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2020 – today

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2025
[e1]
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  - conf/miccai/2023bonbidhie
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Rina Bao, Ellen Grant, Andrew Kirkpatrick, Juan P. Wachs, Yangming Ou:
AI for Brain Lesion Detection and Trauma Video Action Recognition - First BONBID-HIE Lesion Segmentation Challenge and First Trauma Thompson Challenge, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 12-16, 2023, Proceedings. Lecture Notes in Computer Science 14567, Springer 2025, ISBN 978-3-031-71625-6 [contents]
2024
[j21]
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  - journals/artmed/DarziSOSO24
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Erfan Darzi, Yiqing Shen, Yangming Ou, Nanna Maria Sijtsema, Peter M. A. van Ooijen:
Tackling heterogeneity in medical federated learning via aligning vision transformers. Artif. Intell. Medicine 155: 102936 (2024)
[c14]
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  - conf/miccai/HussainGO24
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Mohammad Arafat Hussain, Ellen Grant, Yangming Ou:
RCT: Relational Connectivity Transformer for Enhanced Prediction of Absolute and Residual Intelligence. PRIME@MICCAI 2024: 35-47
[c13]
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Inês Prata Machado, Anna Reithmeir, Fryderyk Victor Kögl, Leonardo Rundo, Gabriel Funingana, Marika Reinius, Gift Mungmeeprued, Zeyu Gao, Cathal McCague, Eric Kerfoot, Ramona Woitek, Evis Sala, Yangming Ou, James D. Brenton, Julia A. Schnabel, Mireia Crispin:
A Self-supervised Image Registration Approach for Measuring Local Response Patterns in Metastatic Ovarian Cancer. WBIR 2024: 295-307
[i7]
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  - journals/corr/abs-2407-17114
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Inês Prata Machado, Anna Reithmeir, Fryderyk Victor Kögl, Leonardo Rundo, Gabriel Funingana, Marika Reinius, Gift Mungmeeprued, Zeyu Gao, Cathal McCague, Eric Kerfoot, Ramona Woitek, Evis Sala, Yangming Ou, James D. Brenton, Julia A. Schnabel, Mireia Crispin:
A Self-Supervised Image Registration Approach for Measuring Local Response Patterns in Metastatic Ovarian Cancer. CoRR abs/2407.17114 (2024)
2023
[j20]
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Sheng He, Yanfang Feng, Patricia Ellen Grant, Yangming Ou:
Segmentation ability map: Interpret deep features for medical image segmentation. Medical Image Anal. 84: 102726 (2023)
[j19]
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  - journals/npjdm/LemingBBOIGI23
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Matthew Leming, Esther E. Bron, Rose Bruffaerts, Yangming Ou, Juan Eugenio Iglesias, Randy L. Gollub, Hyungsoon Im:
Challenges of implementing computer-aided diagnostic models for neuroimages in a clinical setting. npj Digit. Medicine 6 (2023)
[i6]
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  - journals/corr/abs-2304-01401
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Sheng He, Rina Bao, Patricia Ellen Grant, Yangming Ou:
U-Netmer: U-Net meets Transformer for medical image segmentation. CoRR abs/2304.01401 (2023)
[i5]
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  - journals/corr/abs-2304-09324
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Sheng He, Rina Bao, Jingpeng Li, Patricia Ellen Grant, Yangming Ou:
Accuracy of Segment-Anything Model (SAM) in medical image segmentation tasks. CoRR abs/2304.09324 (2023)
2022
[j18]
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  - journals/ni/SinghHSRCCDEFFG22
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Nalini M. Singh, Jordan B. Harrod, Sandya Subramanian, Mitchell B. Robinson, Ken Chang, Suheyla Cetin Karayumak, Adrian Vasile Dalca, Simon B. Eickhoff, Michael Fox, Loraine Franke, Polina Golland, Daniel Haehn, Juan Eugenio Iglesias, Lauren J. O'Donnell, Yangming Ou, Yogesh Rathi, Shan H. Siddiqi, Haoqi Sun, M. Brandon Westover, Susan L. Whitfield-Gabrieli, Randy L. Gollub:
How Machine Learning is Powering Neuroimaging to Improve Brain Health. Neuroinformatics 20(4): 943-964 (2022)
