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Marco Pagni
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2020 – today
- 2024
- [i1]Jerven T. Bolleman, Vincent Emonet, Adrian M. Altenhoff, Amos Bairoch, Marie-Claude Blatter, Alan J. Bridge, Severine Duvaud, Elisabeth Gasteiger, Dmitry Kuznetsov, Sébastien Moretti, Pierre-André Michel, Anne Morgat, Marco Pagni, Nicole Redaschi, Monique Zahn-Zabal, Tarcisio Mendes de Farias, Ana Claudia Sima:
A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications. CoRR abs/2410.06010 (2024) - 2021
- [j30]Sébastien Moretti
, T. Van Du Tran
MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models. Nucleic Acids Res. 49(Database-Issue): D570-D574 (2021)
2010 – 2019
- 2019
- [j29]Nurgazy Sulaimanov
Inferring gene expression networks with hubs using a degree weighted Lasso approach. Bioinform. 35(6): 987-994 (2019) - [j28]T. Van Du Tran
Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis. Bioinform. 35(13): 2258-2266 (2019) - 2017
- [j27]Anne Morgat
Updates in Rhea - an expert curated resource of biochemical reactions. Nucleic Acids Res. 45(Database-Issue): D415-D418 (2017) - 2016
- [j26]Sébastien Moretti
MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. Nucleic Acids Res. 44(Database-Issue): 523-526 (2016) - 2014
- [j25]Thomas Bernard
Reconciliation of metabolites and biochemical reactions for metabolic networks. Briefings Bioinform. 15(1): 123-135 (2014) - 2013
- [j24]Mathias Ganter, Thomas Bernard
MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks. Bioinform. 29(6): 815-816 (2013) - [j23]Thierry Schüpbach, Marco Pagni
pfsearchV3: a code acceleration and heuristic to search PROSITE profiles. Bioinform. 29(9): 1215-1217 (2013) - [j22]Marco Pagni
Density-based hierarchical clustering of pyro-sequences on a large scale - the case of fungal ITS1. Bioinform. 29(10): 1268-1274 (2013) - 2011
- [c3]Guido Bologna, Anne-Lise Veuthey, Marco Pagni
A Preliminary Study on the Prediction of Human Protein Functions. IWINAC (1) 2011: 334-343
2000 – 2009
- 2009
- [j21]Alexandre Gattiker, Christophe Dessimoz
The Microbe browser for comparative genomics. Nucleic Acids Res. 37(Web-Server-Issue): 296-299 (2009) - 2008
- [j20]Heinz Stockinger
Experience using web services for biological sequence analysis. Briefings Bioinform. 9(6): 493-505 (2008) - [c2]Marco Pagni
A Multi-protocol Bioinformatics Web Service: Use SOAP, Take a REST or Go with HTML. CCGRID 2008: 728-734 - 2007
- [j19]Marco Pagni
MyHits: improvements to an interactive resource for analyzing protein sequences. Nucleic Acids Res. 35(Web-Server-Issue): 433-437 (2007) - [j18]Jörg Hau, Michael Muller, Marco Pagni
HitKeeper, a generic software package for hit list management. Source Code Biol. Medicine 2 (2007) - 2006
- [j17]Nicolas Hulo, Amos Bairoch
The PROSITE database. Nucleic Acids Res. 34(Database-Issue): 227-230 (2006) - [c1]Heinz Stockinger
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems. e-Science 2006: 58 - 2005
- [j16]Peter Sperisen, Marco Pagni
JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture. BMC Bioinform. 6: 216 (2005) - [j15]Nicola J. Mulder
InterPro, progress and status in 2005. Nucleic Acids Res. 33(Database-Issue): 201-205 (2005) - 2004
- [j14]Peter Sperisen, Christian Iseli
trome, trEST and trGEN: databases of predicted protein sequences. Nucleic Acids Res. 32(Database-Issue): 509-511 (2004) - [j13]Marco Pagni
MyHits: a new interactive resource for protein annotation and domain identification. Nucleic Acids Res. 32(Web-Server-Issue): 332-335 (2004) - 2003
- [j12]Alexandre Gattiker, Karine Michoud, Catherine Rivoire
Automated annotation of microbial proteomes in SWISS-PROT. Comput. Biol. Chem. 27(1): 49-58 (2003) - [j11]Nicola J. Mulder, Rolf Apweiler
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31(1): 315-318 (2003) - [j10]Laurent Falquet, Lorenza Bordoli, Vassilios Ioannidis
Swiss EMBnet node web server. Nucleic Acids Res. 31(13): 3782-3783 (2003) - 2002
- [j9]Nicola J. Mulder
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites. Briefings Bioinform. 3(3): 225-235 (2002) - [j8]Christian J. A. Sigrist
PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors. Briefings Bioinform. 3(3): 265-274 (2002) - [j7]Laurent Falquet, Marco Pagni
The PROSITE database, its status in 2002. Nucleic Acids Res. 30(1): 235-238 (2002) - 2001
- [j6]Marco Pagni
Making Sense of Score Statistics for Sequence Alignments. Briefings Bioinform. 2(1): 51-67 (2001) - [j5]Thomas Junier, Marco Pagni
mmsearch: a motif arrangement language and search program. Bioinform. 17(12): 1234-1235 (2001) - [j4]Rolf Apweiler
The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29(1): 37-40 (2001) - [j3]Marco Pagni
trEST, trGEN and Hits: access to databases of predicted protein sequences. Nucleic Acids Res. 29(1): 148-151 (2001) - 2000
- [j2]Thomas Junier, Marco Pagni
Dotlet: diagonal plots in a Web browser. Bioinform. 16(2): 178-179 (2000) - [j1]Rolf Apweiler
InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinform. 16(12): 1145-1150 (2000)
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