PM3-compatible zinc parameters optimized for metalloenzyme active sites. - Brothers, Edward N.; Suárez, Dimas; Deerfield, David W., II; Merz, Kenneth M., Jr. (J. Comput. Chem., 2004)

Implementation of Genetic Sequence Alignment Programs on Supercomputers. - Ropelewski, Alexander; Nicholas, Hugh B.; Deerfield, David W., II (J. Supercomput., 1997)

Adventures in Improving the Scaling and Accuracy of a Parallel Molecular Dynamics Program. - Crowley, Michael F.; Darden, Thomas A.; Cheatham, Thomas E., III; Deerfield, David W., II (J. Supercomput., 1997)

A simple approach for the distribution of computationally intense tasks in an heterogeneous environment: distribution of the MDPP image-processing package. - Smith, P. R.; Ropelewski, Alexander; Balog, Douglas A.; Gottesman, S.; Deerfield, David W., II (Comput. Appl. Biosci., 1991)