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Salvatore Alaimo
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2020 – today
- 2024
- [c4]Emanuele Martorana
, Roberto Grasso, Giovanni Micale
Motif Finding Algorithms: A Performance Comparison. From Computational Logic to Computational Biology 2024: 250-267 - 2023
- [j11]Elisabetta C. Sciacca
DEGGs: an R package with shiny app for the identification of differentially expressed gene-gene interactions in high-throughput sequencing data. Bioinform. 39(4) (2023) - [c3]Giorgio Locicero, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti:
MASFENON: Multi-Agent Adaptive Simulation Framework for Evolution in Networks of Networks. BIBM 2023: 3714-3720 - 2022
- [j10]Alessandro Muscolino, Antonio Di Maria
NETME: on-the-fly knowledge network construction from biomedical literature. Appl. Netw. Sci. 7(1): 1-24 (2022) - [j9]Grete Francesca Privitera
Virus finding tools: current solutions and limitations. Briefings Bioinform. 23(4) (2022) - [c2]Ilaria Cosentini
COMBO: A Computational Framework to Analyze RNA-seq and Methylation Data Through Heterogeneous Multi-layer Networks. COMPLEX NETWORKS (1) 2022: 251-264 - 2021
- [j8]Alessandro La Ferlita
RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. BMC Bioinform. 22(1): 298 (2021) - [j7]Salvatore Alaimo
PHENSIM: Phenotype Simulator. PLoS Comput. Biol. 17(6) (2021) - 2020
- [j6]Sebastiano Di Bella
A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data. Briefings Bioinform. 21(6): 1987-1998 (2020) - [c1]Alessandro Muscolino, Antonio Di Maria
NETME: On-the-Fly Knowledge Network Construction from Biomedical Literature. COMPLEX NETWORKS (2) 2020: 386-397
2010 – 2019
- 2019
- [j5]Alessandro La Ferlita
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer. Database J. Biol. Databases Curation 2019: baz115 (2019) - [j4]Salvatore Alaimo
TACITuS: transcriptomic data collector, integrator, and selector on big data platform. BMC Bioinform. 20-S(9): 366:1-366:11 (2019) - 2017
- [j3]Davide S. Sardina
A novel computational method for inferring competing endogenous interactions. Briefings Bioinform. 18(6): 1071-1081 (2017) - 2015
- [j2]Salvatore Alaimo
DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference. BMC Syst. Biol. 9(S-3): S4 (2015) - [i1]Salvatore Alaimo, Rosalba Giugno, Mario Acunzo, Dario Veneziano, Alfredo Ferro, Alfredo Pulvirenti:
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. CoRR abs/1510.08237 (2015) - 2013
- [j1]Salvatore Alaimo
Drug-target interaction prediction through domain-tuned network-based inference. Bioinform. 29(16): 2004-2008 (2013)
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