EnzChemRED, a rich enzyme chemistry relation extraction dataset - Po-Ting Lai; Elisabeth Coudert; Lucila Aimo; Kristian B. Axelsen; Lionel Breuza; Edouard De Castro; Marc Feuermann; Anne Morgat; Lucille Pourcel; Ivo Pedruzzi; Sylvain Poux; Nicole Redaschi; et al. (CoRR, 2024)

Annotation of biologically relevant ligands in UniProtKB using ChEBI - Elisabeth Coudert; Sebastien Gehant; Edouard De Castro; Monica Pozzato; Delphine Baratin; Teresa Batista Neto; Christian J. A. Sigrist; Nicole Redaschi; Alan J. Bridge; Lucila Aimo; Ghislaine Argoud-Puy; Andrea H. Auchincloss; et al. (Bioinform., 2023)

UniProt, ChEBI and IDSM Sachem: exploring biologically relevant ligands - Sebastien Gehant; Elisabeth Coudert; Anne Morgat; Jerven T. Bolleman; Nicole Redaschi; Alan J. Bridge; The UniProt Consortium (14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), Basel, Switzerland, February 13-16, 2023, 2023)

Rhea, the reaction knowledgebase in 2022 - Parit Bansal; Anne Morgat; Kristian B. Axelsen; Venkatesh Muthukrishnan; Elisabeth Coudert; Lucila Aimo; Nevila Hyka-Nouspikel; Elisabeth Gasteiger; Arnaud Kerhornou; Teresa Batista Neto; Monica Pozzato; Marie-Claude Blatter; et al. (Nucleic Acids Res., 2022)

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase - Alistair MacDougall; Vladimir Volynkin; Rabie Saidi; Diego Poggioli; Hermann Zellner; Emma Hatton-Ellis; Vishal Joshi; Claire O'Donovan; Sandra E. Orchard; Andrea H. Auchincloss; Delphine Baratin; Jerven T. Bolleman; et al. (Bioinform., 2021)

The Gene Ontology resource: enriching a GOld mine - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

UniProt: the universal protein knowledgebase in 2021 - Alex Bateman; Maria Jesus Martin; Sandra E. Orchard; Michele Magrane; Rahat Agivetova; Shadab Ahmad; Emanuele Alpi; Emily H. Bowler-Barnett; Ramona Britto; Borisas Bursteinas; Hema Bye-A-Jee; Ray Coetzee; et al. (Nucleic Acids Res., 2021)

Enzyme annotation in UniProtKB using Rhea - Anne Morgat; Thierry Lombardot; Elisabeth Coudert; Kristian B. Axelsen; Teresa Batista Neto; Sebastien Gehant; Parit Bansal; Jerven T. Bolleman; Elisabeth Gasteiger; Edouard De Castro; Delphine Baratin; Monica Pozzato; et al. (Bioinform., 2020)

Updates in Rhea: SPARQLing biochemical reaction data - Thierry Lombardot; Anne Morgat; Kristian B. Axelsen; Lucila Aimo; Nevila Hyka-Nouspikel; Anne Niknejad; Alexandr Ignatchenko; Ioannis Xenarios; Elisabeth Coudert; Nicole Redaschi; Alan J. Bridge (Nucleic Acids Res., 2019)

Updates in Rhea - an expert curated resource of biochemical reactions - Anne Morgat; Thierry Lombardot; Kristian B. Axelsen; Lucila Aimo; Anne Niknejad; Nevila Hyka-Nouspikel; Elisabeth Coudert; Monica Pozzato; Marco Pagni; Sébastien Moretti; Steven Rosanoff; Joseph Onwubiko; et al. (Nucleic Acids Res., 2017)

Updates in Rhea - a manually curated resource of biochemical reactions - Anne Morgat; Kristian B. Axelsen; Thierry Lombardot; Rafael Alcántara; Lucila Aimo; Mohamed Zerara; Anne Niknejad; Eugeni Belda; Nevila Hyka-Nouspikel; Elisabeth Coudert; Nicole Redaschi; Lydie Bougueleret; et al. (Nucleic Acids Res., 2015)

HAMAP in 2015: updates to the protein family classification and annotation system - Ivo Pedruzzi; Catherine Rivoire; Andrea H. Auchincloss; Elisabeth Coudert; Guillaume Keller; Edouard De Castro; Delphine Baratin; Béatrice A. Cuche; Lydie Bougueleret; Sylvain Poux; Nicole Redaschi; Ioannis Xenarios; et al. (Nucleic Acids Res., 2015)

HAMAP in 2013, new developments in the protein family classification and annotation system - Ivo Pedruzzi; Catherine Rivoire; Andrea H. Auchincloss; Elisabeth Coudert; Guillaume Keller; Edouard De Castro; Delphine Baratin; Béatrice A. Cuche; Lydie Bougueleret; Sylvain Poux; Nicole Redaschi; Ioannis Xenarios; et al. (Nucleic Acids Res., 2013)

The UniProt-GO Annotation database in 2011 - Emily C. Dimmer; Rachael P. Huntley; Yasmin Alam-Faruque; Tony Sawford; Claire O'Donovan; Maria Jesus Martin; Benoit Bely; Paul Browne; Wei Mun Chan; Ruth Y. Eberhardt; Michael Gardner; Kati Laiho; et al. (Nucleic Acids Res., 2012)

Rhea - a manually curated resource of biochemical reactions - Rafael Alcántara; Kristian B. Axelsen; Anne Morgat; Eugeni Belda; Elisabeth Coudert; Alan J. Bridge; Hong Cao; Paula de Matos; Marcus Ennis; Steve Turner; Gareth I. Owen; Lydie Bougueleret; et al. (Nucleic Acids Res., 2012)

UniPathway: a resource for the exploration and annotation of metabolic pathways - Anne Morgat; Eric Coissac; Elisabeth Coudert; Kristian B. Axelsen; Guillaume Keller; Amos Bairoch; Alan J. Bridge; Lydie Bougueleret; Ioannis Xenarios; Alain Viari (Nucleic Acids Res., 2012)

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase - Pascale Gaudet; Lydie Lane; Petra Fey; Alan J. Bridge; Sylvain Poux; Andrea H. Auchincloss; Kristian B. Axelsen; Silvia Braconi-Quintaje; Emmanuel Boutet; P. Brown; Elisabeth Coudert; Ruchira S. Datta; et al. (Database J. Biol. Databases Curation, 2009)

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot - Tania Lima; Andrea H. Auchincloss; Elisabeth Coudert; Guillaume Keller; Karine Michoud; Catherine Rivoire; Virginie Bulliard; Edouard De Castro; Corinne Lachaize; Delphine Baratin; Isabelle Phan; Lydie Bougueleret; et al. (Nucleic Acids Res., 2009)

Automated annotation of microbial proteomes in SWISS-PROT - Alexandre Gattiker; Karine Michoud; Catherine Rivoire; Andrea H. Auchincloss; Elisabeth Coudert; Tania Lima; Paul J. Kersey; Marco Pagni; Christian J. A. Sigrist; Corinne Lachaize; Anne-Lise Veuthey; Elisabeth Gasteiger; et al. (Comput. Biol. Chem., 2003)