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Sean D. Mooney
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2020 – today
- 2023
- [j30]Timothy Bergquist
, Thomas Schaffter
Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine. J. Am. Medical Informatics Assoc. 31(1): 35-44 (2023) - [j29]Chethan Jujjavarapu
Predicting decompression surgery by applying multimodal deep learning to patients' structured and unstructured health data. BMC Medical Informatics Decis. Mak. 23(1): 2 (2023) - 2022
- [c19]Chao Yan, Yao Yan, Ziqi Zhang, Zhiyu Wan, Justin Guinney, Sean D. Mooney, Bradley A. Malin:
Assessing Machine Learning Based Generators for Synthetic Electronic Health Records: A Benchmarking. AMIA 2022 - [c18]Serena Jinchen Xie, Flavia Kapos, Stephen J. Mooney, Sean D. Mooney, Kari A. Stephens, Andrea L. Hartzler, Abhishek Pratap:
Geospatial divide in real-world EHR data: Analytical workflow to assess regional biases and potential impact on health equity. AMIA 2022 - [i3]Yao Yan, Thomas Yu, Kathleen Muenzen, Sijia Liu, Connor Boyle, George Koslowski, Jiaxin Zheng, Nicholas J. Dobbins
The NLP Sandbox: an efficient model-to-data system to enable federated and unbiased evaluation of clinical NLP models. CoRR abs/2206.14181 (2022) - [i2]Chao Yan, Yao Yan, Zhiyu Wan, Ziqi Zhang, Larsson Omberg, Justin Guinney, Sean D. Mooney, Bradley A. Malin:
A Multifaceted Benchmarking of Synthetic Electronic Health Record Generation Models. CoRR abs/2208.01230 (2022) - 2021
- [j28]Jimmy Phuong
Information needs and priority use cases of population health researchers to improve preparedness for future hurricanes and floods. J. Am. Medical Informatics Assoc. 28(2): 249-260 (2021) - [j27]Diane M. Korngiebel
Considering the possibilities and pitfalls of Generative Pre-trained Transformer 3 (GPT-3) in healthcare delivery. npj Digit. Medicine 4 (2021) - [c17]Yao Yan, Thomas Schaffter, Timothy Bergquist, Thomas Yu, Justin Prosser, Sean D. Mooney, Justin Guinney:
A Continuous Crowd-sourced Challenge for Benchmarking COVID-19 Health Outcome Prediction. AMIA 2021 - [c16]Lara M. Mangravite, Sean D. Mooney, Iddo Friedberg, Justin Guinney:
Establishing the reliability of algorithms. PSB 2021 - 2020
- [j26]Nicholas J. Dobbins
Leaf: an open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research. J. Am. Medical Informatics Assoc. 27(1): 109-118 (2020) - [j25]Timothy Bergquist
Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction. J. Am. Medical Informatics Assoc. 27(9): 1393-1400 (2020) - [j24]Abhishek Pratap
Indicators of retention in remote digital health studies: a cross-study evaluation of 100, 000 participants. npj Digit. Medicine 3 (2020)
2010 – 2019
- 2019
- [j23]Jimmy Phuong, Christina Bandaragoda
Automated retrieval, preprocessing, and visualization of gridded hydrometeorology data products for spatial-temporal exploratory analysis and intercomparison. Environ. Model. Softw. 116: 119-130 (2019) - [j22]Sean D. Mooney
Continuing challenges swirl around bioinformatics service delivery. J. Biomed. Informatics 94 (2019) - [j21]Kymberleigh A. Pagel
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome. PLoS Comput. Biol. 15(6) (2019) - [c15]Timothy Bergquist, Vikas Pejaver, Noah Hammarlund, Sean D. Mooney, Stephen J. Mooney:
