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International Journal of High Performance Computing Applications, Volume 34
Volume 34, Number 1, January 2020
- José M. Cecilia:
Guest editors' note: Special issue on novel high-performance computing algorithms and platforms in bioinformatics.
- Javier Prades
, Baldomero Imbernón
Maximizing resource usage in multifold molecular dynamics with rCUDA. - Christian Ponte-Fernández
Fast search of third-order epistatic interactions on CPU and GPU clusters. - Baldomero Imbernón
HYPERDOCK: Improving virtual screening through parallel hyperheuristics. - Marta Garcia-Gasulla
Runtime mechanisms to survive new HPC architectures: A use case in human respiratory simulations. - César González, Mariano Pérez
HPG-HMapper: A DNA hydroxymethylation analysis tool.
- Akrem Benatia
Sparse matrix partitioning for optimizing SpMV on CPU-GPU heterogeneous platforms. - José Miguel Mantas
Hybrid OpenMP-CUDA parallel implementation of a deterministic solver for ultrashort DG-MOSFETs. - Pawel Russek
A study of the loops control for reconfigurable computing with OpenCL in the LABS local search problem. - Daobi Chen, Liang Yuan, Yunquan Zhang, Jingfu Yan, David K. Kahaner:
HPC software capability landscape in China.
Volume 34, Number 2, March 2020
- Jue Wang, Xinfu He:
Special issue on advanced simulation in engineering. - Xinming Qin
The static parallel distribution algorithms for hybrid density-functional calculations in HONPAS package. - Xiaodong Hu, Zhonghua Lu
A parallel algorithm for chimera grid with implicit hole cutting method. - Xianmeng Wang, Zhifeng Zhou, Changjun Hu, Wen Yang, Minfu Zhao, Zhaoshun Wang, Peng Shi:
Accelerating and tuning small matrix multiplications on Sunway TaihuLight: A case study of spectral element CFD Code Nek5000.
- Gary Lawson, Masha Sosonkina, Tal Ezer, Yuzhong Shen:
Applying EMD/HHT analysis to power traces of applications executed on systems with Intel Xeon Phi. - Mario Hernández, Juan M. Cebrian
Offloading strategies for Stencil kernels on the KNC Xeon Phi architecture: Accuracy versus performance. - Atsushi Hori, Kazumi Yoshinaga, Thomas Hérault
Overhead of using spare nodes. - Jean Luca Bez
I/O performance of the Santos Dumont supercomputer. - Louis-Claude Canon, Aurélie Kong Win Chang, Yves Robert
Scheduling independent stochastic tasks under deadline and budget constraints.
Volume 34, Number 3, May 2020
- Roberto Porcù
HPC simulations of brownout: A noninteracting particles dynamic model. - Byron E. Moutafis, George A. Gravvanis
Hybrid multi-projection method using sparse approximate inverses on GPU clusters. - Tieqiang Mo, Renfa Li:
Iteratively solving sparse linear system based on PaRSEC task scheduling. - David Zwick
A scalable Euler-Lagrange approach for multiphase flow simulation on spectral elements. - Sébastien Cayrols
Parallelization of the solve phase in a task-based Cholesky solver using a sequential task flow model. - J. C. S. Kadupitiya, Geoffrey C. Fox, Vikram Jadhao
Machine learning for parameter auto-tuning in molecular dynamics simulations: Efficient dynamics of ions near polarizable nanoparticles.
Volume 34, Number 4, July 2020
- Kadir Akbudak
Asynchronous computations for solving the acoustic wave propagation equation. - Yang Liu
A parallel hierarchical blocked adaptive cross approximation algorithm. - Tom Peterka
Priority research directions for in situ data management: Enabling scientific discovery from diverse data sources. - Francesco Cremonesi
Analytic performance modeling and analysis of detailed neuron simulations. - Kevin Verma
A PCISPH implementation using distributed multi-GPU acceleration for simulating industrial engineering applications.
- A. Grannan, Kanika Sood
Understanding the landscape of scientific software used on high-performance computing platforms.
Volume 34, Number 5, September 2020
- Walid Keyrouz, Michael Mascagni:
CRE2019 Special Issue Introduction IJHPCA.
- David H. Bailey
Reproducibility and variable precision computing. - Gregory Kiar
Comparing perturbation models for evaluating stability of neuroimaging pipelines. - Roman Iakymchuk, María Barreda Vayá, Stef Graillat, José Ignacio Aliaga
Reproducibility of parallel preconditioned conjugate gradient in hybrid programming environments. - Brett Neuman
Fast, good, and repeatable: Summations, vectorization, and reproducibility.
- Srdan Nikolic
Optimizing parallel particle tracking in Brownian motion using machine learning. - Amanda Bienz
Reducing communication in algebraic multigrid with multi-step node aware communication. - Paul F. Fischer, Misun Min
Scalability of high-performance PDE solvers.
Volume 34, Number 6, November 2020
- James D. Stevens
A mechanism for balancing accuracy and scope in cross-machine black-box GPU performance modeling. - Masaki Iwasawa
Implementation and performance of Barnes-hut n-body algorithm on extreme-scale heterogeneous many-core architectures. - Tianjiao Sun
A study of vectorization for matrix-free finite element methods. - Mohammed A. Al Farhan
MAGMA templates for scalable linear algebra on emerging architectures. - Cristian Ramon-Cortes
AutoParallel: Automatic parallelisation and distributed execution of affine loop nests in Python.
- Hank Childs, Sean Ahern, James P. Ahrens, Andrew C. Bauer, Janine Bennett, E. Wes Bethel, Peer-Timo Bremer, Eric Brugger, Joseph Cottam, Matthieu Dorier, Soumya Dutta
A terminology for in situ visualization and analysis systems.
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