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David M. Holloway
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2020 – today
- 2024
- [j11]Alexander V. Spirov
, Ekaterina M. Myasnikova
, David M. Holloway
:
Body plan evolvability: The role of variability in gene regulatory networks. J. Bioinform. Comput. Biol. 22(3): 2450011:1-2450011:24 (2024)
2010 – 2019
- 2018
- [j10]Theodore Alexandrov, Nina Golyandina
, David M. Holloway, Alexander Shlemov, Alexander V. Spirov:
Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data. J. Comput. Biol. 25(11): 1220-1230 (2018) - 2016
- [j9]Alexander V. Spirov, Ekaterina M. Myasnikova, David M. Holloway:
Sequential construction of a model for modular gene expression control, applied to spatial patterning of the Drosophila gene hunchback. J. Bioinform. Comput. Biol. 14(2): 1641005:1-1641005:24 (2016) - 2015
- [j8]Leonid Zamdborg, David M. Holloway, Juan Julián Merelo Guervós
, Vladimir F. Levchenko
, Alexander V. Spirov:
Forced evolution in silico by artificial transposons and their genetic operators: The ant navigation problem. Inf. Sci. 306: 88-110 (2015) - 2014
- [j7]Elizaveta A. Zagrijchuk, Marat A. Sabirov, David M. Holloway
, Alexander V. Spirov:
In silico evolution of the hunchback gene indicates redundancy in cis-regulatory organization and spatial gene expression. J. Bioinform. Comput. Biol. 12(2) (2014) - [j6]Alexander V. Spirov, Elizaveta A. Zagriychuk, David M. Holloway
:
Evolutionary Design of Gene Networks: Forced Evolution by Genomic Parasites. Parallel Process. Lett. 24(2) (2014) - 2013
- [c8]Alexander V. Spirov, David M. Holloway
:
Modeling the Evolution of Gene Regulatory Networks for Spatial Patterning in Embryo Development. ICCS 2013: 1362-1371 - [c7]Alexander V. Spirov, Carlos E. Vanario-Alonso, Ekaterina N. Spirova, David M. Holloway:
Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation. PRIB 2013: 126-137 - 2012
- [j5]Lionel G. Harrison, Richard J. Adams, David M. Holloway
:
Dynamic regulation of growing domains for elongating and branching morphogenesis in plants. Biosyst. 109(3): 488-497 (2012) - [c6]Alexander V. Spirov, David M. Holloway
:
Evolution in silico of genes with multiple regulatory modules on the example of the Drosophila segmentation gene hunchback. CIBCB 2012: 244-251 - [c5]Alexander V. Spirov, Nina Golyandina
, David M. Holloway
, Theodore Alexandrov, Ekaterina N. Spirova, Francisco J. P. Lopes
:
Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise. EvoBIO 2012: 177-188 - [c4]David M. Holloway, Alexander B. Kazansky, Alexander V. Spirov:
Complexification of Gene Networks by Co-evolution of Genomes and Genomic Parasites. IJCCI 2012: 238-244 - [c3]Nina Golyandina
, David M. Holloway
, Francisco J. P. Lopes
, Alexander V. Spirov, Ekaterina N. Spirova, Konstantin Usevich:
Measuring Gene Expression Noise in Early Drosophila Embryos: Nucleus-to-nucleus Variability. ICCS 2012: 373-382 - 2011
- [j4]David M. Holloway
, Francisco J. P. Lopes
, Luciano da Fontoura Costa, Bruno Augusto Nassif Travençolo
, Nina Golyandina
, Konstantin Usevich, Alexander V. Spirov:
Gene Expression Noise in Spatial Patterning: hunchback Promoter Structure Affects Noise Amplitude and Distribution in Drosophila Segmentation. PLoS Comput. Biol. 7(2) (2011) - [c2]Alexander V. Spirov, David M. Holloway:
Retroviral Genetic Algorithms - Implementation with Tags and Validation Against Benchmark Functions. IJCCI (ECTA-FCTA) 2011: 233-238 - 2010
- [c1]Alexander V. Spirov, David M. Holloway
:
Design of a dynamic model of genes with multiple autonomous regulatory modules by evolutionary computations. ICCS 2010: 1005-1014
2000 – 2009
- 2008
- [j3]Francisco J. P. Lopes
, Fernando M. C. Vieira, David M. Holloway
, Paulo Mascarello Bisch
, Alexander V. Spirov:
Spatial Bistability Generates hunchback Expression Sharpness in the Drosophila Embryo. PLoS Comput. Biol. 4(9) (2008) - 2003
- [j2]Alexander V. Spirov, David M. Holloway
:
Evolutionary Techniques for Image Processing a Large Dataset of Early Drosophila Gene Expression. EURASIP J. Adv. Signal Process. 2003(8): 824-833 (2003) - [j1]Alexander V. Spirov, David M. Holloway:
Making the body plan: Precision in the genetic hierarchy of Drosophila embryo segmentation. Silico Biol. 3(1-2): 89-100 (2003)
Coauthor Index
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