Detecting Seasonal, Holiday, and Rare Events from Trauma Data in the Electronic Health Record. AMIA 2019 - [c14]Yongqun He, Edison Ong, Jennifer Schaub, Frederick Dowd, John F. O'Toole, Anastasios Siapos, Christian G. Reich, Sarah Seager, Ling Wang, Hong Yu, Jie Zheng, Christian J. Stoeckert Jr., Xiaolin Yang, Sheng Yang, Becky Steck, Christopher Park, Laura Barisoni, Matthias Kretzler, Jonathan Himmelfarb, Ravi Iyengar, Sean D. Mooney:
OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis. ICBO 2019: 1-10 - [i1]Abhishek Pratap, Elias Chaibub Neto, Phil Snyder, Carl Stepnowsky, Noémie Elhadad, Daniel Grant, Matthew H. Mohebbi, Sean D. Mooney, Christine Suver
Indicators of retention in remote digital health studies: A cross-study evaluation of 100, 000 participants. CoRR abs/1910.01165 (2019) - 2018
- [j20]Mary Regina Boland
Uncovering exposures responsible for birth season - disease effects: a global study. J. Am. Medical Informatics Assoc. 25(3): 275-288 (2018) - [c13]Yongqun He, Becky Steck, Edison Ong, Laura Mariani, Chrysta Lienczewski, Ulysses J. Balis, Matthias Kretzler, Jonathan Himmelfarb, John F. Bertram, Evren U. Azeloglu, Ravi Iyengar, Deborah Hoshizaki, Sean D. Mooney:
KTAO: A Kidney Tissue Atlas Ontology to Support Community-Based Kidney Knowledge Base Development and Data Integration. ICBO 2018 - 2017
- [j19]Kymberleigh A. Pagel, Vikas Pejaver, Guan Ning Lin, Hyun-Jun Nam, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva
When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants. Bioinform. 33(14): i389-i398 (2017) - [c12]Abhishek Pratap, Joaquin A. Anguera, Brenna N. Renn
The feasibility of using smartphones to assess and remediate depression in Hispanic/Latino individuals nationally. UbiComp/ISWC Adjunct 2017: 854-860 - [c11]Alexander A. Morgan, Dana C. Crawford, Joshua C. Denny, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner:
Session Introduction. PSB 2017: 348-355 - 2016
- [j18]Jose Lugo-Martinez
The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease. PLoS Comput. Biol. 12(8) (2016) - [c10]Meliha Yetisgen, Lucy Vanderwende, Tony Black, Sean D. Mooney, Peter Tarczy-Hornoch:
A New Way of Representing Clinical Reports for Rapid Phenotyping. CRI 2016 - [c9]Alexander A. Morgan, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner:
Session Introduction. PSB 2016: 243-248 - [c8]Steven E. Brenner, Stephen Kingsmore, Sean D. Mooney, Robert Nussbaum, Jennifer Puck:
Use of Genome Data in Newborns as a Starting Point for Life-Long Precision Medicine. PSB 2016: 568-575 - 2015
- [j17]Iddo Friedberg
Ten Simple Rules for a Community Computational Challenge. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j16]Mark N. Wass
The automated function prediction SIG looks back at 2013 and prepares for 2014. Bioinform. 30(14): 2091-2092 (2014) - [j15]Yun-Ching Chen, Christopher Douville, Cheng Wang, Noushin Niknafs, Grace H. T. Yeo
A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing. PLoS Comput. Biol. 10(9) (2014) - 2013
- [j14]Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1(4): 196-201 (2013) - [j13]Tobias Wittkop, Emily TerAvest, Uday S. Evani, K. Mathew Fleisch, Ari E. Berman, Corey Powell, Nigam H. Shah, Sean D. Mooney
STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation. BMC Bioinform. 14: 53 (2013) - 2011
- [j12]Troy B. Hawkins, Jessica Dantzer, Brandon Peters, Mary Dinauer, Keithanne Mockaitis, Sean D. Mooney
