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S. Chakra Chennubhotla
Person information
- affiliation: SpIntellx Inc., Pittsburgh, PA, USA
- affiliation: University of Pittsburgh, Department of Computational and Systems Biology, Pittsburgh, PA, USA
- affiliation (former): University of Toronto, ON, Canada
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2020 – today
- 2023
- [j11]Abigail C. Dommer, Lorenzo Casalino
, Fiona L. Kearns, Mia A. Rosenfeld
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. Int. J. High Perform. Comput. Appl. 37(1): 28-44 (2023) - 2022
- [j10]Anda Trifan, Defne Gorgun, Michael Salim, Zongyi Li
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action. Int. J. High Perform. Comput. Appl. 36(5-6): 603-623 (2022) - 2021
- [c20]Akash Parvatikar
Prototypical Models for Classifying High-Risk Atypical Breast Lesions. MICCAI (8) 2021: 143-152 - [c19]Neelima Pulagam, Marcus Hill
Classification of Diffuse Subcellular Morphologies. SciPy 2021: 115-122 - 2020
- [j9]Mojtaba Sedigh Fazli
OrNet - a Python Toolkit to Model the Diffuse Structure of Organelles as Social Networks. J. Open Source Softw. 5(47): 1983 (2020) - [c18]Brian Falkenstein
Classifying Nuclei Shape Heterogeneity in Breast Tumors with Skeletons. ECCV Workshops (1) 2020: 310-323 - [c17]Akash Parvatikar
Modeling Histological Patterns for Differential Diagnosis of Atypical Breast Lesions. MICCAI (5) 2020: 550-560 - [c16]Marcus Hill, Mojtaba Sedigh Fazli
Spectral Analysis of Mitochondrial Dynamics: A Graph-Theoretic Approach to Understanding Subcellular Pathology. SciPy 2020: 91-97 - [p1]Akif Burak Tosun, Filippo Pullara, Michael J. Becich, D. Lansing Taylor, S. Chakra Chennubhotla, Jeffrey L. Fine:
HistoMapr™: An Explainable AI (xAI) Platform for Computational Pathology Solutions. AI and ML for Digital Pathology 2020: 204-227 - [i2]Arvind Ramanathan, Heng Ma, Akash Parvatikar, S. Chakra Chennubhotla:
Artificial intelligence techniques for integrative structural biology of intrinsically disordered proteins. CoRR abs/2012.00885 (2020)
2010 – 2019
- 2018
- [c15]Andrew Durden, Allyson T. Loy, Barbara Reaves, Mojtaba Sedigh Fazli
Dynamic Social Network Modeling of Diffuse Subcellular Morphologies. SciPy 2018: 1-7 - [i1]Charles Lu, Maurice Marx, Maliha Zahid, Cecilia W. Lo, Chakra Chennubhotla, Shannon P. Quinn:
Stacked Neural Networks for end-to-end ciliary motion analysis. CoRR abs/1803.07534 (2018) - 2017
- [j8]Luong Nguyen
Spatial Statistics for Segmenting Histological Structures in H&E Stained Tissue Images. IEEE Trans. Medical Imaging 36(7): 1522-1532 (2017) - [c14]Luong Nguyen, Akif Burak Tosun, Jeffrey L. Fine, D. Lansing Taylor
Architectural patterns for differential diagnosis of proliferative breast lesions from histopathological images. ISBI 2017: 152-155 - [c13]Akif Burak Tosun, Luong Nguyen, Nathan Ong
Histological Detection of High-Risk Benign Breast Lesions from Whole Slide Images. MICCAI (2) 2017: 144-152 - 2015
- [j7]Arvind Ramanathan, Laura L. Pullum
ORBiT: Oak Ridge biosurveillance toolkit for public health dynamics. BMC Bioinform. 16(S17): S4 (2015) - 2014
- [j6]Ahmet Bakan, Anindita Dutta, Wenzhi Mao
Evol and ProDy for bridging protein sequence evolution and structural dynamics. Bioinform. 30(18): 2681-2683 (2014) - 2013
- [c12]Grace T. Huang, Kathryn I. Cunningham, Panayiotis V. Benos, Chakra S. Chennubhotla:
Spectral Clustering Strategies for Heterogeneous Disease Data. Pacific Symposium on Biocomputing 2013: 212-223 - 2012
- [c11]Virginia M. Burger, Arvind Ramanathan, Andrej J. Savol, Christopher B. Stanley, Pratul K. Agarwal, Chakra S. Chennubhotla:
Quasi-Anharmonic Analysis Reveals Intermediate States in the Nuclear Co-Activator Receptor Binding Domain Ensemble. Pacific Symposium on Biocomputing 2012: 70-81 - 2011
- [j5]Andrej J. Savol, Virginia M. Burger, Pratul K. Agarwal
QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin. Bioinform. 27(13): 52-60 (2011)
2000 – 2009
- 2007
- [j4]Chakra Chennubhotla, Ivet Bahar:
Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics. J. Comput. Biol. 14(6): 765-776 (2007) - [j3]Chakra Chennubhotla, Ivet Bahar:
Signal Propagation in Proteins and Relation to Equilibrium Fluctuations. PLoS Comput. Biol. 3(9) (2007) - [j2]Chakra Chennubhotla, Ivet Bahar:
Correction: Signal Propagation in Proteins and Relation to Equilibrium Fluctuations. PLoS Comput. Biol. 3(10) (2007) - [c10]Eran Eyal, Chakra Chennubhotla, Lee-Wei Yang, Ivet Bahar:
Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models. ISMB/ECCB (Supplement of Bioinformatics) 2007: 175-184 - 2006
- [j1]Illés J. Farkas, Chuang Wu, Chakra Chennubhotla, Ivet Bahar, Zoltán N. Oltvai:
Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae. BMC Bioinform. 7: 478 (2006) - [c9]Chakra Chennubhotla, Ivet Bahar:
Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics. RECOMB 2006: 379-393 - 2004
- [c8]Francisco J. Estrada, Allan D. Jepson, Chakra Chennubhotla:
Spectral Embedding and Min Cut for Image Segmentation. BMVC 2004: 1-10 - [c7]Chakra Chennubhotla, Allan D. Jepson:
Perceptual Distance Normalization for Appearance Detection. ICPR (2) 2004: 23-27 - [c6]Chakra Chennubhotla, Allan D. Jepson:
Hierarchical Eigensolver for Transition Matrices in Spectral Methods. NIPS 2004: 273-280 - 2003
- [c5]Chakra Chennubhotla, Alberto Paccanaro:
Markov Analysis of Protein Sequence Similarities. WIRN 2003: 278-286 - 2002
- [c4]Chakra Chennubhotla, Allan D. Jepson, John Midgley:
Robust Contrast-Invariant EigenDetection. ICPR (2) 2002: 745-748 - [c3]Chakra Chennubhotla, Allan D. Jepson:
Half-Lives of EigenFlows for Spectral Clustering. NIPS 2002: 689-696 - 2001
- [c2]Chakra Chennubhotla, Allan D. Jepson:
Sparse PCA: Extracting Multi-scale Structure from Data. ICCV 2001: 641-647
1990 – 1999
- 1994
- [c1]David W. Jacobs, Chakra Chennubhotla:
Finding structurally consistent motion correspondences. ICPR (1) 1994: 650-653
Coauthor Index
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