[j17]
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Sheng He, Patricia Ellen Grant, Yangming Ou:
Global-Local Transformer for Brain Age Estimation. IEEE Trans. Medical Imaging 41(1): 213-224 (2022)
[j16]
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Sheng He, Yanfang Feng, Patricia Ellen Grant, Yangming Ou:
Deep Relation Learning for Regression and Its Application to Brain Age Estimation. IEEE Trans. Medical Imaging 41(9): 2304-2317 (2022)
[i4]
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  - journals/corr/abs-2204-06598
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Sheng He, Yanfang Feng, Patricia Ellen Grant, Yangming Ou:
Deep Relation Learning for Regression and Its Application to Brain Age Estimation. CoRR abs/2204.06598 (2022)
[i3]
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  - journals/corr/abs-2212-09206
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Sheng He, Yanfang Feng, Patricia Ellen Grant, Yangming Ou:
Segmentation Ability Map: Interpret deep features for medical image segmentation. CoRR abs/2212.09206 (2022)
2021
[j15]
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  - journals/mia/HePPGMPPRGO21
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Sheng He, Diana Pereira, Juan David Perez, Randy L. Gollub, Shawn N. Murphy, Sanjay Prabhu, Rudolph Pienaar, Richard L. Robertson, Patricia Ellen Grant, Yangming Ou:
Multi-channel attention-fusion neural network for brain age estimation: Accuracy, generality, and interpretation with 16, 705 healthy MRIs across lifespan. Medical Image Anal. 72: 102091 (2021)
[i2]
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  - journals/corr/abs-2109-01663
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Sheng He, Patricia Ellen Grant, Yangming Ou:
Global-Local Transformer for Brain Age Estimation. CoRR abs/2109.01663 (2021)
2020
[j14]
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  - journals/cmmm/WangHLTZLCO20
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Haiyan Wang, Guoqiang Han, Haojiang Li, Guihua Tao, Enhong Zhuo, Lizhi Liu, Hongmin Cai, Yangming Ou:
A Collaborative Dictionary Learning Model for Nasopharyngeal Carcinoma Segmentation on Multimodalities MR Sequences. Comput. Math. Methods Medicine 2020: 7562140:1-7562140:15 (2020)
[j13]
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Lin Qi, Haoran Zhang, Xuehao Cao, Xuyang Lyu, Lisheng Xu, Benqiang Yang, Yangming Ou:
Multi-Scale Feature Fusion Convolutional Neural Network for Concurrent Segmentation of Left Ventricle and Myocardium in Cardiac MR Images. J. Medical Imaging Health Informatics 10(5): 1023-1032 (2020)
[j12]
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  - journals/neuroimage/ZolleiIOGF20
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Lilla Zöllei, Juan Eugenio Iglesias, Yangming Ou, Patricia Ellen Grant, Bruce Fischl:
Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. NeuroImage 218: 116946 (2020)
[j11]
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  - journals/tmi/XiaoMWSKDMRRCFM20
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Yiming Xiao, Andreas Maier, Wolfgang Wein, Roozbeh Shams, Samuel Kadoury, David Drobny, Marc Modat, Ingerid Reinertsen, Hassan Rivaz, Matthieu Chabanas, Maryse Fortin, Inês Machado, Yangming Ou, Mattias P. Heinrich, Julia A. Schnabel, Xia Zhong:
Evaluation of MRI to Ultrasound Registration Methods for Brain Shift Correction: The CuRIOUS2018 Challenge. IEEE Trans. Medical Imaging 39(3): 777-786 (2020)
[c12]
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  - conf/isbi/HeGMPPPRGO20
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Sheng He, Randy L. Gollub, Shawn N. Murphy, Juan David Perez, Sanjay Prabhu, Rudolph Pienaar, Richard L. Robertson, Patricia Ellen Grant, Yangming Ou:
Brain Age Estimation Using LSTM on Children's Brain MRI. ISBI 2020: 1-4
[i1]
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  - journals/corr/abs-2002-09045
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Sheng He, Randy L. Gollub, Shawn N. Murphy, Juan David Perez, Sanjay Prabhu, Rudolph Pienaar, Richard L. Robertson, Patricia Ellen Grant, Yangming Ou:
