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18. RECOMB 2014: Pittsburgh, PA, USA
- Roded Sharan:
Research in Computational Molecular Biology - 18th Annual International Conference, RECOMB 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings. Lecture Notes in Computer Science 8394, Springer 2014, ISBN 978-3-319-05268-7 - Derek Aguiar
, Eric M. Morrow, Sorin Istrail:
Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts. 1-17 - Emily Berger, Deniz Yörükoglu, Jian Peng, Bonnie Berger
HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data. 18-19 - Adam E. Bloniarz, Ameet Talwalkar, Jonathan Terhorst, Michael I. Jordan
Changepoint Analysis for Efficient Variant Calling. 20-34 - Rayan Chikhi, Antoine Limasset, Shaun Jackman
On the Representation of de Bruijn Graphs. 35-55 - Hamidreza Chitsaz, Mohammad Aminisharifabad:
Exact Learning of RNA Energy Parameters from Structure. 56-68 - Chen-Ping Fu, Vladimir Jojic, Leonard McMillan
An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq Data. 69-84 - Adrian Guthals, Christina Boucher, Nuno Bandeira:
The Generating Function Approach for Peptide Identification in Spectral Networks. 85-99 - Kelley Harris, Sara Sheehan, John A. Kamm
Decoding Coalescent Hidden Markov Models in Linear Time. 100-114 - Jan Hoinka, Alexey Berezhnoy
AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application. 115-128 - Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead
Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models. 129-143 - Arun Siddharth Konagurthu, Parthan Kasarapu
On Sufficient Statistics of Least-Squares Superposition of Vector Sets. 144-159 - Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
IDBA-MTP: A Hybrid MetaTranscriptomic Assembler Based on Protein Information. 160-172 - Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu:
MRFalign: Protein Homology Detection through Alignment of Markov Random Fields. 173-174 - Shaun Mahony, Matthew D. Edwards, Esteban O. Mazzoni
An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding. 175-176 - Siavash Mirarab
PASTA: Ultra-Large Multiple Sequence Alignment. 177-191 - Arne C. Müller, Frank J. Bruggeman, Brett G. Olivier
Fast Flux Module Detection Using Matroid Theory. 192-206 - Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, David Haussler, Benedict Paten:
Building a Pangenome Reference for a Population. 207-221 - Keith Noto, Carla E. Brodley, Saeed Majidi, Diana W. Bianchi, Donna K. Slonim:
CSAX: Characterizing Systematic Anomalies in eXpression Data. 222-236 - Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads. 237-249 - Benjamin J. Raphael, Fabio Vandin:
Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation Data. 250-264 - Yana Safonova, Anton Bankevich, Pavel A. Pevzner:
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. 265-279 - Mingfu Shao, Yu Lin
An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes. 280-292 - Raunak Shrestha, Ermin Hodzic, Jake Yeung
HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time. 293-306 - Ewa Szczurek, Niko Beerenwinkel:
Modeling Mutual Exclusivity of Cancer Mutations. 307-308 - Armin Töpfer, Tobias Marschall, Rowena A. Bull
Viral Quasispecies Assembly via Maximal Clique Enumeration. 309-310 - Hua Wang, Heng Huang, Chris H. Q. Ding:
Correlated Protein Function Prediction via Maximization of Data-Knowledge Consistency. 311-325 - Rui Wang, Scott C. Schmidler
Bayesian Multiple Protein Structure Alignment. 326-339 - Zhanyong Wang, Jae Hoon Sul, Sagi Snir, José Antonio Lozano, Eleazar Eskin:
Gene-Gene Interactions Detection Using a Two-Stage Model. 340-355 - Shutan Xu, Shuxue Zou, Lincong Wang:
A Geometric Clustering Algorithm and Its Applications to Structural Data. 356-370 - Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc:
A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation. 371-384 - Yun William Yu
Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification. 385-399 - Shay Zakov, Vineet Bafna
Reconstructing Breakage Fusion Bridge Architectures Using Noisy Copy Numbers. 400-417 - Yu Zheng, Louxin Zhang:
Reconciliation with Non-binary Gene Trees Revisited. 418-432 - Jianling Zhong, Todd Wasson, Alexander J. Hartemink:
Learning Protein-DNA Interaction Landscapes by Integrating Experimental Data through Computational Models. 433-447 - Marinka Zitnik, Blaz Zupan:
Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix Completion. 448-462
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