Identifying viral integration sites using SeqMap 2.0. Bioinform. 27(5): 720-722 (2011) - [j11]Tobias Wittkop, Sean D. Mooney:
Introduction: Advances in Computational Systems Bioinformatics. J. Bioinform. Comput. Biol. 9(2) (2011) - 2010
- [j10]Fuxiao Xin, Steven A. Myers, Yong Fuga Li, David N. Cooper
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease. Bioinform. 26(16): 1975-1982 (2010) - [j9]Fuxiao Xin, Steven A. Myers, Yong Fuga Li, David N. Cooper, Sean D. Mooney, Predrag Radivojac:
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease. BMC Bioinform. 11(S-10): O4 (2010) - [c7]Shuyan Li, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac:
Loss of Post-Translational Modification Sites in Disease. Pacific Symposium on Biocomputing 2010: 337-347
2000 – 2009
- 2009
- [j8]Biao Li, Vidhya G. Krishnan, Matthew E. Mort, Fuxiao Xin, Kishore K. Kamati, David N. Cooper
Automated inference of molecular mechanisms of disease from amino acid substitutions. Bioinform. 25(21): 2744-2750 (2009) - 2008
- [j7]Sean D. Mooney
Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group. Briefings Bioinform. 9(1): 69-74 (2008) - [j6]Arti Singh, Adebayo Olowoyeye, Peter H. Baenziger, Jessica Dantzer, Maricel G. Kann, Predrag Radivojac, Randy W. Heiland
MutDB: update on development of tools for the biochemical analysis of genetic variation. Nucleic Acids Res. 36(Database-Issue): 815-819 (2008) - [c6]Predrag Radivojac, Peter H. Baenziger, Maricel G. Kann, Matthew E. Mort, Matthew W. Hahn, Sean D. Mooney
Gain and loss of phosphorylation sites in human cancer. ECCB 2008: 241-247 - 2007
- [c5]Xin Wang, Guohua Wang, Changyu Shen, Lang Li, Xinguo Wang, Sean D. Mooney, Howard J. Edenberg, Jeremy Sanford, Yunlong Liu:
Refining Detection of RNA-Protein Binding Regions by Pyrosequencing of RNA Fragments. BIOCOMP 2007: 664-672 - 2005
- [j5]Sean D. Mooney
Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. Briefings Bioinform. 6(1): 44-56 (2005) - [j4]Jessica Dantzer, Charles W. Moad, Randy W. Heiland
MutDB services: interactive structural analysis of mutation data. Nucleic Acids Res. 33(Web-Server-Issue): 311-314 (2005) - [c4]Patricia C. Babbitt, Philip E. Bourne, Sean D. Mooney:
Introduction to Informatics Approaches in Structural Genomics: Modeling and Representation of Function from Macromolecular STructure. Pacific Symposium on Biocomputing 2005 - 2004
- [c3]Sean D. Mooney, Philip E. Bourne, Patricia C. Babbitt:
Session Introduction. Pacific Symposium on Biocomputing 2004: 372-374 - 2003
- [j3]Sean D. Mooney
MutDB: annotating human variation with functionally relevant data. Bioinform. 19(14): 1858-1860 (2003) - [j2]Rattikorn Hewett, John H. Leuchner, Sean D. Mooney
Analysis of Mutations in the COLIA1 Gene with Second-Order Rule Induction. Int. J. Pattern Recognit. Artif. Intell. 17(5): 721-740 (2003) - [c2]Sean D. Mooney, Patricia C. Babbitt:
Informatics Approaches in Structural Genomics - Session Introduction. Pacific Symposium on Biocomputing 2003: 176-179 - 2002
- [j1]Sean D. Mooney
The functional importance of disease-associated mutation. BMC Bioinform. 3: 24 (2002) - [c1]Rattikorn Hewett, John H. Leuchner, Choh Man Teng, Sean D. Mooney, Teri E. Klein:
Compression-Based Induction and Genome Data. FLAIRS 2002: 344-348
Coauthor Index
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