Brain Age Estimation Using LSTM on Children's Brain MRI. CoRR abs/2002.09045 (2020)

2010 – 2019

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2019
[j10]
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  - journals/neuroimage/MachadoTGUELTCM19
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Inês Machado, Matthew Toews, Elizabeth George, Prashin Unadkat, Walid Essayed, Jie Luo, Pedro Teodoro, Herculano Carvalho, Jorge Martins, Polina Golland, Steve Pieper, Sarah F. Frisken, Alexandra J. Golby, William M. Wells III, Yangming Ou:
Deformable MRI-Ultrasound registration using correlation-based attribute matching for brain shift correction: Accuracy and generality in multi-site data. NeuroImage 202 (2019)
[c11]
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  - conf/miccai/HuangZLLCO19
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Jia-bin Huang, Enhong Zhuo, Haojiang Li, Lizhi Liu, Hongmin Cai, Yangming Ou:
Achieving Accurate Segmentation of Nasopharyngeal Carcinoma in MR Images Through Recurrent Attention. MICCAI (5) 2019: 494-502
2018
[j9]
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  - journals/ni/OuZDRMGRGKG18
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Yangming Ou, Lilla Zöllei, Xiao Da, Kallirroi Retzepi, Shawn N. Murphy, Elizabeth R. Gerstner, Bruce R. Rosen, Patricia Ellen Grant, Jayashree Kalpathy-Cramer, Randy L. Gollub:
Field of View Normalization in Multi-Site Brain MRI. Neuroinformatics 16(3-4): 431-444 (2018)
[j8]
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  - journals/tbe/BernardisZKOJAM18
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Elena Bernardis, Yong Zhang, Ender Konukoglu, Yangming Ou, Harold S. Javitz, Leon Axel, Dimitris N. Metaxas, Benoit Desjardins, Kilian M. Pohl:
eCurves: A Temporal Shape Encoding. IEEE Trans. Biomed. Eng. 65(4): 733-744 (2018)
[c10]
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  - conf/miccai/MachadoTLUEGTCM18
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Inês Machado, Matthew Toews, Jie Luo, Prashin Unadkat, Walid Essayed, Elizabeth George, Pedro Teodoro, Herculano Carvalho, Jorge Martins, Polina Golland, Steve Pieper, Sarah F. Frisken, Alexandra J. Golby, William M. Wells III, Yangming Ou:
Deformable MRI-Ultrasound Registration via Attribute Matching and Mutual-Saliency Weighting for Image-Guided Neurosurgery. POCUS/BIVPCS/CuRIOUS/CPM@MICCAI 2018: 165-171
2016
[j7]
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  - journals/neuroimage/DoshiEORGGSFD16
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Jimit Doshi, Güray Erus, Yangming Ou, Susan M. Resnick, Ruben C. Gur, Raquel E. Gur, Theodore D. Satterthwaite, Susan Furth, Christos Davatzikos:
MUSE: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters, and locally optimal atlas selection. NeuroImage 127: 186-195 (2016)
2015
[j6]
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  - journals/mia/PetitjeanZBDGCRACCJLDDEMNOOPPPRRSSWWY15
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Caroline Petitjean, Maria A. Zuluaga, Wenjia Bai, Jean-Nicolas Dacher, Damien Grosgeorge, Jérôme Caudron, Su Ruan, Ismail Ben Ayed, Manuel Jorge Cardoso, Hsiang-Chou Chen, Daniel Jimenez-Carretero, María J. Ledesma-Carbayo, Christos Davatzikos, Jimit Doshi, Güray Erus, Oskar M. O. Maier, Cyrus M. S. Nambakhsh, Yangming Ou, Sébastien Ourselin, Chun-Wei Peng, Nicholas S. Peters, Terry M. Peters, Martin Rajchl, Daniel Rueckert, Andrés Santos, Wenzhe Shi, Ching-Wei Wang, Haiyan Wang, Jing Yuan:
Right ventricle segmentation from cardiac MRI: A collation study. Medical Image Anal. 19(1): 187-202 (2015)
[j5]
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Yangming Ou, Randy L. Gollub, Kallirroi Retzepi, Nathaniel Reynolds, Rudolph Pienaar, Steve Pieper, Shawn N. Murphy, Patricia Ellen Grant, Lilla Zöllei:
Brain extraction in pediatric ADC maps, toward characterizing neuro-development in multi-platform and multi-institution clinical images. NeuroImage 122: 246-261 (2015)
[c9]
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  - conf/micad/WuOWCYHKARDDK15
