Acts of Commanding and Promising in Dynamified Common Sense Term-Sequence-Deontic-Alethic Logic - Katsuhiko Sano; Tomoyuki Yamada (Dynamics in Logic and Language - Third Tsinghua Interdisciplinary Workshop on Logic, Language, and Meaning, TLLM 2022, Virtual Event, April 1-4, 2022, Revised Selected Papers, 2022)

Term-Sequence-Modal Logics - Takahiro Sawasaki; Katsuhiko Sano; Tomoyuki Yamada (Logic, Rationality, and Interaction - 7th International Workshop, LORI 2019, Chongqing, China, October 18-21, 2019, Proceedings, 2019)

Logic, Rationality, and Interaction - 6th International Workshop, LORI 2017, Sapporo, Japan, September 11-14, 2017, Proceedings - Alexandru Baltag; Jeremy Seligman; Tomoyuki Yamada (Springer, 2017)

Dynamic Logic of Propositional Commitments - Tomoyuki Yamada (Between Logic and Reality - Modeling Inference, Action and Understanding, 2012)

UTGB/medaka: genomic resource database for medaka biology - Budrul Ahsan; Daisuke Kobayashi; Tomoyuki Yamada; Masahiro Kasahara; Shin Sasaki; Taro L. Saito; Yukinobu Nagayasu; Koichiro Doi; Yoichiro Nakatani; Wei Qu; Tomoko Jindo; Atsuko Shimada; et al. (Nucleic Acids Res., 2008)

Logical dynamics of some speech acts that affect obligations and preferences - Tomoyuki Yamada (Synth., 2008)

Acts of Promising in Dynamified Deontic Logic - Tomoyuki Yamada (New Frontiers in Artificial Intelligence, JSAI 2007 Conference and Workshops, Miyazaki, Japan, June 18-22, 2007, Revised Selected Papers, 2007)

PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome - Tomoyuki Yamada; Haruhiko Soma; Shinichi Morishita (Nucleic Acids Res., 2006)

Acts of Commanding and Changing Obligations - Tomoyuki Yamada (Computational Logic in Multi-Agent Systems, 7th International Workshop, CLIMA VII, Hakodate, Japan, May 8-9, 2006, Revised Selected and Invited Papers, 2006)

Logical Dynamics of Commands and Obligations - Tomoyuki Yamada (New Frontiers in Artificial Intelligence, JSAI 2006 Conference and Workshops, Tokyo, Japan, June 5-9 2006, Revised Selected Papers, 2006)

Accelerated off-target search algorithm for siRNA - Tomoyuki Yamada; Shinichi Morishita (Bioinform., 2005)

5'SAGE: 5'-end Serial Analysis of Gene Expression database - Yasuhiro Kasai; Shin-ichi Hashimoto; Tomoyuki Yamada; Jun Sese; Sumio Sugano; Kouji Matsushima; Shinichi Morishita (Nucleic Acids Res., 2005)

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference - Yuki Naito; Tomoyuki Yamada; Takahiro Matsumiya; Kumiko Ui-Tei; Kaoru Saigo; Shinichi Morishita (Nucleic Acids Res., 2005)

Computing Highly Specific and Noise-tolerant Oligomers Efficiently - Tomoyuki Yamada; Shinichi Morishita (J. Bioinform. Comput. Biol., 2004)

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference - Yuki Naito; Tomoyuki Yamada; Kumiko Ui-Tei; Shinichi Morishita; Kaoru Saigo (Nucleic Acids Res., 2004)

Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently - Tomoyuki Yamada; Shinichi Morishita (2nd IEEE Computer Society Bioinformatics Conference, CSB 2003, Stanford, CA, USA, August 11-14, 2003, 2003)

The Gene Resource Locator: gene locus maps for transcriptome analysis - Toshihiko Honkura; Jun Ogasawara; Tomoyuki Yamada; Shinichi Morishita (Nucleic Acids Res., 2002)

Identification of Person Objects in Four-Scenes Comics of Japanese Newspapers - Tomoyuki Yamada; Toyohide Watanabe (Graphics Recognition, Recent Advances, Third International Workshop, GREC'99 Jaipur, India, September 26-27, 1999, Selected Papers, 1999)