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Kalpana Raja
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2020 – today
- 2023
- [j13]Yan Hu
, Vipina Kuttichi Keloth, Kalpana Raja, Yong Chen, Hua Xu:
Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach. Bioinform. 39(9) (2023) - [j12]Robert J. Millikin
Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models. BMC Bioinform. 24(1): 412 (2023) - [j11]Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves
Representing and utilizing clinical textual data for real world studies: An OHDSI approach. J. Biomed. Informatics 142: 104343 (2023) - [i3]Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu:
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations. CoRR abs/2305.16326 (2023) - 2021
- [j10]Matthew T. Patrick
Advancement in predicting interactions between drugs used to treat psoriasis and its comorbidities by integrating molecular and clinical resources. J. Am. Medical Informatics Assoc. 28(6): 1159-1167 (2021) - 2020
- [p2]Kalpana Raja, Jeyakumar Natarajan, Finn Kuusisto, John W. Steill, Ian Ross, James A. Thomson, Ron M. Stewart:
Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol. Protein-Protein Interaction Networks 2020: 13-34
2010 – 2019
- 2018
- [j9]Kalpana Raja, Jeyakumar Natarajan:
Mining protein phosphorylation information from biomedical literature using NLP parsing and Support Vector Machines. Comput. Methods Programs Biomed. 160: 57-64 (2018) - [j8]Archana Prabahar, Subashini Swaminathan, Kalpana Raja, Srividhya Vellingiri, Ramalingam Jegadeesan, Bharathi Nathan:
Discovery of novel inhibitors targeting movement protein for controlling the transmission of banana bunchy top virus infection in plantain by structure-based virtual screening. Int. J. Bioinform. Res. Appl. 14(4): 305-320 (2018) - 2016
- [j7]Mohammad Amin Morid
Classification of clinically useful sentences in clinical evidence resources. J. Biomed. Informatics 60: 14-22 (2016) - [c4]Kalpana Raja, Naman Dasot, Pawan Goyal, Siddhartha R. Jonnalagadda:
Towards Evidence-Based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns. CRI 2016 - [i2]Ravi Prakash Garg, Kalpana Raja, Siddhartha R. Jonnalagadda:
CRTS: A type system for representing clinical recommendations. CoRR abs/1609.01592 (2016) - [i1]Kalpana Raja, Andrew J. Sauer, Ravi Prakash Garg, Melanie R. Klerer, Siddhartha R. Jonnalagadda:
A Hybrid Citation Retrieval Algorithm for Evidence-based Clinical Knowledge Summarization: Combining Concept Extraction, Vector Similarity and Query Expansion for High Precision. CoRR abs/1609.01597 (2016) - 2015
- [j6]Suresh Subramani, Raja Kalpana, Pankaj Moses Monickaraj, Jeyakumar Natarajan:
HPIminer: A text mining system for building and visualizing human protein interaction networks and pathways. J. Biomed. Informatics 54: 121-131 (2015) - [j5]James Cormack, Chinmoy Nath, David Milward, Kalpana Raja, Siddhartha R. Jonnalagadda:
Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge. J. Biomed. Informatics 58: S120-S127 (2015) - [c3]Mohammad Amin Morid, Siddhartha R. Jonnalagadda, Marcelo Fiszman, Kalpana Raja, Guilherme Del Fiol:
Classification of Clinically Useful Sentences in MEDLINE. AMIA 2015 - [c2]Kalpana Raja, Andrew J. Sauer, Melanie R. Klerer, Siddhartha R. Jonnalagadda:
Automated Citation Retrieval System for Clinical Knowledge Management. AMIA 2015 - [c1]Jakob Stöber, Bret S. E. Heale, Kelley Fulghum, Guilherme Del Fiol, Heejun Kim, Kalpana Raja, Siddhartha Jonnalagadda:
Concept based Information Retrieval for Clinical Case Summaries. TREC 2015 - [p1]Kalpana Raja, Siddhartha Jonnalagadda:
Natural Language Processing and Data Mining for Clinical Text. Healthcare Data Analytics 2015: 219-249 - 2014
- [j4]Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan:
A hybrid named entity tagger for tagging human proteins/genes. Int. J. Data Min. Bioinform. 10(3): 315-328 (2014) - [j3]Suresh Subramani, Kalpana Raja, Jeyakumar Natarajan:
ProNormz - An integrated approach for human proteins and protein kinases normalization. J. Biomed. Informatics 47: 131-138 (2014) - 2013
- [j2]Cecilia N. Arighi
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database J. Biol. Databases Curation 2013 (2013) - [j1]Kalpana Raja, Suresh Subramani, Jeyakumar Natarajan:
PPInterFinder - a mining tool for extracting causal relations on human proteins from literature. Database J. Biol. Databases Curation 2013 (2013)
Coauthor Index
aka: Siddhartha R. Jonnalagadda
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