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Jia Wu, Yangming Ou, Susan P. Weinstein, Emily F. Conant, Ning Yu, Vahid Hoshmand, Brad M. Keller, Ahmed Bilal Ashraf, Mark Rosen, Angela DeMichele, Christos Davatzikos, Despina Kontos:
Quantification of tumor changes during neoadjuvant chemotherapy with longitudinal breast DCE-MRI registration. Medical Imaging: Computer-Aided Diagnosis 2015: 94141Z
2014
[j4]
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Geert Litjens, Robert Toth, Wendy J. M. van de Ven, Caroline Hoeks, Sjoerd Kerkstra, Bram van Ginneken, Graham Vincent, Gwenaël Guillard, Neil Birbeck, Jindang Zhang, Robin Strand, Filip Malmberg, Yangming Ou, Christos Davatzikos, Matthias Kirschner, Florian Jung, Jing Yuan, Wu Qiu, Qinquan Gao, Philip J. Edwards, Bianca Maan, Ferdinand van der Heijden, Soumya Ghose, Jhimli Mitra, Jason Dowling, Dean C. Barratt, Henkjan J. Huisman, Anant Madabhushi:
Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge. Medical Image Anal. 18(2): 359-373 (2014)
[j3]
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Yangming Ou, Hamed Akbari, Michel Bilello, Xiao Da, Christos Davatzikos:
Comparative Evaluation of Registration Algorithms in Different Brain Databases With Varying Difficulty: Results and Insights. IEEE Trans. Medical Imaging 33(10): 2039-2065 (2014)
2012
[c8]
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Elena Bernardis, Ender Konukoglu, Yangming Ou, Dimitris N. Metaxas, Benoit Desjardins, Kilian M. Pohl:
Temporal Shape Analysis via the Spectral Signature. MICCAI (2) 2012: 49-56
[c7]
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Yangming Ou, Dong Hye Ye, Kilian M. Pohl, Christos Davatzikos:
Validation of DRAMMS among 12 Popular Methods in Cross-Subject Cardiac MRI Registration. WBIR 2012: 209-219
2011
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  - journals/mia/OuSPD11
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Yangming Ou, Aristeidis Sotiras, Nikos Paragios, Christos Davatzikos:
DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting. Medical Image Anal. 15(4): 622-639 (2011)
2010
[c6]
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  - conf/isbi/OuBBMDP10
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Yangming Ou, Ahmed Besbes, Michel Bilello, Mohamed Mansour, Christos Davatzikos, Nikos Paragios:
Detecting mutually-salient landmark pairs with MRF regularization. ISBI 2010: 400-403
[c5]
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Aristeidis Sotiras, Yangming Ou, Ben Glocker, Christos Davatzikos, Nikos Paragios:
Simultaneous Geometric - Iconic Registration. MICCAI (2) 2010: 676-683

2000 – 2009

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2009
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Yangming Ou, Dinggang Shen, Jianchao Zeng, Leon Sun, Judd W. Moul, Christos Davatzikos:
Sampling the spatial patterns of cancer: Optimized biopsy procedures for estimating prostate cancer volume and Gleason Score. Medical Image Anal. 13(4): 609-620 (2009)
[c4]
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  - conf/cvpr/OuSFTD09
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Yangming Ou, Dinggang Shen, Michael D. Feldman, John Tomaszewski, Christos Davatzikos:
Non-rigid registration between histological and MR images of the prostate: A joint segmentation and registration framework. CVPR Workshops 2009: 125-132
[c3]
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Yangming Ou, Christos Davatzikos:
DRAMMS: Deformable Registration via Attribute Matching and Mutual-Saliency Weighting. IPMI 2009: 50-62
2007
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  - conf/isbi/XingOESS07
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Ye Xing, Yangming Ou, Sarah Englander, Mitchell D. Schnall, Dinggang Shen:
Simultaneous Estimation and Segmentation of T1 Map for Breast Parenchyma Measurement. ISBI 2007: 332-335
[c1]
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  - conf/isbi/CaiVOLMD07
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Hongmin Cai, Ragini Verma, Yangming Ou, Seung-Koo Lee, Elias R. Melhem, Christos Davatzikos:
Probabilistic Segmentation of Brain Tumors Based on Multi-Modality Magnetic Resonance Images. ISBI 2007: 600-603

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