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C. Titus Brown
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- affiliation: Michigan State University, East Lansing, MI, USA
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2020 – today
- 2022
- [j16]Daniel M. Portik, C. Titus Brown, N. Tessa Pierce-Ward
:
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets. BMC Bioinform. 23(1): 541 (2022) - [j15]Michael J. Roach
Ten simple rules and a template for creating workflows-as-applications. PLoS Comput. Biol. 18(12): 1010705 (2022) - [c6]Reza Mazloom, Leighton Pritchard, C. Titus Brown, Boris A. Vinatzer, Lenwood S. Heath:
LINgroups as a principled approach to compare and integrate multiple bacterial taxonomies. BCB 2022: 55:1-55:7 - 2021
- [j14]Moustafa Shokrof, C. Titus Brown, Tamer A. Mansour
MQF and buffered MQF: quotient filters for efficient storage of k-mers with their counts and metadata. BMC Bioinform. 22(1): 71 (2021) - [j13]Faryad Sahneh, Meghan A. Balk
Ten simple rules to cultivate transdisciplinary collaboration in data science. PLoS Comput. Biol. 17(5) (2021) - 2020
- [j12]Xianying Liu
VA-Store: A Virtual Approximate Store Approach to Supporting Repetitive Big Data in Genome Sequence Analyses. IEEE Trans. Knowl. Data Eng. 32(3): 602-616 (2020)
2010 – 2019
- 2019
- [j11]Adrienne Hoarfrost
Sequencing data discovery with MetaSeek. Bioinform. 35(22): 4857-4859 (2019) - 2018
- [j10]Matija Brozovic, Christelle Dantec
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Nucleic Acids Res. 46(Database-Issue): D718-D725 (2018) - [i6]Daniel S. Katz
The principles of tomorrow's university. F1000Research 7: 1926 (2018) - 2017
- [j9]Daniel S. Standage
khmer release v2.1: software for biological sequence analysis. J. Open Source Softw. 2(15): 272 (2017) - [j8]Nicolas P. Rougier
Sustainable computational science: the ReScience initiative. PeerJ Comput. Sci. 3: e142 (2017) - [c5]Konrad J. Karczewski, Nicholas P. Tatonetti, Chirag J. Patel, Arjun K. Manrai, C. Titus Brown, John P. A. Ioannidis:
Session Introduction. PSB 2017: 117-119 - [i5]Nicolas P. Rougier
Sustainable computational science: the ReScience initiative. CoRR abs/1707.04393 (2017) - 2016
- [j7]C. Titus Brown
sourmash: a library for MinHash sketching of DNA. J. Open Source Softw. 1(5): 27 (2016) - [j6]Matija Brozovic, Cyril Martin, Christelle Dantec
ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. Nucleic Acids Res. 44(Database-Issue): 808-818 (2016) - 2015
- [c4]Yarong Gu, Xianying Liu, Qiang Zhu, Youchao Dong, C. Titus Brown, Sakti Pramanik:
A new method for DNA sequencing error verification and correction via an on-disk index tree. BCB 2015: 503-504 - [i4]Michael R. Crusoe
The khmer software package: enabling efficient nucleotide sequence analysis. F1000Research 4: 900 (2015) - [i3]Qingpeng Zhang, Sherine Awad, C. Titus Brown:
Crossing the streams: a framework for streaming analysis of short DNA sequencing reads. PeerJ Prepr. 3: e890 (2015) - 2014
- [j5]James R. Cole, Qiong Wang, Jordan A. Fish, Benli Chai, Donna M. McGarrell, Yanni Sun
Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res. 42(Database-Issue): 633-642 (2014) - 2013
- [c3]Meznah Almutairy, Jordan A. Fish, C. Titus Brown
Space-efficient read indexing and retrieval based on compressed de Bruijn graphs. ICCABS 2013: 1 - [i2]Eric McDonald, C. Titus Brown:
khmer: Working with Big Data in Bioinformatics. CoRR abs/1303.2223 (2013) - 2012
- [j4]Jason Pell
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs. Proc. Natl. Acad. Sci. USA 109(33): 13272-13277 (2012) - [j3]Cameron Neylon
Changing computational research. The challenges ahead. Source Code Biol. Medicine 7: 2 (2012) - [c2]Jason Pell, Arend Hintze
Workshop: Graph compression approaches in assembly. ICCABS 2012: 1-2 - [i1]Dhavide A. Aruliah, C. Titus Brown, Neil P. Chue Hong, Matt Davis, Richard T. Guy, Steven H. D. Haddock, Katy Huff, Ian Mitchell, Mark D. Plumbley, Ben Waugh, Ethan P. White, Greg Wilson, Paul Wilson:
Best Practices for Scientific Computing. CoRR abs/1210.0530 (2012)
2000 – 2009
- 2005
- [j2]C. Titus Brown
Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison. BMC Bioinform. 6: 70 (2005)
1990 – 1999
- 1999
- [j1]Mark A. Bedau, C. Titus Brown
Visualizing Evolutionary Activity of Genotypes. Artif. Life 5(1): 17-35 (1999) - 1995
- [c1]Christoph Adami, C. Titus Brown
Abundance-Distributions in Artificial Life and Stochastic Models: "Age and Area" Revisited. ECAL 1995: 503-514
Coauthor Index
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