes
NOT CONFIGURED
🖥 Local Docker
✓ CONFIGURED
note Always available
Slurm HPC
NOT CONFIGURED

Reference Data

Reference genomes, indexes, and databases available on this machine

Reference Genomes & Indexes
Organism Assembly STAR BWA Bowtie2 Salmon CellRanger ClinVar dbSNP gnomAD COSMIC
🧬 Human GRCh37
🧬 Human GRCh38
🧬 Human T2T-CHM13
🐭 Mouse GRCm38 ····
🐭 Mouse GRCm39 ····
🐀 Rat GRCr8 · ····
🐟 Zebrafish GRCz11 · ····
🪰 Drosophila BDGP6 · ····
🧫 Yeast R64 · ····
🐒 Chimpanzee Pan_tro_3.0 · ····
🐵 Macaque Mmul_10 · ····
🪱 C. elegans WBcel235 · ····
🌿 Arabidopsis TAIR10 · ····
🐷 Pig Sscrofa11.1 · ····
🐔 Chicken GRCg7b · ····

* Zebrafish (GRCz11) STAR index requires 141GB RAM — exceeds DGX Spark capacity (128GB). Salmon and Bowtie2 indexes available. STAR index will be added post-launch.

Annotation Databases
ClinVar ✓ Available
COSMIC ✓ Available
dbSNP ✓ Available
gnomAD ✓ Available
Gene Ontology ✓ Available
InterPro ✓ Available
Pfam ✓ Available
UniProt ✓ Available

AI Knowledge Base

Could not reach control center for knowledge base stats.

Storage

Unavailable